Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42309.t1 | XP_013462164.1 | 96.9 | 448 | 9 | 2 | 1 | 448 | 1 | 443 | 1.90E-228 | 801.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42309.t1 | Q1PFD1 | 59.6 | 265 | 98 | 5 | 173 | 431 | 19 | 280 | 1.7e-81 | 304.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42309.t1 | A0A072V2D2 | 96.9 | 448 | 9 | 2 | 1 | 448 | 1 | 443 | 1.3e-228 | 801.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene42309.t1 | TF | HB-BELL |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42309.t1 | MTR_3g112290 | 96.875 | 448 | 9 | 3 | 1 | 448 | 1 | 443 | 0.0 | 887 |
| MS.gene42309.t1 | MTR_1g023050 | 50.903 | 277 | 105 | 8 | 173 | 432 | 173 | 435 | 8.70e-78 | 254 |
| MS.gene42309.t1 | MTR_3g112300 | 45.833 | 288 | 120 | 7 | 163 | 432 | 155 | 424 | 1.48e-70 | 232 |
| MS.gene42309.t1 | MTR_3g112300 | 45.085 | 295 | 126 | 7 | 163 | 439 | 155 | 431 | 4.95e-70 | 233 |
| MS.gene42309.t1 | MTR_4g051532 | 45.936 | 283 | 135 | 6 | 170 | 442 | 217 | 491 | 2.18e-66 | 226 |
| MS.gene42309.t1 | MTR_5g018860 | 43.000 | 300 | 150 | 9 | 136 | 427 | 312 | 598 | 5.58e-65 | 223 |
| MS.gene42309.t1 | MTR_7g106320 | 46.154 | 286 | 121 | 6 | 168 | 432 | 169 | 442 | 9.76e-65 | 220 |
| MS.gene42309.t1 | MTR_1g057790 | 45.418 | 251 | 129 | 4 | 169 | 414 | 160 | 407 | 2.71e-64 | 219 |
| MS.gene42309.t1 | MTR_8g078480 | 44.322 | 273 | 135 | 6 | 170 | 431 | 388 | 654 | 5.12e-63 | 218 |
| MS.gene42309.t1 | MTR_4g019450 | 41.697 | 271 | 127 | 5 | 167 | 431 | 193 | 438 | 2.61e-61 | 210 |
| MS.gene42309.t1 | MTR_7g065050 | 42.322 | 267 | 135 | 4 | 167 | 431 | 134 | 383 | 2.18e-59 | 202 |
| MS.gene42309.t1 | MTR_2g095050 | 40.461 | 304 | 138 | 8 | 159 | 432 | 230 | 520 | 1.96e-57 | 199 |
| MS.gene42309.t1 | MTR_8g098815 | 55.307 | 179 | 70 | 5 | 243 | 416 | 259 | 432 | 2.60e-57 | 199 |
| MS.gene42309.t1 | MTR_3g112300 | 42.188 | 256 | 112 | 7 | 163 | 400 | 155 | 392 | 2.20e-50 | 176 |
| MS.gene42309.t1 | MTR_1g016490 | 36.090 | 266 | 148 | 7 | 167 | 422 | 240 | 493 | 1.72e-39 | 149 |
| MS.gene42309.t1 | MTR_3g112300 | 39.149 | 235 | 107 | 7 | 163 | 379 | 155 | 371 | 9.43e-38 | 141 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42309.t1 | AT1G75430 | 60.377 | 265 | 96 | 6 | 173 | 431 | 19 | 280 | 7.69e-106 | 316 |
| MS.gene42309.t1 | AT1G75410 | 49.265 | 272 | 126 | 4 | 162 | 429 | 159 | 422 | 1.06e-77 | 251 |
| MS.gene42309.t1 | AT1G75410 | 49.265 | 272 | 126 | 4 | 162 | 429 | 159 | 422 | 1.06e-77 | 251 |
| MS.gene42309.t1 | AT1G19700 | 49.291 | 282 | 114 | 6 | 164 | 429 | 159 | 427 | 4.90e-77 | 249 |
| MS.gene42309.t1 | AT1G19700 | 49.291 | 282 | 114 | 6 | 164 | 429 | 159 | 427 | 4.90e-77 | 249 |
| MS.gene42309.t1 | AT1G19700 | 49.291 | 282 | 114 | 6 | 164 | 429 | 159 | 427 | 4.90e-77 | 249 |
| MS.gene42309.t1 | AT1G19700 | 49.291 | 282 | 114 | 6 | 164 | 429 | 159 | 427 | 4.90e-77 | 249 |
| MS.gene42309.t1 | AT1G19700 | 49.291 | 282 | 114 | 6 | 164 | 429 | 159 | 427 | 4.90e-77 | 249 |
| MS.gene42309.t1 | AT2G16400 | 47.059 | 289 | 129 | 7 | 148 | 433 | 98 | 365 | 9.78e-77 | 247 |
| MS.gene42309.t1 | AT4G34610 | 48.175 | 274 | 119 | 7 | 170 | 437 | 140 | 396 | 2.81e-70 | 232 |
| MS.gene42309.t1 | AT4G34610 | 48.175 | 274 | 119 | 7 | 170 | 437 | 140 | 396 | 2.81e-70 | 232 |
| MS.gene42309.t1 | AT4G34610 | 48.175 | 274 | 119 | 7 | 170 | 437 | 140 | 396 | 2.81e-70 | 232 |
| MS.gene42309.t1 | AT4G34610 | 48.175 | 274 | 119 | 7 | 170 | 437 | 140 | 396 | 2.81e-70 | 232 |
| MS.gene42309.t1 | AT1G75430 | 54.460 | 213 | 88 | 6 | 173 | 379 | 19 | 228 | 2.51e-67 | 217 |
| MS.gene42309.t1 | AT4G36870 | 46.269 | 268 | 117 | 10 | 170 | 422 | 312 | 567 | 2.12e-61 | 213 |
| MS.gene42309.t1 | AT4G36870 | 46.269 | 268 | 117 | 10 | 170 | 422 | 312 | 567 | 2.12e-61 | 213 |
| MS.gene42309.t1 | AT2G35940 | 41.577 | 279 | 129 | 6 | 163 | 414 | 175 | 446 | 7.68e-58 | 202 |
| MS.gene42309.t1 | AT2G35940 | 41.577 | 279 | 129 | 6 | 163 | 414 | 175 | 446 | 7.68e-58 | 202 |
| MS.gene42309.t1 | AT2G35940 | 41.577 | 279 | 129 | 6 | 163 | 414 | 175 | 446 | 7.68e-58 | 202 |
| MS.gene42309.t1 | AT2G23760 | 44.361 | 266 | 124 | 5 | 170 | 421 | 237 | 492 | 2.02e-57 | 200 |
| MS.gene42309.t1 | AT2G23760 | 44.361 | 266 | 124 | 5 | 170 | 421 | 237 | 492 | 2.02e-57 | 200 |
| MS.gene42309.t1 | AT2G23760 | 44.361 | 266 | 124 | 5 | 170 | 421 | 237 | 492 | 2.02e-57 | 200 |
| MS.gene42309.t1 | AT2G27220 | 42.972 | 249 | 109 | 4 | 176 | 423 | 82 | 298 | 3.75e-57 | 194 |
| MS.gene42309.t1 | AT2G27220 | 42.972 | 249 | 109 | 4 | 176 | 423 | 82 | 298 | 3.75e-57 | 194 |
| MS.gene42309.t1 | AT5G02030 | 37.377 | 305 | 174 | 3 | 125 | 423 | 125 | 418 | 7.66e-57 | 197 |
| MS.gene42309.t1 | AT1G75410 | 44.444 | 243 | 123 | 4 | 162 | 400 | 159 | 393 | 1.90e-55 | 189 |
| MS.gene42309.t1 | AT2G27220 | 42.205 | 263 | 109 | 8 | 176 | 423 | 82 | 316 | 7.00e-55 | 189 |
| MS.gene42309.t1 | AT2G27990 | 40.769 | 260 | 127 | 4 | 167 | 423 | 259 | 494 | 1.43e-53 | 189 |
| MS.gene42309.t1 | AT5G41410 | 40.702 | 285 | 141 | 5 | 171 | 433 | 194 | 472 | 1.70e-51 | 183 |
| MS.gene42309.t1 | AT2G23760 | 37.383 | 321 | 119 | 9 | 170 | 421 | 237 | 544 | 7.59e-48 | 174 |
| MS.gene42309.t1 | AT4G36870 | 42.915 | 247 | 114 | 10 | 170 | 401 | 312 | 546 | 2.64e-45 | 166 |
| MS.gene42309.t1 | AT4G36870 | 42.449 | 245 | 114 | 10 | 170 | 399 | 312 | 544 | 4.53e-44 | 162 |
| MS.gene42309.t1 | AT4G32980 | 36.299 | 281 | 147 | 6 | 152 | 422 | 183 | 441 | 9.97e-40 | 149 |
| MS.gene42309.t1 | AT4G32980 | 36.299 | 281 | 147 | 6 | 152 | 422 | 183 | 441 | 9.97e-40 | 149 |
| MS.gene42309.t1 | AT2G27990 | 34.259 | 216 | 115 | 4 | 167 | 379 | 259 | 450 | 9.88e-28 | 115 |
Find 79 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGGATTCATGGACATTTAT+TGG | 0.202908 | 3.2:-89561844 | MS.gene42309:CDS |
| GATCATAAGACCTTGATTTA+AGG | 0.203423 | 3.2:+89562238 | None:intergenic |
| CGTTCTACTTCTACTTCTTA+TGG | 0.209074 | 3.2:-89562053 | MS.gene42309:CDS |
| TGAGAAAAGAAAACTGTTTC+AGG | 0.210768 | 3.2:-89561013 | MS.gene42309:CDS |
| AGCATTTATTTGGGACATTA+TGG | 0.234641 | 3.2:+89561035 | None:intergenic |
| AGAATTGCTACAGATGTTTC+AGG | 0.303192 | 3.2:+89560853 | None:intergenic |
| CAAGGTCTATCCCTTTCTTT+AGG | 0.320317 | 3.2:-89562296 | MS.gene42309:CDS |
| ATACTACTTCTTCCATTTGA+TGG | 0.326054 | 3.2:+89561154 | None:intergenic |
| TTGTACATTTCTTCTATCAT+TGG | 0.327367 | 3.2:+89560386 | None:intergenic |
| CACCACCTAGTAGTAGTTCT+TGG | 0.332157 | 3.2:+89562477 | None:intergenic |
| TTCAAAACCAACGACAAGTT+TGG | 0.336930 | 3.2:-89560894 | MS.gene42309:CDS |
| GAAGTGACTGTACTGGTTTA+AGG | 0.338310 | 3.2:+89561991 | None:intergenic |
| TGCAAAGCTCATTTCATTGT+TGG | 0.340662 | 3.2:-89561793 | MS.gene42309:CDS |
| TTACACTGCTTTGGCACTTC+AGG | 0.345280 | 3.2:-89561091 | MS.gene42309:CDS |
| AGATGTCACTGTGGAGGATT+AGG | 0.348390 | 3.2:-89560300 | None:intergenic |
| AGCTGGCGGGTTGGAGTCTT+CGG | 0.349210 | 3.2:+89560343 | None:intergenic |
| ATTAACTTCTCAGAGTCATT+AGG | 0.369658 | 3.2:+89560697 | None:intergenic |
| GAAATGTACAAAGAAGAGTT+TGG | 0.376842 | 3.2:-89560374 | MS.gene42309:CDS |
| GTTTCAGGTAACCCTCTAAT+AGG | 0.383713 | 3.2:+89560868 | None:intergenic |
| CTTGAAGATCTTGTTGATGT+TGG | 0.386052 | 3.2:-89561969 | MS.gene42309:CDS |
| TTAATCCTGGCTTCCCAAAC+AGG | 0.402326 | 3.2:-89560679 | MS.gene42309:CDS |
| GAGTCACACAAGACATTTGA+TGG | 0.404453 | 3.2:-89562360 | MS.gene42309:CDS |
| TGTTGGTTCAGGTGTCAAAT+TGG | 0.407480 | 3.2:-89560439 | MS.gene42309:intron |
| TTTGAAATGATAGCAGGTTT+GGG | 0.408450 | 3.2:-89561126 | MS.gene42309:CDS |
| TGCAAAGTGTTACACTGCTT+TGG | 0.409703 | 3.2:-89561100 | MS.gene42309:CDS |
| AAAGCAGAGTTGAGGATTCA+TGG | 0.417721 | 3.2:-89561855 | MS.gene42309:CDS |
| TCTTATGGAAGTGAGAGTTT+TGG | 0.428359 | 3.2:-89562038 | MS.gene42309:CDS |
| TTGTTTCATGGGAGTAGAAC+AGG | 0.428923 | 3.2:-89561903 | MS.gene42309:CDS |
| CTGTAGCAATTCTTCGTGCT+TGG | 0.430609 | 3.2:-89560843 | MS.gene42309:CDS |
| TTCAATGGTGGAAATGGAGG+TGG | 0.430738 | 3.2:-89562128 | MS.gene42309:CDS |
| TATGCTGAGAAGTTGTTTCA+TGG | 0.434153 | 3.2:-89561915 | MS.gene42309:CDS |
| GAATCCTCAACTCTGCTTTG+AGG | 0.436275 | 3.2:+89561859 | None:intergenic |
| TGACCAGGCATGAAGTAACT+TGG | 0.451078 | 3.2:+89562212 | None:intergenic |
| CAAGTTTGGAGACCTATTAG+AGG | 0.455849 | 3.2:-89560880 | MS.gene42309:CDS |
| GGGATAGACCTTGTTGTGTC+TGG | 0.465614 | 3.2:+89562306 | None:intergenic |
| TTAAACCTGTTTGGGAAGCC+AGG | 0.480873 | 3.2:+89560674 | None:intergenic |
| CTTGACATAAAATTGTTAGC+TGG | 0.489551 | 3.2:+89560326 | None:intergenic |
| TGACTCTGAGAAGTTAATCC+TGG | 0.499019 | 3.2:-89560692 | MS.gene42309:CDS |
| TTTGAATGACACCAAGTTGT+TGG | 0.503416 | 3.2:+89560911 | None:intergenic |
| GCTCATTTCATTGTTGGATG+AGG | 0.504055 | 3.2:-89561787 | MS.gene42309:intron |
| CTTGTTAGATTCTCCACCAC+AGG | 0.504734 | 3.2:+89562161 | None:intergenic |
| TGAGAAGTACTACCATCAAA+TGG | 0.506912 | 3.2:-89561166 | MS.gene42309:CDS |
| TCCACCACAGGTTGATTACA+AGG | 0.508130 | 3.2:+89562173 | None:intergenic |
| GAAGATCTTGTTGATGTTGG+TGG | 0.515827 | 3.2:-89561966 | MS.gene42309:CDS |
| AACCCAAGTTACTTCATGCC+TGG | 0.516099 | 3.2:-89562215 | MS.gene42309:CDS |
| TTAATGCAAGGGTACGGCTA+TGG | 0.523142 | 3.2:-89560412 | MS.gene42309:CDS |
| CAAATTGGTTCATTAATGCA+AGG | 0.528439 | 3.2:-89560424 | MS.gene42309:CDS |
| CATGTGAGAGCCTAAAGAAA+GGG | 0.530908 | 3.2:+89562286 | None:intergenic |
| ATGCTGAGAAGTTGTTTCAT+GGG | 0.532525 | 3.2:-89561914 | MS.gene42309:CDS |
| TGGCACTTCAGGCAATGTCT+AGG | 0.533896 | 3.2:-89561080 | MS.gene42309:CDS |
| TCTTCAAGAAGTGACTGTAC+TGG | 0.534996 | 3.2:+89561984 | None:intergenic |
| ACATAAAATTGTTAGCTGGC+GGG | 0.535342 | 3.2:+89560330 | None:intergenic |
| AGAAACCGTTCCTTAAATCA+AGG | 0.535526 | 3.2:-89562248 | MS.gene42309:CDS |
| TAGGTCTCCAAACTTGTCGT+TGG | 0.537318 | 3.2:+89560887 | None:intergenic |
| GATGTACCTAAAATTAATAG+TGG | 0.538946 | 3.2:-89560991 | MS.gene42309:CDS |
| GCATGTGAGAGCCTAAAGAA+AGG | 0.546878 | 3.2:+89562285 | None:intergenic |
| TAAGACCTTGATTTAAGGAA+CGG | 0.549373 | 3.2:+89562243 | None:intergenic |
| AGACATTTGATGGATCTACT+TGG | 0.551807 | 3.2:-89562350 | MS.gene42309:CDS |
| AAAATTGTTAGCTGGCGGGT+TGG | 0.557706 | 3.2:+89560334 | None:intergenic |
| AGAATGTCTCTCCAACAACT+TGG | 0.557966 | 3.2:-89560922 | MS.gene42309:CDS |
| GACCAGGCATGAAGTAACTT+GGG | 0.566873 | 3.2:+89562213 | None:intergenic |
| GAGAACCAAGAACTACTACT+AGG | 0.567546 | 3.2:-89562482 | MS.gene42309:CDS |
| GGTTCATTAATGCAAGGGTA+CGG | 0.572871 | 3.2:-89560418 | MS.gene42309:CDS |
| AAATTGGTTCATTAATGCAA+GGG | 0.576729 | 3.2:-89560423 | MS.gene42309:CDS |
| GACATAAAATTGTTAGCTGG+CGG | 0.577181 | 3.2:+89560329 | None:intergenic |
| AAGTTTGGAGACCTATTAGA+GGG | 0.581283 | 3.2:-89560879 | MS.gene42309:CDS |
| TCACGTGTCTGATCTTGACC+AGG | 0.591778 | 3.2:+89562197 | None:intergenic |
| CAACTCTGCTTTGAGGTCAG+AGG | 0.594657 | 3.2:+89561866 | None:intergenic |
| CATAAGAAGTAGAAGTAGAA+CGG | 0.599560 | 3.2:+89562054 | None:intergenic |
| AATGCATATCATGAATCACT+TGG | 0.609154 | 3.2:-89562425 | MS.gene42309:CDS |
| AACAATATTGGACTAGCACA+AGG | 0.612707 | 3.2:-89562392 | MS.gene42309:CDS |
| GCCTTGTAATCAACCTGTGG+TGG | 0.623528 | 3.2:-89562174 | MS.gene42309:CDS |
| AATAATCACCAGACACAACA+AGG | 0.630483 | 3.2:-89562314 | MS.gene42309:CDS |
| AAGGGAAGATGTCACTGTGG+AGG | 0.641601 | 3.2:-89560306 | MS.gene42309:CDS |
| CAAGAACTACTACTAGGTGG+TGG | 0.646214 | 3.2:-89562476 | MS.gene42309:CDS |
| CTGACCTCAAAGCAGAGTTG+AGG | 0.668038 | 3.2:-89561863 | MS.gene42309:CDS |
| AACCAAGAACTACTACTAGG+TGG | 0.711092 | 3.2:-89562479 | MS.gene42309:CDS |
| TGAGCCTTGTAATCAACCTG+TGG | 0.732645 | 3.2:-89562177 | MS.gene42309:CDS |
| GTCAAGGGAAGATGTCACTG+TGG | 0.757361 | 3.2:-89560309 | MS.gene42309:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGAAAATGTGAAAAAAAT+TGG | + | chr3.2:89562202-89562221 | None:intergenic | 15.0% |
| !!! | AAACAAAAATCAAATTGTTT+TGG | - | chr3.2:89561190-89561209 | MS.gene42309:intron | 15.0% |
| !!! | TTTTTCACATTTTCTTTTAT+GGG | - | chr3.2:89562205-89562224 | MS.gene42309:CDS | 15.0% |
| !!! | TTTTTTCACATTTTCTTTTA+TGG | - | chr3.2:89562204-89562223 | MS.gene42309:CDS | 15.0% |
| !!! | TTTTTTGAAGTTATTTATGA+TGG | - | chr3.2:89562339-89562358 | MS.gene42309:CDS | 15.0% |
| !! | AAAAAGAAAAACAAATTGAG+AGG | - | chr3.2:89561391-89561410 | MS.gene42309:intron | 20.0% |
| !! | ATATAAGTGTTAGATATACT+TGG | + | chr3.2:89561555-89561574 | None:intergenic | 20.0% |
| !! | ATTAATGAAATGCTAATTTG+AGG | - | chr3.2:89562081-89562100 | MS.gene42309:CDS | 20.0% |
| !! | TATAAGTGTTAGATATACTT+GGG | + | chr3.2:89561554-89561573 | None:intergenic | 20.0% |
| !!! | ACAAGTGATTATTTTTTCAA+TGG | - | chr3.2:89560676-89560695 | MS.gene42309:CDS | 20.0% |
| !!! | AGAATTTTGATATAAGCTTA+CGG | + | chr3.2:89562023-89562042 | None:intergenic | 20.0% |
| ! | AAGCTATCTTAGAGAATTTA+TGG | - | chr3.2:89561246-89561265 | MS.gene42309:intron | 25.0% |
| ! | AAGTTCATTAGAATAAGTGT+AGG | - | chr3.2:89561435-89561454 | MS.gene42309:intron | 25.0% |
| ! | AGCTATCTTAGAGAATTTAT+GGG | - | chr3.2:89561247-89561266 | MS.gene42309:intron | 25.0% |
| ! | GATGTACCTAAAATTAATAG+TGG | - | chr3.2:89561828-89561847 | MS.gene42309:CDS | 25.0% |
| ! | TAGCATTTCATTAATAAGAC+AGG | + | chr3.2:89562076-89562095 | None:intergenic | 25.0% |
| ! | TATGTTAATGTATTGAGTGT+TGG | - | chr3.2:89562363-89562382 | MS.gene42309:CDS | 25.0% |
| ! | TTGTACATTTCTTCTATCAT+TGG | + | chr3.2:89562436-89562455 | None:intergenic | 25.0% |
| !! | AAAGTTGGTTAGTAATTAGT+TGG | + | chr3.2:89561511-89561530 | None:intergenic | 25.0% |
| !! | AAATTGGTTCATTAATGCAA+GGG | - | chr3.2:89562396-89562415 | MS.gene42309:CDS | 25.0% |
| !! | AAGTTGGTTAGTAATTAGTT+GGG | + | chr3.2:89561510-89561529 | None:intergenic | 25.0% |
| !! | AGCTAACAATTTTATGTCAA+GGG | - | chr3.2:89562495-89562514 | MS.gene42309:CDS | 25.0% |
| !! | GACAATCCACTATTAATTTT+AGG | + | chr3.2:89561837-89561856 | None:intergenic | 25.0% |
| !! | GGAACATTTTCTAACAATAT+TGG | - | chr3.2:89560415-89560434 | MS.gene42309:CDS | 25.0% |
| !! | TCTTTTCTCAGCATTTATTT+GGG | + | chr3.2:89561796-89561815 | None:intergenic | 25.0% |
| !! | TTCTTTTCTCAGCATTTATT+TGG | + | chr3.2:89561797-89561816 | None:intergenic | 25.0% |
| !!! | AGTGATTATTTTTTCAATGG+TGG | - | chr3.2:89560679-89560698 | MS.gene42309:CDS | 25.0% |
| !!! | ATTTGTTGTGCTTAATTTTC+AGG | - | chr3.2:89561617-89561636 | MS.gene42309:intron | 25.0% |
| !!! | GTTCTCAAATTGATTTTGAT+GGG | + | chr3.2:89560323-89560342 | None:intergenic | 25.0% |
| !!! | TATTTTTTCAATGGTGGAAA+TGG | - | chr3.2:89560685-89560704 | MS.gene42309:CDS | 25.0% |
| AATAATAAGCACTTGTGAGA+CGG | + | chr3.2:89561349-89561368 | None:intergenic | 30.0% | |
| AATGCATATCATGAATCACT+TGG | - | chr3.2:89560394-89560413 | MS.gene42309:CDS | 30.0% | |
| ATACTACTTCTTCCATTTGA+TGG | + | chr3.2:89561668-89561687 | None:intergenic | 30.0% | |
| ATTAACTTCTCAGAGTCATT+AGG | + | chr3.2:89562125-89562144 | None:intergenic | 30.0% | |
| CATAAGAAGTAGAAGTAGAA+CGG | + | chr3.2:89560768-89560787 | None:intergenic | 30.0% | |
| CTTGACATAAAATTGTTAGC+TGG | + | chr3.2:89562496-89562515 | None:intergenic | 30.0% | |
| GAAATGTACAAAGAAGAGTT+TGG | - | chr3.2:89562445-89562464 | MS.gene42309:CDS | 30.0% | |
| GATCATAAGACCTTGATTTA+AGG | + | chr3.2:89560584-89560603 | None:intergenic | 30.0% | |
| GTGCTTATTATTGAGAAACA+TGG | - | chr3.2:89561357-89561376 | MS.gene42309:intron | 30.0% | |
| TAAGACCTTGATTTAAGGAA+CGG | + | chr3.2:89560579-89560598 | None:intergenic | 30.0% | |
| TGAGAAAAGAAAACTGTTTC+AGG | - | chr3.2:89561806-89561825 | MS.gene42309:CDS | 30.0% | |
| TTATGGGTAGAAATTGAGTT+AGG | - | chr3.2:89562221-89562240 | MS.gene42309:CDS | 30.0% | |
| ! | AGCATTTATTTGGGACATTA+TGG | + | chr3.2:89561787-89561806 | None:intergenic | 30.0% |
| ! | CAAATTGGTTCATTAATGCA+AGG | - | chr3.2:89562395-89562414 | MS.gene42309:CDS | 30.0% |
| ! | CAGCTAACAATTTTATGTCA+AGG | - | chr3.2:89562494-89562513 | MS.gene42309:CDS | 30.0% |
| ! | GGGAAAATGTCAAATAGTTT+TGG | - | chr3.2:89561267-89561286 | MS.gene42309:intron | 30.0% |
| ! | TTTGAAATGATAGCAGGTTT+GGG | - | chr3.2:89561693-89561712 | MS.gene42309:intron | 30.0% |
| !! | AAATTGATTTTGATGGGTCA+TGG | + | chr3.2:89560317-89560336 | None:intergenic | 30.0% |
| !! | GGTTCTCAAATTGATTTTGA+TGG | + | chr3.2:89560324-89560343 | None:intergenic | 30.0% |
| !! | GTTAAAGGTACTTACAAAGT+TGG | + | chr3.2:89561526-89561545 | None:intergenic | 30.0% |
| !! | TATACTTGGGAGTTTGTTAA+AGG | + | chr3.2:89561541-89561560 | None:intergenic | 30.0% |
| !!! | AGAGTTTTGGTTCTGTTATT+GGG | - | chr3.2:89560794-89560813 | MS.gene42309:intron | 30.0% |
| !!! | GTTTTTGGTTAAACCTGTTT+GGG | + | chr3.2:89562156-89562175 | None:intergenic | 30.0% |
| !!! | TCATCTTTTGAAATGATAGC+AGG | - | chr3.2:89561687-89561706 | MS.gene42309:intron | 30.0% |
| !!! | TTTTGAAATGATAGCAGGTT+TGG | - | chr3.2:89561692-89561711 | MS.gene42309:intron | 30.0% |
| AAGTTTGGAGACCTATTAGA+GGG | - | chr3.2:89561940-89561959 | MS.gene42309:CDS | 35.0% | |
| AATAATCACCAGACACAACA+AGG | - | chr3.2:89560505-89560524 | MS.gene42309:intron | 35.0% | |
| ACATAAAATTGTTAGCTGGC+GGG | + | chr3.2:89562492-89562511 | None:intergenic | 35.0% | |
| AGAAACCGTTCCTTAAATCA+AGG | - | chr3.2:89560571-89560590 | MS.gene42309:intron | 35.0% | |
| AGAATTGCTACAGATGTTTC+AGG | + | chr3.2:89561969-89561988 | None:intergenic | 35.0% | |
| ATTTCATTGTTGGATGAGGT+TGG | - | chr3.2:89561036-89561055 | MS.gene42309:CDS | 35.0% | |
| CACTTTAGTCTCTACTTACT+TGG | + | chr3.2:89562178-89562197 | None:intergenic | 35.0% | |
| CGTTCTACTTCTACTTCTTA+TGG | - | chr3.2:89560766-89560785 | MS.gene42309:intron | 35.0% | |
| CTTGAAGATCTTGTTGATGT+TGG | - | chr3.2:89560850-89560869 | MS.gene42309:CDS | 35.0% | |
| GACATAAAATTGTTAGCTGG+CGG | + | chr3.2:89562493-89562512 | None:intergenic | 35.0% | |
| GAGGATTCATGGACATTTAT+TGG | - | chr3.2:89560975-89560994 | MS.gene42309:CDS | 35.0% | |
| GTTAGTAATTAGTTGGGAGT+TGG | + | chr3.2:89561504-89561523 | None:intergenic | 35.0% | |
| TGCAAAGCTCATTTCATTGT+TGG | - | chr3.2:89561026-89561045 | MS.gene42309:CDS | 35.0% | |
| TTCAAAACCAACGACAAGTT+TGG | - | chr3.2:89561925-89561944 | MS.gene42309:CDS | 35.0% | |
| TTTGAATGACACCAAGTTGT+TGG | + | chr3.2:89561911-89561930 | None:intergenic | 35.0% | |
| ! | AGACATTTGATGGATCTACT+TGG | - | chr3.2:89560469-89560488 | MS.gene42309:intron | 35.0% |
| ! | ATGCTGAGAAGTTGTTTCAT+GGG | - | chr3.2:89560905-89560924 | MS.gene42309:CDS | 35.0% |
| ! | TATGCTGAGAAGTTGTTTCA+TGG | - | chr3.2:89560904-89560923 | MS.gene42309:CDS | 35.0% |
| ! | TCTTATGGAAGTGAGAGTTT+TGG | - | chr3.2:89560781-89560800 | MS.gene42309:intron | 35.0% |
| !! | AACAATATTGGACTAGCACA+AGG | - | chr3.2:89560427-89560446 | MS.gene42309:CDS | 35.0% |
| !! | AATGTATTGAGTGTTGGTTC+AGG | - | chr3.2:89562369-89562388 | MS.gene42309:CDS | 35.0% |
| !! | GTCTCTACTTACTTGGTTTT+TGG | + | chr3.2:89562171-89562190 | None:intergenic | 35.0% |
| !! | TGAGAAGTACTACCATCAAA+TGG | - | chr3.2:89561653-89561672 | MS.gene42309:intron | 35.0% |
| !! | TTTTTCAATGGTGGAAATGG+AGG | - | chr3.2:89560688-89560707 | MS.gene42309:CDS | 35.0% |
| !!! | GAGAGTTTTGGTTCTGTTAT+TGG | - | chr3.2:89560793-89560812 | MS.gene42309:intron | 35.0% |
| !!! | GGTTTTTGGTTAAACCTGTT+TGG | + | chr3.2:89562157-89562176 | None:intergenic | 35.0% |
| !!! | GTGCTTAATTTTCAGGTTGA+GGG | - | chr3.2:89561624-89561643 | MS.gene42309:intron | 35.0% |
| !!! | TGTGCTTAATTTTCAGGTTG+AGG | - | chr3.2:89561623-89561642 | MS.gene42309:intron | 35.0% |
| AAAGCAGAGTTGAGGATTCA+TGG | - | chr3.2:89560964-89560983 | MS.gene42309:CDS | 40.0% | |
| AACCAAGAACTACTACTAGG+TGG | - | chr3.2:89560340-89560359 | MS.gene42309:CDS | 40.0% | |
| AGAATGTCTCTCCAACAACT+TGG | - | chr3.2:89561897-89561916 | MS.gene42309:CDS | 40.0% | |
| CAAGGTCTATCCCTTTCTTT+AGG | - | chr3.2:89560523-89560542 | MS.gene42309:intron | 40.0% | |
| CAAGTTTGGAGACCTATTAG+AGG | - | chr3.2:89561939-89561958 | MS.gene42309:CDS | 40.0% | |
| CATGTGAGAGCCTAAAGAAA+GGG | + | chr3.2:89560536-89560555 | None:intergenic | 40.0% | |
| GAAGATCTTGTTGATGTTGG+TGG | - | chr3.2:89560853-89560872 | MS.gene42309:CDS | 40.0% | |
| GAGAACCAAGAACTACTACT+AGG | - | chr3.2:89560337-89560356 | MS.gene42309:CDS | 40.0% | |
| GAGTCACACAAGACATTTGA+TGG | - | chr3.2:89560459-89560478 | MS.gene42309:intron | 40.0% | |
| GCTCATTTCATTGTTGGATG+AGG | - | chr3.2:89561032-89561051 | MS.gene42309:CDS | 40.0% | |
| GGTTCATTAATGCAAGGGTA+CGG | - | chr3.2:89562401-89562420 | MS.gene42309:CDS | 40.0% | |
| TCTTCAAGAAGTGACTGTAC+TGG | + | chr3.2:89560838-89560857 | None:intergenic | 40.0% | |
| TTGTTTCATGGGAGTAGAAC+AGG | - | chr3.2:89560916-89560935 | MS.gene42309:CDS | 40.0% | |
| ! | GTTTCAGGTAACCCTCTAAT+AGG | + | chr3.2:89561954-89561973 | None:intergenic | 40.0% |
| ! | TGACTCTGAGAAGTTAATCC+TGG | - | chr3.2:89562127-89562146 | MS.gene42309:CDS | 40.0% |
| ! | TGCAAAGTGTTACACTGCTT+TGG | - | chr3.2:89561719-89561738 | MS.gene42309:intron | 40.0% |
| !! | GAAGTGACTGTACTGGTTTA+AGG | + | chr3.2:89560831-89560850 | None:intergenic | 40.0% |
| !! | TGTTGGTTCAGGTGTCAAAT+TGG | - | chr3.2:89562380-89562399 | MS.gene42309:CDS | 40.0% |
| AACCCAAGTTACTTCATGCC+TGG | - | chr3.2:89560604-89560623 | MS.gene42309:intron | 45.0% | |
| CAAGAACTACTACTAGGTGG+TGG | - | chr3.2:89560343-89560362 | MS.gene42309:CDS | 45.0% | |
| CACCACCTAGTAGTAGTTCT+TGG | + | chr3.2:89560345-89560364 | None:intergenic | 45.0% | |
| CTGTAGCAATTCTTCGTGCT+TGG | - | chr3.2:89561976-89561995 | MS.gene42309:CDS | 45.0% | |
| CTTGTTAGATTCTCCACCAC+AGG | + | chr3.2:89560661-89560680 | None:intergenic | 45.0% | |
| GAATCCTCAACTCTGCTTTG+AGG | + | chr3.2:89560963-89560982 | None:intergenic | 45.0% | |
| GACCAGGCATGAAGTAACTT+GGG | + | chr3.2:89560609-89560628 | None:intergenic | 45.0% | |
| GCATGTGAGAGCCTAAAGAA+AGG | + | chr3.2:89560537-89560556 | None:intergenic | 45.0% | |
| TAGGTCTCCAAACTTGTCGT+TGG | + | chr3.2:89561935-89561954 | None:intergenic | 45.0% | |
| TGACCAGGCATGAAGTAACT+TGG | + | chr3.2:89560610-89560629 | None:intergenic | 45.0% | |
| TTAAACCTGTTTGGGAAGCC+AGG | + | chr3.2:89562148-89562167 | None:intergenic | 45.0% | |
| TTAATCCTGGCTTCCCAAAC+AGG | - | chr3.2:89562140-89562159 | MS.gene42309:CDS | 45.0% | |
| TTACACTGCTTTGGCACTTC+AGG | - | chr3.2:89561728-89561747 | MS.gene42309:intron | 45.0% | |
| ! | AAAATTGTTAGCTGGCGGGT+TGG | + | chr3.2:89562488-89562507 | None:intergenic | 45.0% |
| ! | AAGCACTTGTGAGACGGATT+AGG | + | chr3.2:89561343-89561362 | None:intergenic | 45.0% |
| ! | TGAGCCTTGTAATCAACCTG+TGG | - | chr3.2:89560642-89560661 | MS.gene42309:intron | 45.0% |
| ! | TTAATGCAAGGGTACGGCTA+TGG | - | chr3.2:89562407-89562426 | MS.gene42309:CDS | 45.0% |
| ! | TTCAATGGTGGAAATGGAGG+TGG | - | chr3.2:89560691-89560710 | MS.gene42309:CDS | 45.0% |
| !! | TCCACCACAGGTTGATTACA+AGG | + | chr3.2:89560649-89560668 | None:intergenic | 45.0% |
| !! | TGCGCATTGATTGATGTCGA+TGG | - | chr3.2:89562273-89562292 | MS.gene42309:CDS | 45.0% |
| AAGGGAAGATGTCACTGTGG+AGG | - | chr3.2:89562513-89562532 | MS.gene42309:CDS | 50.0% | |
| CTGACCTCAAAGCAGAGTTG+AGG | - | chr3.2:89560956-89560975 | MS.gene42309:CDS | 50.0% | |
| GCCTTGTAATCAACCTGTGG+TGG | - | chr3.2:89560645-89560664 | MS.gene42309:intron | 50.0% | |
| GTCAAGGGAAGATGTCACTG+TGG | - | chr3.2:89562510-89562529 | MS.gene42309:CDS | 50.0% | |
| TCACGTGTCTGATCTTGACC+AGG | + | chr3.2:89560625-89560644 | None:intergenic | 50.0% | |
| TGGCACTTCAGGCAATGTCT+AGG | - | chr3.2:89561739-89561758 | MS.gene42309:intron | 50.0% | |
| ! | GGAGGTGGAACTTTTGCTTC+AGG | - | chr3.2:89560706-89560725 | MS.gene42309:intron | 50.0% |
| ! | GGGATAGACCTTGTTGTGTC+TGG | + | chr3.2:89560516-89560535 | None:intergenic | 50.0% |
| !! | CAACTCTGCTTTGAGGTCAG+AGG | + | chr3.2:89560956-89560975 | None:intergenic | 50.0% |
| !! | AGCTGGCGGGTTGGAGTCTT+CGG | + | chr3.2:89562479-89562498 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 89560301 | 89562540 | 89560301 | ID=MS.gene42309 |
| chr3.2 | mRNA | 89560301 | 89562540 | 89560301 | ID=MS.gene42309.t1;Parent=MS.gene42309 |
| chr3.2 | exon | 89561788 | 89562540 | 89561788 | ID=MS.gene42309.t1.exon1;Parent=MS.gene42309.t1 |
| chr3.2 | CDS | 89561788 | 89562540 | 89561788 | ID=cds.MS.gene42309.t1;Parent=MS.gene42309.t1 |
| chr3.2 | exon | 89560820 | 89561202 | 89560820 | ID=MS.gene42309.t1.exon2;Parent=MS.gene42309.t1 |
| chr3.2 | CDS | 89560820 | 89561202 | 89560820 | ID=cds.MS.gene42309.t1;Parent=MS.gene42309.t1 |
| chr3.2 | exon | 89560663 | 89560723 | 89560663 | ID=MS.gene42309.t1.exon3;Parent=MS.gene42309.t1 |
| chr3.2 | CDS | 89560663 | 89560723 | 89560663 | ID=cds.MS.gene42309.t1;Parent=MS.gene42309.t1 |
| chr3.2 | exon | 89560301 | 89560450 | 89560301 | ID=MS.gene42309.t1.exon4;Parent=MS.gene42309.t1 |
| chr3.2 | CDS | 89560301 | 89560450 | 89560301 | ID=cds.MS.gene42309.t1;Parent=MS.gene42309.t1 |
| Gene Sequence |
| Protein sequence |
