AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene42535

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene42535.t1 MTR_6g470940 97.087 103 3 0 1 103 913 1015 5.68e-65 213
MS.gene42535.t1 MTR_5g069000 86.408 103 14 0 1 103 799 901 5.47e-59 195
MS.gene42535.t1 MTR_4g035835 85.437 103 15 0 1 103 795 897 8.30e-59 195
MS.gene42535.t1 MTR_7g073520 46.078 102 55 0 1 102 184 285 8.22e-28 105
MS.gene42535.t1 MTR_3g104700 47.573 103 54 0 1 103 130 232 3.17e-27 104
MS.gene42535.t1 MTR_3g104700 47.573 103 54 0 1 103 130 232 3.92e-27 104
MS.gene42535.t1 MTR_4g107280 46.078 102 55 0 1 102 132 233 1.07e-26 102
MS.gene42535.t1 MTR_1g442790 47.573 103 54 0 1 103 146 248 1.98e-26 102
MS.gene42535.t1 MTR_1g442790 47.573 103 54 0 1 103 146 248 2.16e-26 102
MS.gene42535.t1 MTR_2g040150 49.515 103 52 0 1 103 149 251 5.79e-26 100
MS.gene42535.t1 MTR_1g069735 44.660 103 57 0 1 103 156 258 1.08e-24 97.4
MS.gene42535.t1 MTR_1g069735 44.660 103 57 0 1 103 156 258 1.14e-24 97.4
MS.gene42535.t1 MTR_1g042700 44.660 103 57 0 1 103 151 253 1.31e-24 97.4
MS.gene42535.t1 MTR_1g069735 44.660 103 57 0 1 103 156 258 1.40e-24 97.4
MS.gene42535.t1 MTR_7g097150 44.660 103 57 0 1 103 156 258 1.65e-24 97.1
MS.gene42535.t1 MTR_1g019340 44.660 103 57 0 1 103 144 246 1.68e-24 97.1
MS.gene42535.t1 MTR_1g075880 42.718 103 59 0 1 103 153 255 3.21e-24 96.3
MS.gene42535.t1 MTR_1g060790 53.261 92 41 2 13 102 520 611 1.86e-23 94.4
MS.gene42535.t1 MTR_7g104180 53.261 92 41 2 13 102 542 633 4.54e-23 93.2
MS.gene42535.t1 MTR_1g019340 44.660 103 57 0 1 103 144 246 4.70e-23 92.8
MS.gene42535.t1 MTR_2g062850 50.000 92 44 1 13 102 219 310 3.31e-22 90.5
MS.gene42535.t1 MTR_1g090917 39.806 103 62 0 1 103 87 189 6.54e-21 86.7
MS.gene42535.t1 MTR_1g090917 39.806 103 62 0 1 103 87 189 6.65e-21 86.7
MS.gene42535.t1 MTR_3g010260 46.316 95 49 1 10 102 462 556 7.52e-21 86.7
MS.gene42535.t1 MTR_8g070530 40.385 104 60 1 1 102 635 738 7.99e-21 86.7
MS.gene42535.t1 MTR_7g033640 47.826 92 46 2 13 102 282 373 1.77e-20 85.5
MS.gene42535.t1 MTR_8g035890 39.394 99 60 0 5 103 56 154 1.95e-20 83.6
MS.gene42535.t1 MTR_8g006870 51.087 92 43 2 13 102 420 511 1.12e-19 83.2
MS.gene42535.t1 MTR_7g081665 50.000 92 44 2 13 102 414 505 2.09e-19 82.4
MS.gene42535.t1 MTR_2g095980 38.462 104 62 1 1 102 409 512 2.18e-19 82.4
MS.gene42535.t1 MTR_2g095980 38.462 104 62 1 1 102 664 767 2.24e-19 82.4
MS.gene42535.t1 MTR_2g095980 38.462 104 62 1 1 102 664 767 2.24e-19 82.4
MS.gene42535.t1 MTR_6g004720 45.652 92 48 2 13 102 301 392 2.57e-19 82.4
MS.gene42535.t1 MTR_2g027240 43.478 92 50 1 13 102 254 345 3.76e-19 82.0
MS.gene42535.t1 MTR_2g018990 45.745 94 45 2 13 102 137 228 1.92e-18 79.7
MS.gene42535.t1 MTR_5g067150 34.746 118 67 1 1 108 45 162 2.63e-18 79.3
MS.gene42535.t1 MTR_8g086380 37.864 103 63 1 1 103 62 163 1.12e-17 77.4
MS.gene42535.t1 MTR_5g067150 34.746 118 67 1 1 108 45 162 1.28e-17 77.4
MS.gene42535.t1 MTR_5g067150 34.746 118 67 1 1 108 45 162 1.40e-17 77.0
MS.gene42535.t1 MTR_8g040300 39.560 91 55 0 13 103 58 148 1.42e-17 75.9
MS.gene42535.t1 MTR_7g053200 39.450 109 59 2 1 102 51 159 1.50e-17 77.0
MS.gene42535.t1 MTR_4g131060 35.922 103 65 1 1 103 54 155 4.23e-17 75.9
MS.gene42535.t1 MTR_8g011780 40.217 92 53 1 13 102 78 169 4.49e-17 75.9
MS.gene42535.t1 MTR_2g085065 41.304 92 52 1 13 102 142 233 4.96e-17 75.9
MS.gene42535.t1 MTR_8g024100 34.375 96 63 0 2 97 51 146 8.70e-17 75.1
MS.gene42535.t1 MTR_4g107280 42.466 73 42 0 30 102 122 194 1.01e-16 74.7
MS.gene42535.t1 MTR_3g110405 35.644 101 65 0 3 103 75 175 1.21e-16 73.9
MS.gene42535.t1 MTR_4g029020 36.458 96 60 1 8 103 55 149 1.36e-16 74.3
MS.gene42535.t1 MTR_5g088350 33.981 103 68 0 1 103 49 151 1.41e-16 74.3
MS.gene42535.t1 MTR_8g089420 42.391 92 51 1 13 102 133 224 1.47e-16 74.3
MS.gene42535.t1 MTR_8g098425 35.000 100 65 0 4 103 449 548 1.95e-16 74.3
MS.gene42535.t1 MTR_4g061610 35.514 107 64 1 1 102 676 782 1.96e-16 74.3
MS.gene42535.t1 MTR_4g113790 40.777 103 58 3 2 102 136 237 2.58e-16 73.6
MS.gene42535.t1 MTR_2g049790 36.893 103 60 1 1 103 64 161 3.61e-16 73.2
MS.gene42535.t1 MTR_8g024590 33.010 103 69 0 1 103 53 155 5.00e-16 72.8
MS.gene42535.t1 MTR_5g088350 33.981 103 68 0 1 103 49 151 5.86e-16 72.8
MS.gene42535.t1 MTR_5g088350 33.981 103 68 0 1 103 49 151 5.96e-16 72.4
MS.gene42535.t1 MTR_8g024600 33.010 103 69 0 1 103 53 155 6.27e-16 72.4
MS.gene42535.t1 MTR_2g069990 40.860 93 53 1 12 102 143 235 1.60e-15 71.6
MS.gene42535.t1 MTR_5g075100 36.264 91 58 0 13 103 71 161 1.72e-15 71.2
MS.gene42535.t1 MTR_8g446990 40.217 92 53 1 13 102 182 273 1.83e-15 71.2
MS.gene42535.t1 MTR_1g100250 31.959 97 66 0 7 103 455 551 2.17e-15 71.2
MS.gene42535.t1 MTR_2g016340 32.039 103 69 1 1 103 48 149 2.58e-15 70.9
MS.gene42535.t1 MTR_7g072575 37.500 96 59 1 8 103 55 149 2.67e-15 70.9
MS.gene42535.t1 MTR_4g065080 38.043 92 55 1 13 102 70 161 6.87e-15 69.7
MS.gene42535.t1 MTR_1g103760 36.842 95 59 1 9 103 56 149 7.66e-15 69.3
MS.gene42535.t1 MTR_4g006970 33.663 101 66 1 3 103 58 157 8.47e-15 69.3
MS.gene42535.t1 MTR_1g090917 48.438 64 33 0 40 103 1 64 1.34e-14 68.6
MS.gene42535.t1 MTR_3g466400 32.039 103 69 1 1 103 50 151 1.37e-14 68.9
MS.gene42535.t1 MTR_1g090917 48.438 64 33 0 40 103 1 64 1.37e-14 68.6
MS.gene42535.t1 MTR_2g020380 36.275 102 65 0 2 103 35 136 2.05e-14 68.6
MS.gene42535.t1 MTR_3g099920 33.333 96 64 0 8 103 62 157 3.30e-14 67.8
MS.gene42535.t1 MTR_4g125800 34.951 103 66 1 2 103 52 154 3.37e-14 67.0
MS.gene42535.t1 MTR_4g125800 34.951 103 66 1 2 103 105 207 4.78e-14 67.0
MS.gene42535.t1 MTR_4g125800 34.951 103 66 1 2 103 128 230 5.07e-14 67.0
MS.gene42535.t1 MTR_7g113490 35.165 91 59 0 13 103 121 211 5.78e-14 67.0
MS.gene42535.t1 MTR_4g082325 35.789 95 57 2 13 103 189 283 7.14e-14 66.6
MS.gene42535.t1 MTR_8g093730 36.264 91 58 0 13 103 349 439 7.86e-14 66.6
MS.gene42535.t1 MTR_3g466480 32.323 99 66 1 5 103 61 158 8.34e-14 66.6
MS.gene42535.t1 MTR_1g105290 34.066 91 60 0 13 103 108 198 8.42e-14 66.6
MS.gene42535.t1 MTR_1g105290 34.066 91 60 0 13 103 108 198 8.64e-14 66.6
MS.gene42535.t1 MTR_1g105290 34.066 91 60 0 13 103 108 198 8.69e-14 66.6
MS.gene42535.t1 MTR_8g079560 34.737 95 58 1 2 96 60 150 9.44e-14 66.2
MS.gene42535.t1 MTR_3g096230 35.227 88 57 0 16 103 297 384 9.70e-14 66.2
MS.gene42535.t1 MTR_3g096230 35.227 88 57 0 16 103 297 384 9.93e-14 66.2
MS.gene42535.t1 MTR_2g105010 32.292 96 64 1 8 103 57 151 9.95e-14 66.2
MS.gene42535.t1 MTR_1g076370 36.585 82 52 0 22 103 79 160 1.16e-13 66.2
MS.gene42535.t1 MTR_1g013700 35.417 96 61 1 8 103 56 150 1.23e-13 65.9
MS.gene42535.t1 MTR_3g072320 35.354 99 59 2 7 103 52 147 1.40e-13 65.9
MS.gene42535.t1 MTR_4g114670 32.039 103 70 0 1 103 47 149 1.45e-13 65.9
MS.gene42535.t1 MTR_4g114670 32.039 103 70 0 1 103 47 149 1.57e-13 65.9
MS.gene42535.t1 MTR_2g045470 33.333 99 66 0 5 103 60 158 2.19e-13 65.5
MS.gene42535.t1 MTR_5g075060 29.126 103 72 1 1 103 48 149 2.54e-13 65.1
MS.gene42535.t1 MTR_1g034030 34.737 95 58 1 2 96 61 151 2.91e-13 64.7
MS.gene42535.t1 MTR_4g128820 31.068 103 71 0 1 103 46 148 3.30e-13 64.7
MS.gene42535.t1 MTR_2g078740 31.250 96 66 0 8 103 56 151 3.32e-13 65.1
MS.gene42535.t1 MTR_2g078740 31.250 96 66 0 8 103 56 151 3.32e-13 65.1
MS.gene42535.t1 MTR_2g078740 31.250 96 66 0 8 103 56 151 3.32e-13 65.1
MS.gene42535.t1 MTR_6g090470 34.483 116 73 2 2 114 104 219 3.35e-13 64.7
MS.gene42535.t1 MTR_4g086855 34.737 95 58 1 2 96 60 150 3.49e-13 64.7
MS.gene42535.t1 MTR_4g074875 33.333 96 62 1 10 103 64 159 3.74e-13 64.7
MS.gene42535.t1 MTR_4g074875 33.333 96 62 1 10 103 64 159 3.74e-13 64.7
MS.gene42535.t1 MTR_5g018050 33.673 98 61 1 2 99 55 148 4.26e-13 64.3
MS.gene42535.t1 MTR_4g075410 32.292 96 63 1 10 103 64 159 5.68e-13 64.3
MS.gene42535.t1 MTR_4g075410 32.292 96 63 1 10 103 64 159 5.68e-13 64.3
MS.gene42535.t1 MTR_8g024600 41.429 70 41 0 34 103 3 72 5.92e-13 63.9
MS.gene42535.t1 MTR_5g018050 33.673 98 61 1 2 99 55 148 1.20e-12 62.4
MS.gene42535.t1 MTR_5g045190 37.113 97 60 1 8 103 280 376 1.42e-12 63.2
MS.gene42535.t1 MTR_2g098240 34.694 98 50 2 13 102 64 155 1.84e-12 62.8
MS.gene42535.t1 MTR_6g012980 29.167 96 68 0 8 103 116 211 1.88e-12 62.8
MS.gene42535.t1 MTR_5g018050 33.333 105 64 2 1 103 21 121 1.97e-12 62.4
MS.gene42535.t1 MTR_1g034030 34.737 95 58 1 2 96 61 151 1.98e-12 62.4
MS.gene42535.t1 MTR_6g012990 33.333 96 64 0 8 103 62 157 2.48e-12 62.4
MS.gene42535.t1 MTR_5g013550 32.632 95 60 1 2 96 43 133 2.55e-12 62.0
MS.gene42535.t1 MTR_6g012990 33.333 96 64 0 8 103 62 157 2.71e-12 62.4
MS.gene42535.t1 MTR_3g097320 31.579 95 61 1 2 96 41 131 2.95e-12 62.0
MS.gene42535.t1 MTR_0464s0040 35.714 84 53 1 20 103 67 149 3.08e-12 60.5
MS.gene42535.t1 MTR_6g048250 33.333 96 64 0 8 103 62 157 3.21e-12 62.0
MS.gene42535.t1 MTR_6g048250 33.333 96 64 0 8 103 62 157 3.84e-12 61.6
MS.gene42535.t1 MTR_6g048250 33.333 96 64 0 8 103 62 157 4.10e-12 61.6
MS.gene42535.t1 MTR_2g040510 36.585 82 51 1 23 103 126 207 5.47e-12 61.2
MS.gene42535.t1 MTR_8g095330 32.632 95 60 1 2 96 42 132 9.29e-12 60.5
MS.gene42535.t1 MTR_2g006330 32.632 95 60 1 2 96 41 131 1.49e-11 60.1
MS.gene42535.t1 MTR_5g091880 35.106 94 58 1 13 103 210 303 1.73e-11 60.1
MS.gene42535.t1 MTR_4g123940 31.313 99 68 0 5 103 66 164 1.83e-11 59.7
MS.gene42535.t1 MTR_1g071480 31.313 99 55 3 13 103 51 144 1.84e-11 60.1
MS.gene42535.t1 MTR_2g017825 33.333 102 62 2 8 103 190 291 2.39e-11 59.3
MS.gene42535.t1 MTR_4g099240 32.000 100 62 2 2 101 42 135 2.56e-11 59.3
MS.gene42535.t1 MTR_4g123940 31.313 99 68 0 5 103 66 164 2.85e-11 59.3
MS.gene42535.t1 MTR_1g048630 32.967 91 60 1 13 103 54 143 3.00e-11 59.3
MS.gene42535.t1 MTR_3g095620 33.696 92 61 0 9 100 68 159 3.08e-11 58.9
MS.gene42535.t1 MTR_8g088740 33.721 86 54 2 19 103 54 137 3.49e-11 57.8
MS.gene42535.t1 MTR_7g089480 39.474 76 45 1 25 99 205 280 3.49e-11 58.9
MS.gene42535.t1 MTR_4g019410 29.592 98 69 0 2 99 55 152 4.10e-11 58.9
MS.gene42535.t1 MTR_4g019410 29.592 98 69 0 2 99 55 152 4.21e-11 58.9
MS.gene42535.t1 MTR_2g094090 39.706 68 41 0 36 103 198 265 7.59e-11 58.2
MS.gene42535.t1 MTR_2g094090 39.706 68 41 0 36 103 198 265 9.03e-11 57.8
MS.gene42535.t1 MTR_5g064540 32.632 95 60 1 2 96 41 131 9.25e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene42535.t1 AT3G17850 90.291 103 10 0 1 103 918 1020 1.28e-60 200
MS.gene42535.t1 AT5G62310 86.408 103 14 0 1 103 790 892 1.22e-59 197
MS.gene42535.t1 AT1G48490 86.408 103 14 0 1 103 864 966 1.62e-57 191
MS.gene42535.t1 AT1G48490 86.408 103 14 0 1 103 864 966 1.62e-57 191
MS.gene42535.t1 AT1G48490 86.408 103 14 0 1 103 864 966 1.62e-57 191
MS.gene42535.t1 AT1G48490 86.408 103 14 0 1 103 865 967 1.62e-57 191
MS.gene42535.t1 AT1G45160 82.524 103 18 0 1 103 706 808 8.03e-56 186
MS.gene42535.t1 AT1G45160 82.524 103 18 0 1 103 706 808 8.25e-56 186
MS.gene42535.t1 AT1G30640 49.515 103 52 0 1 103 63 165 5.59e-30 111
MS.gene42535.t1 AT1G30640 49.515 103 52 0 1 103 156 258 9.53e-30 111
MS.gene42535.t1 AT1G30640 49.515 103 52 0 1 103 156 258 9.53e-30 111
MS.gene42535.t1 AT4G33080 48.544 103 53 0 1 103 130 232 1.31e-28 108
MS.gene42535.t1 AT4G33080 48.544 103 53 0 1 103 130 232 1.49e-28 108
MS.gene42535.t1 AT3G08730 46.078 102 55 0 1 102 170 271 8.88e-28 105
MS.gene42535.t1 AT3G08730 46.078 102 55 0 1 102 170 271 8.88e-28 105
MS.gene42535.t1 AT3G08720 46.078 102 55 0 1 102 176 277 9.25e-28 105
MS.gene42535.t1 AT3G08720 46.078 102 55 0 1 102 176 277 9.25e-28 105
MS.gene42535.t1 AT3G08720 46.078 102 55 0 1 102 176 277 9.25e-28 105
MS.gene42535.t1 AT3G08720 46.078 102 55 0 1 102 176 277 9.25e-28 105
MS.gene42535.t1 AT5G09890 46.602 103 55 0 1 103 138 240 5.90e-27 103
MS.gene42535.t1 AT5G09890 46.602 103 55 0 1 103 138 240 5.93e-27 103
MS.gene42535.t1 AT4G14350 47.573 103 54 0 1 103 155 257 1.48e-26 102
MS.gene42535.t1 AT4G14350 47.573 103 54 0 1 103 155 257 1.49e-26 102
MS.gene42535.t1 AT4G14350 47.573 103 54 0 1 103 155 257 1.49e-26 102
MS.gene42535.t1 AT4G14350 47.573 103 54 0 1 103 155 257 1.49e-26 102
MS.gene42535.t1 AT2G20470 45.631 103 56 0 1 103 160 262 5.59e-26 101
MS.gene42535.t1 AT2G20470 45.631 103 56 0 1 103 160 262 6.08e-26 101
MS.gene42535.t1 AT2G20470 45.631 103 56 0 1 103 160 262 6.08e-26 101
MS.gene42535.t1 AT3G23310 45.631 103 56 0 1 103 156 258 1.73e-25 99.8
MS.gene42535.t1 AT1G03920 45.631 103 56 0 1 103 60 162 2.62e-25 99.0
MS.gene42535.t1 AT1G03920 45.631 103 56 0 1 103 173 275 3.80e-25 99.0
MS.gene42535.t1 AT1G03920 45.631 103 56 0 1 103 173 275 3.80e-25 99.0
MS.gene42535.t1 AT2G19400 48.544 103 53 0 1 103 141 243 8.74e-25 97.8
MS.gene42535.t1 AT5G04510 39.806 103 62 0 1 103 80 182 1.07e-23 92.8
MS.gene42535.t1 AT5G04510 39.806 103 62 0 1 103 80 182 2.70e-23 93.2
MS.gene42535.t1 AT3G52890 46.154 104 54 2 1 102 574 677 3.82e-23 93.2
MS.gene42535.t1 AT3G52890 46.154 104 54 2 1 102 574 677 3.82e-23 93.2
MS.gene42535.t1 AT3G52890 46.154 104 54 2 1 102 574 677 3.82e-23 93.2
MS.gene42535.t1 AT3G52890 46.154 104 54 2 1 102 574 677 3.82e-23 93.2
MS.gene42535.t1 AT5G04510 39.806 103 62 0 1 103 80 182 4.00e-23 93.2
MS.gene42535.t1 AT3G10540 40.777 103 61 0 1 103 81 183 4.66e-23 92.8
MS.gene42535.t1 AT2G36350 48.387 93 46 1 12 102 606 698 1.16e-21 89.0
MS.gene42535.t1 AT1G16440 46.739 92 47 1 13 102 163 254 2.81e-21 87.8
MS.gene42535.t1 AT5G58140 40.385 104 60 1 1 102 613 716 3.45e-21 87.8
MS.gene42535.t1 AT5G58140 40.385 104 60 1 1 102 613 716 3.45e-21 87.8
MS.gene42535.t1 AT5G58140 40.385 104 60 1 1 102 613 716 3.45e-21 87.8
MS.gene42535.t1 AT5G58140 40.385 104 60 1 1 102 613 716 3.45e-21 87.8
MS.gene42535.t1 AT5G58140 40.385 104 60 1 1 102 613 716 3.45e-21 87.8
MS.gene42535.t1 AT5G58140 40.385 104 60 1 1 102 613 716 3.45e-21 87.8
MS.gene42535.t1 AT1G79250 46.739 92 47 1 13 102 194 285 4.25e-21 87.4
MS.gene42535.t1 AT1G79250 46.739 92 47 1 13 102 194 285 4.25e-21 87.4
MS.gene42535.t1 AT1G79250 46.739 92 47 1 13 102 194 285 4.25e-21 87.4
MS.gene42535.t1 AT1G79250 46.739 92 47 1 13 102 194 285 4.25e-21 87.4
MS.gene42535.t1 AT3G27580 45.652 92 48 1 13 102 230 321 5.13e-21 87.0
MS.gene42535.t1 AT3G27580 45.652 92 48 1 13 102 230 321 5.13e-21 87.0
MS.gene42535.t1 AT2G45490 42.857 91 52 0 13 103 70 160 8.37e-21 84.3
MS.gene42535.t1 AT2G45490 42.857 91 52 0 13 103 70 160 1.20e-20 84.3
MS.gene42535.t1 AT2G44830 52.174 92 42 2 13 102 411 502 2.77e-20 85.1
MS.gene42535.t1 AT2G44830 52.174 92 42 2 13 102 411 502 2.77e-20 85.1
MS.gene42535.t1 AT2G44830 52.174 92 42 2 13 102 411 502 2.77e-20 85.1
MS.gene42535.t1 AT5G03640 45.098 102 54 1 3 102 579 680 1.08e-19 83.6
MS.gene42535.t1 AT5G03640 45.098 102 54 1 3 102 579 680 1.08e-19 83.6
MS.gene42535.t1 AT3G12690 46.739 92 47 1 13 102 233 324 1.57e-19 82.8
MS.gene42535.t1 AT3G12690 46.739 92 47 1 13 102 233 324 1.57e-19 82.8
MS.gene42535.t1 AT3G12690 46.739 92 47 1 13 102 233 324 1.57e-19 82.8
MS.gene42535.t1 AT4G26610 44.565 92 49 2 13 102 171 262 2.48e-19 82.4
MS.gene42535.t1 AT5G47750 46.739 92 47 2 13 102 239 330 2.74e-19 82.4
MS.gene42535.t1 AT5G55910 44.565 92 49 2 13 102 157 248 3.23e-19 82.0
MS.gene42535.t1 AT5G55910 44.565 92 49 2 13 102 157 248 3.23e-19 82.0
MS.gene42535.t1 AT3G45780 39.423 104 61 1 1 102 699 802 2.07e-18 79.7
MS.gene42535.t1 AT3G45780 39.423 104 61 1 1 102 699 802 2.07e-18 79.7
MS.gene42535.t1 AT4G24400 35.593 118 66 1 1 108 45 162 2.48e-18 79.3
MS.gene42535.t1 AT4G24400 35.593 118 66 1 1 108 45 162 2.89e-18 79.3
MS.gene42535.t1 AT2G25090 35.644 101 65 0 3 103 54 154 4.86e-18 78.6
MS.gene42535.t1 AT4G18700 41.489 94 54 1 10 103 71 163 8.25e-18 78.2
MS.gene42535.t1 AT3G20830 44.048 84 45 1 21 102 83 166 8.51e-18 77.8
MS.gene42535.t1 AT5G40030 43.478 92 50 1 13 102 162 253 1.11e-17 77.8
MS.gene42535.t1 AT2G26700 40.777 103 58 3 2 102 127 228 1.18e-17 77.8
MS.gene42535.t1 AT2G34650 43.478 92 50 1 13 102 128 219 1.98e-17 77.0
MS.gene42535.t1 AT3G61960 35.052 97 63 0 1 97 45 141 3.48e-17 76.3
MS.gene42535.t1 AT3G61960 35.052 97 63 0 1 97 45 141 3.51e-17 76.3
MS.gene42535.t1 AT5G45810 40.426 94 55 1 10 103 73 165 4.35e-17 75.9
MS.gene42535.t1 AT1G29230 39.362 94 56 1 10 103 119 211 5.67e-17 75.5
MS.gene42535.t1 AT3G44610 40.217 92 53 1 13 102 127 218 8.84e-17 75.1
MS.gene42535.t1 AT2G26980 32.039 103 70 0 1 103 50 152 1.05e-16 74.7
MS.gene42535.t1 AT2G26980 32.039 103 70 0 1 103 50 152 1.20e-16 74.7
MS.gene42535.t1 AT2G26980 32.039 103 70 0 1 103 60 162 1.22e-16 74.7
MS.gene42535.t1 AT5G21222 32.039 103 70 0 1 103 49 151 1.36e-16 74.7
MS.gene42535.t1 AT5G21222 32.039 103 70 0 1 103 49 151 1.36e-16 74.7
MS.gene42535.t1 AT5G21222 32.039 103 70 0 1 103 49 151 1.36e-16 74.7
MS.gene42535.t1 AT5G21222 32.039 103 70 0 1 103 49 151 1.36e-16 74.7
MS.gene42535.t1 AT1G30270 38.095 84 52 0 20 103 86 169 1.95e-16 73.9
MS.gene42535.t1 AT1G30270 38.095 84 52 0 20 103 86 169 1.97e-16 73.9
MS.gene42535.t1 AT5G18700 39.604 101 58 1 3 103 39 136 2.02e-16 74.3
MS.gene42535.t1 AT5G25110 36.634 101 63 1 3 103 81 180 2.15e-16 73.9
MS.gene42535.t1 AT5G10930 36.893 103 64 1 1 103 49 150 2.73e-16 73.6
MS.gene42535.t1 AT2G26980 32.039 103 70 0 1 103 50 152 2.76e-16 72.4
MS.gene42535.t1 AT5G21326 34.951 103 67 0 1 103 49 151 4.59e-16 73.2
MS.gene42535.t1 AT2G26980 32.039 103 70 0 1 103 50 152 5.42e-16 72.8
MS.gene42535.t1 AT4G32830 35.644 101 65 0 3 103 69 169 6.02e-16 72.0
MS.gene42535.t1 AT2G25880 35.644 101 65 0 3 103 63 163 6.38e-16 71.6
MS.gene42535.t1 AT5G45820 37.500 96 59 1 8 103 55 149 7.55e-16 72.4
MS.gene42535.t1 AT2G25880 35.644 101 65 0 3 103 76 176 7.82e-16 71.6
MS.gene42535.t1 AT2G25880 35.644 101 65 0 3 103 124 224 9.95e-16 71.6
MS.gene42535.t1 AT5G01810 34.951 103 66 1 1 103 48 149 1.81e-15 71.2
MS.gene42535.t1 AT5G01810 34.951 103 66 1 1 103 48 149 1.81e-15 71.2
MS.gene42535.t1 AT5G01810 34.951 103 66 1 1 103 48 149 1.96e-15 71.2
MS.gene42535.t1 AT2G34180 34.951 103 66 1 1 103 93 194 2.07e-15 71.2
MS.gene42535.t1 AT1G01140 33.010 103 69 0 1 103 55 157 2.71e-15 70.9
MS.gene42535.t1 AT1G01140 33.010 103 69 0 1 103 55 157 2.71e-15 70.9
MS.gene42535.t1 AT1G01140 33.010 103 69 0 1 103 55 157 2.72e-15 70.9
MS.gene42535.t1 AT5G35410 33.010 103 69 0 1 103 47 149 2.90e-15 70.5
MS.gene42535.t1 AT5G35410 33.010 103 69 0 1 103 47 149 3.13e-15 70.5
MS.gene42535.t1 AT4G30960 35.417 96 61 1 8 103 67 161 3.68e-15 70.5
MS.gene42535.t1 AT3G01090 36.458 96 61 0 8 103 85 180 3.79e-15 70.5
MS.gene42535.t1 AT3G01090 36.458 96 61 0 8 103 62 157 4.10e-15 70.5
MS.gene42535.t1 AT3G01090 36.458 96 61 0 8 103 62 157 4.10e-15 70.5
MS.gene42535.t1 AT1G54960 36.264 91 58 0 13 103 121 211 6.24e-15 69.7
MS.gene42535.t1 AT1G54960 36.264 91 58 0 13 103 121 211 6.24e-15 69.7
MS.gene42535.t1 AT1G53700 41.053 95 54 1 10 102 139 233 7.17e-15 69.7
MS.gene42535.t1 AT1G63700 35.165 91 59 0 13 103 450 540 8.66e-15 69.3
MS.gene42535.t1 AT1G63700 35.165 91 59 0 13 103 450 540 8.66e-15 69.3
MS.gene42535.t1 AT2G30360 32.632 95 64 0 9 103 66 160 1.33e-14 68.9
MS.gene42535.t1 AT1G49180 31.313 99 68 0 2 100 43 141 2.50e-14 68.2
MS.gene42535.t1 AT1G49180 31.313 99 68 0 2 100 43 141 2.52e-14 67.8
MS.gene42535.t1 AT5G39440 34.314 102 65 1 4 103 56 157 2.76e-14 68.2
MS.gene42535.t1 AT1G14000 36.842 95 56 2 13 103 208 302 4.63e-14 67.4
MS.gene42535.t1 AT1G09000 35.165 91 59 0 13 103 122 212 4.86e-14 67.4
MS.gene42535.t1 AT1G09000 35.165 91 59 0 13 103 122 212 4.90e-14 67.4
MS.gene42535.t1 AT3G14370 37.895 95 57 1 10 102 133 227 5.59e-14 67.0
MS.gene42535.t1 AT3G29160 35.417 96 62 0 8 103 63 158 7.07e-14 66.6
MS.gene42535.t1 AT5G63650 34.737 95 58 1 2 96 41 131 7.16e-14 66.6
MS.gene42535.t1 AT1G51170 37.349 83 50 1 22 102 85 167 8.03e-14 66.6
MS.gene42535.t1 AT3G29160 35.417 96 62 0 8 103 63 158 8.49e-14 66.6
MS.gene42535.t1 AT3G29160 35.417 96 62 0 8 103 63 158 8.49e-14 66.6
MS.gene42535.t1 AT3G53930 32.653 98 66 0 2 99 56 153 1.10e-13 66.2
MS.gene42535.t1 AT3G53930 32.653 98 66 0 2 99 56 153 1.10e-13 66.2
MS.gene42535.t1 AT1G53570 34.066 91 60 0 13 103 264 354 1.28e-13 66.2
MS.gene42535.t1 AT1G53570 34.066 91 60 0 13 103 264 354 1.28e-13 66.2
MS.gene42535.t1 AT1G53570 34.066 91 60 0 13 103 264 354 1.30e-13 66.2
MS.gene42535.t1 AT1G53570 34.066 91 60 0 13 103 264 354 1.30e-13 66.2
MS.gene42535.t1 AT1G53570 34.066 91 60 0 13 103 264 354 1.30e-13 66.2
MS.gene42535.t1 AT1G53570 34.066 91 60 0 13 103 264 354 1.30e-13 66.2
MS.gene42535.t1 AT5G66880 34.737 95 58 1 2 96 59 149 1.42e-13 65.9
MS.gene42535.t1 AT5G66880 34.737 95 58 1 2 96 59 149 1.42e-13 65.9
MS.gene42535.t1 AT3G07980 31.132 106 67 2 4 103 54 159 1.77e-13 65.9
MS.gene42535.t1 AT3G07980 31.132 106 67 2 4 103 54 159 1.77e-13 65.9
MS.gene42535.t1 AT3G50500 34.737 95 58 1 2 96 60 150 2.15e-13 65.5
MS.gene42535.t1 AT3G50500 34.737 95 58 1 2 96 60 150 2.18e-13 65.5
MS.gene42535.t1 AT5G56580 34.783 115 71 3 2 112 105 219 2.29e-13 65.1
MS.gene42535.t1 AT4G14580 36.585 82 52 0 22 103 79 160 2.80e-13 65.1
MS.gene42535.t1 AT3G06030 34.066 91 60 0 13 103 121 211 2.97e-13 65.1
MS.gene42535.t1 AT5G58380 34.375 96 62 1 8 103 55 149 3.67e-13 64.7
MS.gene42535.t1 AT1G30270 40.580 69 41 0 35 103 4 72 4.24e-13 64.3
MS.gene42535.t1 AT3G23000 35.789 95 60 1 10 103 70 164 5.04e-13 64.3
MS.gene42535.t1 AT3G15220 31.868 91 62 0 13 103 61 151 5.05e-13 64.3
MS.gene42535.t1 AT1G48260 33.010 103 69 0 1 103 47 149 5.05e-13 64.3
MS.gene42535.t1 AT1G69220 37.113 97 60 1 8 103 263 359 8.73e-13 63.9
MS.gene42535.t1 AT1G69220 37.113 97 60 1 8 103 290 386 8.76e-13 63.9
MS.gene42535.t1 AT4G13000 35.870 92 57 1 13 102 69 160 9.84e-13 63.5
MS.gene42535.t1 AT3G45240 37.500 96 58 1 10 103 159 254 1.05e-12 63.5
MS.gene42535.t1 AT3G45240 37.500 96 58 1 10 103 159 254 1.06e-12 63.5
MS.gene42535.t1 AT3G45240 37.500 96 58 1 10 103 159 254 1.06e-12 63.5
MS.gene42535.t1 AT3G13530 31.959 97 64 1 9 103 63 159 1.22e-12 63.5
MS.gene42535.t1 AT2G37840 31.250 96 66 0 2 97 48 143 1.34e-12 63.2
MS.gene42535.t1 AT4G33950 34.737 95 58 1 2 96 58 148 1.49e-12 62.8
MS.gene42535.t1 AT4G33950 34.737 95 58 1 2 96 58 148 1.49e-12 62.8
MS.gene42535.t1 AT4G29810 33.010 103 68 1 2 103 114 216 1.54e-12 62.8
MS.gene42535.t1 AT4G29810 33.010 103 68 1 2 103 105 207 1.76e-12 62.8
MS.gene42535.t1 AT4G29810 33.010 103 68 1 2 103 114 216 1.79e-12 62.8
MS.gene42535.t1 AT3G45790 31.683 101 59 2 7 97 134 234 2.27e-12 62.4
MS.gene42535.t1 AT1G53165 31.868 91 62 0 13 103 61 151 2.48e-12 62.4
MS.gene42535.t1 AT1G53165 31.868 91 62 0 13 103 61 151 2.48e-12 62.4
MS.gene42535.t1 AT1G53165 31.868 91 62 0 13 103 61 151 2.48e-12 62.4
MS.gene42535.t1 AT5G60550 41.176 68 40 0 36 103 186 253 2.70e-12 62.4
MS.gene42535.t1 AT4G40010 31.731 104 65 2 2 103 41 140 2.72e-12 62.0
MS.gene42535.t1 AT1G32320 27.778 126 78 1 1 113 78 203 3.79e-12 61.6
MS.gene42535.t1 AT4G18950 35.106 94 58 1 13 103 203 296 4.38e-12 61.6
MS.gene42535.t1 AT4G18950 35.106 94 58 1 13 103 203 296 4.42e-12 61.6
MS.gene42535.t1 AT5G01820 34.118 85 55 1 9 93 66 149 5.60e-12 61.2
MS.gene42535.t1 AT1G73690 31.373 102 68 2 3 103 48 148 6.30e-12 61.2
MS.gene42535.t1 AT5G08590 32.632 95 60 1 2 96 41 131 7.44e-12 60.8
MS.gene42535.t1 AT3G25250 44.444 63 33 1 42 102 101 163 7.94e-12 60.8
MS.gene42535.t1 AT5G55090 36.667 90 52 3 13 97 47 136 7.96e-12 60.8
MS.gene42535.t1 AT4G26890 37.500 96 55 2 13 103 46 141 8.11e-12 60.8
MS.gene42535.t1 AT4G26070 33.333 108 67 2 1 103 98 205 8.24e-12 60.5
MS.gene42535.t1 AT5G55090 36.667 90 52 3 13 97 109 198 9.78e-12 60.8
MS.gene42535.t1 AT4G26070 33.333 108 67 2 1 103 97 204 1.03e-11 60.5
MS.gene42535.t1 AT4G26070 33.333 108 67 2 1 103 85 192 1.08e-11 60.5
MS.gene42535.t1 AT4G26070 33.333 108 67 2 1 103 98 205 1.22e-11 60.5
MS.gene42535.t1 AT4G26070 33.333 108 67 2 1 103 98 205 1.22e-11 60.5
MS.gene42535.t1 AT1G53570 33.735 83 55 0 13 95 264 346 1.42e-11 60.1
MS.gene42535.t1 AT1G10940 30.526 95 62 1 2 96 41 131 2.33e-11 59.7
MS.gene42535.t1 AT1G18040 33.333 102 66 2 3 103 49 149 3.12e-11 59.3
MS.gene42535.t1 AT2G23030 33.684 95 59 1 2 96 41 131 3.99e-11 58.9
MS.gene42535.t1 AT3G17510 32.990 97 63 1 9 103 62 158 4.14e-11 58.9
MS.gene42535.t1 AT1G50240 32.632 95 63 1 9 103 49 142 4.33e-11 58.9
MS.gene42535.t1 AT1G50240 32.632 95 63 1 9 103 49 142 4.33e-11 58.9
MS.gene42535.t1 AT1G60940 29.474 95 63 1 2 96 41 131 5.13e-11 58.5
MS.gene42535.t1 AT1G60940 29.474 95 63 1 2 96 41 131 5.13e-11 58.5
MS.gene42535.t1 AT5G66850 31.522 92 62 1 13 103 396 487 5.58e-11 58.5
MS.gene42535.t1 AT5G66850 31.522 92 62 1 13 103 396 487 5.61e-11 58.5
MS.gene42535.t1 AT5G07070 30.435 92 63 1 1 92 48 138 8.70e-11 58.2
MS.gene42535.t1 AT1G78290 32.632 95 60 1 2 96 41 131 8.80e-11 57.8
MS.gene42535.t1 AT1G78290 32.632 95 60 1 2 96 41 131 8.80e-11 57.8
MS.gene42535.t1 AT5G23580 41.333 75 44 0 23 97 81 155 9.33e-11 57.8

Find 23 sgRNAs with CRISPR-Local

Find 24 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTCTTTACTAAGGAATTT+AGG 0.215618 7.1:-16154285 MS.gene42535:CDS
ATGGAACGGCGGCTTGGACT+TGG 0.398643 7.1:-16154113 MS.gene42535:CDS
TGTGCAATCAATAAATTGTC+AGG 0.449853 7.1:+16154165 None:intergenic
ATCAAGGAACAAGGAGTCAA+TGG 0.475145 7.1:-16154132 MS.gene42535:CDS
GAGACTTGTATTCTTTACTA+AGG 0.491494 7.1:-16154293 MS.gene42535:CDS
AATATGATCCGCAAGAATGT+TGG 0.511413 7.1:-16154438 MS.gene42535:CDS
GTATTTGCATTCTCTGCATG+TGG 0.518943 7.1:-16154205 MS.gene42535:CDS
TGCTTTCTCCAACATTCTTG+CGG 0.523784 7.1:+16154430 None:intergenic
GAGTCAATGGAACGGCGGCT+TGG 0.539030 7.1:-16154119 MS.gene42535:CDS
AATTTATTGATTGCACATGA+TGG 0.544154 7.1:-16154159 MS.gene42535:CDS
CCGTGTCTATATTGCTGAAG+TGG 0.548032 7.1:-16154241 MS.gene42535:CDS
CTTGTCATGGAGTATCTCAA+TGG 0.563365 7.1:-16154318 MS.gene42535:CDS
AGGATGTCTAGATGAGGAAG+TGG 0.568105 7.1:-16154265 MS.gene42535:CDS
TGCACATGATGGTCACATCA+AGG 0.576319 7.1:-16154148 MS.gene42535:CDS
TGAGAACTTATATCTTGTCA+TGG 0.583665 7.1:-16154331 MS.gene42535:CDS
CCACTTCAGCAATATAGACA+CGG 0.586551 7.1:+16154241 None:intergenic
TGTTGGAGAAAGCATATTAG+CGG 0.604568 7.1:-16154421 MS.gene42535:CDS
CACTTCAGCAATATAGACAC+GGG 0.629377 7.1:+16154242 None:intergenic
GAATTTAGGATGTCTAGATG+AGG 0.630517 7.1:-16154271 MS.gene42535:CDS
GTCATGGAGTATCTCAATGG+TGG 0.648555 7.1:-16154315 MS.gene42535:CDS
GATGGTCACATCAAGGAACA+AGG 0.649984 7.1:-16154141 MS.gene42535:CDS
GGAACAAGGAGTCAATGGAA+CGG 0.698405 7.1:-16154127 MS.gene42535:CDS
ACAAGGAGTCAATGGAACGG+CGG 0.709943 7.1:-16154124 MS.gene42535:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTCTTTACTAAGGAATTT+AGG - chr7.1:16154251-16154270 MS.gene42535:CDS 20.0%
!! AATTTATTGATTGCACATGA+TGG - chr7.1:16154377-16154396 MS.gene42535:CDS 25.0%
GAGACTTGTATTCTTTACTA+AGG - chr7.1:16154243-16154262 MS.gene42535:CDS 30.0%
TAGAAAAATCGAACCACAAA+AGG + chr7.1:16154170-16154189 None:intergenic 30.0%
TGAGAACTTATATCTTGTCA+TGG - chr7.1:16154205-16154224 MS.gene42535:CDS 30.0%
TGTGCAATCAATAAATTGTC+AGG + chr7.1:16154374-16154393 None:intergenic 30.0%
! GAATTTAGGATGTCTAGATG+AGG - chr7.1:16154265-16154284 MS.gene42535:CDS 35.0%
! TGTTGGAGAAAGCATATTAG+CGG - chr7.1:16154115-16154134 MS.gene42535:CDS 35.0%
ATCAAGGAACAAGGAGTCAA+TGG - chr7.1:16154404-16154423 MS.gene42535:CDS 40.0%
CACTTCAGCAATATAGACAC+GGG + chr7.1:16154297-16154316 None:intergenic 40.0%
CCACTTCAGCAATATAGACA+CGG + chr7.1:16154298-16154317 None:intergenic 40.0%
GTATTTGCATTCTCTGCATG+TGG - chr7.1:16154331-16154350 MS.gene42535:CDS 40.0%
TGCTTTCTCCAACATTCTTG+CGG + chr7.1:16154109-16154128 None:intergenic 40.0%
! CTTGTCATGGAGTATCTCAA+TGG - chr7.1:16154218-16154237 MS.gene42535:CDS 40.0%
AGGATGTCTAGATGAGGAAG+TGG - chr7.1:16154271-16154290 MS.gene42535:CDS 45.0%
CCGTGTCTATATTGCTGAAG+TGG - chr7.1:16154295-16154314 MS.gene42535:CDS 45.0%
GATGGTCACATCAAGGAACA+AGG - chr7.1:16154395-16154414 MS.gene42535:CDS 45.0%
GGAACAAGGAGTCAATGGAA+CGG - chr7.1:16154409-16154428 MS.gene42535:CDS 45.0%
TGCACATGATGGTCACATCA+AGG - chr7.1:16154388-16154407 MS.gene42535:CDS 45.0%
! GTCATGGAGTATCTCAATGG+TGG - chr7.1:16154221-16154240 MS.gene42535:CDS 45.0%
! TACAGTGCGCAATCCTTTTG+TGG - chr7.1:16154154-16154173 MS.gene42535:CDS 45.0%
ACAAGGAGTCAATGGAACGG+CGG - chr7.1:16154412-16154431 MS.gene42535:CDS 50.0%
GAGTCAATGGAACGGCGGCT+TGG - chr7.1:16154417-16154436 MS.gene42535:CDS 60.0%
! ATGGAACGGCGGCTTGGACT+TGG - chr7.1:16154423-16154442 MS.gene42535:CDS 60.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 16154101 16154457 16154101 ID=MS.gene42535
chr7.1 mRNA 16154101 16154457 16154101 ID=MS.gene42535.t1;Parent=MS.gene42535
chr7.1 exon 16154101 16154457 16154101 ID=MS.gene42535.t1.exon1;Parent=MS.gene42535.t1
chr7.1 CDS 16154101 16154457 16154101 ID=cds.MS.gene42535.t1;Parent=MS.gene42535.t1
Gene Sequence

>MS.gene42535

ATGATCCGCAAGAATGTTGGAGAAAGCATATTAGCGGAACGTGATATCTTAATTACAGTGCGCAATCCTTTTGTGGTTCGATTTTTCTATTCTTTCACATGTCGTGAGAACTTATATCTTGTCATGGAGTATCTCAATGGTGGAGACTTGTATTCTTTACTAAGGAATTTAGGATGTCTAGATGAGGAAGTGGCCCGTGTCTATATTGCTGAAGTGGTGCTTGCATTAGAGTATTTGCATTCTCTGCATGTGGTTCATCGTGACTTGAAGCCTGACAATTTATTGATTGCACATGATGGTCACATCAAGGAACAAGGAGTCAATGGAACGGCGGCTTGGACTTGGATTAGCTTTTAA
Protein sequence

>MS.gene42535.t1

MIRKNVGESILAERDILITVRNPFVVRFFYSFTCRENLYLVMEYLNGGDLYSLLRNLGCLDEEVARVYIAEVVLALEYLHSLHVVHRDLKPDNLLIAHDGHIKEQGVNGTAAWTWISF