AlfalfaGEDB | MS.gene42030

M. sativa cultivar XinJiangDaYe / MS.gene42030

KEGG: -
GO: -
PFAM: PF03634.16

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42030.t1	XP_027366958.1	75.2	101	25	0	17	117	82	182	4.20E-34	154.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42030.t1	Q9LT89	65.4	104	35	1	3	105	37	140	1.6e-29	130.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42030.t1	A0A1S2XYS3	74.7	99	25	0	19	117	71	169	3.9e-34	153.7

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene42030.t1	TF	TCP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42030.t1	MTR_1g101810	67.521	117	37	1	2	117	43	159	8.63e-50	161
MS.gene42030.t1	MTR_1g101810	67.521	117	37	1	2	117	73	189	2.09e-49	161
MS.gene42030.t1	MTR_8g033070	67.391	92	29	1	22	113	80	170	8.90e-38	130
MS.gene42030.t1	MTR_7g028160	58.242	91	38	0	10	100	38	128	4.62e-32	114
MS.gene42030.t1	MTR_1g038650	63.014	73	27	0	12	84	22	94	6.43e-29	105
MS.gene42030.t1	MTR_2g006150	58.242	91	38	0	19	109	127	217	1.62e-27	105
MS.gene42030.t1	MTR_2g006150	58.242	91	38	0	19	109	127	217	2.55e-27	104
MS.gene42030.t1	MTR_1g114380	60.274	73	29	0	12	84	23	95	2.94e-27	101
MS.gene42030.t1	MTR_5g039600	54.255	94	43	0	10	103	55	148	6.97e-27	102
MS.gene42030.t1	MTR_1g063870	69.841	63	19	0	22	84	49	111	9.69e-27	98.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42030.t1	AT2G45680	68.041	97	30	1	22	117	75	171	3.62e-39	134
MS.gene42030.t1	AT5G51910	66.000	100	33	1	1	99	35	134	9.20e-39	132
MS.gene42030.t1	AT5G51910	66.000	100	33	1	1	99	35	134	9.20e-39	132
MS.gene42030.t1	AT1G72010	73.913	69	18	0	16	84	57	125	3.03e-31	114
MS.gene42030.t1	AT1G69690	74.603	63	16	0	22	84	52	114	3.05e-29	107
MS.gene42030.t1	AT1G35560	72.727	66	18	0	19	84	52	117	9.71e-29	106
MS.gene42030.t1	AT1G58100	71.212	66	19	0	19	84	57	122	1.08e-28	107
MS.gene42030.t1	AT5G23280	61.842	76	29	0	9	84	26	101	1.17e-28	104
MS.gene42030.t1	AT3G47620	59.091	88	31	1	2	84	92	179	1.38e-28	108
MS.gene42030.t1	AT3G27010	65.278	72	25	0	12	83	68	139	2.43e-28	105

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Find 38 sgRNAs with CRISPR-Local

Find 46 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGACGTTGAACCCAC+TGG	0.536961	6.4:-16739059	MS.gene42030:CDS
AAAAGCAAGAGAGCCTCAAT+TGG	0.505951	6.4:-16738731	MS.gene42030:CDS
AAGTCTGATGGAGAAACAAT+AGG	0.400346	6.4:-16738899	MS.gene42030:CDS
ACATCGGCAGCTAGACCAGA+CGG	0.655173	6.4:-16738773	MS.gene42030:CDS
AGAAACAATAGGGTGGTTAC+TGG	0.376057	6.4:-16738888	MS.gene42030:CDS
AGAAGACCGTCACACGAAGG+TGG	0.622175	6.4:-16738999	MS.gene42030:CDS
AGACCGTCACACGAAGGTGG+AGG	0.561466	6.4:-16738996	MS.gene42030:CDS
AGCTAGACCAGACGGCCAAA+AGG	0.501805	6.4:-16738765	MS.gene42030:CDS
AGTCTGATGGAGAAACAATA+GGG	0.517180	6.4:-16738898	MS.gene42030:CDS
ATCAGAAGACCGTCACACGA+AGG	0.685962	6.4:-16739002	MS.gene42030:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTCTGATGGAGAAACAAT+AGG	-	chr6.4:16738892-16738911	MS.gene42030:CDS	35.0%
AGTCTGATGGAGAAACAATA+GGG	-	chr6.4:16738893-16738912	MS.gene42030:CDS	35.0%
AAAAGCAAGAGAGCCTCAAT+TGG	-	chr6.4:16739060-16739079	MS.gene42030:CDS	40.0%
AGAAACAATAGGGTGGTTAC+TGG	-	chr6.4:16738903-16738922	MS.gene42030:CDS	40.0%
GTTGAAGGTTCCAACAACAT+CGG	-	chr6.4:16739002-16739021	MS.gene42030:CDS	40.0%
AAAACAGACGTTGAACCCAC+TGG	-	chr6.4:16738732-16738751	MS.gene42030:CDS	45.0%
CTGATGGAGAAACAATAGGG+TGG	-	chr6.4:16738896-16738915	MS.gene42030:CDS	45.0%
GATCTTGGTCACAAGTCTGA+TGG	-	chr6.4:16738880-16738899	MS.gene42030:CDS	45.0%
GGAACCACAAAAGACAGTGT+CGG	-	chr6.4:16738753-16738772	MS.gene42030:CDS	45.0%
TGTCAGCAACATGTGCATCT+AGG	-	chr6.4:16738839-16738858	MS.gene42030:CDS	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.4	gene	16738727	16739086	16738727	ID=MS.gene42030
chr6.4	mRNA	16738727	16739086	16738727	ID=MS.gene42030.t1;Parent=MS.gene42030
chr6.4	exon	16738727	16739086	16738727	ID=MS.gene42030.t1.exon1;Parent=MS.gene42030.t1
chr6.4	CDS	16738727	16739086	16738727	ID=cds.MS.gene42030.t1;Parent=MS.gene42030.t1

Gene Sequence	>MS.gene42030 ATGGAAAAACAGACGTTGAACCCACTGGAACCACAAAAGACAGTGTCGGCCGAAAAGAAACCATCAGAAGACCGTCACACGAAGGTGGAGGGACGTGTCCGAAGAGTCACACTGTCAGCAACATGTGCATCTAGGATCTTCCAGTTGACGAGAGATCTTGGTCACAAGTCTGATGGAGAAACAATAGGGTGGTTACTGGAACAAGCTGAACCTGCAATCATCAAAGCCACCGGCACCGGAGTAATTCCGGCCATAGCCATTTCAGAGGGCGGAAAGTTGAAGGTTCCAACAACATCGGCAGCTAGACCAGACGGCCAAAAGGCCCCAAGGAAGAAAAGCAAGAGAGCCTCAATTGGTTAA
Protein sequence	>MS.gene42030.t1 MEKQTLNPLEPQKTVSAEKKPSEDRHTKVEGRVRRVTLSATCASRIFQLTRDLGHKSDGETIGWLLEQAEPAIIKATGTGVIPAIAISEGGKLKVPTTSAARPDGQKAPRKKSKRASIG