AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene42037

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene42037.t1 MTR_6g043060 69.725 327 69 2 1 297 1 327 3.20e-162 454
MS.gene42037.t1 MTR_8g083100 74.545 275 26 1 23 253 23 297 3.95e-143 412
MS.gene42037.t1 MTR_8g083100 80.952 42 8 0 258 299 416 457 4.18e-15 75.9
MS.gene42037.t1 MTR_2g100680 57.860 299 79 3 1 254 12 308 2.52e-112 332
MS.gene42037.t1 MTR_6g044340 62.891 256 71 2 68 299 8 263 4.12e-107 312
MS.gene42037.t1 MTR_2g100670 55.477 283 94 6 1 254 14 293 1.66e-94 282
MS.gene42037.t1 MTR_2g100670 55.477 283 94 6 1 254 122 401 1.12e-92 281
MS.gene42037.t1 MTR_5g029680 51.659 211 88 4 22 218 32 242 5.89e-65 212
MS.gene42037.t1 MTR_8g087540 41.781 292 147 7 15 293 5 286 9.40e-60 196
MS.gene42037.t1 MTR_4g077970 45.933 209 101 3 20 216 10 218 8.88e-56 187
MS.gene42037.t1 MTR_6g044430 47.177 248 43 5 100 295 14 225 8.41e-54 175
MS.gene42037.t1 MTR_6g044440 54.190 179 29 2 174 299 1 179 2.21e-52 170
MS.gene42037.t1 MTR_7g095680 45.894 207 102 4 19 215 46 252 4.95e-51 172
MS.gene42037.t1 MTR_1g102860 43.498 223 109 6 7 215 20 239 5.20e-51 171
MS.gene42037.t1 MTR_3g104550 44.118 204 108 3 19 217 43 245 9.47e-51 172
MS.gene42037.t1 MTR_1g061170 41.500 200 114 2 20 216 47 246 9.29e-48 166
MS.gene42037.t1 MTR_1g071360 40.553 217 117 3 22 233 32 241 1.88e-46 159
MS.gene42037.t1 MTR_1g071360 40.553 217 117 3 22 233 29 238 2.30e-46 160
MS.gene42037.t1 MTR_8g105780 39.249 293 147 11 20 293 20 300 1.44e-45 158
MS.gene42037.t1 MTR_3g101870 66.667 102 34 0 12 113 14 115 7.93e-45 156
MS.gene42037.t1 MTR_5g017470 61.321 106 41 0 17 122 4 109 2.81e-42 147
MS.gene42037.t1 MTR_6g086805 40.187 214 101 2 20 219 9 209 5.55e-42 148
MS.gene42037.t1 MTR_5g089170 68.817 93 29 0 21 113 24 116 6.99e-42 145
MS.gene42037.t1 MTR_5g010680 60.185 108 43 0 6 113 8 115 7.15e-42 148
MS.gene42037.t1 MTR_2g017890 58.333 108 45 0 12 119 5 112 2.29e-40 144
MS.gene42037.t1 MTR_6g044350 54.795 146 32 3 174 285 1 146 1.96e-39 135
MS.gene42037.t1 MTR_0020s0020 62.366 93 35 0 21 113 32 124 5.58e-38 137
MS.gene42037.t1 MTR_7g091370 51.327 113 55 0 1 113 1 113 6.64e-38 134
MS.gene42037.t1 MTR_1g100777 60.000 95 38 0 21 115 17 111 3.24e-37 134
MS.gene42037.t1 MTR_4g088900 57.732 97 37 1 21 113 32 128 5.52e-34 123
MS.gene42037.t1 MTR_5g047190 45.361 97 46 2 30 119 1 97 7.64e-22 88.2
MS.gene42037.t1 MTR_4g045757 60.870 69 26 1 12 79 3 71 7.12e-21 85.1
MS.gene42037.t1 MTR_6g044510 61.972 71 19 1 237 299 18 88 1.14e-20 84.7
MS.gene42037.t1 MTR_1g061170 31.447 159 98 4 61 216 1 151 4.48e-14 72.0
MS.gene42037.t1 MTR_6g044500 48.780 82 16 3 205 261 1 81 4.24e-13 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene42037.t1 AT4G13980 55.556 234 102 2 1 232 1 234 1.58e-84 261
MS.gene42037.t1 AT1G32330 47.660 235 104 5 1 216 16 250 1.88e-59 197
MS.gene42037.t1 AT1G32330 47.660 235 104 5 1 216 16 250 2.07e-59 197
MS.gene42037.t1 AT5G16820 49.289 211 92 5 20 216 25 234 3.94e-59 196
MS.gene42037.t1 AT5G16820 49.289 211 92 5 20 216 25 234 3.94e-59 196
MS.gene42037.t1 AT3G02990 44.206 233 117 4 8 228 9 240 7.55e-59 195
MS.gene42037.t1 AT4G17750 48.611 216 90 4 22 216 52 267 1.44e-58 195
MS.gene42037.t1 AT5G45710 37.821 312 155 8 14 295 5 307 7.21e-54 179
MS.gene42037.t1 AT5G45710 37.821 312 155 8 14 295 5 307 7.21e-54 179
MS.gene42037.t1 AT4G18880 48.341 211 99 3 16 220 9 215 4.06e-52 176
MS.gene42037.t1 AT2G26150 43.694 222 117 4 19 232 41 262 1.80e-51 173
MS.gene42037.t1 AT2G26150 43.694 222 117 4 19 232 41 262 1.80e-51 173
MS.gene42037.t1 AT3G22830 40.741 216 115 3 19 221 58 273 5.55e-48 165
MS.gene42037.t1 AT5G03720 43.069 202 107 3 20 213 53 254 1.51e-47 164
MS.gene42037.t1 AT5G03720 43.069 202 107 3 20 213 53 254 1.51e-47 164
MS.gene42037.t1 AT3G51910 42.180 211 105 5 22 226 29 228 2.18e-47 160
MS.gene42037.t1 AT1G67970 44.974 189 97 4 20 201 17 205 1.52e-44 155
MS.gene42037.t1 AT1G46264 62.500 112 32 1 21 122 33 144 2.99e-44 154
MS.gene42037.t1 AT3G24520 45.087 173 75 3 20 191 15 168 3.16e-43 151
MS.gene42037.t1 AT5G43840 42.246 187 96 3 21 205 18 194 4.44e-42 146
MS.gene42037.t1 AT5G54070 43.716 183 97 2 20 201 69 246 6.40e-41 145
MS.gene42037.t1 AT3G63350 32.333 300 168 9 5 295 3 276 6.76e-41 143
MS.gene42037.t1 AT4G11660 61.000 100 39 0 14 113 51 150 1.81e-38 139
MS.gene42037.t1 AT4G36990 57.143 105 45 0 11 115 3 107 5.02e-38 136
MS.gene42037.t1 AT2G41690 52.174 115 55 0 22 136 40 154 3.15e-37 133
MS.gene42037.t1 AT5G62020 49.580 119 59 1 1 118 1 119 5.76e-37 134
MS.gene42037.t1 AT4G18870 46.591 88 47 0 22 109 146 233 1.19e-22 95.5
MS.gene42037.t1 AT4G18870 45.833 96 51 1 14 109 5 99 2.44e-22 94.7
MS.gene42037.t1 AT2G26150 33.000 200 119 6 43 232 13 207 8.56e-17 79.3
MS.gene42037.t1 AT2G26150 33.000 200 119 6 43 232 13 207 8.56e-17 79.3
MS.gene42037.t1 AT1G77570 42.391 92 49 3 19 106 22 113 8.60e-17 76.3
MS.gene42037.t1 AT4G19630 34.021 97 61 1 19 112 8 104 2.26e-13 66.2
MS.gene42037.t1 AT5G45710 28.636 220 118 9 106 295 1 211 2.94e-12 65.9
MS.gene42037.t1 AT5G45710 28.636 220 118 9 106 295 1 211 2.94e-12 65.9

Find 70 sgRNAs with CRISPR-Local

Find 139 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTCCAATGCTGCCCTTTC+TGG -0.010683 6.4:+16649241 None:intergenic
GAAATTGCTGTGTTTGAAAT+AGG 0.280393 6.4:+16650748 None:intergenic
CAAAATCGAATCCATGGATT+TGG 0.313501 6.4:-16649023 MS.gene42037:CDS
CCACAGATGAGATCGTTTCT+TGG 0.319260 6.4:-16650835 MS.gene42037:CDS
AAGGAGTGAATGATGTGTTT+TGG 0.360172 6.4:-16648805 MS.gene42037:CDS
ATAACAAAAGCTTCATCGTT+TGG 0.362747 6.4:-16650805 MS.gene42037:CDS
AGAAGAACGCGAGAGAATTC+AGG 0.373908 6.4:+16650776 None:intergenic
ATAATTATAGCTTAGGAGTT+CGG 0.379819 6.4:+16649177 None:intergenic
ACGTTACCTGAAGCCTCCTT+TGG 0.398346 6.4:+16648851 None:intergenic
GAAGCCTCCTTTGGATCAAC+GGG 0.411360 6.4:+16648860 None:intergenic
ACCAAGCTACCTTCGGCAAC+AGG 0.417714 6.4:+16648953 None:intergenic
AGCTTAGGAGTTCGGATTGA+AGG 0.437582 6.4:+16649185 None:intergenic
TGCTGTGTTTGAAATAGGTT+GGG 0.448167 6.4:+16650753 None:intergenic
TGGAAACTTATAATAAGAAA+AGG 0.451693 6.4:-16649003 MS.gene42037:CDS
TCTCAAGATAATTATAGCTT+AGG 0.451761 6.4:+16649170 None:intergenic
TTGCTGTGTTTGAAATAGGT+TGG 0.457272 6.4:+16650752 None:intergenic
TTCCCACAAAATCGAATCCA+TGG 0.458946 6.4:-16649029 MS.gene42037:CDS
GCCGAGCAGCTGCTTCGACT+TGG 0.465666 6.4:+16648828 None:intergenic
CCACAGTCATAGTCATCCTC+CGG 0.469987 6.4:-16649278 MS.gene42037:CDS
AAAATCAGATCCTGATCGTT+GGG 0.473476 6.4:-16649371 MS.gene42037:CDS
TAAGAAAAGGAGATTGTCTC+AGG 0.477637 6.4:-16648990 MS.gene42037:CDS
TTGGCAAACTCCCAACGATC+AGG 0.478885 6.4:+16649361 None:intergenic
ATTATAAGTTTCCAAATCCA+TGG 0.481800 6.4:+16649012 None:intergenic
GTTGATCCAAAGGAGGCTTC+AGG 0.485386 6.4:-16648857 MS.gene42037:CDS
AGATCCAGAAAGGGCAGCAT+TGG 0.494908 6.4:-16649245 MS.gene42037:CDS
CGACGGAAGCAGAGAAGGTA+TGG 0.499479 6.4:-16650900 MS.gene42037:CDS
TGAGACTGAAAAGCTTCAGC+TGG 0.500611 6.4:-16649152 MS.gene42037:CDS
ATTGAGCTGACGGATGAAGC+TGG 0.506271 6.4:+16650724 None:intergenic
TTTGCAGAACTTCTTTGAGA+AGG 0.509914 6.4:-16649083 MS.gene42037:CDS
GCCTGTTGCCGAAGGTAGCT+TGG 0.510527 6.4:-16648954 MS.gene42037:CDS
TTCTCTCAGAATCTTTCTGA+AGG 0.511282 6.4:-16648914 MS.gene42037:CDS
AACTGACCCCGTTGATCCAA+AGG 0.528185 6.4:-16648867 MS.gene42037:CDS
GCTTAGGAGTTCGGATTGAA+GGG 0.531106 6.4:+16649186 None:intergenic
CTTTCTGAAGGAGAACTGAC+AGG 0.534056 6.4:-16648902 MS.gene42037:CDS
GTCGAAGCAGCTGCTCGGCA+AGG 0.540320 6.4:-16648824 MS.gene42037:CDS
AACAGCATGGACTTTCAGTA+AGG 0.541453 6.4:+16648774 None:intergenic
AAGGTCAACCAAGCTACCTT+CGG 0.541708 6.4:+16648946 None:intergenic
TCTGAGAGAAATTGCTAGGA+AGG 0.542451 6.4:+16648927 None:intergenic
GAAAATCAGATCCTGATCGT+TGG 0.543561 6.4:-16649372 MS.gene42037:CDS
TCATACGTCTTCTGAAGAAA+CGG 0.543831 6.4:+16650875 None:intergenic
TTCTACTGTAGATCCAGAAA+GGG 0.545124 6.4:-16649254 MS.gene42037:CDS
TCATCAGCCGCTGCTGCCGA+CGG 0.546634 6.4:-16650917 MS.gene42037:CDS
TCCAAGTCGAAGCAGCTGCT+CGG 0.548536 6.4:-16648829 MS.gene42037:CDS
TGAAGCCTCCTTTGGATCAA+CGG 0.548927 6.4:+16648859 None:intergenic
TCAGCAGCGATTGGATGGCA+TGG 0.549084 6.4:-16649122 MS.gene42037:CDS
CCGGAGGATGACTATGACTG+TGG 0.551542 6.4:+16649278 None:intergenic
TCTGCTTCCGTCGGCAGCAG+CGG 0.553780 6.4:+16650910 None:intergenic
GCTGCCGACGGAAGCAGAGA+AGG 0.554788 6.4:-16650905 MS.gene42037:CDS
CACAGTCATAGTCATCCTCC+GGG 0.559092 6.4:-16649277 MS.gene42037:CDS
GTTCTACTGTAGATCCAGAA+AGG 0.564434 6.4:-16649255 MS.gene42037:CDS
AGATTCTGAGAGAAATTGCT+AGG 0.568077 6.4:+16648923 None:intergenic
GACTGTGGATAGGTTTCTTG+CGG 0.574041 6.4:+16649293 None:intergenic
AGAAACGATCTCATCTGTGG+TGG 0.582151 6.4:+16650838 None:intergenic
GATTGGATGGCATGGAGAAG+AGG 0.590608 6.4:-16649114 MS.gene42037:CDS
CACATGCAGCCTGTTGCCGA+AGG 0.596050 6.4:-16648962 MS.gene42037:CDS
TCTTCATTGTCTGAACAGCA+TGG 0.597736 6.4:+16648761 None:intergenic
TTACATAGGTATTGAGCTGA+CGG 0.598207 6.4:+16650714 None:intergenic
GCAGCGGCTGATGATGATTG+TGG 0.600309 6.4:+16650926 None:intergenic
GGATGACTATGACTGTGGAT+AGG 0.617132 6.4:+16649283 None:intergenic
CATACCTTCTCTGCTTCCGT+CGG 0.623107 6.4:+16650901 None:intergenic
GAAACGATCTCATCTGTGGT+GGG 0.626600 6.4:+16650839 None:intergenic
AGAACGCGAGAGAATTCAGG+AGG 0.628084 6.4:+16650779 None:intergenic
CCAAGAAACGATCTCATCTG+TGG 0.633047 6.4:+16650835 None:intergenic
ATGCTGTTCAGACAATGAAG+AGG 0.637659 6.4:-16648759 MS.gene42037:CDS
GAACGCGAGAGAATTCAGGA+GGG 0.662504 6.4:+16650780 None:intergenic
TCTTCAGAAGACGTATGACA+TGG 0.665030 6.4:-16650870 MS.gene42037:CDS
TCTGGATCTACAGTAGAACC+CGG 0.676402 6.4:+16649259 None:intergenic
TGACCCCGTTGATCCAAAGG+AGG 0.688995 6.4:-16648864 MS.gene42037:CDS
GGATCTACAGTAGAACCCGG+AGG 0.764137 6.4:+16649262 None:intergenic
AAGCCTCCTTTGGATCAACG+GGG 0.785647 6.4:+16648861 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCTTTTATAAATTTTTCAT+TGG + chr6.4:16650344-16650363 None:intergenic 10.0%
!! AGAATTAAACAATAAAAATC+AGG + chr6.4:16649988-16650007 None:intergenic 15.0%
!!! ATGTATGTTTTAATTTGTTA+CGG - chr6.4:16650256-16650275 MS.gene42037:intron 15.0%
!! ATATTGAATTATGTCATTGT+CGG + chr6.4:16649352-16649371 None:intergenic 20.0%
!! TGATTAGTAAGATAAGAATT+AGG - chr6.4:16649190-16649209 MS.gene42037:CDS 20.0%
!! TGGAAACTTATAATAAGAAA+AGG - chr6.4:16650680-16650699 MS.gene42037:intron 20.0%
!! TTATCATATTGATATAGTTC+AGG + chr6.4:16649623-16649642 None:intergenic 20.0%
!!! ACTATTTATCATGTTTCTAT+AGG - chr6.4:16649764-16649783 MS.gene42037:intron 20.0%
!!! CTATTTATCATGTTTCTATA+GGG - chr6.4:16649765-16649784 MS.gene42037:intron 20.0%
!!! TTTGTTGTATTTGTATGATT+TGG - chr6.4:16649084-16649103 MS.gene42037:CDS 20.0%
! AAAAAAGTTTGTAGGTCTTA+TGG - chr6.4:16650207-16650226 MS.gene42037:intron 25.0%
! AAATAGAAATCATGCACTTA+TGG - chr6.4:16650089-16650108 MS.gene42037:intron 25.0%
! AATCGTTCAAAAAAGTTTGT+AGG - chr6.4:16650199-16650218 MS.gene42037:intron 25.0%
! ATAATCATATATGTCGTTGT+CGG - chr6.4:16649370-16649389 MS.gene42037:CDS 25.0%
! ATAATTATAGCTTAGGAGTT+CGG + chr6.4:16650509-16650528 None:intergenic 25.0%
! ATATTCAGAGACTAAATTGA+TGG + chr6.4:16649579-16649598 None:intergenic 25.0%
! ATTAGGTACAACTTTAGATT+TGG - chr6.4:16649207-16649226 MS.gene42037:CDS 25.0%
! ATTATAAGTTTCCAAATCCA+TGG + chr6.4:16650674-16650693 None:intergenic 25.0%
! TCACACATTTCATATACTTT+AGG + chr6.4:16649652-16649671 None:intergenic 25.0%
! TCTCAAGATAATTATAGCTT+AGG + chr6.4:16650516-16650535 None:intergenic 25.0%
! TGAGAAATTATAGTGTTGTA+TGG - chr6.4:16649293-16649312 MS.gene42037:CDS 25.0%
! TGATATCTAAGTCATAGATA+GGG - chr6.4:16650061-16650080 MS.gene42037:intron 25.0%
! TTGATATCTAAGTCATAGAT+AGG - chr6.4:16650060-16650079 MS.gene42037:intron 25.0%
AAAAAATTTCTGCAAGCATC+TGG - chr6.4:16649516-16649535 MS.gene42037:intron 30.0%
AGATCAAAAACATCTTCTGA+CGG - chr6.4:16650360-16650379 MS.gene42037:intron 30.0%
ATAACAAAAGCTTCATCGTT+TGG - chr6.4:16648878-16648897 MS.gene42037:CDS 30.0%
ATATAGTTCAGGAACTAAAC+CGG + chr6.4:16649612-16649631 None:intergenic 30.0%
ATTATTGCACTGAGTTTAGT+TGG - chr6.4:16649230-16649249 MS.gene42037:CDS 30.0%
CTTCATCGAATTTCAATTAG+TGG - chr6.4:16649118-16649137 MS.gene42037:CDS 30.0%
CTTCATTACACAAAAACTTC+AGG + chr6.4:16650153-16650172 None:intergenic 30.0%
TAATTCAGGGACTAAATTGA+TGG - chr6.4:16649814-16649833 MS.gene42037:intron 30.0%
TCTGAATATCACACTATTTC+CGG - chr6.4:16649590-16649609 MS.gene42037:intron 30.0%
TGAGATAGGATGATAATTCA+GGG - chr6.4:16649801-16649820 MS.gene42037:intron 30.0%
TTATAGACGCAGTTTCTAAT+TGG + chr6.4:16649950-16649969 None:intergenic 30.0%
TTGAGATAGGATGATAATTC+AGG - chr6.4:16649800-16649819 MS.gene42037:intron 30.0%
! CTATCTCTTTTACCAAAACA+AGG + chr6.4:16649880-16649899 None:intergenic 30.0%
! GAAATTGCTGTGTTTGAAAT+AGG + chr6.4:16648938-16648957 None:intergenic 30.0%
! TAGCATGAATTGACTTACAT+AGG + chr6.4:16648986-16649005 None:intergenic 30.0%
! TATCATGTTTCTATAGGGTA+GGG - chr6.4:16649770-16649789 MS.gene42037:intron 30.0%
! TTATCATGTTTCTATAGGGT+AGG - chr6.4:16649769-16649788 MS.gene42037:intron 30.0%
!!! TAGGTCTTAATTTTTGGTGT+GGG - chr6.4:16649439-16649458 MS.gene42037:intron 30.0%
AAAACTTCAGGAAGCAAATC+TGG + chr6.4:16650141-16650160 None:intergenic 35.0%
AAAATCAGATCCTGATCGTT+GGG - chr6.4:16650312-16650331 MS.gene42037:intron 35.0%
AAATTAAGACCTACGAAGCA+AGG + chr6.4:16649432-16649451 None:intergenic 35.0%
ATCCATCTTTCAACATTCTC+AGG + chr6.4:16649274-16649293 None:intergenic 35.0%
CAAAATCGAATCCATGGATT+TGG - chr6.4:16650660-16650679 MS.gene42037:intron 35.0%
TAAGAAAAGGAGATTGTCTC+AGG - chr6.4:16650693-16650712 MS.gene42037:intron 35.0%
TTCTACTGTAGATCCAGAAA+GGG - chr6.4:16650429-16650448 MS.gene42037:intron 35.0%
TTCTCTCAGAATCTTTCTGA+AGG - chr6.4:16650769-16650788 MS.gene42037:CDS 35.0%
! AAGGAGTGAATGATGTGTTT+TGG - chr6.4:16650878-16650897 MS.gene42037:CDS 35.0%
! AATCCATGGATTCGATTTTG+TGG + chr6.4:16650660-16650679 None:intergenic 35.0%
! AGATTCTGAGAGAAATTGCT+AGG + chr6.4:16650763-16650782 None:intergenic 35.0%
! AGGAGTGAATGATGTGTTTT+GGG - chr6.4:16650879-16650898 MS.gene42037:CDS 35.0%
! ATCCATGGATTCGATTTTGT+GGG + chr6.4:16650659-16650678 None:intergenic 35.0%
! ATTTACGTGTGCTTTTCATC+AGG - chr6.4:16650282-16650301 MS.gene42037:intron 35.0%
! GCTTCGTAGGTCTTAATTTT+TGG - chr6.4:16649433-16649452 MS.gene42037:intron 35.0%
! GTAGGGACTAAATTTGAGAT+AGG - chr6.4:16649787-16649806 MS.gene42037:intron 35.0%
! TCATACGTCTTCTGAAGAAA+CGG + chr6.4:16648811-16648830 None:intergenic 35.0%
! TGCTGTGTTTGAAATAGGTT+GGG + chr6.4:16648933-16648952 None:intergenic 35.0%
! TTGCTGTGTTTGAAATAGGT+TGG + chr6.4:16648934-16648953 None:intergenic 35.0%
! TTTACGTGTGCTTTTCATCA+GGG - chr6.4:16650283-16650302 MS.gene42037:intron 35.0%
! TTTGCAGAACTTCTTTGAGA+AGG - chr6.4:16650600-16650619 MS.gene42037:intron 35.0%
!! TTACATAGGTATTGAGCTGA+CGG + chr6.4:16648972-16648991 None:intergenic 35.0%
!!! GTAGGTCTTAATTTTTGGTG+TGG - chr6.4:16649438-16649457 MS.gene42037:intron 35.0%
AACAGCATGGACTTTCAGTA+AGG + chr6.4:16650912-16650931 None:intergenic 40.0%
ATGCTGTTCAGACAATGAAG+AGG - chr6.4:16650924-16650943 MS.gene42037:CDS 40.0%
CAAAACAAGGACGAGTTGTA+TGG + chr6.4:16649867-16649886 None:intergenic 40.0%
GAAAATCAGATCCTGATCGT+TGG - chr6.4:16650311-16650330 MS.gene42037:intron 40.0%
GACCTGAGAATGTTGAAAGA+TGG - chr6.4:16649269-16649288 MS.gene42037:CDS 40.0%
GTTCACGAATGTGTCATGAA+CGG - chr6.4:16649917-16649936 MS.gene42037:intron 40.0%
GTTCTACTGTAGATCCAGAA+AGG - chr6.4:16650428-16650447 MS.gene42037:intron 40.0%
TCTGAGAGAAATTGCTAGGA+AGG + chr6.4:16650759-16650778 None:intergenic 40.0%
TCTTCAGAAGACGTATGACA+TGG - chr6.4:16648813-16648832 MS.gene42037:CDS 40.0%
TCTTCATTGTCTGAACAGCA+TGG + chr6.4:16650925-16650944 None:intergenic 40.0%
TTCCCACAAAATCGAATCCA+TGG - chr6.4:16650654-16650673 MS.gene42037:intron 40.0%
! TGTGAATTGGTGGGTGATTT+AGG - chr6.4:16649464-16649483 MS.gene42037:intron 40.0%
!! CATACAACTCGTCCTTGTTT+TGG - chr6.4:16649865-16649884 MS.gene42037:intron 40.0%
!! CATCTGGATCTTGGTAATGA+TGG - chr6.4:16649532-16649551 MS.gene42037:intron 40.0%
AAGGTCAACCAAGCTACCTT+CGG + chr6.4:16650740-16650759 None:intergenic 45.0%
ACTTCAGGAAGCAAATCTGG+TGG + chr6.4:16650138-16650157 None:intergenic 45.0%
AGAAACGATCTCATCTGTGG+TGG + chr6.4:16648848-16648867 None:intergenic 45.0%
AGAAGAACGCGAGAGAATTC+AGG + chr6.4:16648910-16648929 None:intergenic 45.0%
AGCTTAGGAGTTCGGATTGA+AGG + chr6.4:16650501-16650520 None:intergenic 45.0%
CCAAGAAACGATCTCATCTG+TGG + chr6.4:16648851-16648870 None:intergenic 45.0%
CCACAGATGAGATCGTTTCT+TGG - chr6.4:16648848-16648867 MS.gene42037:CDS 45.0%
CGTACACATCTCAAGCATCT+AGG - chr6.4:16650012-16650031 MS.gene42037:intron 45.0%
GAAACGATCTCATCTGTGGT+GGG + chr6.4:16648847-16648866 None:intergenic 45.0%
GACTGTGGATAGGTTTCTTG+CGG + chr6.4:16650393-16650412 None:intergenic 45.0%
GCTTAGGAGTTCGGATTGAA+GGG + chr6.4:16650500-16650519 None:intergenic 45.0%
GGATGACTATGACTGTGGAT+AGG + chr6.4:16650403-16650422 None:intergenic 45.0%
TCTGGATCTACAGTAGAACC+CGG + chr6.4:16650427-16650446 None:intergenic 45.0%
TGAAGCCTCCTTTGGATCAA+CGG + chr6.4:16650827-16650846 None:intergenic 45.0%
TGAGACTGAAAAGCTTCAGC+TGG - chr6.4:16650531-16650550 MS.gene42037:intron 45.0%
TTCTGCAAGCATCTGGATCT+TGG - chr6.4:16649523-16649542 MS.gene42037:intron 45.0%
! CTTTCTGAAGGAGAACTGAC+AGG - chr6.4:16650781-16650800 MS.gene42037:CDS 45.0%
! GATTTTCAGCAGCGATTGGA+TGG - chr6.4:16650556-16650575 MS.gene42037:intron 45.0%
! GGAAGATTTTCAGCAGCGAT+TGG - chr6.4:16650552-16650571 MS.gene42037:intron 45.0%
! TCCTTGGATTAGGTGTGTCA+TGG + chr6.4:16649405-16649424 None:intergenic 45.0%
! TTTGGTGTGGGTGTGTGAAT+TGG - chr6.4:16649451-16649470 MS.gene42037:intron 45.0%
AACTGACCCCGTTGATCCAA+AGG - chr6.4:16650816-16650835 MS.gene42037:CDS 50.0%
AAGCCTCCTTTGGATCAACG+GGG + chr6.4:16650825-16650844 None:intergenic 50.0%
ACGTTACCTGAAGCCTCCTT+TGG + chr6.4:16650835-16650854 None:intergenic 50.0%
AGAACGCGAGAGAATTCAGG+AGG + chr6.4:16648907-16648926 None:intergenic 50.0%
AGATCCAGAAAGGGCAGCAT+TGG - chr6.4:16650438-16650457 MS.gene42037:intron 50.0%
CACAGTCATAGTCATCCTCC+GGG - chr6.4:16650406-16650425 MS.gene42037:intron 50.0%
CAGGAAGCAAATCTGGTGGT+GGG + chr6.4:16650134-16650153 None:intergenic 50.0%
CATACCTTCTCTGCTTCCGT+CGG + chr6.4:16648785-16648804 None:intergenic 50.0%
CCACAGTCATAGTCATCCTC+CGG - chr6.4:16650405-16650424 MS.gene42037:intron 50.0%
GAACGCGAGAGAATTCAGGA+GGG + chr6.4:16648906-16648925 None:intergenic 50.0%
GAAGCCTCCTTTGGATCAAC+GGG + chr6.4:16650826-16650845 None:intergenic 50.0%
GATTAGGTGTGTCATGGCGT+CGG + chr6.4:16649399-16649418 None:intergenic 50.0%
GATTGGATGGCATGGAGAAG+AGG - chr6.4:16650569-16650588 MS.gene42037:intron 50.0%
GCAAGGACACTCCTTGGATT+AGG + chr6.4:16649415-16649434 None:intergenic 50.0%
GCCATGACACACCTAATCCA+AGG - chr6.4:16649401-16649420 MS.gene42037:intron 50.0%
GTGTGGGTGTGTGAATTGGT+GGG - chr6.4:16649455-16649474 MS.gene42037:intron 50.0%
GTTGATCCAAAGGAGGCTTC+AGG - chr6.4:16650826-16650845 MS.gene42037:CDS 50.0%
TACGAAGCAAGGACACTCCT+TGG + chr6.4:16649421-16649440 None:intergenic 50.0%
TCAGGAAGCAAATCTGGTGG+TGG + chr6.4:16650135-16650154 None:intergenic 50.0%
TTCTCCAATGCTGCCCTTTC+TGG + chr6.4:16650445-16650464 None:intergenic 50.0%
TTGGCAAACTCCCAACGATC+AGG + chr6.4:16650325-16650344 None:intergenic 50.0%
! AGGAAGCAAATCTGGTGGTG+GGG + chr6.4:16650133-16650152 None:intergenic 50.0%
! ATTGAGCTGACGGATGAAGC+TGG + chr6.4:16648962-16648981 None:intergenic 50.0%
!! AAGGAGTGTCCTTGCTTCGT+AGG - chr6.4:16649420-16649439 MS.gene42037:intron 50.0%
ACCAAGCTACCTTCGGCAAC+AGG + chr6.4:16650733-16650752 None:intergenic 55.0%
CCGGAGGATGACTATGACTG+TGG + chr6.4:16650408-16650427 None:intergenic 55.0%
CGACGGAAGCAGAGAAGGTA+TGG - chr6.4:16648783-16648802 MS.gene42037:CDS 55.0%
GGATCTACAGTAGAACCCGG+AGG + chr6.4:16650424-16650443 None:intergenic 55.0%
GGTGTGGGTGTGTGAATTGG+TGG - chr6.4:16649454-16649473 MS.gene42037:intron 55.0%
TCAGCAGCGATTGGATGGCA+TGG - chr6.4:16650561-16650580 MS.gene42037:intron 55.0%
TCCAAGTCGAAGCAGCTGCT+CGG - chr6.4:16650854-16650873 MS.gene42037:CDS 55.0%
TGACCCCGTTGATCCAAAGG+AGG - chr6.4:16650819-16650838 MS.gene42037:CDS 55.0%
! GCAGCGGCTGATGATGATTG+TGG + chr6.4:16648760-16648779 None:intergenic 55.0%
CACATGCAGCCTGTTGCCGA+AGG - chr6.4:16650721-16650740 MS.gene42037:CDS 60.0%
GCCTGTTGCCGAAGGTAGCT+TGG - chr6.4:16650729-16650748 MS.gene42037:CDS 60.0%
GCCGAGCAGCTGCTTCGACT+TGG + chr6.4:16650858-16650877 None:intergenic 65.0%
GCTGCCGACGGAAGCAGAGA+AGG - chr6.4:16648778-16648797 MS.gene42037:CDS 65.0%
GTCGAAGCAGCTGCTCGGCA+AGG - chr6.4:16650859-16650878 MS.gene42037:CDS 65.0%
TCATCAGCCGCTGCTGCCGA+CGG - chr6.4:16648766-16648785 MS.gene42037:CDS 65.0%
TCTGCTTCCGTCGGCAGCAG+CGG + chr6.4:16648776-16648795 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr6.4 gene 16648745 16650960 16648745 ID=MS.gene42037
chr6.4 mRNA 16648745 16650960 16648745 ID=MS.gene42037.t1;Parent=MS.gene42037
chr6.4 exon 16650718 16650960 16650718 ID=MS.gene42037.t1.exon1;Parent=MS.gene42037.t1
chr6.4 CDS 16650718 16650960 16650718 ID=cds.MS.gene42037.t1;Parent=MS.gene42037.t1
chr6.4 exon 16648745 16649401 16648745 ID=MS.gene42037.t1.exon2;Parent=MS.gene42037.t1
chr6.4 CDS 16648745 16649401 16648745 ID=cds.MS.gene42037.t1;Parent=MS.gene42037.t1
Gene Sequence

>MS.gene42037

ATGAATTCTGCACCACAATCATCATCAGCCGCTGCTGCCGACGGAAGCAGAGAAGGTATGGCACCGTTTCTTCAGAAGACGTATGACATGGTAGATGATCCCACCACAGATGAGATCGTTTCTTGGAGCTCTGATAACAAAAGCTTCATCGTTTGGAACCCTCCTGAATTCTCTCGCGTTCTTCTCCCAACCTATTTCAAACACAGCAATTTCTCCAGCTTCATCCGTCAGCTCAATACCTATGTAAGTCAATTCATGCTATAAGCTTCTTTTGATTATTTCATTGTTACTTTGTATGATCAATTAGTTATTGTCTTTCACTGTGTTTTTGCTTGATTGTTTGTTGTATTTGTATGATTTGGTTTCATTGTGTCTTCATCGAATTTCAATTAGTGGATATTGATTATTATGATGATCGTGATCATTAAGAGATTGATGAAAAAAGTGATTAGTAAGATAAGAATTAGGTACAACTTTAGATTTGGATTATTGCACTGAGTTTAGTTGGAGATACAAAATGTTGAGACCTGAGAATGTTGAAAGATGGATGAGAAATTATAGTGTTGTATGGCACTTTTATTCTATGAAACATAAAACAGAGACACCGACAATGACATAATTCAATATAATCATATATGTCGTTGTCGGACACCGACGCCATGACACACCTAATCCAAGGAGTGTCCTTGCTTCGTAGGTCTTAATTTTTGGTGTGGGTGTGTGAATTGGTGGGTGATTTAGGACTCTAAATGCACTCAAGAAAAACGATCAAAAAAATTTCTGCAAGCATCTGGATCTTGGTAATGATGGTACATCGAATCATGAATAAAACCATCAATTTAGTCTCTGAATATCACACTATTTCCGGTTTAGTTCCTGAACTATATCAATATGATAAGTAGTTCCTAAAGTATATGAAATGTGTGAATTCAATCTTTGAAGTATACTGAAATTCGTCAATTTTGTCTCTAACATCTTAATTGTTGTGACTAAATTGATGAGTTTCATATACTTTAGAGACTATTTATCATGTTTCTATAGGGTAGGGACTAAATTTGAGATAGGATGATAATTCAGGGACTAAATTGATGGTTTACATTCAGTGATCAAATAAATGTGCCATACAACTCGTCCTTGTTTTGGTAAAAGAGATAGAGCGATACAACAAAGAAGTTCACGAATGTGTCATGAACGGAAAATGTCCAATTAGAAACTGCGTCTATAAATATGATAAGTAGTTCCTGATTTTTATTGTTTAATTCTGCATCGTACACATCTCAAGCATCTAGGTTTTCATTTATTGAACTTGTTGAAATTGATATCTAAGTCATAGATAGGGTTGAAAAATAGAAATCATGCACTTATGGCAATGATTAAAAACTAAGCCCCACCACCAGATTTGCTTCCTGAAGTTTTTGTGTAATGAAGAATATTCTTGTAGAGATTTAATATTAAATCGTTCAAAAAAGTTTGTAGGTCTTATGGCTGTAATGATAAATAATTGTTTAAGAATGTATGTTTTAATTTGTTACGGTTTATTTACGTGTGCTTTTCATCAGGGATTTCGAAAATCAGATCCTGATCGTTGGGAGTTTGCCAATGAAAAATTTATAAAAGATCAAAAACATCTTCTGACGGATATACACCGCAAGAAACCTATCCACAGTCATAGTCATCCTCCGGGTTCTACTGTAGATCCAGAAAGGGCAGCATTGGAGAAAGAAATAGAGAAGCTGTTTCGCGCGAAAAATGCCCTTCAATCCGAACTCCTAAGCTATAATTATCTTGAGACTGAAAAGCTTCAGCTGGAAGATTTTCAGCAGCGATTGGATGGCATGGAGAAGAGGCAGACAAATTTGCAGAACTTCTTTGAGAAGGCTCTTCAAGATTCTTTTATTGTTGAACTTCTTTCCCACAAAATCGAATCCATGGATTTGGAAACTTATAATAAGAAAAGGAGATTGTCTCAGGTTGATCACATGCAGCCTGTTGCCGAAGGTAGCTTGGTTGACCTTCCTAGCAATTTCTCTCAGAATCTTTCTGAAGGAGAACTGACAGGAATACAGACAAGAACTGACCCCGTTGATCCAAAGGAGGCTTCAGGTAACGTCCAAGTCGAAGCAGCTGCTCGGCAAGGAGTGAATGATGTGTTTTGGGAACAATTCCTTACTGAAAGTCCATGCTGTTCAGACAATGAAGAGGAAATGTTCAACTAA
Protein sequence

>MS.gene42037.t1

MNSAPQSSSAAAADGSREGMAPFLQKTYDMVDDPTTDEIVSWSSDNKSFIVWNPPEFSRVLLPTYFKHSNFSSFIRQLNTYGFRKSDPDRWEFANEKFIKDQKHLLTDIHRKKPIHSHSHPPGSTVDPERAALEKEIEKLFRAKNALQSELLSYNYLETEKLQLEDFQQRLDGMEKRQTNLQNFFEKALQDSFIVELLSHKIESMDLETYNKKRRLSQVDHMQPVAEGSLVDLPSNFSQNLSEGELTGIQTRTDPVDPKEASGNVQVEAAARQGVNDVFWEQFLTESPCCSDNEEEMFN