Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42354.t1 | XP_013462104.1 | 93.6 | 235 | 15 | 0 | 18 | 252 | 81 | 315 | 1.70E-106 | 395.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42354.t1 | Q9LN63 | 58.5 | 246 | 80 | 8 | 25 | 252 | 94 | 335 | 6.6e-46 | 185.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42354.t1 | B7FHU2 | 93.6 | 235 | 15 | 0 | 18 | 252 | 81 | 315 | 1.3e-106 | 395.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene42354.t1 | TF | BES1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42354.t1 | MTR_3g111680 | 98.298 | 235 | 4 | 0 | 18 | 252 | 81 | 315 | 4.84e-169 | 469 |
| MS.gene42354.t1 | MTR_5g019550 | 49.754 | 203 | 78 | 8 | 68 | 250 | 41 | 239 | 5.77e-47 | 156 |
| MS.gene42354.t1 | MTR_5g019550 | 49.754 | 203 | 78 | 8 | 68 | 250 | 125 | 323 | 5.98e-46 | 156 |
| MS.gene42354.t1 | MTR_1g021990 | 40.758 | 211 | 65 | 5 | 40 | 250 | 97 | 247 | 7.62e-35 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42354.t1 | AT1G75080 | 59.426 | 244 | 77 | 9 | 25 | 250 | 95 | 334 | 5.52e-70 | 218 |
| MS.gene42354.t1 | AT1G75080 | 59.426 | 244 | 77 | 9 | 25 | 250 | 95 | 334 | 5.52e-70 | 218 |
| MS.gene42354.t1 | AT1G19350 | 56.299 | 254 | 89 | 8 | 17 | 252 | 86 | 335 | 1.70e-68 | 214 |
| MS.gene42354.t1 | AT1G19350 | 56.299 | 254 | 89 | 8 | 17 | 252 | 86 | 335 | 1.70e-68 | 214 |
| MS.gene42354.t1 | AT1G19350 | 56.299 | 254 | 89 | 8 | 17 | 252 | 86 | 335 | 1.70e-68 | 214 |
| MS.gene42354.t1 | AT1G19350 | 56.299 | 254 | 89 | 8 | 17 | 252 | 86 | 335 | 1.70e-68 | 214 |
| MS.gene42354.t1 | AT1G19350 | 58.130 | 246 | 81 | 8 | 25 | 252 | 116 | 357 | 1.92e-68 | 215 |
| MS.gene42354.t1 | AT3G50750 | 47.642 | 212 | 79 | 5 | 37 | 247 | 90 | 270 | 7.29e-35 | 126 |
| MS.gene42354.t1 | AT4G36780 | 51.000 | 100 | 47 | 1 | 49 | 146 | 112 | 211 | 3.40e-12 | 65.1 |
Find 90 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCTGCTTTGTCCAATTTA+AGG | 0.128492 | 3.2:+89185388 | MS.gene42354:CDS |
| TGCAGGTCAAGCCTTGGGTT+GGG | 0.244939 | 3.2:+89186489 | MS.gene42354:CDS |
| TTATGCTGCTCATTAATTAC+AGG | 0.267539 | 3.2:-89186410 | None:intergenic |
| CATAGTCACCTACCTTAAAT+TGG | 0.297762 | 3.2:-89185400 | None:intergenic |
| TGAAGTGGGCTTGGATGATT+TGG | 0.316017 | 3.2:+89186523 | MS.gene42354:CDS |
| AGGATTTCAGAGCCAGAGTT+TGG | 0.317045 | 3.2:+89186464 | MS.gene42354:CDS |
| CCATGTTGGAATCATGGGTT+TGG | 0.326849 | 3.2:-89186171 | None:intergenic |
| CATGTTGGAATCATGGGTTT+GGG | 0.346172 | 3.2:-89186170 | None:intergenic |
| GAATCAATTGCCAAAGCATC+AGG | 0.379878 | 3.2:+89186194 | MS.gene42354:CDS |
| GTGCAGGTCAAGCCTTGGGT+TGG | 0.384192 | 3.2:+89186488 | MS.gene42354:CDS |
| GGATTTCAGAGCCAGAGTTT+GGG | 0.385062 | 3.2:+89186465 | MS.gene42354:CDS |
| TTGGAGCTTACTCTTGGAAA+TGG | 0.386518 | 3.2:+89186542 | MS.gene42354:CDS |
| TGGGGTGCAGGTCAAGCCTT+GGG | 0.386786 | 3.2:+89186484 | MS.gene42354:CDS |
| TGATTCCCATGTTGGAATCA+TGG | 0.387349 | 3.2:-89186177 | None:intergenic |
| TTGGGGTGCAGGTCAAGCCT+TGG | 0.395856 | 3.2:+89186483 | MS.gene42354:CDS |
| AGAGCCAGAGTTTGGGGTGC+AGG | 0.400385 | 3.2:+89186472 | MS.gene42354:CDS |
| GAATAGTAGGTGGTGTATAA+AGG | 0.410535 | 3.2:-89186277 | None:intergenic |
| GATGATTTGGAGCTTACTCT+TGG | 0.411343 | 3.2:+89186536 | MS.gene42354:CDS |
| GGCGCAGAAGCTGCGAAGAA+AGG | 0.412024 | 3.2:-89186233 | None:intergenic |
| GTATCAGACTCATCACATTC+AGG | 0.421362 | 3.2:-89186299 | None:intergenic |
| CTTGAAGTTGGTGATGAGAT+AGG | 0.423563 | 3.2:-89186143 | None:intergenic |
| GGGAACATGCTGCGAGCATA+TGG | 0.428278 | 3.2:-89186068 | None:intergenic |
| AAGGATTCATGAAGTGGGCT+TGG | 0.442178 | 3.2:+89186514 | MS.gene42354:CDS |
| GCAGGTCAAGCCTTGGGTTG+GGG | 0.445549 | 3.2:+89186490 | MS.gene42354:CDS |
| GAAACACCAGGCGACGGTGC+AGG | 0.453828 | 3.2:+89185888 | MS.gene42354:CDS |
| GAAGGATGTCCCTGATGCTT+TGG | 0.455024 | 3.2:-89186204 | None:intergenic |
| TAGGTGGTGTATAAAGGTTC+CGG | 0.456174 | 3.2:-89186271 | None:intergenic |
| TCATCACATTCAGGAATAGT+AGG | 0.457941 | 3.2:-89186290 | None:intergenic |
| ATTTCCGAGCCCGTCTCGTA+TGG | 0.458323 | 3.2:+89186016 | MS.gene42354:CDS |
| AAGAGGAAGATGGGCTAACT+TGG | 0.459342 | 3.2:-89185992 | None:intergenic |
| AAATTTCCTGCACCGTCGCC+TGG | 0.461316 | 3.2:-89185894 | None:intergenic |
| CAAAGGTGGGAGAGACATGT+TGG | 0.476794 | 3.2:-89186090 | None:intergenic |
| TGAACACTGAACAGGGATCA+AGG | 0.477060 | 3.2:+89185862 | MS.gene42354:intron |
| GATTCCCATGTTGGAATCAT+GGG | 0.479782 | 3.2:-89186176 | None:intergenic |
| GATACTTCTACTGTTGAGTC+TGG | 0.480255 | 3.2:+89186317 | MS.gene42354:CDS |
| TAGCAGAAGCTGCAAAGGCT+TGG | 0.482094 | 3.2:-89186355 | None:intergenic |
| TCAAGCCTTGGGTTGGGGAA+AGG | 0.483086 | 3.2:+89186495 | MS.gene42354:CDS |
| GCATCCATACGAGACGGGCT+CGG | 0.486953 | 3.2:-89186020 | None:intergenic |
| TGGTAGGAAGGGATTGGACT+TGG | 0.487033 | 3.2:-89185972 | None:intergenic |
| AATGATGATGAAAGAGGACT+TGG | 0.489656 | 3.2:-89185948 | None:intergenic |
| TTGGCAATTGATTCCCATGT+TGG | 0.490224 | 3.2:-89186185 | None:intergenic |
| ATCTCCTGCATTCTGTTATG+AGG | 0.491673 | 3.2:-89186440 | None:intergenic |
| TTGACCTGCACCCCAAACTC+TGG | 0.493982 | 3.2:-89186476 | None:intergenic |
| GCGCAGAAGCTGCGAAGAAA+GGG | 0.494226 | 3.2:-89186232 | None:intergenic |
| AAAGGTGGGAGAGACATGTT+GGG | 0.494510 | 3.2:-89186089 | None:intergenic |
| GGTTTGGGATTTCTTGAAGT+TGG | 0.496117 | 3.2:-89186155 | None:intergenic |
| AGGCTTGGAAATTCAACCAT+TGG | 0.499150 | 3.2:-89186340 | None:intergenic |
| GGTTTCATAAAGTTCAATGT+AGG | 0.500604 | 3.2:-89186389 | None:intergenic |
| CTCGGAAATGAAGAGGAAGA+TGG | 0.501823 | 3.2:-89186002 | None:intergenic |
| GATGGGCTAACTTGGTAGGA+AGG | 0.510153 | 3.2:-89185984 | None:intergenic |
| TAAAAGTACCCTGCGATAAG+TGG | 0.514725 | 3.2:-89185066 | None:intergenic |
| TGCGAAGAAAGGGTGATTGA+AGG | 0.517777 | 3.2:-89186222 | None:intergenic |
| GATGAGATAGGTGGCGTCAC+AGG | 0.527145 | 3.2:-89186131 | None:intergenic |
| CTAACTTGGTAGGAAGGGAT+TGG | 0.532618 | 3.2:-89185978 | None:intergenic |
| TGATTTAGCAGAAGCTGCAA+AGG | 0.535526 | 3.2:-89186360 | None:intergenic |
| TGTTTGCATCCATACGAGAC+GGG | 0.538446 | 3.2:-89186025 | None:intergenic |
| CTGTTTGATATTCTCAAAGG+TGG | 0.543504 | 3.2:-89186104 | None:intergenic |
| TTCCGGTGGGATGGACTAGT+AGG | 0.544807 | 3.2:-89186254 | None:intergenic |
| GTATAAAGGTTCCGGTGGGA+TGG | 0.546631 | 3.2:-89186263 | None:intergenic |
| TGAATCCTTTCCCCAACCCA+AGG | 0.565111 | 3.2:-89186500 | None:intergenic |
| AAGATGGCACCACTTATCGC+AGG | 0.566281 | 3.2:+89185057 | None:intergenic |
| GGATCAAGGGCAGAAACACC+AGG | 0.568579 | 3.2:+89185876 | MS.gene42354:CDS |
| GGAAGATGGGCTAACTTGGT+AGG | 0.570068 | 3.2:-89185988 | None:intergenic |
| ATGGGCTAACTTGGTAGGAA+GGG | 0.578259 | 3.2:-89185983 | None:intergenic |
| CCAAACCCATGATTCCAACA+TGG | 0.578571 | 3.2:+89186171 | MS.gene42354:CDS |
| CTACTGTTGAGTCTGGCCAA+TGG | 0.579821 | 3.2:+89186324 | MS.gene42354:CDS |
| TTGTTTGCATCCATACGAGA+CGG | 0.580413 | 3.2:-89186026 | None:intergenic |
| CTTGGAAATGATGATGAAAG+AGG | 0.585676 | 3.2:-89185954 | None:intergenic |
| TATACTAGTCTTCATTAACT+AGG | 0.587526 | 3.2:-89186572 | None:intergenic |
| TCGGAAATGAAGAGGAAGAT+GGG | 0.591259 | 3.2:-89186001 | None:intergenic |
| GAACACTGAACAGGGATCAA+GGG | 0.592233 | 3.2:+89185863 | MS.gene42354:intron |
| GCTGCCTCATAACAGAATGC+AGG | 0.597111 | 3.2:+89186436 | MS.gene42354:CDS |
| GATTTCAGAGCCAGAGTTTG+GGG | 0.597331 | 3.2:+89186466 | MS.gene42354:CDS |
| GTGGTGTATAAAGGTTCCGG+TGG | 0.599334 | 3.2:-89186268 | None:intergenic |
| TGGGGAAAGGATTCATGAAG+TGG | 0.599526 | 3.2:+89186508 | MS.gene42354:CDS |
| GCGCTGTTTGATATTCTCAA+AGG | 0.602416 | 3.2:-89186107 | None:intergenic |
| CGCCTACTAGTCCATCCCAC+CGG | 0.608831 | 3.2:+89186252 | MS.gene42354:CDS |
| TGTTTGATATTCTCAAAGGT+GGG | 0.611100 | 3.2:-89186103 | None:intergenic |
| ATAACAGAATGCAGGAGATG+AGG | 0.612424 | 3.2:+89186444 | MS.gene42354:CDS |
| AGGGCAGAAACACCAGGCGA+CGG | 0.612624 | 3.2:+89185882 | MS.gene42354:CDS |
| CAAACCCATGATTCCAACAT+GGG | 0.619565 | 3.2:+89186172 | MS.gene42354:CDS |
| AGACGGGCTCGGAAATGAAG+AGG | 0.620195 | 3.2:-89186009 | None:intergenic |
| GCTTACTCTTGGAAATGGAA+AGG | 0.624748 | 3.2:+89186547 | MS.gene42354:CDS |
| GGGGAAAGGATTCATGAAGT+GGG | 0.628370 | 3.2:+89186509 | MS.gene42354:CDS |
| AATCAATTGCCAAAGCATCA+GGG | 0.645925 | 3.2:+89186195 | MS.gene42354:CDS |
| TCACATTCAGGAATAGTAGG+TGG | 0.669687 | 3.2:-89186287 | None:intergenic |
| AGATGGCACCACTTATCGCA+GGG | 0.680637 | 3.2:+89185058 | None:intergenic |
| TGGTGTATAAAGGTTCCGGT+GGG | 0.684999 | 3.2:-89186267 | None:intergenic |
| AAGGTGGGAGAGACATGTTG+GGG | 0.734444 | 3.2:-89186088 | None:intergenic |
| GAAGTTGGTGATGAGATAGG+TGG | 0.736539 | 3.2:-89186140 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAGTAAAAATAAGTTCATT+AGG | - | chr3.2:89185719-89185738 | None:intergenic | 15.0% |
| !! | TTGAATAAACAACTTAATTA+AGG | - | chr3.2:89185786-89185805 | None:intergenic | 15.0% |
| !!! | TATCTTATAAGAATATGTTT+TGG | + | chr3.2:89185815-89185834 | MS.gene42354:intron | 15.0% |
| !!! | TTTATTTTTTTGAAGAAAGA+TGG | - | chr3.2:89185505-89185524 | None:intergenic | 15.0% |
| !! | AATCTGAGTCAAATTAATTT+CGG | + | chr3.2:89185275-89185294 | MS.gene42354:intron | 20.0% |
| !!! | AGTTTTGATGAAATTTTGTT+TGG | + | chr3.2:89185211-89185230 | MS.gene42354:intron | 20.0% |
| ! | AACTAGTAGTTGATTAATTG+AGG | - | chr3.2:89185312-89185331 | None:intergenic | 25.0% |
| ! | TGAACAATCTAATCTGATTT+GGG | + | chr3.2:89185575-89185594 | MS.gene42354:intron | 25.0% |
| ! | TTGAACAATCTAATCTGATT+TGG | + | chr3.2:89185574-89185593 | MS.gene42354:intron | 25.0% |
| !!! | TGATGAAATTTTGTTTGGTT+TGG | + | chr3.2:89185216-89185235 | MS.gene42354:intron | 25.0% |
| !!! | TTGGATTTTGAGATGAAAAT+GGG | - | chr3.2:89185932-89185951 | None:intergenic | 25.0% |
| AAACAATGGGTAATCCTAAT+TGG | + | chr3.2:89185538-89185557 | MS.gene42354:intron | 30.0% | |
| GATTCAAATCTTACTGCAAT+TGG | + | chr3.2:89185166-89185185 | MS.gene42354:intron | 30.0% | |
| GGTTTCATAAAGTTCAATGT+AGG | - | chr3.2:89186392-89186411 | None:intergenic | 30.0% | |
| TCCAAAAAAGAAAAGTGAGA+GGG | - | chr3.2:89185095-89185114 | None:intergenic | 30.0% | |
| TGATAGCATTTCATTTCACA+CGG | - | chr3.2:89185462-89185481 | None:intergenic | 30.0% | |
| TGTTTGATATTCTCAAAGGT+GGG | - | chr3.2:89186106-89186125 | None:intergenic | 30.0% | |
| TTATGCTGCTCATTAATTAC+AGG | - | chr3.2:89186413-89186432 | None:intergenic | 30.0% | |
| TTCCTTTGACTGAAAATACA+AGG | - | chr3.2:89185249-89185268 | None:intergenic | 30.0% | |
| ! | ATTTTCCAATGTGGCATAAT+TGG | - | chr3.2:89185436-89185455 | None:intergenic | 30.0% |
| ! | ATTTTGTATCTACGTACTGT+TGG | + | chr3.2:89185144-89185163 | MS.gene42354:intron | 30.0% |
| !!! | CTTGGATTTTGAGATGAAAA+TGG | - | chr3.2:89185933-89185952 | None:intergenic | 30.0% |
| AATCAAACACAGCACCAATT+AGG | - | chr3.2:89185555-89185574 | None:intergenic | 35.0% | |
| ATCAGTGATGTGTGACTATT+TGG | + | chr3.2:89185629-89185648 | MS.gene42354:intron | 35.0% | |
| CAAATCTTACTGCAATTGGT+TGG | + | chr3.2:89185170-89185189 | MS.gene42354:intron | 35.0% | |
| CATAGTCACCTACCTTAAAT+TGG | - | chr3.2:89185403-89185422 | None:intergenic | 35.0% | |
| CTCCAAAAAAGAAAAGTGAG+AGG | - | chr3.2:89185096-89185115 | None:intergenic | 35.0% | |
| CTGTTTGATATTCTCAAAGG+TGG | - | chr3.2:89186107-89186126 | None:intergenic | 35.0% | |
| GAATAGTAGGTGGTGTATAA+AGG | - | chr3.2:89186280-89186299 | None:intergenic | 35.0% | |
| TCATCACATTCAGGAATAGT+AGG | - | chr3.2:89186293-89186312 | None:intergenic | 35.0% | |
| TTGTGAATGAACACTGAACA+GGG | + | chr3.2:89185855-89185874 | MS.gene42354:intron | 35.0% | |
| TTTGTGAATGAACACTGAAC+AGG | + | chr3.2:89185854-89185873 | MS.gene42354:intron | 35.0% | |
| ! | AATCAATTGCCAAAGCATCA+GGG | + | chr3.2:89186195-89186214 | MS.gene42354:CDS | 35.0% |
| ! | AATGATGATGAAAGAGGACT+TGG | - | chr3.2:89185951-89185970 | None:intergenic | 35.0% |
| ! | CTTGGAAATGATGATGAAAG+AGG | - | chr3.2:89185957-89185976 | None:intergenic | 35.0% |
| ! | TGCCTTGTATTTTCAGTCAA+AGG | + | chr3.2:89185244-89185263 | MS.gene42354:intron | 35.0% |
| ! | TGCTTTGTCCAATTTAAGGT+AGG | + | chr3.2:89185392-89185411 | MS.gene42354:intron | 35.0% |
| !! | TCCCTCTCACTTTTCTTTTT+TGG | + | chr3.2:89185091-89185110 | MS.gene42354:intron | 35.0% |
| !! | TTGCTGCTTTGTCCAATTTA+AGG | + | chr3.2:89185388-89185407 | MS.gene42354:CDS | 35.0% |
| AGGCTTGGAAATTCAACCAT+TGG | - | chr3.2:89186343-89186362 | None:intergenic | 40.0% | |
| ATAACAGAATGCAGGAGATG+AGG | + | chr3.2:89186444-89186463 | MS.gene42354:CDS | 40.0% | |
| ATCTCCTGCATTCTGTTATG+AGG | - | chr3.2:89186443-89186462 | None:intergenic | 40.0% | |
| CAAACCCATGATTCCAACAT+GGG | + | chr3.2:89186172-89186191 | MS.gene42354:CDS | 40.0% | |
| CATGTTGGAATCATGGGTTT+GGG | - | chr3.2:89186173-89186192 | None:intergenic | 40.0% | |
| GATACTTCTACTGTTGAGTC+TGG | + | chr3.2:89186317-89186336 | MS.gene42354:CDS | 40.0% | |
| GATTCCCATGTTGGAATCAT+GGG | - | chr3.2:89186179-89186198 | None:intergenic | 40.0% | |
| GCGCTGTTTGATATTCTCAA+AGG | - | chr3.2:89186110-89186129 | None:intergenic | 40.0% | |
| GCTTACTCTTGGAAATGGAA+AGG | + | chr3.2:89186547-89186566 | MS.gene42354:CDS | 40.0% | |
| GTATCAGACTCATCACATTC+AGG | - | chr3.2:89186302-89186321 | None:intergenic | 40.0% | |
| TAGGTGGTGTATAAAGGTTC+CGG | - | chr3.2:89186274-89186293 | None:intergenic | 40.0% | |
| TCACATTCAGGAATAGTAGG+TGG | - | chr3.2:89186290-89186309 | None:intergenic | 40.0% | |
| TCCAATGTGGCATAATTGGA+TGG | - | chr3.2:89185432-89185451 | None:intergenic | 40.0% | |
| TCCATCCAATTATGCCACAT+TGG | + | chr3.2:89185428-89185447 | MS.gene42354:intron | 40.0% | |
| TCGGAAATGAAGAGGAAGAT+GGG | - | chr3.2:89186004-89186023 | None:intergenic | 40.0% | |
| TGATTCCCATGTTGGAATCA+TGG | - | chr3.2:89186180-89186199 | None:intergenic | 40.0% | |
| TGATTTAGCAGAAGCTGCAA+AGG | - | chr3.2:89186363-89186382 | None:intergenic | 40.0% | |
| TTGGAGCTTACTCTTGGAAA+TGG | + | chr3.2:89186542-89186561 | MS.gene42354:CDS | 40.0% | |
| TTGTTTGCATCCATACGAGA+CGG | - | chr3.2:89186029-89186048 | None:intergenic | 40.0% | |
| ! | ACACGGAAGATTTTCCAATG+TGG | - | chr3.2:89185445-89185464 | None:intergenic | 40.0% |
| ! | GAATCAATTGCCAAAGCATC+AGG | + | chr3.2:89186194-89186213 | MS.gene42354:CDS | 40.0% |
| ! | GATGATTTGGAGCTTACTCT+TGG | + | chr3.2:89186536-89186555 | MS.gene42354:CDS | 40.0% |
| ! | GGTTTGGGATTTCTTGAAGT+TGG | - | chr3.2:89186158-89186177 | None:intergenic | 40.0% |
| ! | TTGGCAATTGATTCCCATGT+TGG | - | chr3.2:89186188-89186207 | None:intergenic | 40.0% |
| !! | CTTGAAGTTGGTGATGAGAT+AGG | - | chr3.2:89186146-89186165 | None:intergenic | 40.0% |
| !! | TAAAAGTACCCTGCGATAAG+TGG | - | chr3.2:89185069-89185088 | None:intergenic | 40.0% |
| AAAGGTGGGAGAGACATGTT+GGG | - | chr3.2:89186092-89186111 | None:intergenic | 45.0% | |
| AGGATTTCAGAGCCAGAGTT+TGG | + | chr3.2:89186464-89186483 | MS.gene42354:CDS | 45.0% | |
| CCAAACCCATGATTCCAACA+TGG | + | chr3.2:89186171-89186190 | MS.gene42354:CDS | 45.0% | |
| CCATGTTGGAATCATGGGTT+TGG | - | chr3.2:89186174-89186193 | None:intergenic | 45.0% | |
| CTAACTTGGTAGGAAGGGAT+TGG | - | chr3.2:89185981-89186000 | None:intergenic | 45.0% | |
| CTCGGAAATGAAGAGGAAGA+TGG | - | chr3.2:89186005-89186024 | None:intergenic | 45.0% | |
| GAACACTGAACAGGGATCAA+GGG | + | chr3.2:89185863-89185882 | MS.gene42354:intron | 45.0% | |
| GATTTCAGAGCCAGAGTTTG+GGG | + | chr3.2:89186466-89186485 | MS.gene42354:CDS | 45.0% | |
| GGATTTCAGAGCCAGAGTTT+GGG | + | chr3.2:89186465-89186484 | MS.gene42354:CDS | 45.0% | |
| GGGGAAAGGATTCATGAAGT+GGG | + | chr3.2:89186509-89186528 | MS.gene42354:CDS | 45.0% | |
| TGAACACTGAACAGGGATCA+AGG | + | chr3.2:89185862-89185881 | MS.gene42354:intron | 45.0% | |
| TGCGAAGAAAGGGTGATTGA+AGG | - | chr3.2:89186225-89186244 | None:intergenic | 45.0% | |
| TGGGGAAAGGATTCATGAAG+TGG | + | chr3.2:89186508-89186527 | MS.gene42354:CDS | 45.0% | |
| TGGTGTATAAAGGTTCCGGT+GGG | - | chr3.2:89186270-89186289 | None:intergenic | 45.0% | |
| TGTTTGCATCCATACGAGAC+GGG | - | chr3.2:89186028-89186047 | None:intergenic | 45.0% | |
| ! | AAGGATTCATGAAGTGGGCT+TGG | + | chr3.2:89186514-89186533 | MS.gene42354:CDS | 45.0% |
| ! | ATGGGCTAACTTGGTAGGAA+GGG | - | chr3.2:89185986-89186005 | None:intergenic | 45.0% |
| ! | TGAAGTGGGCTTGGATGATT+TGG | + | chr3.2:89186523-89186542 | MS.gene42354:CDS | 45.0% |
| !! | AAGAGGAAGATGGGCTAACT+TGG | - | chr3.2:89185995-89186014 | None:intergenic | 45.0% |
| !! | GAAGTTGGTGATGAGATAGG+TGG | - | chr3.2:89186143-89186162 | None:intergenic | 45.0% |
| !! | AATAAAAAATAAAAAAACAA+TGG | + | chr3.2:89185524-89185543 | MS.gene42354:intron | 5.0% |
| !! | ATAAAAAATAAAAAAACAAT+GGG | + | chr3.2:89185525-89185544 | MS.gene42354:intron | 5.0% |
| AAGGTGGGAGAGACATGTTG+GGG | - | chr3.2:89186091-89186110 | None:intergenic | 50.0% | |
| CAAAGGTGGGAGAGACATGT+TGG | - | chr3.2:89186093-89186112 | None:intergenic | 50.0% | |
| CTACTGTTGAGTCTGGCCAA+TGG | + | chr3.2:89186324-89186343 | MS.gene42354:CDS | 50.0% | |
| GAAGGATGTCCCTGATGCTT+TGG | - | chr3.2:89186207-89186226 | None:intergenic | 50.0% | |
| GCTGCCTCATAACAGAATGC+AGG | + | chr3.2:89186436-89186455 | MS.gene42354:CDS | 50.0% | |
| GTATAAAGGTTCCGGTGGGA+TGG | - | chr3.2:89186266-89186285 | None:intergenic | 50.0% | |
| GTGGTGTATAAAGGTTCCGG+TGG | - | chr3.2:89186271-89186290 | None:intergenic | 50.0% | |
| TAGCAGAAGCTGCAAAGGCT+TGG | - | chr3.2:89186358-89186377 | None:intergenic | 50.0% | |
| TGAATCCTTTCCCCAACCCA+AGG | - | chr3.2:89186503-89186522 | None:intergenic | 50.0% | |
| TGGTAGGAAGGGATTGGACT+TGG | - | chr3.2:89185975-89185994 | None:intergenic | 50.0% | |
| !! | GATGGGCTAACTTGGTAGGA+AGG | - | chr3.2:89185987-89186006 | None:intergenic | 50.0% |
| !! | GGAAGATGGGCTAACTTGGT+AGG | - | chr3.2:89185991-89186010 | None:intergenic | 50.0% |
| AAATTTCCTGCACCGTCGCC+TGG | - | chr3.2:89185897-89185916 | None:intergenic | 55.0% | |
| ATTTCCGAGCCCGTCTCGTA+TGG | + | chr3.2:89186016-89186035 | MS.gene42354:CDS | 55.0% | |
| GATGAGATAGGTGGCGTCAC+AGG | - | chr3.2:89186134-89186153 | None:intergenic | 55.0% | |
| GCGCAGAAGCTGCGAAGAAA+GGG | - | chr3.2:89186235-89186254 | None:intergenic | 55.0% | |
| GGATCAAGGGCAGAAACACC+AGG | + | chr3.2:89185876-89185895 | MS.gene42354:CDS | 55.0% | |
| GGGAACATGCTGCGAGCATA+TGG | - | chr3.2:89186071-89186090 | None:intergenic | 55.0% | |
| TGCAGGTCAAGCCTTGGGTT+GGG | + | chr3.2:89186489-89186508 | MS.gene42354:CDS | 55.0% | |
| TTGACCTGCACCCCAAACTC+TGG | - | chr3.2:89186479-89186498 | None:intergenic | 55.0% | |
| ! | AGACGGGCTCGGAAATGAAG+AGG | - | chr3.2:89186012-89186031 | None:intergenic | 55.0% |
| !! | TCAAGCCTTGGGTTGGGGAA+AGG | + | chr3.2:89186495-89186514 | MS.gene42354:CDS | 55.0% |
| !! | TTCCGGTGGGATGGACTAGT+AGG | - | chr3.2:89186257-89186276 | None:intergenic | 55.0% |
| AGGGCAGAAACACCAGGCGA+CGG | + | chr3.2:89185882-89185901 | MS.gene42354:CDS | 60.0% | |
| CGCCTACTAGTCCATCCCAC+CGG | + | chr3.2:89186252-89186271 | MS.gene42354:CDS | 60.0% | |
| GGCGCAGAAGCTGCGAAGAA+AGG | - | chr3.2:89186236-89186255 | None:intergenic | 60.0% | |
| GTGCAGGTCAAGCCTTGGGT+TGG | + | chr3.2:89186488-89186507 | MS.gene42354:CDS | 60.0% | |
| TGGGGTGCAGGTCAAGCCTT+GGG | + | chr3.2:89186484-89186503 | MS.gene42354:CDS | 60.0% | |
| TTGGGGTGCAGGTCAAGCCT+TGG | + | chr3.2:89186483-89186502 | MS.gene42354:CDS | 60.0% | |
| ! | AGAGCCAGAGTTTGGGGTGC+AGG | + | chr3.2:89186472-89186491 | MS.gene42354:CDS | 60.0% |
| ! | GCAGGTCAAGCCTTGGGTTG+GGG | + | chr3.2:89186490-89186509 | MS.gene42354:CDS | 60.0% |
| ! | GCATCCATACGAGACGGGCT+CGG | - | chr3.2:89186023-89186042 | None:intergenic | 60.0% |
| GAAACACCAGGCGACGGTGC+AGG | + | chr3.2:89185888-89185907 | MS.gene42354:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 89185060 | 89186580 | 89185060 | ID=MS.gene42354 |
| chr3.2 | mRNA | 89185060 | 89186580 | 89185060 | ID=MS.gene42354.t1;Parent=MS.gene42354 |
| chr3.2 | exon | 89185060 | 89185079 | 89185060 | ID=MS.gene42354.t1.exon1;Parent=MS.gene42354.t1 |
| chr3.2 | CDS | 89185060 | 89185079 | 89185060 | ID=cds.MS.gene42354.t1;Parent=MS.gene42354.t1 |
| chr3.2 | exon | 89185376 | 89185409 | 89185376 | ID=MS.gene42354.t1.exon2;Parent=MS.gene42354.t1 |
| chr3.2 | CDS | 89185376 | 89185409 | 89185376 | ID=cds.MS.gene42354.t1;Parent=MS.gene42354.t1 |
| chr3.2 | exon | 89185876 | 89186580 | 89185876 | ID=MS.gene42354.t1.exon3;Parent=MS.gene42354.t1 |
| chr3.2 | CDS | 89185876 | 89186580 | 89185876 | ID=cds.MS.gene42354.t1;Parent=MS.gene42354.t1 |
| Gene Sequence |
| Protein sequence |
