Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene42605.t1 | XP_013456108.1 | 78.4 | 162 | 35 | 0 | 1 | 162 | 1 | 162 | 1.60E-49 | 205.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene42605.t1 | Q9M2U1 | 82.7 | 75 | 13 | 0 | 55 | 129 | 56 | 130 | 1.2e-32 | 141.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene42605.t1 | A0A072UK58 | 78.4 | 162 | 35 | 0 | 1 | 162 | 1 | 162 | 1.2e-49 | 205.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene42605.t1 | TF | C2C2-Dof |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene42605.t1 | MTR_4g063780 | 98.148 | 162 | 3 | 0 | 1 | 162 | 1 | 162 | 1.88e-117 | 335 |
MS.gene42605.t1 | MTR_7g059400 | 62.500 | 160 | 57 | 2 | 1 | 157 | 1 | 160 | 1.74e-55 | 178 |
MS.gene42605.t1 | MTR_4g022370 | 55.233 | 172 | 66 | 3 | 1 | 161 | 1 | 172 | 2.03e-51 | 168 |
MS.gene42605.t1 | MTR_2g096740 | 55.056 | 178 | 44 | 8 | 1 | 157 | 1 | 163 | 6.94e-51 | 165 |
MS.gene42605.t1 | MTR_7g024670 | 59.028 | 144 | 52 | 4 | 1 | 139 | 1 | 142 | 7.90e-48 | 159 |
MS.gene42605.t1 | MTR_2g096740 | 50.000 | 178 | 38 | 6 | 1 | 157 | 1 | 148 | 6.89e-45 | 149 |
MS.gene42605.t1 | MTR_5g031440 | 87.500 | 56 | 7 | 0 | 70 | 125 | 38 | 93 | 2.20e-33 | 120 |
MS.gene42605.t1 | MTR_3g077750 | 54.867 | 113 | 44 | 3 | 48 | 160 | 37 | 142 | 3.39e-33 | 120 |
MS.gene42605.t1 | MTR_2g093220 | 80.328 | 61 | 12 | 0 | 69 | 129 | 34 | 94 | 1.57e-32 | 117 |
MS.gene42605.t1 | MTR_4g088580 | 66.667 | 81 | 23 | 1 | 76 | 156 | 56 | 132 | 1.66e-32 | 119 |
MS.gene42605.t1 | MTR_4g461080 | 83.051 | 59 | 9 | 1 | 70 | 127 | 23 | 81 | 4.82e-32 | 115 |
MS.gene42605.t1 | MTR_8g479350 | 86.792 | 53 | 7 | 0 | 75 | 127 | 68 | 120 | 5.53e-32 | 117 |
MS.gene42605.t1 | MTR_8g027295 | 57.732 | 97 | 39 | 1 | 62 | 158 | 11 | 105 | 1.13e-31 | 114 |
MS.gene42605.t1 | MTR_8g068210 | 69.620 | 79 | 20 | 2 | 74 | 152 | 31 | 105 | 2.19e-31 | 115 |
MS.gene42605.t1 | MTR_8g079060 | 54.717 | 106 | 32 | 3 | 54 | 159 | 17 | 106 | 6.07e-31 | 111 |
MS.gene42605.t1 | MTR_3g091820 | 67.089 | 79 | 18 | 2 | 56 | 134 | 28 | 98 | 7.47e-31 | 113 |
MS.gene42605.t1 | MTR_1g077600 | 60.000 | 80 | 30 | 1 | 52 | 129 | 18 | 97 | 2.28e-30 | 111 |
MS.gene42605.t1 | MTR_1g077600 | 60.000 | 80 | 30 | 1 | 52 | 129 | 18 | 97 | 2.98e-30 | 111 |
MS.gene42605.t1 | MTR_8g015840 | 66.667 | 66 | 22 | 0 | 70 | 135 | 15 | 80 | 9.34e-30 | 108 |
MS.gene42605.t1 | MTR_2g014060 | 67.606 | 71 | 22 | 1 | 57 | 126 | 6 | 76 | 1.39e-29 | 110 |
MS.gene42605.t1 | MTR_3g090430 | 63.514 | 74 | 27 | 0 | 56 | 129 | 32 | 105 | 2.26e-29 | 110 |
MS.gene42605.t1 | MTR_4g109980 | 82.692 | 52 | 9 | 0 | 74 | 125 | 39 | 90 | 3.09e-29 | 109 |
MS.gene42605.t1 | MTR_2g014170 | 88.000 | 50 | 6 | 0 | 74 | 123 | 44 | 93 | 5.56e-29 | 108 |
MS.gene42605.t1 | MTR_1g056810 | 63.636 | 77 | 27 | 1 | 77 | 153 | 14 | 89 | 9.99e-29 | 107 |
MS.gene42605.t1 | MTR_2g059540 | 84.000 | 50 | 8 | 0 | 74 | 123 | 30 | 79 | 6.93e-28 | 103 |
MS.gene42605.t1 | MTR_4g089095 | 71.186 | 59 | 15 | 1 | 75 | 133 | 50 | 106 | 1.10e-25 | 99.8 |
MS.gene42605.t1 | MTR_4g089095 | 71.186 | 59 | 15 | 1 | 75 | 133 | 16 | 72 | 1.38e-25 | 98.6 |
MS.gene42605.t1 | MTR_8g044220 | 66.102 | 59 | 20 | 0 | 71 | 129 | 114 | 172 | 2.20e-25 | 100 |
MS.gene42605.t1 | MTR_2g013370 | 66.129 | 62 | 16 | 1 | 74 | 135 | 45 | 101 | 4.08e-25 | 97.8 |
MS.gene42605.t1 | MTR_2g016030 | 64.286 | 70 | 24 | 1 | 72 | 141 | 44 | 112 | 4.70e-25 | 94.7 |
MS.gene42605.t1 | MTR_6g027450 | 63.333 | 60 | 22 | 0 | 68 | 127 | 82 | 141 | 5.62e-25 | 98.2 |
MS.gene42605.t1 | MTR_7g010950 | 49.412 | 85 | 43 | 0 | 68 | 152 | 128 | 212 | 1.00e-24 | 99.4 |
MS.gene42605.t1 | MTR_6g012450 | 66.667 | 60 | 20 | 0 | 68 | 127 | 129 | 188 | 1.14e-24 | 99.4 |
MS.gene42605.t1 | MTR_7g086780 | 59.701 | 67 | 25 | 1 | 61 | 127 | 87 | 151 | 1.15e-24 | 98.6 |
MS.gene42605.t1 | MTR_4g082060 | 58.571 | 70 | 26 | 1 | 58 | 127 | 108 | 174 | 1.86e-24 | 98.6 |
MS.gene42605.t1 | MTR_3g435480 | 62.687 | 67 | 24 | 1 | 68 | 134 | 129 | 194 | 1.99e-24 | 98.2 |
MS.gene42605.t1 | MTR_6g027460 | 61.667 | 60 | 23 | 0 | 68 | 127 | 89 | 148 | 2.60e-24 | 97.1 |
MS.gene42605.t1 | MTR_5g041420 | 43.820 | 89 | 50 | 0 | 39 | 127 | 102 | 190 | 1.76e-22 | 91.7 |
MS.gene42605.t1 | MTR_5g041530 | 69.091 | 55 | 16 | 1 | 77 | 131 | 142 | 195 | 1.54e-21 | 89.7 |
MS.gene42605.t1 | MTR_5g041380 | 48.780 | 82 | 41 | 1 | 59 | 140 | 111 | 191 | 3.01e-21 | 89.0 |
MS.gene42605.t1 | MTR_5g041400 | 48.780 | 82 | 41 | 1 | 59 | 140 | 103 | 183 | 7.35e-21 | 87.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene42605.t1 | AT2G37590 | 53.846 | 156 | 32 | 2 | 1 | 129 | 1 | 143 | 2.16e-48 | 159 |
MS.gene42605.t1 | AT3G55370 | 57.639 | 144 | 46 | 3 | 1 | 136 | 1 | 137 | 1.71e-47 | 157 |
MS.gene42605.t1 | AT3G55370 | 57.639 | 144 | 46 | 3 | 1 | 136 | 1 | 137 | 2.29e-47 | 157 |
MS.gene42605.t1 | AT5G02460 | 88.158 | 76 | 9 | 0 | 54 | 129 | 74 | 149 | 4.52e-45 | 152 |
MS.gene42605.t1 | AT3G55370 | 68.571 | 105 | 26 | 1 | 32 | 136 | 85 | 182 | 1.47e-44 | 150 |
MS.gene42605.t1 | AT2G28810 | 56.552 | 145 | 44 | 5 | 1 | 126 | 1 | 145 | 4.59e-43 | 145 |
MS.gene42605.t1 | AT1G07640 | 81.579 | 76 | 14 | 0 | 57 | 132 | 3 | 78 | 2.02e-41 | 140 |
MS.gene42605.t1 | AT1G07640 | 81.579 | 76 | 14 | 0 | 57 | 132 | 59 | 134 | 3.86e-41 | 140 |
MS.gene42605.t1 | AT1G07640 | 81.579 | 76 | 14 | 0 | 57 | 132 | 67 | 142 | 5.56e-41 | 140 |
MS.gene42605.t1 | AT2G28810 | 85.915 | 71 | 9 | 1 | 57 | 126 | 58 | 128 | 2.70e-39 | 135 |
MS.gene42605.t1 | AT5G60200 | 76.389 | 72 | 13 | 1 | 70 | 141 | 50 | 117 | 2.42e-35 | 124 |
MS.gene42605.t1 | AT1G51700 | 58.889 | 90 | 29 | 1 | 70 | 159 | 28 | 109 | 8.89e-33 | 115 |
MS.gene42605.t1 | AT5G60850 | 57.143 | 98 | 35 | 2 | 62 | 159 | 38 | 128 | 2.89e-32 | 117 |
MS.gene42605.t1 | AT3G45610 | 53.409 | 88 | 39 | 1 | 70 | 155 | 35 | 122 | 5.64e-32 | 114 |
MS.gene42605.t1 | AT4G38000 | 77.049 | 61 | 14 | 0 | 69 | 129 | 35 | 95 | 1.61e-31 | 113 |
MS.gene42605.t1 | AT5G65590 | 81.034 | 58 | 11 | 0 | 75 | 132 | 41 | 98 | 1.07e-30 | 113 |
MS.gene42605.t1 | AT3G21270 | 82.143 | 56 | 10 | 0 | 75 | 130 | 29 | 84 | 5.31e-30 | 108 |
MS.gene42605.t1 | AT4G24060 | 54.839 | 93 | 42 | 0 | 69 | 161 | 47 | 139 | 3.89e-29 | 109 |
MS.gene42605.t1 | AT1G28310 | 79.661 | 59 | 11 | 1 | 75 | 133 | 27 | 84 | 5.49e-29 | 108 |
MS.gene42605.t1 | AT1G28310 | 79.661 | 59 | 11 | 1 | 75 | 133 | 51 | 108 | 8.66e-29 | 108 |
MS.gene42605.t1 | AT2G28510 | 73.846 | 65 | 13 | 1 | 74 | 138 | 47 | 107 | 8.92e-29 | 107 |
MS.gene42605.t1 | AT3G52440 | 72.727 | 66 | 14 | 1 | 77 | 142 | 27 | 88 | 1.05e-28 | 106 |
MS.gene42605.t1 | AT3G52440 | 70.588 | 68 | 16 | 1 | 77 | 144 | 46 | 109 | 1.13e-28 | 107 |
MS.gene42605.t1 | AT5G62940 | 77.193 | 57 | 13 | 0 | 69 | 125 | 67 | 123 | 1.30e-28 | 108 |
MS.gene42605.t1 | AT5G66940 | 50.000 | 100 | 36 | 2 | 56 | 144 | 2 | 98 | 2.00e-28 | 105 |
MS.gene42605.t1 | AT3G61850 | 73.438 | 64 | 13 | 1 | 71 | 134 | 58 | 117 | 2.51e-28 | 106 |
MS.gene42605.t1 | AT3G61850 | 73.438 | 64 | 13 | 1 | 71 | 134 | 58 | 117 | 2.51e-28 | 106 |
MS.gene42605.t1 | AT3G61850 | 73.438 | 64 | 13 | 1 | 71 | 134 | 70 | 129 | 2.68e-28 | 106 |
MS.gene42605.t1 | AT3G61850 | 73.438 | 64 | 13 | 1 | 71 | 134 | 58 | 117 | 3.75e-28 | 106 |
MS.gene42605.t1 | AT3G61850 | 73.438 | 64 | 13 | 1 | 71 | 134 | 70 | 129 | 4.21e-28 | 106 |
MS.gene42605.t1 | AT1G21340 | 64.865 | 74 | 17 | 2 | 67 | 137 | 27 | 94 | 6.14e-28 | 104 |
MS.gene42605.t1 | AT4G21050 | 71.186 | 59 | 17 | 0 | 68 | 126 | 17 | 75 | 1.80e-27 | 102 |
MS.gene42605.t1 | AT2G46590 | 56.250 | 80 | 35 | 0 | 43 | 122 | 36 | 115 | 1.90e-27 | 105 |
MS.gene42605.t1 | AT2G46590 | 56.250 | 80 | 35 | 0 | 43 | 122 | 48 | 127 | 2.07e-27 | 105 |
MS.gene42605.t1 | AT3G50410 | 70.690 | 58 | 17 | 0 | 75 | 132 | 30 | 87 | 2.62e-27 | 103 |
MS.gene42605.t1 | AT4G00940 | 63.514 | 74 | 23 | 2 | 59 | 129 | 50 | 122 | 1.14e-26 | 102 |
MS.gene42605.t1 | AT4G00940 | 63.514 | 74 | 23 | 2 | 59 | 129 | 50 | 122 | 1.14e-26 | 102 |
MS.gene42605.t1 | AT4G00940 | 63.514 | 74 | 23 | 2 | 59 | 129 | 50 | 122 | 1.14e-26 | 102 |
MS.gene42605.t1 | AT1G64620 | 75.000 | 56 | 14 | 0 | 69 | 124 | 43 | 98 | 2.23e-26 | 102 |
MS.gene42605.t1 | AT2G34140 | 57.333 | 75 | 29 | 1 | 53 | 127 | 39 | 110 | 2.61e-25 | 95.9 |
MS.gene42605.t1 | AT1G47655 | 70.000 | 60 | 16 | 1 | 66 | 123 | 18 | 77 | 3.30e-25 | 96.7 |
MS.gene42605.t1 | AT1G29160 | 69.492 | 59 | 17 | 1 | 71 | 129 | 58 | 115 | 1.44e-24 | 94.0 |
MS.gene42605.t1 | AT5G39660 | 65.574 | 61 | 21 | 0 | 67 | 127 | 130 | 190 | 2.86e-24 | 97.8 |
MS.gene42605.t1 | AT5G39660 | 65.574 | 61 | 21 | 0 | 67 | 127 | 130 | 190 | 2.86e-24 | 97.8 |
MS.gene42605.t1 | AT5G39660 | 65.574 | 61 | 21 | 0 | 67 | 127 | 130 | 190 | 2.86e-24 | 97.8 |
MS.gene42605.t1 | AT1G26790 | 54.412 | 68 | 31 | 0 | 60 | 127 | 96 | 163 | 3.79e-24 | 96.7 |
MS.gene42605.t1 | AT4G21040 | 56.250 | 80 | 30 | 1 | 77 | 156 | 27 | 101 | 3.93e-24 | 94.4 |
MS.gene42605.t1 | AT5G62430 | 56.000 | 75 | 31 | 2 | 58 | 131 | 36 | 109 | 4.63e-24 | 95.5 |
MS.gene42605.t1 | AT3G47500 | 58.824 | 68 | 28 | 0 | 68 | 135 | 103 | 170 | 7.09e-24 | 96.7 |
MS.gene42605.t1 | AT1G69570 | 61.667 | 60 | 23 | 0 | 68 | 127 | 125 | 184 | 1.41e-23 | 95.5 |
MS.gene42605.t1 | AT4G21080 | 50.000 | 90 | 35 | 2 | 77 | 161 | 27 | 111 | 6.30e-23 | 91.7 |
MS.gene42605.t1 | AT4G21030 | 50.769 | 65 | 29 | 1 | 64 | 128 | 13 | 74 | 1.42e-15 | 70.9 |
Find 50 sgRNAs with CRISPR-Local
Find 58 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCAAGACATGTAGGCGTTAT+TGG | 0.207030 | 4.2:-41463349 | MS.gene42605:CDS |
TCTTGAGAGTTTGTTGAATT+AGG | 0.247926 | 4.2:+41463239 | None:intergenic |
CCATTTGCTTGTTGATGATT+TGG | 0.249048 | 4.2:+41463596 | None:intergenic |
TACTGGTGGCGGTGGTACTA+TGG | 0.292815 | 4.2:-41463522 | MS.gene42605:CDS |
TTTACCTGGTGGTGCCAATT+AGG | 0.304320 | 4.2:+41463799 | None:intergenic |
CCTTCTCATCATGAACTAAT+TGG | 0.327970 | 4.2:-41463188 | None:intergenic |
GTTATGTAGATCCTCCTAAT+TGG | 0.350822 | 4.2:-41463813 | MS.gene42605:CDS |
CTACGACACCCTCCACCAAC+TGG | 0.417773 | 4.2:+41463299 | None:intergenic |
GGACACTTTAGCGCTGGTTC+TGG | 0.424523 | 4.2:+41463443 | None:intergenic |
TGAGAAGGGATTGCACTTGA+TGG | 0.431346 | 4.2:+41463203 | None:intergenic |
GCTCGATCAGCCATGGAGCC+TGG | 0.444337 | 4.2:+41463488 | None:intergenic |
CCTCAAGTGGGAGGTAGTAC+TGG | 0.448394 | 4.2:-41463539 | MS.gene42605:CDS |
CCAAATCATCAACAAGCAAA+TGG | 0.450966 | 4.2:-41463596 | MS.gene42605:CDS |
CTTAGAAATGTTCCAGTTGG+TGG | 0.472325 | 4.2:-41463311 | MS.gene42605:CDS |
CTCGATCAGACCAGGCTCCA+TGG | 0.475078 | 4.2:-41463498 | MS.gene42605:CDS |
CCTCCCACTTGAGGTGGTAA+AGG | 0.483237 | 4.2:+41463548 | None:intergenic |
TTTAGCGCTGGTTCTGGTGG+TGG | 0.483860 | 4.2:+41463449 | None:intergenic |
AGAAATGTTCCAGTTGGTGG+AGG | 0.497986 | 4.2:-41463308 | MS.gene42605:CDS |
CCAATTAGTTCATGATGAGA+AGG | 0.516486 | 4.2:+41463188 | None:intergenic |
CACTTTAGCGCTGGTTCTGG+TGG | 0.522746 | 4.2:+41463446 | None:intergenic |
GAAGTAGCAAAATTTAGTGT+TGG | 0.523027 | 4.2:+41463406 | None:intergenic |
TCCTCCTAATTGGCACCACC+AGG | 0.528426 | 4.2:-41463803 | MS.gene42605:intron |
ACTGGTGGCGGTGGTACTAT+GGG | 0.530847 | 4.2:-41463521 | MS.gene42605:CDS |
GAGAAGGGATTGCACTTGAT+GGG | 0.532889 | 4.2:+41463204 | None:intergenic |
CAACGAGGACACTTTAGCGC+TGG | 0.540252 | 4.2:+41463437 | None:intergenic |
ACCTGGTGGTGCCAATTAGG+AGG | 0.541280 | 4.2:+41463802 | None:intergenic |
GGAGGTAGTACTGGTGGCGG+TGG | 0.560481 | 4.2:-41463530 | MS.gene42605:CDS |
CAATTAGTTCATGATGAGAA+GGG | 0.573984 | 4.2:+41463189 | None:intergenic |
TCCACCTTTACCACCTCAAG+TGG | 0.577272 | 4.2:-41463552 | MS.gene42605:CDS |
ACTATGGGCTCGATCAGACC+AGG | 0.580839 | 4.2:-41463506 | MS.gene42605:CDS |
CCCACTTGAGGTGGTAAAGG+TGG | 0.581750 | 4.2:+41463551 | None:intergenic |
GAAATGTTCCAGTTGGTGGA+GGG | 0.594932 | 4.2:-41463307 | MS.gene42605:CDS |
GCACTTAGAAATGTTCCAGT+TGG | 0.600640 | 4.2:-41463314 | MS.gene42605:CDS |
AGAAGGGATTGCACTTGATG+GGG | 0.604506 | 4.2:+41463205 | None:intergenic |
GTAGGCGTTATTGGACAAGA+GGG | 0.605161 | 4.2:-41463340 | MS.gene42605:CDS |
GTCACTTCTGCAAGACATGT+AGG | 0.611130 | 4.2:-41463358 | MS.gene42605:CDS |
TGTAGGCGTTATTGGACAAG+AGG | 0.616737 | 4.2:-41463341 | MS.gene42605:CDS |
TAAACGAGCTCGATCAGCCA+TGG | 0.633447 | 4.2:+41463481 | None:intergenic |
CATGTCTTGCAGAAGTGACG+AGG | 0.635723 | 4.2:+41463362 | None:intergenic |
GTGGGAGGTAGTACTGGTGG+CGG | 0.638124 | 4.2:-41463533 | MS.gene42605:CDS |
CCACCTTTACCACCTCAAGT+GGG | 0.662217 | 4.2:-41463551 | MS.gene42605:CDS |
CAAGTGGGAGGTAGTACTGG+TGG | 0.664836 | 4.2:-41463536 | MS.gene42605:CDS |
GTACTACCTCCCACTTGAGG+TGG | 0.666584 | 4.2:+41463542 | None:intergenic |
TAGGCGTTATTGGACAAGAG+GGG | 0.675252 | 4.2:-41463339 | MS.gene42605:CDS |
AGGCGTTATTGGACAAGAGG+GGG | 0.675862 | 4.2:-41463338 | MS.gene42605:CDS |
CCAGTACTACCTCCCACTTG+AGG | 0.681370 | 4.2:+41463539 | None:intergenic |
CCTTTACCACCTCAAGTGGG+AGG | 0.700568 | 4.2:-41463548 | MS.gene42605:CDS |
TTGAATAGAAGAGAAAACCA+TGG | 0.707467 | 4.2:+41463837 | None:intergenic |
AGAAGTGACGAGGTTGAGTG+AGG | 0.724186 | 4.2:+41463372 | None:intergenic |
GTGTTGGTTGAATCGCAACG+AGG | 0.733913 | 4.2:+41463422 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTTAAAAAAATTATTGTGA+TGG | + | chr4.2:41463365-41463384 | None:intergenic | 10.0% |
!! | ATGGAAAGAAATTAAAAAAA+GGG | + | chr4.2:41463389-41463408 | None:intergenic | 15.0% |
!! | ATGAAAATTAAAACTTTACC+TGG | + | chr4.2:41463242-41463261 | None:intergenic | 20.0% |
!! | GATGGAAAGAAATTAAAAAA+AGG | + | chr4.2:41463390-41463409 | None:intergenic | 20.0% |
!!! | TTCACTTTCTTTTTTGAATT+TGG | + | chr4.2:41463271-41463290 | None:intergenic | 20.0% |
! | AAAATTAAAACTTTACCTGG+TGG | + | chr4.2:41463239-41463258 | None:intergenic | 25.0% |
! | ATATTCAAGAAGATGAAGTA+AGG | + | chr4.2:41463329-41463348 | None:intergenic | 25.0% |
!! | TTGAATTAGGAGATTTTGAA+CGG | + | chr4.2:41463775-41463794 | None:intergenic | 25.0% |
CAATTAGTTCATGATGAGAA+GGG | + | chr4.2:41463838-41463857 | None:intergenic | 30.0% | |
GAAGTAGCAAAATTTAGTGT+TGG | + | chr4.2:41463621-41463640 | None:intergenic | 30.0% | |
! | ATGGTTTTCTCTTCTATTCA+AGG | - | chr4.2:41463189-41463208 | MS.gene42605:CDS | 30.0% |
!! | TCTTGAGAGTTTGTTGAATT+AGG | + | chr4.2:41463788-41463807 | None:intergenic | 30.0% |
CCAAATCATCAACAAGCAAA+TGG | - | chr4.2:41463428-41463447 | MS.gene42605:CDS | 35.0% | |
GTTATGTAGATCCTCCTAAT+TGG | - | chr4.2:41463211-41463230 | MS.gene42605:CDS | 35.0% | |
TTGCTGCAGGTTAAAATAGA+TGG | + | chr4.2:41463408-41463427 | None:intergenic | 35.0% | |
!! | CCATTTGCTTGTTGATGATT+TGG | + | chr4.2:41463431-41463450 | None:intergenic | 35.0% |
CTTAGAAATGTTCCAGTTGG+TGG | - | chr4.2:41463713-41463732 | MS.gene42605:intron | 40.0% | |
GCACTTAGAAATGTTCCAGT+TGG | - | chr4.2:41463710-41463729 | MS.gene42605:intron | 40.0% | |
AGAAGGGATTGCACTTGATG+GGG | + | chr4.2:41463822-41463841 | None:intergenic | 45.0% | |
GAGAAGGGATTGCACTTGAT+GGG | + | chr4.2:41463823-41463842 | None:intergenic | 45.0% | |
GCAAGACATGTAGGCGTTAT+TGG | - | chr4.2:41463675-41463694 | MS.gene42605:intron | 45.0% | |
GTAGGCGTTATTGGACAAGA+GGG | - | chr4.2:41463684-41463703 | MS.gene42605:intron | 45.0% | |
GTCACTTCTGCAAGACATGT+AGG | - | chr4.2:41463666-41463685 | MS.gene42605:intron | 45.0% | |
TAGGCGTTATTGGACAAGAG+GGG | - | chr4.2:41463685-41463704 | MS.gene42605:intron | 45.0% | |
TGAGAAGGGATTGCACTTGA+TGG | + | chr4.2:41463824-41463843 | None:intergenic | 45.0% | |
TGTAGGCGTTATTGGACAAG+AGG | - | chr4.2:41463683-41463702 | MS.gene42605:intron | 45.0% | |
! | TTTACCTGGTGGTGCCAATT+AGG | + | chr4.2:41463228-41463247 | None:intergenic | 45.0% |
!! | AGAAATGTTCCAGTTGGTGG+AGG | - | chr4.2:41463716-41463735 | MS.gene42605:intron | 45.0% |
!! | GAAATGTTCCAGTTGGTGGA+GGG | - | chr4.2:41463717-41463736 | MS.gene42605:intron | 45.0% |
!! | GTTGATGATTTGGTTGCTGC+AGG | + | chr4.2:41463421-41463440 | None:intergenic | 45.0% |
AGAAGTGACGAGGTTGAGTG+AGG | + | chr4.2:41463655-41463674 | None:intergenic | 50.0% | |
AGGCGTTATTGGACAAGAGG+GGG | - | chr4.2:41463686-41463705 | MS.gene42605:intron | 50.0% | |
CATGTCTTGCAGAAGTGACG+AGG | + | chr4.2:41463665-41463684 | None:intergenic | 50.0% | |
CCACCTTTACCACCTCAAGT+GGG | - | chr4.2:41463473-41463492 | MS.gene42605:CDS | 50.0% | |
TAAACGAGCTCGATCAGCCA+TGG | + | chr4.2:41463546-41463565 | None:intergenic | 50.0% | |
TCCACCTTTACCACCTCAAG+TGG | - | chr4.2:41463472-41463491 | MS.gene42605:CDS | 50.0% | |
!! | GTGTTGGTTGAATCGCAACG+AGG | + | chr4.2:41463605-41463624 | None:intergenic | 50.0% |
ACTATGGGCTCGATCAGACC+AGG | - | chr4.2:41463518-41463537 | MS.gene42605:CDS | 55.0% | |
CAACGAGGACACTTTAGCGC+TGG | + | chr4.2:41463590-41463609 | None:intergenic | 55.0% | |
CCAGTACTACCTCCCACTTG+AGG | + | chr4.2:41463488-41463507 | None:intergenic | 55.0% | |
CCCACTTGAGGTGGTAAAGG+TGG | + | chr4.2:41463476-41463495 | None:intergenic | 55.0% | |
CCTCAAGTGGGAGGTAGTAC+TGG | - | chr4.2:41463485-41463504 | MS.gene42605:CDS | 55.0% | |
CCTCCCACTTGAGGTGGTAA+AGG | + | chr4.2:41463479-41463498 | None:intergenic | 55.0% | |
CCTTTACCACCTCAAGTGGG+AGG | - | chr4.2:41463476-41463495 | MS.gene42605:CDS | 55.0% | |
GTACTACCTCCCACTTGAGG+TGG | + | chr4.2:41463485-41463504 | None:intergenic | 55.0% | |
TCCTCCTAATTGGCACCACC+AGG | - | chr4.2:41463221-41463240 | MS.gene42605:CDS | 55.0% | |
! | ACCTGGTGGTGCCAATTAGG+AGG | + | chr4.2:41463225-41463244 | None:intergenic | 55.0% |
! | CAAGTGGGAGGTAGTACTGG+TGG | - | chr4.2:41463488-41463507 | MS.gene42605:CDS | 55.0% |
!! | ACTGGTGGCGGTGGTACTAT+GGG | - | chr4.2:41463503-41463522 | MS.gene42605:CDS | 55.0% |
!! | CACTTTAGCGCTGGTTCTGG+TGG | + | chr4.2:41463581-41463600 | None:intergenic | 55.0% |
!! | GGACACTTTAGCGCTGGTTC+TGG | + | chr4.2:41463584-41463603 | None:intergenic | 55.0% |
!! | TACTGGTGGCGGTGGTACTA+TGG | - | chr4.2:41463502-41463521 | MS.gene42605:CDS | 55.0% |
!! | TTTAGCGCTGGTTCTGGTGG+TGG | + | chr4.2:41463578-41463597 | None:intergenic | 55.0% |
CTACGACACCCTCCACCAAC+TGG | + | chr4.2:41463728-41463747 | None:intergenic | 60.0% | |
CTCGATCAGACCAGGCTCCA+TGG | - | chr4.2:41463526-41463545 | MS.gene42605:CDS | 60.0% | |
!! | GTGGGAGGTAGTACTGGTGG+CGG | - | chr4.2:41463491-41463510 | MS.gene42605:CDS | 60.0% |
GCTCGATCAGCCATGGAGCC+TGG | + | chr4.2:41463539-41463558 | None:intergenic | 65.0% | |
!! | GGAGGTAGTACTGGTGGCGG+TGG | - | chr4.2:41463494-41463513 | MS.gene42605:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 41463189 | 41463857 | 41463189 | ID=MS.gene42605 |
chr4.2 | mRNA | 41463189 | 41463857 | 41463189 | ID=MS.gene42605.t1;Parent=MS.gene42605 |
chr4.2 | exon | 41463804 | 41463857 | 41463804 | ID=MS.gene42605.t1.exon1;Parent=MS.gene42605.t1 |
chr4.2 | CDS | 41463804 | 41463857 | 41463804 | ID=cds.MS.gene42605.t1;Parent=MS.gene42605.t1 |
chr4.2 | exon | 41463189 | 41463621 | 41463189 | ID=MS.gene42605.t1.exon2;Parent=MS.gene42605.t1 |
chr4.2 | CDS | 41463189 | 41463621 | 41463189 | ID=cds.MS.gene42605.t1;Parent=MS.gene42605.t1 |
Gene Sequence |
Protein sequence |