AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene42038

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene42038.t1 MTR_6g043060 70.642 327 66 2 1 297 1 327 3.57e-165 462
MS.gene42038.t1 MTR_8g083100 75.273 275 24 1 23 253 23 297 2.68e-145 417
MS.gene42038.t1 MTR_8g083100 80.952 42 8 0 258 299 416 457 4.54e-15 75.5
MS.gene42038.t1 MTR_2g100680 57.525 299 80 3 1 254 12 308 2.81e-112 332
MS.gene42038.t1 MTR_6g044340 63.281 256 70 2 68 299 8 263 1.49e-108 316
MS.gene42038.t1 MTR_2g100670 55.124 283 95 6 1 254 14 293 6.17e-95 283
MS.gene42038.t1 MTR_2g100670 55.124 283 95 6 1 254 122 401 3.08e-93 282
MS.gene42038.t1 MTR_5g029680 50.237 211 91 4 22 218 32 242 3.59e-64 210
MS.gene42038.t1 MTR_8g087540 42.123 292 146 7 15 293 5 286 3.54e-59 194
MS.gene42038.t1 MTR_4g077970 44.498 209 104 3 20 216 10 218 6.71e-55 185
MS.gene42038.t1 MTR_6g044430 47.177 248 43 5 100 295 14 225 4.50e-54 176
MS.gene42038.t1 MTR_3g104550 44.118 204 108 3 19 217 43 245 7.31e-52 174
MS.gene42038.t1 MTR_6g044440 53.631 179 30 2 174 299 1 179 1.22e-51 168
MS.gene42038.t1 MTR_1g102860 43.049 223 110 6 7 215 20 239 7.40e-51 171
MS.gene42038.t1 MTR_7g095680 44.928 207 104 4 19 215 46 252 7.79e-50 169
MS.gene42038.t1 MTR_1g061170 40.000 200 117 2 20 216 47 246 1.80e-46 162
MS.gene42038.t1 MTR_1g071360 40.092 217 118 3 22 233 32 241 4.62e-46 159
MS.gene42038.t1 MTR_1g071360 37.344 241 135 4 22 253 29 262 5.95e-46 159
MS.gene42038.t1 MTR_8g105780 38.908 293 148 11 20 293 20 300 9.47e-45 156
MS.gene42038.t1 MTR_3g101870 66.667 102 34 0 12 113 14 115 1.05e-44 155
MS.gene42038.t1 MTR_5g017470 61.321 106 41 0 17 122 4 109 2.02e-42 147
MS.gene42038.t1 MTR_6g086805 40.187 214 101 2 20 219 9 209 2.68e-42 149
MS.gene42038.t1 MTR_5g010680 60.185 108 43 0 6 113 8 115 6.04e-42 148
MS.gene42038.t1 MTR_5g089170 68.817 93 29 0 21 113 24 116 8.84e-42 145
MS.gene42038.t1 MTR_6g044350 55.479 146 31 3 174 285 1 146 1.14e-40 139
MS.gene42038.t1 MTR_2g017890 58.333 108 45 0 12 119 5 112 1.86e-40 145
MS.gene42038.t1 MTR_0020s0020 62.366 93 35 0 21 113 32 124 5.52e-38 137
MS.gene42038.t1 MTR_1g100777 38.889 180 91 3 21 185 17 192 9.73e-38 135
MS.gene42038.t1 MTR_7g091370 50.442 113 56 0 1 113 1 113 3.53e-37 132
MS.gene42038.t1 MTR_4g088900 57.732 97 37 1 21 113 32 128 5.24e-34 123
MS.gene42038.t1 MTR_5g047190 45.361 97 46 2 30 119 1 97 8.48e-22 88.2
MS.gene42038.t1 MTR_4g045757 60.870 69 26 1 12 79 3 71 6.09e-21 85.1
MS.gene42038.t1 MTR_6g044510 61.972 71 19 1 237 299 18 88 1.01e-20 85.1
MS.gene42038.t1 MTR_6g044500 48.780 82 16 3 205 261 1 81 4.33e-13 64.3
MS.gene42038.t1 MTR_1g061170 29.560 159 101 4 61 216 1 151 6.49e-13 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene42038.t1 AT4G13980 55.128 234 103 2 1 232 1 234 3.55e-84 261
MS.gene42038.t1 AT4G17750 47.685 216 92 4 22 216 52 267 5.78e-59 196
MS.gene42038.t1 AT1G32330 45.957 235 108 5 1 216 16 250 1.87e-58 194
MS.gene42038.t1 AT1G32330 45.957 235 108 5 1 216 16 250 2.04e-58 194
MS.gene42038.t1 AT5G16820 47.867 211 95 5 20 216 25 234 4.70e-58 193
MS.gene42038.t1 AT5G16820 47.867 211 95 5 20 216 25 234 4.70e-58 193
MS.gene42038.t1 AT3G02990 42.918 233 120 4 8 228 9 240 6.92e-58 192
MS.gene42038.t1 AT5G45710 37.821 312 155 8 14 295 5 307 3.45e-54 180
MS.gene42038.t1 AT5G45710 37.821 312 155 8 14 295 5 307 3.45e-54 180
MS.gene42038.t1 AT4G18880 47.867 211 100 3 16 220 9 215 8.91e-52 175
MS.gene42038.t1 AT2G26150 42.342 222 120 4 19 232 41 262 1.24e-50 171
MS.gene42038.t1 AT2G26150 42.342 222 120 4 19 232 41 262 1.24e-50 171
MS.gene42038.t1 AT3G51910 41.706 211 106 5 22 226 29 228 3.72e-47 159
MS.gene42038.t1 AT3G22830 39.815 216 117 3 19 221 58 273 6.28e-47 162
MS.gene42038.t1 AT3G24520 46.243 173 73 3 20 191 15 168 2.64e-45 156
MS.gene42038.t1 AT5G03720 41.089 202 111 3 20 213 53 254 2.95e-45 158
MS.gene42038.t1 AT5G03720 41.089 202 111 3 20 213 53 254 2.95e-45 158
MS.gene42038.t1 AT1G46264 62.500 112 32 1 21 122 33 144 3.73e-44 154
MS.gene42038.t1 AT1G67970 44.271 192 94 5 20 201 17 205 1.46e-43 153
MS.gene42038.t1 AT5G43840 41.711 187 97 3 21 205 18 194 9.46e-42 145
MS.gene42038.t1 AT5G54070 42.077 183 100 2 20 201 69 246 2.11e-40 144
MS.gene42038.t1 AT3G63350 31.333 300 171 9 5 295 3 276 5.58e-39 138
MS.gene42038.t1 AT4G11660 61.000 100 39 0 14 113 51 150 1.57e-38 140
MS.gene42038.t1 AT4G36990 56.604 106 46 0 10 115 2 107 4.02e-38 136
MS.gene42038.t1 AT5G62020 49.580 119 59 1 1 118 1 119 3.99e-37 134
MS.gene42038.t1 AT2G41690 51.304 115 56 0 22 136 40 154 1.14e-36 131
MS.gene42038.t1 AT4G18870 46.591 88 47 0 22 109 146 233 1.32e-22 95.5
MS.gene42038.t1 AT4G18870 45.833 96 51 1 14 109 5 99 2.14e-22 94.7
MS.gene42038.t1 AT1G77570 42.391 92 49 3 19 106 22 113 8.96e-17 76.3
MS.gene42038.t1 AT2G26150 32.075 159 100 4 82 232 49 207 7.10e-16 76.6
MS.gene42038.t1 AT2G26150 32.075 159 100 4 82 232 49 207 7.10e-16 76.6
MS.gene42038.t1 AT4G19630 34.021 97 61 1 19 112 8 104 2.55e-13 66.2

Find 71 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTCCAATGCTGCCCTTTC+TGG -0.010683 6.4:+16627527 None:intergenic
CTTCTTTGAGAAGGCTCTTC+AGG 0.211830 6.4:-16627360 MS.gene42038:CDS
ATAATTATAGCTTAAGAGTT+TGG 0.284728 6.4:+16627463 None:intergenic
GAAATTGCTGTGTTTGAAAT+AGG 0.299469 6.4:+16628728 None:intergenic
CCACAGATGAGATCGTTTCT+TGG 0.319260 6.4:-16628815 MS.gene42038:CDS
CAAAATCGAATCCATGGATT+TGG 0.330894 6.4:-16627309 MS.gene42038:CDS
AAGGAGTGAATGATGTGTTT+TGG 0.360172 6.4:-16627091 MS.gene42038:CDS
ATAACAAAAGCTTCATCGTT+TGG 0.362747 6.4:-16628785 MS.gene42038:CDS
GTCTGAACAGCATGGACTTT+CGG 0.368229 6.4:+16627055 None:intergenic
AGAAGAACGCGAGAGAATTC+AGG 0.373908 6.4:+16628756 None:intergenic
ACGTTACCTGAAGCCTCCTT+TGG 0.398346 6.4:+16627137 None:intergenic
GAAGCCTCCTTTGGATCAAC+GGG 0.411360 6.4:+16627146 None:intergenic
TAAGAAAAGGCGATTGTCTC+AGG 0.414889 6.4:-16627276 MS.gene42038:CDS
ACCAAGCTACCTTCGGCAAC+AGG 0.417714 6.4:+16627239 None:intergenic
AGCTTAAGAGTTTGGATTGA+AGG 0.419735 6.4:+16627471 None:intergenic
TGGAAACTTATAATAAGAAA+AGG 0.461564 6.4:-16627289 MS.gene42038:CDS
GCCGAGCAGCTGCTTCGACT+TGG 0.465666 6.4:+16627114 None:intergenic
CCACAGTCATAGTCATCCTC+CGG 0.469987 6.4:-16627564 MS.gene42038:CDS
AAAATCAGATCCTGATCGTT+GGG 0.473476 6.4:-16627657 MS.gene42038:CDS
TTCCCGCAAAATCGAATCCA+TGG 0.478636 6.4:-16627315 MS.gene42038:CDS
TTGGCAAACTCCCAACGATC+AGG 0.478885 6.4:+16627647 None:intergenic
TTGCTGTGTTTGAAATAGGC+TGG 0.480359 6.4:+16628732 None:intergenic
GCTTAAGAGTTTGGATTGAA+GGG 0.480417 6.4:+16627472 None:intergenic
ATTATAAGTTTCCAAATCCA+TGG 0.481800 6.4:+16627298 None:intergenic
GTTGATCCAAAGGAGGCTTC+AGG 0.485386 6.4:-16627143 MS.gene42038:CDS
AGATCCAGAAAGGGCAGCAT+TGG 0.494908 6.4:-16627531 MS.gene42038:CDS
CGACGGAAGCAGAGAAGGTA+TGG 0.499479 6.4:-16628880 MS.gene42038:CDS
TGAGACAGAAAAGCTTCAGC+TGG 0.500611 6.4:-16627438 MS.gene42038:CDS
ATTGAGCTGACGGATGAAGC+TGG 0.506271 6.4:+16628704 None:intergenic
TTTGCAGAACTTCTTTGAGA+AGG 0.509914 6.4:-16627369 MS.gene42038:CDS
GCCTGTTGCCGAAGGTAGCT+TGG 0.510527 6.4:-16627240 MS.gene42038:CDS
TTCTCTCAGAATCTTTCTGA+AGG 0.511282 6.4:-16627200 MS.gene42038:CDS
AACTGACCCCGTTGATCCAA+AGG 0.528185 6.4:-16627153 MS.gene42038:CDS
CTTTCTGAAGGAGAACTGAC+AGG 0.534056 6.4:-16627188 MS.gene42038:CDS
GTCGAAGCAGCTGCTCGGCA+AGG 0.540320 6.4:-16627110 MS.gene42038:CDS
AAGGTCAACCAAGCTACCTT+CGG 0.541708 6.4:+16627232 None:intergenic
TCTGAGAGAAATTGCTAGGA+AGG 0.542451 6.4:+16627213 None:intergenic
GAAAATCAGATCCTGATCGT+TGG 0.543561 6.4:-16627658 MS.gene42038:CDS
TCATACGTCTTCTGAAGAAA+CGG 0.543831 6.4:+16628855 None:intergenic
TCATCAGCCGCTGCTGCCGA+CGG 0.546634 6.4:-16628897 MS.gene42038:CDS
TCCAAGTCGAAGCAGCTGCT+CGG 0.548536 6.4:-16627115 MS.gene42038:CDS
TGAAGCCTCCTTTGGATCAA+CGG 0.548927 6.4:+16627145 None:intergenic
TCAGCGGCGATTGGAAGGCA+TGG 0.549084 6.4:-16627408 MS.gene42038:CDS
CCGGAGGATGACTATGACTG+TGG 0.551542 6.4:+16627564 None:intergenic
TCTGCTTCCGTCGGCAGCAG+CGG 0.553780 6.4:+16628890 None:intergenic
GCTGCCGACGGAAGCAGAGA+AGG 0.554788 6.4:-16628885 MS.gene42038:CDS
CACAGTCATAGTCATCCTCC+GGG 0.559092 6.4:-16627563 MS.gene42038:CDS
TTCTGCTGTAGATCCAGAAA+GGG 0.565003 6.4:-16627540 MS.gene42038:CDS
AGATTCTGAGAGAAATTGCT+AGG 0.568077 6.4:+16627209 None:intergenic
GTTCTGCTGTAGATCCAGAA+AGG 0.569845 6.4:-16627541 MS.gene42038:CDS
GACTGTGGATAGGTTTCTTG+CGG 0.574041 6.4:+16627579 None:intergenic
TGCTGTGTTTGAAATAGGCT+GGG 0.577118 6.4:+16628733 None:intergenic
AGAAACGATCTCATCTGTGG+TGG 0.582151 6.4:+16628818 None:intergenic
AACAGCATGGACTTTCGGTA+AGG 0.583587 6.4:+16627060 None:intergenic
GATTGGAAGGCATGGAGAAG+AGG 0.593047 6.4:-16627400 MS.gene42038:CDS
CACATGCAGCCTGTTGCCGA+AGG 0.596050 6.4:-16627248 MS.gene42038:CDS
TCTTCATTGTCTGAACAGCA+TGG 0.597736 6.4:+16627047 None:intergenic
TTACATAGGTATTGAGCTGA+CGG 0.598207 6.4:+16628694 None:intergenic
GCAGCGGCTGATGATGATTG+TGG 0.600309 6.4:+16628906 None:intergenic
TCTGGATCTACAGCAGAACC+CGG 0.614712 6.4:+16627545 None:intergenic
GGATGACTATGACTGTGGAT+AGG 0.617132 6.4:+16627569 None:intergenic
CATACCTTCTCTGCTTCCGT+CGG 0.623107 6.4:+16628881 None:intergenic
GAAACGATCTCATCTGTGGT+GGG 0.626600 6.4:+16628819 None:intergenic
AGAACGCGAGAGAATTCAGG+AGG 0.628084 6.4:+16628759 None:intergenic
CCAAGAAACGATCTCATCTG+TGG 0.633047 6.4:+16628815 None:intergenic
ATGCTGTTCAGACAATGAAG+AGG 0.637659 6.4:-16627045 MS.gene42038:CDS
GAACGCGAGAGAATTCAGGA+GGG 0.662504 6.4:+16628760 None:intergenic
TCTTCAGAAGACGTATGACA+TGG 0.665030 6.4:-16628850 MS.gene42038:CDS
TGACCCCGTTGATCCAAAGG+AGG 0.688995 6.4:-16627150 MS.gene42038:CDS
GGATCTACAGCAGAACCCGG+AGG 0.744225 6.4:+16627548 None:intergenic
AAGCCTCCTTTGGATCAACG+GGG 0.785647 6.4:+16627147 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCTTTTATAAATTTTTCAT+TGG + chr6.4:16628324-16628343 None:intergenic 10.0%
!!! ATGTATGTTTTAATTTGTTA+CGG - chr6.4:16628236-16628255 MS.gene42038:intron 15.0%
!! AGGATTAAACAATAAAAATC+AGG + chr6.4:16627969-16627988 None:intergenic 20.0%
!! ATAATTATAGCTTAAGAGTT+TGG + chr6.4:16628489-16628508 None:intergenic 20.0%
!! ATATTCTTGTAGAGATTTAA+TGG - chr6.4:16628161-16628180 MS.gene42038:intron 20.0%
!! ATTATTTCATTGAGTTTAGT+TGG - chr6.4:16627516-16627535 MS.gene42038:CDS 20.0%
!! CTTTATTAAACAAAAACTTC+AGG + chr6.4:16628140-16628159 None:intergenic 20.0%
!! TGATTAGTAAGATAAGAATT+AGG - chr6.4:16627476-16627495 MS.gene42038:CDS 20.0%
!! TGGAAACTTATAATAAGAAA+AGG - chr6.4:16628660-16628679 MS.gene42038:intron 20.0%
!!! TTTGTTGTATTTGTATGATT+TGG - chr6.4:16627370-16627389 MS.gene42038:CDS 20.0%
! AAATAGAAATCATGCACTTA+TGG - chr6.4:16628081-16628100 MS.gene42038:intron 25.0%
! AATGGTAAATCGTTCAAAAT+AGG - chr6.4:16628179-16628198 MS.gene42038:intron 25.0%
! ATATAGTTCAAGAACTAAAC+CGG + chr6.4:16627929-16627948 None:intergenic 25.0%
! ATATTCAGAGACTAAATTGA+TGG + chr6.4:16627896-16627915 None:intergenic 25.0%
! ATTAGGTACAACTTTAGATT+TGG - chr6.4:16627493-16627512 MS.gene42038:CDS 25.0%
! ATTATAAGTTTCCAAATCCA+TGG + chr6.4:16628654-16628673 None:intergenic 25.0%
! TGATATCTAAGTCTTAGATA+GGG - chr6.4:16628053-16628072 MS.gene42038:intron 25.0%
! TTCAGTATAATCATATGTGT+CGG - chr6.4:16627682-16627701 MS.gene42038:intron 25.0%
! TTGATATCTAAGTCTTAGAT+AGG - chr6.4:16628052-16628071 MS.gene42038:intron 25.0%
!!! TGAGATATTATAGTCTTGTA+TGG - chr6.4:16627579-16627598 MS.gene42038:CDS 25.0%
AAAAAAATTTCTGCAGCATC+TGG - chr6.4:16627833-16627852 MS.gene42038:intron 30.0%
AGATCAAAAACATCTTCTGA+CGG - chr6.4:16628340-16628359 MS.gene42038:intron 30.0%
ATAACAAAAGCTTCATCGTT+TGG - chr6.4:16627164-16627183 MS.gene42038:CDS 30.0%
ATCGTTCAAAATAGGTCTTA+TGG - chr6.4:16628187-16628206 MS.gene42038:intron 30.0%
CTTCATCGAATTTCAATTAG+TGG - chr6.4:16627404-16627423 MS.gene42038:CDS 30.0%
TCTGAATATCACACTATTTC+CGG - chr6.4:16627907-16627926 MS.gene42038:intron 30.0%
! GAAATTGCTGTGTTTGAAAT+AGG + chr6.4:16627224-16627243 None:intergenic 30.0%
!! TTTACGTGTGCTTTTTATCA+GGG - chr6.4:16628263-16628282 MS.gene42038:intron 30.0%
AAAACTTCAGGAAGCAAATC+TGG + chr6.4:16628128-16628147 None:intergenic 35.0%
AAAATCAGATCCTGATCGTT+GGG - chr6.4:16628292-16628311 MS.gene42038:intron 35.0%
AAATTAAGACCTACGAAGCA+AGG + chr6.4:16627750-16627769 None:intergenic 35.0%
AGCTTAAGAGTTTGGATTGA+AGG + chr6.4:16628481-16628500 None:intergenic 35.0%
CAAAATCGAATCCATGGATT+TGG - chr6.4:16628640-16628659 MS.gene42038:intron 35.0%
GACATGAGAATGTTGAAAGA+TGG - chr6.4:16627555-16627574 MS.gene42038:CDS 35.0%
GCTTAAGAGTTTGGATTGAA+GGG + chr6.4:16628480-16628499 None:intergenic 35.0%
TTCTCTCAGAATCTTTCTGA+AGG - chr6.4:16628749-16628768 MS.gene42038:CDS 35.0%
! AAGGAGTGAATGATGTGTTT+TGG - chr6.4:16628858-16628877 MS.gene42038:CDS 35.0%
! AATCCATGGATTCGATTTTG+CGG + chr6.4:16628640-16628659 None:intergenic 35.0%
! AGATTCTGAGAGAAATTGCT+AGG + chr6.4:16628743-16628762 None:intergenic 35.0%
! AGGAGTGAATGATGTGTTTT+GGG - chr6.4:16628859-16628878 MS.gene42038:CDS 35.0%
! GCTTCGTAGGTCTTAATTTT+CGG - chr6.4:16627751-16627770 MS.gene42038:intron 35.0%
! TAGCGTGAATTGACTTACAT+AGG + chr6.4:16627272-16627291 None:intergenic 35.0%
! TCATACGTCTTCTGAAGAAA+CGG + chr6.4:16627097-16627116 None:intergenic 35.0%
! TTTGCAGAACTTCTTTGAGA+AGG - chr6.4:16628580-16628599 MS.gene42038:intron 35.0%
!! GTTTACGTGTGCTTTTTATC+AGG - chr6.4:16628262-16628281 MS.gene42038:intron 35.0%
!! TAGGTCTTAATTTTCGGTGT+GGG - chr6.4:16627757-16627776 MS.gene42038:intron 35.0%
!! TTACATAGGTATTGAGCTGA+CGG + chr6.4:16627258-16627277 None:intergenic 35.0%
ATGCTGTTCAGACAATGAAG+AGG - chr6.4:16628904-16628923 MS.gene42038:CDS 40.0%
GAAAATCAGATCCTGATCGT+TGG - chr6.4:16628291-16628310 MS.gene42038:intron 40.0%
TAAGAAAAGGCGATTGTCTC+AGG - chr6.4:16628673-16628692 MS.gene42038:intron 40.0%
TCTGAGAGAAATTGCTAGGA+AGG + chr6.4:16628739-16628758 None:intergenic 40.0%
TCTTCAGAAGACGTATGACA+TGG - chr6.4:16627099-16627118 MS.gene42038:CDS 40.0%
TCTTCATTGTCTGAACAGCA+TGG + chr6.4:16628905-16628924 None:intergenic 40.0%
TTCTGCTGTAGATCCAGAAA+GGG - chr6.4:16628409-16628428 MS.gene42038:intron 40.0%
! ATCCATGGATTCGATTTTGC+GGG + chr6.4:16628639-16628658 None:intergenic 40.0%
! GTAGGTCTTAATTTTCGGTG+TGG - chr6.4:16627756-16627775 MS.gene42038:intron 40.0%
! TGCTGTGTTTGAAATAGGCT+GGG + chr6.4:16627219-16627238 None:intergenic 40.0%
! TGTGAATTGGTGGGTGATTT+AGG - chr6.4:16627782-16627801 MS.gene42038:intron 40.0%
! TTCAGCTGGAAGATTTTCAG+CGG - chr6.4:16628525-16628544 MS.gene42038:intron 40.0%
! TTGCTGTGTTTGAAATAGGC+TGG + chr6.4:16627220-16627239 None:intergenic 40.0%
!! CATCTGGATCTTGGTAATGA+TGG - chr6.4:16627849-16627868 MS.gene42038:intron 40.0%
AACAGCATGGACTTTCGGTA+AGG + chr6.4:16628892-16628911 None:intergenic 45.0%
AAGGTCAACCAAGCTACCTT+CGG + chr6.4:16628720-16628739 None:intergenic 45.0%
ACTTCAGGAAGCAAATCTGG+CGG + chr6.4:16628125-16628144 None:intergenic 45.0%
AGAAACGATCTCATCTGTGG+TGG + chr6.4:16627134-16627153 None:intergenic 45.0%
AGAAGAACGCGAGAGAATTC+AGG + chr6.4:16627196-16627215 None:intergenic 45.0%
CCAAGAAACGATCTCATCTG+TGG + chr6.4:16627137-16627156 None:intergenic 45.0%
CCACAGATGAGATCGTTTCT+TGG - chr6.4:16627134-16627153 MS.gene42038:CDS 45.0%
CGTAGACATCTCAAGCATCT+AGG - chr6.4:16628004-16628023 MS.gene42038:intron 45.0%
GAAACGATCTCATCTGTGGT+GGG + chr6.4:16627133-16627152 None:intergenic 45.0%
GACTGTGGATAGGTTTCTTG+CGG + chr6.4:16628373-16628392 None:intergenic 45.0%
GGATGACTATGACTGTGGAT+AGG + chr6.4:16628383-16628402 None:intergenic 45.0%
GTCTGAACAGCATGGACTTT+CGG + chr6.4:16628897-16628916 None:intergenic 45.0%
GTTCTGCTGTAGATCCAGAA+AGG - chr6.4:16628408-16628427 MS.gene42038:intron 45.0%
TGAAGCCTCCTTTGGATCAA+CGG + chr6.4:16628807-16628826 None:intergenic 45.0%
TGAGACAGAAAAGCTTCAGC+TGG - chr6.4:16628511-16628530 MS.gene42038:intron 45.0%
TTCCCGCAAAATCGAATCCA+TGG - chr6.4:16628634-16628653 MS.gene42038:intron 45.0%
TTTCTGCAGCATCTGGATCT+TGG - chr6.4:16627840-16627859 MS.gene42038:intron 45.0%
! CTTCTTTGAGAAGGCTCTTC+AGG - chr6.4:16628589-16628608 MS.gene42038:intron 45.0%
! CTTTCTGAAGGAGAACTGAC+AGG - chr6.4:16628761-16628780 MS.gene42038:CDS 45.0%
AACTGACCCCGTTGATCCAA+AGG - chr6.4:16628796-16628815 MS.gene42038:CDS 50.0%
AAGCCTCCTTTGGATCAACG+GGG + chr6.4:16628805-16628824 None:intergenic 50.0%
ACGTTACCTGAAGCCTCCTT+TGG + chr6.4:16628815-16628834 None:intergenic 50.0%
AGAACGCGAGAGAATTCAGG+AGG + chr6.4:16627193-16627212 None:intergenic 50.0%
AGATCCAGAAAGGGCAGCAT+TGG - chr6.4:16628418-16628437 MS.gene42038:intron 50.0%
CACAGTCATAGTCATCCTCC+GGG - chr6.4:16628386-16628405 MS.gene42038:intron 50.0%
CATACCTTCTCTGCTTCCGT+CGG + chr6.4:16627071-16627090 None:intergenic 50.0%
CCACAGTCATAGTCATCCTC+CGG - chr6.4:16628385-16628404 MS.gene42038:intron 50.0%
CTACGATGCAGAAGAGAAGC+AGG + chr6.4:16627989-16628008 None:intergenic 50.0%
GAACGCGAGAGAATTCAGGA+GGG + chr6.4:16627192-16627211 None:intergenic 50.0%
GAAGCCTCCTTTGGATCAAC+GGG + chr6.4:16628806-16628825 None:intergenic 50.0%
GCAAGGACACTCCTCAGATT+AGG + chr6.4:16627733-16627752 None:intergenic 50.0%
GTGTGGGTGTGTGAATTGGT+GGG - chr6.4:16627773-16627792 MS.gene42038:intron 50.0%
GTTGATCCAAAGGAGGCTTC+AGG - chr6.4:16628806-16628825 MS.gene42038:CDS 50.0%
TCCTCAGATTAGGTGTGTCC+TGG + chr6.4:16627723-16627742 None:intergenic 50.0%
TCTGGATCTACAGCAGAACC+CGG + chr6.4:16628407-16628426 None:intergenic 50.0%
TTCTCCAATGCTGCCCTTTC+TGG + chr6.4:16628425-16628444 None:intergenic 50.0%
TTGGCAAACTCCCAACGATC+AGG + chr6.4:16628305-16628324 None:intergenic 50.0%
! ATTGAGCTGACGGATGAAGC+TGG + chr6.4:16627248-16627267 None:intergenic 50.0%
! GATTGGAAGGCATGGAGAAG+AGG - chr6.4:16628549-16628568 MS.gene42038:intron 50.0%
! GATTTTCAGCGGCGATTGGA+AGG - chr6.4:16628536-16628555 MS.gene42038:intron 50.0%
! GGAAGATTTTCAGCGGCGAT+TGG - chr6.4:16628532-16628551 MS.gene42038:intron 50.0%
! TTCGGTGTGGGTGTGTGAAT+TGG - chr6.4:16627769-16627788 MS.gene42038:intron 50.0%
ACCAAGCTACCTTCGGCAAC+AGG + chr6.4:16628713-16628732 None:intergenic 55.0%
AGGAAGCAAATCTGGCGGTG+GGG + chr6.4:16628120-16628139 None:intergenic 55.0%
CAGGAAGCAAATCTGGCGGT+GGG + chr6.4:16628121-16628140 None:intergenic 55.0%
CCGGAGGATGACTATGACTG+TGG + chr6.4:16628388-16628407 None:intergenic 55.0%
CGACGGAAGCAGAGAAGGTA+TGG - chr6.4:16627069-16627088 MS.gene42038:CDS 55.0%
GATTAGGTGTGTCCTGGCGT+CGG + chr6.4:16627717-16627736 None:intergenic 55.0%
GCCAGGACACACCTAATCTG+AGG - chr6.4:16627719-16627738 MS.gene42038:intron 55.0%
GGTGTGGGTGTGTGAATTGG+TGG - chr6.4:16627772-16627791 MS.gene42038:intron 55.0%
TCAGGAAGCAAATCTGGCGG+TGG + chr6.4:16628122-16628141 None:intergenic 55.0%
TCCAAGTCGAAGCAGCTGCT+CGG - chr6.4:16628834-16628853 MS.gene42038:CDS 55.0%
TGACCCCGTTGATCCAAAGG+AGG - chr6.4:16628799-16628818 MS.gene42038:CDS 55.0%
! GCAGCGGCTGATGATGATTG+TGG + chr6.4:16627046-16627065 None:intergenic 55.0%
!! GAGGAGTGTCCTTGCTTCGT+AGG - chr6.4:16627738-16627757 MS.gene42038:intron 55.0%
CACATGCAGCCTGTTGCCGA+AGG - chr6.4:16628701-16628720 MS.gene42038:CDS 60.0%
GCCTGTTGCCGAAGGTAGCT+TGG - chr6.4:16628709-16628728 MS.gene42038:CDS 60.0%
GGATCTACAGCAGAACCCGG+AGG + chr6.4:16628404-16628423 None:intergenic 60.0%
TCAGCGGCGATTGGAAGGCA+TGG - chr6.4:16628541-16628560 MS.gene42038:intron 60.0%
GCCGAGCAGCTGCTTCGACT+TGG + chr6.4:16628838-16628857 None:intergenic 65.0%
GCTGCCGACGGAAGCAGAGA+AGG - chr6.4:16627064-16627083 MS.gene42038:CDS 65.0%
GTCGAAGCAGCTGCTCGGCA+AGG - chr6.4:16628839-16628858 MS.gene42038:CDS 65.0%
TCATCAGCCGCTGCTGCCGA+CGG - chr6.4:16627052-16627071 MS.gene42038:CDS 65.0%
TCTGCTTCCGTCGGCAGCAG+CGG + chr6.4:16627062-16627081 None:intergenic 65.0%
! CGGTGTTAGACACCGACGCC+AGG - chr6.4:16627702-16627721 MS.gene42038:intron 65.0%


Chromosome Type Strat End Strand Name
chr6.4 gene 16627031 16628940 16627031 ID=MS.gene42038
chr6.4 mRNA 16627031 16628940 16627031 ID=MS.gene42038.t1;Parent=MS.gene42038
chr6.4 exon 16628698 16628940 16628698 ID=MS.gene42038.t1.exon1;Parent=MS.gene42038.t1
chr6.4 CDS 16628698 16628940 16628698 ID=cds.MS.gene42038.t1;Parent=MS.gene42038.t1
chr6.4 exon 16627031 16627687 16627031 ID=MS.gene42038.t1.exon2;Parent=MS.gene42038.t1
chr6.4 CDS 16627031 16627687 16627031 ID=cds.MS.gene42038.t1;Parent=MS.gene42038.t1
Gene Sequence

>MS.gene42038

ATGAATTCTGCACCACAATCATCATCAGCCGCTGCTGCCGACGGAAGCAGAGAAGGTATGGCACCGTTTCTTCAGAAGACGTATGACATGGTAGATGATCCCACCACAGATGAGATCGTTTCTTGGAGCTCTGATAACAAAAGCTTCATCGTTTGGAACCCTCCTGAATTCTCTCGCGTTCTTCTCCCAGCCTATTTCAAACACAGCAATTTCTCCAGCTTCATCCGTCAGCTCAATACCTATGTAAGTCAATTCACGCTATAAGCTTCTTTTGATTATTTCATTGTCACTTTGTATGATCAATTAGTTATTGTCTTTCACAGTGTTTTTGCTTGATTGTTTGTTGTATTTGTATGATTTGGTTTCATTGTGTCTTCATCGAATTTCAATTAGTGGATACTGATTATTATGATGATCATGATCATTAAGAGATTGATGAAAAAAATGATTAGTAAGATAAGAATTAGGTACAACTTTAGATTTGGATTATTTCATTGAGTTTAGTTGGAGATACAAAATGTTGAGACATGAGAATGTTGAAAGATGGATGAGATATTATAGTCTTGTATGGCACTTTTATTCTATAAAACATAAAACATAGACATCAGACACGACACAAACAACGAAACGCAGACAACGACAATGACATAATTCAGTATAATCATATGTGTCGGTGTTAGACACCGACGCCAGGACACACCTAATCTGAGGAGTGTCCTTGCTTCGTAGGTCTTAATTTTCGGTGTGGGTGTGTGAATTGGTGGGTGATTTAGGACTCTAAATGCACTCAAGAAAAACGATCAAAAAAATTTCTGCAGCATCTGGATCTTGGTAATGATGGTACATCGAATTATGAATAAAACCATCAATTTAGTCTCTGAATATCACACTATTTCCGGTTTAGTTCTTGAACTATATAAATATGATAAGTAGTTCCTGATTTTTATTGTTTAATCCTGCTTCTCTTCTGCATCGTAGACATCTCAAGCATCTAGGTTTTCATTTATTGAACTTGTTGAAATTGATATCTAAGTCTTAGATAGGGTTGAAAAATAGAAATCATGCACTTATGGATTAAAAACTAAGCCCCACCGCCAGATTTGCTTCCTGAAGTTTTTGTTTAATAAAGAATATTCTTGTAGAGATTTAATGGTAAATCGTTCAAAATAGGTCTTATGGATGTAATAATAAATAATTGTCTAAGAATGTATGTTTTAATTTGTTACGGTTTGTTTACGTGTGCTTTTTATCAGGGATTTCGAAAATCAGATCCTGATCGTTGGGAGTTTGCCAATGAAAAATTTATAAAAGATCAAAAACATCTTCTGACGGATATACACCGCAAGAAACCTATCCACAGTCATAGTCATCCTCCGGGTTCTGCTGTAGATCCAGAAAGGGCAGCATTGGAGAAAGAAATAGAGAAGCTGTCTCGCAAGAAAAATGCCCTTCAATCCAAACTCTTAAGCTATAATTATCTTGAGACAGAAAAGCTTCAGCTGGAAGATTTTCAGCGGCGATTGGAAGGCATGGAGAAGAGGCATACAAATTTGCAGAACTTCTTTGAGAAGGCTCTTCAGGATTCTTTCATTGTTGAACTTCTTTCCCGCAAAATCGAATCCATGGATTTGGAAACTTATAATAAGAAAAGGCGATTGTCTCAGGTTGATCACATGCAGCCTGTTGCCGAAGGTAGCTTGGTTGACCTTCCTAGCAATTTCTCTCAGAATCTTTCTGAAGGAGAACTGACAGGAATACAGACAAGAACTGACCCCGTTGATCCAAAGGAGGCTTCAGGTAACGTCCAAGTCGAAGCAGCTGCTCGGCAAGGAGTGAATGATGTGTTTTGGGAACAATTCCTTACCGAAAGTCCATGCTGTTCAGACAATGAAGAGGAAATGTTCAACTAA
Protein sequence

>MS.gene42038.t1

MNSAPQSSSAAAADGSREGMAPFLQKTYDMVDDPTTDEIVSWSSDNKSFIVWNPPEFSRVLLPAYFKHSNFSSFIRQLNTYGFRKSDPDRWEFANEKFIKDQKHLLTDIHRKKPIHSHSHPPGSAVDPERAALEKEIEKLSRKKNALQSKLLSYNYLETEKLQLEDFQRRLEGMEKRHTNLQNFFEKALQDSFIVELLSRKIESMDLETYNKKRRLSQVDHMQPVAEGSLVDLPSNFSQNLSEGELTGIQTRTDPVDPKEASGNVQVEAAARQGVNDVFWEQFLTESPCCSDNEEEMFN