AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene42609

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene42609.t1 MTR_3g106060 91.497 294 24 1 1 293 1 294 0.0 561
MS.gene42609.t1 MTR_1g013760 58.446 296 93 8 1 286 1 276 1.99e-105 308
MS.gene42609.t1 MTR_2g105060 44.043 277 115 6 29 286 58 313 2.20e-67 213
MS.gene42609.t1 MTR_4g007060 41.875 320 135 10 6 286 7 314 6.92e-61 196
MS.gene42609.t1 MTR_4g007060 45.290 276 120 8 30 286 17 280 1.44e-60 194
MS.gene42609.t1 MTR_2g105060 42.248 258 109 6 48 286 2 238 1.16e-58 188
MS.gene42609.t1 MTR_1g013790 41.899 179 69 4 123 290 86 240 2.20e-37 133
MS.gene42609.t1 MTR_4g007060 41.089 202 84 4 6 178 7 202 8.11e-34 124
MS.gene42609.t1 MTR_3g053330 30.315 254 116 6 1 196 59 309 1.38e-27 111
MS.gene42609.t1 MTR_4g094412 47.748 111 48 3 85 195 191 291 6.19e-27 109
MS.gene42609.t1 MTR_4g094412 47.748 111 48 3 85 195 200 300 7.21e-27 109
MS.gene42609.t1 MTR_7g110720 30.233 301 141 11 29 285 99 374 3.69e-26 106
MS.gene42609.t1 MTR_7g110720 35.266 207 84 6 123 285 201 401 3.73e-25 104
MS.gene42609.t1 MTR_4g107970 55.000 80 34 1 117 196 159 236 5.04e-25 104
MS.gene42609.t1 MTR_2g023930 58.750 80 28 2 116 195 288 362 6.87e-25 104
MS.gene42609.t1 MTR_4g107970 55.000 80 34 1 117 196 236 313 7.53e-25 104
MS.gene42609.t1 MTR_4g132430 32.512 203 98 4 30 195 118 318 1.32e-24 103
MS.gene42609.t1 MTR_4g132430 56.579 76 31 1 120 195 111 184 2.82e-24 100
MS.gene42609.t1 MTR_2g088000 55.556 81 31 2 116 196 332 407 1.11e-23 100
MS.gene42609.t1 MTR_7g009730 64.407 59 21 0 137 195 218 276 1.78e-23 100
MS.gene42609.t1 MTR_2g045360 46.465 99 48 2 120 215 195 291 1.34e-22 97.1
MS.gene42609.t1 MTR_5g094430 62.712 59 21 1 137 195 229 286 1.13e-21 94.4
MS.gene42609.t1 MTR_5g094430 48.387 62 30 2 139 200 67 126 8.41e-11 62.4
MS.gene42609.t1 MTR_5g016610 39.850 133 59 4 70 196 140 257 1.22e-21 92.0
MS.gene42609.t1 MTR_5g094430 62.712 59 21 1 137 195 251 308 1.31e-21 94.4
MS.gene42609.t1 MTR_5g094430 48.387 62 30 2 139 200 89 148 8.00e-11 62.8
MS.gene42609.t1 MTR_5g094430 62.712 59 21 1 137 195 363 420 1.59e-21 94.7
MS.gene42609.t1 MTR_5g094430 48.387 62 30 2 139 200 201 260 6.94e-11 63.2
MS.gene42609.t1 MTR_3g056100 62.712 59 21 1 137 195 257 314 2.30e-21 93.6
MS.gene42609.t1 MTR_3g056100 44.286 70 37 2 139 208 100 167 1.17e-11 65.1
MS.gene42609.t1 MTR_3g056100 62.712 59 21 1 137 195 270 327 2.60e-21 93.6
MS.gene42609.t1 MTR_3g056100 44.286 70 37 2 139 208 100 167 1.28e-11 65.1
MS.gene42609.t1 MTR_4g049760 51.351 74 36 0 122 195 274 347 2.64e-21 94.0
MS.gene42609.t1 MTR_3g056100 62.712 59 21 1 137 195 401 458 2.69e-21 94.0
MS.gene42609.t1 MTR_3g056100 44.286 70 37 2 139 208 244 311 1.39e-11 65.1
MS.gene42609.t1 MTR_3g056100 62.712 59 21 1 137 195 414 471 2.81e-21 94.0
MS.gene42609.t1 MTR_3g056100 44.286 70 37 2 139 208 244 311 1.45e-11 65.1
MS.gene42609.t1 MTR_5g097490 53.333 75 32 2 122 196 238 309 8.51e-21 91.7
MS.gene42609.t1 MTR_5g042920 51.163 86 36 4 110 195 297 376 9.27e-21 92.0
MS.gene42609.t1 MTR_5g042920 56.140 57 23 2 139 195 152 206 4.63e-14 72.4
MS.gene42609.t1 MTR_4g082580 42.478 113 56 5 111 220 256 362 3.13e-20 90.1
MS.gene42609.t1 MTR_4g082580 41.860 86 43 3 125 210 137 215 1.23e-11 65.1
MS.gene42609.t1 MTR_4g094908 58.621 58 24 0 139 196 267 324 5.03e-20 89.0
MS.gene42609.t1 MTR_4g049790 49.333 75 38 0 121 195 295 369 6.45e-20 90.1
MS.gene42609.t1 MTR_5g091390 56.667 60 25 1 136 195 155 213 8.54e-20 87.8
MS.gene42609.t1 MTR_1g086790 55.882 68 27 2 136 203 156 220 1.06e-19 87.8
MS.gene42609.t1 MTR_3g104750 55.932 59 25 1 137 195 103 160 1.08e-19 84.3
MS.gene42609.t1 MTR_7g109800 44.792 96 48 3 112 207 121 211 1.27e-19 87.0
MS.gene42609.t1 MTR_1g070455 56.897 58 25 0 139 196 294 351 2.12e-19 87.4
MS.gene42609.t1 MTR_7g011820 54.795 73 30 3 123 195 397 466 3.19e-19 87.8
MS.gene42609.t1 MTR_7g011820 42.857 91 49 3 139 229 229 316 3.23e-14 73.2
MS.gene42609.t1 MTR_3g031220 51.316 76 34 3 120 195 349 421 3.85e-19 87.4
MS.gene42609.t1 MTR_3g031220 42.169 83 37 3 113 195 182 253 8.40e-14 71.6
MS.gene42609.t1 MTR_4g094588 55.932 59 25 1 137 195 177 234 5.05e-19 85.9
MS.gene42609.t1 MTR_7g062220 35.088 171 90 6 72 224 41 208 5.34e-19 85.9
MS.gene42609.t1 MTR_1g009613 56.140 57 25 0 139 195 263 319 6.46e-19 85.9
MS.gene42609.t1 MTR_5g074400 51.316 76 34 3 120 195 404 476 8.98e-19 86.7
MS.gene42609.t1 MTR_5g074400 52.632 57 25 2 139 195 244 298 4.92e-14 72.4
MS.gene42609.t1 MTR_1g015140 54.237 59 26 1 137 195 101 158 1.15e-18 81.6
MS.gene42609.t1 MTR_4g127040 42.000 100 54 2 102 197 205 304 1.42e-18 84.3
MS.gene42609.t1 MTR_5g043880 55.000 60 26 1 136 195 122 180 2.07e-18 83.6
MS.gene42609.t1 MTR_2g033820 44.565 92 43 3 136 220 201 291 2.14e-18 84.7
MS.gene42609.t1 MTR_1g077780 48.718 78 37 3 118 195 44 118 2.31e-18 80.1
MS.gene42609.t1 MTR_7g071120 55.932 59 25 1 137 195 323 380 3.18e-18 84.7
MS.gene42609.t1 MTR_7g071120 47.143 70 29 3 132 195 154 221 1.07e-12 68.6
MS.gene42609.t1 MTR_7g100510 55.932 59 25 1 137 195 360 417 3.66e-18 84.3
MS.gene42609.t1 MTR_7g100510 49.351 77 35 3 123 199 176 248 5.38e-16 78.2
MS.gene42609.t1 MTR_4g013260 55.932 59 25 1 137 195 335 392 5.17e-18 84.3
MS.gene42609.t1 MTR_4g013260 50.000 58 28 1 138 195 184 240 5.58e-14 72.4
MS.gene42609.t1 MTR_3g009470 57.627 59 24 1 137 195 494 551 5.17e-18 84.3
MS.gene42609.t1 MTR_3g009470 53.448 58 25 2 138 195 280 335 1.93e-12 67.8
MS.gene42609.t1 MTR_7g080020 42.000 100 52 3 99 195 453 549 8.47e-18 84.0
MS.gene42609.t1 MTR_7g080020 52.542 59 26 2 138 196 280 336 5.62e-12 66.6
MS.gene42609.t1 MTR_8g087000 53.448 58 27 0 139 196 78 135 9.23e-18 80.9
MS.gene42609.t1 MTR_8g087000 53.448 58 27 0 139 196 77 134 1.13e-17 80.9
MS.gene42609.t1 MTR_7g080000 48.684 76 36 2 120 195 416 488 1.14e-17 83.6
MS.gene42609.t1 MTR_7g080000 50.000 60 28 2 137 196 233 290 1.93e-11 64.7
MS.gene42609.t1 MTR_7g028415 54.237 59 26 1 137 195 92 149 2.73e-17 78.2
MS.gene42609.t1 MTR_7g028710 54.237 59 26 1 137 195 92 149 2.73e-17 78.2
MS.gene42609.t1 MTR_8g092140 51.667 60 28 1 137 196 159 217 5.61e-17 78.6
MS.gene42609.t1 MTR_3g095080 48.718 78 35 3 137 213 143 216 7.57e-17 78.2
MS.gene42609.t1 MTR_3g095080 51.667 60 28 1 137 196 167 225 8.64e-17 78.2
MS.gene42609.t1 MTR_8g096730 50.877 57 27 1 139 195 71 126 9.32e-17 75.9
MS.gene42609.t1 MTR_8g092010 52.542 59 27 1 137 195 107 164 1.23e-16 76.6
MS.gene42609.t1 MTR_4g122530 51.667 60 28 1 136 195 206 264 2.03e-16 79.3
MS.gene42609.t1 MTR_2g083870 47.143 70 37 0 139 208 81 150 2.89e-16 77.0
MS.gene42609.t1 MTR_7g079010 55.932 59 25 1 137 195 140 197 3.86e-16 75.9
MS.gene42609.t1 MTR_2g016770 43.056 72 41 0 139 210 36 107 4.05e-16 75.9
MS.gene42609.t1 MTR_2g016770 43.056 72 41 0 139 210 28 99 4.28e-16 75.9
MS.gene42609.t1 MTR_8g007270 51.667 60 28 1 137 196 153 211 5.79e-16 75.9
MS.gene42609.t1 MTR_3g095040 54.237 59 26 1 137 195 117 174 6.00e-16 75.1
MS.gene42609.t1 MTR_0117s0040 49.123 57 29 0 139 195 75 131 1.06e-15 75.5
MS.gene42609.t1 MTR_2g032030 45.205 73 40 0 139 211 268 340 1.30e-15 77.0
MS.gene42609.t1 MTR_2g032030 45.205 73 40 0 139 211 268 340 2.31e-15 76.3
MS.gene42609.t1 MTR_3g108960 49.123 57 29 0 139 195 315 371 3.44e-15 75.5
MS.gene42609.t1 MTR_7g109600 50.877 57 28 0 139 195 54 110 3.83e-15 73.9
MS.gene42609.t1 MTR_4g130900 50.877 57 27 1 139 195 360 415 3.88e-15 75.9
MS.gene42609.t1 MTR_2g024350 49.153 59 30 0 138 196 8 66 4.24e-15 73.2
MS.gene42609.t1 MTR_8g028565 49.123 57 29 0 139 195 156 212 5.88e-15 74.3
MS.gene42609.t1 MTR_2g024380 50.847 59 29 0 138 196 251 309 6.47e-15 75.1
MS.gene42609.t1 MTR_8g098945 39.326 89 50 1 139 227 130 214 9.99e-15 73.2
MS.gene42609.t1 MTR_3g031220 42.169 83 37 3 113 195 182 253 4.81e-14 72.0
MS.gene42609.t1 MTR_5g074200 40.230 87 46 4 139 225 221 301 5.64e-14 71.6
MS.gene42609.t1 MTR_4g047580 39.189 74 45 0 121 194 264 337 6.60e-14 72.0
MS.gene42609.t1 MTR_7g079040 47.368 57 30 0 139 195 155 211 9.41e-14 70.9
MS.gene42609.t1 MTR_1g099600 36.842 95 57 1 122 216 172 263 9.95e-14 70.5
MS.gene42609.t1 MTR_7g117200 38.235 102 51 3 108 199 82 181 4.54e-13 68.9
MS.gene42609.t1 MTR_1g078260 42.667 75 39 3 123 196 234 305 4.62e-13 69.3
MS.gene42609.t1 MTR_3g009470 53.448 58 25 2 138 195 280 335 2.14e-12 67.4
MS.gene42609.t1 MTR_8g099350 50.000 58 27 1 138 193 132 189 5.24e-12 65.9
MS.gene42609.t1 MTR_3g090860 49.153 59 28 1 137 193 132 190 5.55e-12 65.9
MS.gene42609.t1 MTR_5g097500 44.615 65 35 1 131 195 223 286 7.27e-12 65.1
MS.gene42609.t1 MTR_2g075750 38.202 89 44 3 125 207 11 94 7.57e-12 63.2
MS.gene42609.t1 MTR_5g067680 44.615 65 34 1 131 193 195 259 1.17e-11 64.7
MS.gene42609.t1 MTR_2g075610 43.077 65 35 1 132 194 23 87 1.36e-11 62.8
MS.gene42609.t1 MTR_8g027860 36.170 94 53 2 107 193 100 193 1.86e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene42609.t1 AT1G80840 45.455 297 134 10 6 285 9 294 2.28e-70 220
MS.gene42609.t1 AT2G25000 44.151 265 99 7 29 286 1 223 4.11e-61 194
MS.gene42609.t1 AT2G25000 44.151 265 99 7 29 286 1 223 4.11e-61 194
MS.gene42609.t1 AT2G25000 44.151 265 99 7 29 286 23 245 1.37e-60 193
MS.gene42609.t1 AT2G25000 44.151 265 99 7 29 286 44 266 1.84e-60 193
MS.gene42609.t1 AT4G31800 38.994 318 138 6 6 286 7 305 4.24e-59 191
MS.gene42609.t1 AT4G31800 50.898 167 63 1 120 286 93 240 4.70e-51 168
MS.gene42609.t1 AT4G31800 40.097 207 87 5 6 175 7 213 2.38e-33 122
MS.gene42609.t1 AT1G62300 33.491 212 93 5 30 195 160 369 1.85e-27 112
MS.gene42609.t1 AT1G68150 45.528 123 60 4 120 240 219 336 1.74e-26 107
MS.gene42609.t1 AT4G22070 57.895 76 30 1 120 195 281 354 4.65e-25 104
MS.gene42609.t1 AT4G22070 57.895 76 30 1 120 195 281 354 4.65e-25 104
MS.gene42609.t1 AT4G22070 57.895 76 30 1 120 195 281 354 4.65e-25 104
MS.gene42609.t1 AT4G22070 57.895 76 30 1 120 195 281 354 4.65e-25 104
MS.gene42609.t1 AT4G04450 56.579 76 31 1 120 195 182 255 1.29e-24 102
MS.gene42609.t1 AT4G01720 33.503 197 92 5 33 195 105 296 2.96e-24 102
MS.gene42609.t1 AT4G04450 56.579 76 31 1 120 195 276 349 3.19e-24 102
MS.gene42609.t1 AT5G15130 47.959 98 46 2 99 196 151 243 6.69e-24 101
MS.gene42609.t1 AT5G15130 47.959 98 46 2 99 196 193 285 7.41e-24 101
MS.gene42609.t1 AT1G18860 62.712 59 22 0 137 195 238 296 4.81e-22 96.3
MS.gene42609.t1 AT5G26170 56.667 60 25 1 137 196 112 170 1.53e-21 89.7
MS.gene42609.t1 AT1G13960 53.012 83 33 4 113 195 236 312 1.71e-21 93.2
MS.gene42609.t1 AT1G13960 56.140 57 23 2 139 195 77 131 1.17e-14 73.9
MS.gene42609.t1 AT1G13960 53.012 83 33 4 113 195 389 465 3.66e-21 93.6
MS.gene42609.t1 AT1G13960 56.140 57 23 2 139 195 230 284 1.57e-14 73.9
MS.gene42609.t1 AT5G07100 42.742 124 57 7 77 195 83 197 4.14e-21 89.7
MS.gene42609.t1 AT5G07100 47.541 61 31 1 139 199 25 84 1.10e-12 66.2
MS.gene42609.t1 AT5G07100 42.742 124 57 7 77 195 83 197 4.14e-21 89.7
MS.gene42609.t1 AT5G07100 47.541 61 31 1 139 199 25 84 1.10e-12 66.2
MS.gene42609.t1 AT5G07100 42.742 124 57 7 77 195 83 197 4.14e-21 89.7
MS.gene42609.t1 AT5G07100 47.541 61 31 1 139 199 25 84 1.10e-12 66.2
MS.gene42609.t1 AT5G07100 42.742 124 57 7 77 195 83 197 4.14e-21 89.7
MS.gene42609.t1 AT5G07100 47.541 61 31 1 139 199 25 84 1.10e-12 66.2
MS.gene42609.t1 AT5G07100 42.742 124 57 7 77 195 176 290 1.38e-20 90.1
MS.gene42609.t1 AT5G07100 34.351 131 79 4 72 199 51 177 1.26e-12 67.4
MS.gene42609.t1 AT4G26640 61.017 59 22 1 137 195 204 261 1.49e-20 90.9
MS.gene42609.t1 AT4G26640 45.070 71 37 2 130 200 27 95 3.61e-11 63.5
MS.gene42609.t1 AT4G26640 61.017 59 22 1 137 195 204 261 1.49e-20 90.9
MS.gene42609.t1 AT4G26640 45.070 71 37 2 130 200 27 95 3.61e-11 63.5
MS.gene42609.t1 AT4G26640 61.017 59 22 1 137 195 204 261 1.49e-20 90.9
MS.gene42609.t1 AT4G26640 45.070 71 37 2 130 200 27 95 3.61e-11 63.5
MS.gene42609.t1 AT4G26640 61.017 59 22 1 137 195 204 261 1.49e-20 90.9
MS.gene42609.t1 AT4G26640 45.070 71 37 2 130 200 27 95 3.61e-11 63.5
MS.gene42609.t1 AT4G26640 61.017 59 22 1 137 195 308 365 2.38e-20 91.3
MS.gene42609.t1 AT4G26640 45.070 71 37 2 130 200 131 199 3.97e-11 63.5
MS.gene42609.t1 AT4G26640 61.017 59 22 1 137 195 340 397 2.39e-20 91.3
MS.gene42609.t1 AT4G26640 45.070 71 37 2 130 200 163 231 3.40e-11 63.9
MS.gene42609.t1 AT4G26640 61.017 59 22 1 137 195 380 437 2.54e-20 91.3
MS.gene42609.t1 AT4G26640 45.070 71 37 2 130 200 203 271 3.57e-11 63.9
MS.gene42609.t1 AT2G03340 51.807 83 34 4 113 195 395 471 3.95e-20 90.5
MS.gene42609.t1 AT2G03340 49.275 69 33 2 127 195 239 305 6.31e-15 75.1
MS.gene42609.t1 AT2G04880 61.017 59 22 1 137 195 282 339 4.04e-20 90.5
MS.gene42609.t1 AT2G04880 61.017 59 22 1 137 195 306 363 4.36e-20 90.5
MS.gene42609.t1 AT1G29860 56.667 60 25 1 136 195 134 192 4.85e-20 88.2
MS.gene42609.t1 AT5G49520 51.389 72 30 2 124 195 211 277 6.21e-20 89.4
MS.gene42609.t1 AT5G46350 39.695 131 61 6 119 249 169 281 1.30e-19 87.4
MS.gene42609.t1 AT2G23320 55.172 58 26 0 139 196 241 298 2.32e-19 86.7
MS.gene42609.t1 AT2G47260 48.810 84 40 2 112 195 150 230 2.63e-19 87.0
MS.gene42609.t1 AT5G56270 52.632 76 33 3 120 195 471 543 2.84e-19 88.2
MS.gene42609.t1 AT5G56270 47.761 67 33 2 129 195 264 328 2.32e-12 67.8
MS.gene42609.t1 AT4G31550 48.571 70 36 0 139 208 246 315 3.32e-19 86.3
MS.gene42609.t1 AT2G30590 57.895 57 24 0 139 195 314 370 3.32e-19 87.0
MS.gene42609.t1 AT4G18170 46.753 77 35 3 119 195 158 228 3.35e-19 86.3
MS.gene42609.t1 AT4G31550 48.571 70 36 0 139 208 247 316 3.39e-19 86.3
MS.gene42609.t1 AT5G28650 58.621 58 24 0 139 196 263 320 3.80e-19 86.3
MS.gene42609.t1 AT1G69810 42.697 89 48 2 108 195 117 203 6.34e-19 85.9
MS.gene42609.t1 AT1G69810 42.697 89 48 2 108 195 175 261 6.96e-19 86.3
MS.gene42609.t1 AT1G69310 48.052 77 34 3 119 195 133 203 7.34e-19 84.7
MS.gene42609.t1 AT1G69310 48.052 77 34 3 119 195 133 203 7.34e-19 84.7
MS.gene42609.t1 AT1G69310 48.052 77 34 3 119 195 133 203 7.34e-19 84.7
MS.gene42609.t1 AT1G64000 55.932 59 25 1 137 195 113 170 7.94e-19 82.8
MS.gene42609.t1 AT3G01970 54.688 64 28 1 137 200 64 126 7.99e-19 81.6
MS.gene42609.t1 AT2G38470 57.627 59 24 1 137 195 361 418 1.33e-18 86.3
MS.gene42609.t1 AT2G38470 55.172 58 24 2 138 195 184 239 1.03e-14 74.7
MS.gene42609.t1 AT3G04670 55.172 58 26 0 139 196 263 320 1.58e-18 84.7
MS.gene42609.t1 AT5G41570 47.436 78 38 2 118 195 80 154 3.57e-18 80.9
MS.gene42609.t1 AT4G24240 53.448 58 27 0 139 196 282 339 3.69e-18 84.0
MS.gene42609.t1 AT3G01080 49.398 83 36 4 113 195 286 362 4.14e-18 84.3
MS.gene42609.t1 AT3G01080 39.080 87 51 2 139 225 168 252 1.07e-11 65.5
MS.gene42609.t1 AT3G62340 55.738 61 26 1 135 195 115 174 4.29e-18 82.8
MS.gene42609.t1 AT5G13080 54.237 59 26 1 137 195 66 123 4.47e-18 79.7
MS.gene42609.t1 AT3G01080 49.398 83 36 4 113 195 324 400 4.70e-18 84.3
MS.gene42609.t1 AT3G01080 39.080 87 51 2 139 225 206 290 1.39e-11 65.1
MS.gene42609.t1 AT2G24570 53.125 64 28 1 139 202 244 305 6.11e-18 82.8
MS.gene42609.t1 AT2G30250 59.649 57 22 1 139 195 329 384 8.37e-18 83.2
MS.gene42609.t1 AT2G30250 46.154 65 31 3 139 203 167 227 5.64e-11 63.2
MS.gene42609.t1 AT5G52830 42.697 89 50 1 139 227 166 253 4.82e-17 80.5
MS.gene42609.t1 AT1G29280 50.877 57 28 0 139 195 75 131 6.70e-17 79.0
MS.gene42609.t1 AT5G64810 50.847 59 28 1 137 195 109 166 8.80e-17 77.4
MS.gene42609.t1 AT1G55600 57.895 57 23 1 139 195 308 363 1.94e-16 79.7
MS.gene42609.t1 AT2G21900 54.237 59 26 1 137 195 108 165 2.17e-16 76.3
MS.gene42609.t1 AT4G30935 39.785 93 48 2 139 231 332 416 2.31e-16 79.3
MS.gene42609.t1 AT4G26440 31.953 169 74 6 65 195 263 428 3.95e-16 79.0
MS.gene42609.t1 AT4G26440 48.387 62 30 2 139 200 179 238 1.61e-11 65.1
MS.gene42609.t1 AT2G44745 52.542 59 27 1 137 195 144 201 5.00e-16 75.9
MS.gene42609.t1 AT4G39410 45.946 74 37 2 137 208 222 294 5.39e-16 77.0
MS.gene42609.t1 AT2G46130 45.556 90 43 4 116 205 13 96 6.07e-16 72.8
MS.gene42609.t1 AT2G37260 45.333 75 34 2 121 195 258 325 1.44e-15 76.3
MS.gene42609.t1 AT2G37260 56.897 58 23 2 139 196 86 141 8.49e-15 73.9
MS.gene42609.t1 AT2G37260 45.333 75 34 2 121 195 256 323 1.45e-15 76.3
MS.gene42609.t1 AT2G37260 56.897 58 23 2 139 196 84 139 8.55e-15 73.9
MS.gene42609.t1 AT3G58710 52.632 57 27 0 139 195 72 128 1.83e-15 75.1
MS.gene42609.t1 AT3G58710 52.632 57 27 0 139 195 71 127 1.92e-15 75.1
MS.gene42609.t1 AT2G37260 45.333 75 34 2 121 195 338 405 1.98e-15 76.3
MS.gene42609.t1 AT2G37260 56.897 58 23 2 139 196 166 221 8.79e-15 74.7
MS.gene42609.t1 AT2G34830 47.692 65 34 0 131 195 208 272 2.11e-15 76.3
MS.gene42609.t1 AT2G34830 47.692 65 34 0 131 195 217 281 2.24e-15 76.3
MS.gene42609.t1 AT1G30650 47.692 65 34 0 131 195 210 274 4.54e-15 75.5
MS.gene42609.t1 AT4G01250 36.441 118 63 3 139 249 129 241 6.60e-15 73.9
MS.gene42609.t1 AT1G69310 46.753 77 31 4 119 195 133 199 8.01e-15 73.6
MS.gene42609.t1 AT5G43290 46.154 65 34 1 131 195 107 170 9.89e-15 73.2
MS.gene42609.t1 AT4G23550 38.961 77 47 0 137 213 139 215 9.32e-14 70.9
MS.gene42609.t1 AT5G45050 38.614 101 51 2 100 195 1115 1209 1.75e-13 71.2
MS.gene42609.t1 AT5G45050 49.123 57 29 0 139 195 1181 1237 1.90e-13 71.2
MS.gene42609.t1 AT5G45050 38.614 101 51 2 100 195 1004 1098 2.03e-13 70.9
MS.gene42609.t1 AT2G46400 43.836 73 37 2 123 193 91 161 9.08e-13 67.8
MS.gene42609.t1 AT2G46130 44.444 90 40 5 116 205 13 92 5.89e-12 61.6
MS.gene42609.t1 AT3G01080 50.820 61 28 2 139 199 206 264 1.23e-11 64.7
MS.gene42609.t1 AT5G45260 40.260 77 44 1 139 213 1209 1285 4.61e-11 63.9
MS.gene42609.t1 AT4G12020 34.559 136 67 7 132 267 462 575 9.13e-11 63.2
MS.gene42609.t1 AT4G12020 34.559 136 67 7 132 267 462 575 9.13e-11 63.2
MS.gene42609.t1 AT4G12020 34.559 136 67 7 132 267 462 575 9.19e-11 63.2
MS.gene42609.t1 AT4G12020 34.559 136 67 7 132 267 462 575 9.74e-11 63.2
MS.gene42609.t1 AT4G12020 34.559 136 67 7 132 267 462 575 9.93e-11 63.2
MS.gene42609.t1 AT4G12020 34.559 136 67 7 132 267 462 575 9.93e-11 63.2
MS.gene42609.t1 AT4G12020 34.559 136 67 7 132 267 462 575 9.97e-11 63.2

Find 65 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCACTTGCCACTGCCATTTC+TGG 0.147288 3.1:-84076349 MS.gene42609:CDS
GCCTTTCTCTTTCGCGATAT+TGG 0.191286 3.1:+84078549 None:intergenic
GCAAGTGCTGTTGCGAAATT+AGG 0.254403 3.1:+84076364 None:intergenic
CCTCATCCTCACCAATTAAT+TGG 0.285074 3.1:-84076510 MS.gene42609:CDS
CTTGGTCCAGCCAAGAAAAT+TGG 0.286759 3.1:-84076461 MS.gene42609:CDS
TCAGGTTGCTGATCAGGTTT+TGG 0.288511 3.1:-84078709 MS.gene42609:intron
TGAGCTGTACGCCAATTAAT+TGG 0.305961 3.1:+84076499 None:intergenic
GAACTAGTGAGTGACATTTC+AGG 0.307165 3.1:+84076577 None:intergenic
CATTTCTGGAAGAATAATTC+TGG 0.326631 3.1:-84076335 MS.gene42609:CDS
ATGAATTCAGGTTGCTGATC+AGG 0.334261 3.1:-84078715 MS.gene42609:intron
CAGAATTATTCTTCCAGAAA+TGG 0.354382 3.1:+84076336 None:intergenic
TTCAAGTGCTCCTTTGCTCC+TGG 0.357212 3.1:-84078165 MS.gene42609:CDS
GGATATCAGTGGAGAAAATA+TGG 0.364647 3.1:-84078228 MS.gene42609:CDS
GCACATGTGGTTCAGTTTCT+CGG 0.370673 3.1:+84078644 None:intergenic
GAAAATTGTATCAATAGGTT+TGG 0.376161 3.1:-84078516 MS.gene42609:CDS
TATATCCTAACCGCATTAAC+AGG 0.387690 3.1:+84078826 None:intergenic
ACCAATATCGCGAAAGAGAA+AGG 0.387719 3.1:-84078550 MS.gene42609:CDS
GTGTTGAAAATTGTATCAAT+AGG 0.392499 3.1:-84078521 MS.gene42609:CDS
ACCTAAACACTCTCCCTTCT+CGG 0.392654 3.1:-84078855 MS.gene42609:CDS
CCCGAGAAGGGAGAGTGTTT+AGG 0.410406 3.1:+84078854 None:intergenic
GTCTAAGTAGTGAGAATAAG+AGG 0.450271 3.1:-84078671 MS.gene42609:CDS
CTAGAGATAATCCCTCTCCT+AGG 0.467386 3.1:-84078194 MS.gene42609:CDS
GCTGGAACTAAATTATATGT+AGG 0.476216 3.1:+84076535 None:intergenic
CTGGAACTAAATTATATGTA+GGG 0.478747 3.1:+84076536 None:intergenic
CCTAAACACTCTCCCTTCTC+GGG 0.479017 3.1:-84078854 MS.gene42609:CDS
TGGAAGAATAATTCTGGATG+TGG 0.479580 3.1:-84076329 MS.gene42609:CDS
TCTGTTGAACTAATAACTGC+TGG 0.493414 3.1:+84076410 None:intergenic
AGAACTTACTAAGCTGGCAT+TGG 0.495787 3.1:+84078386 None:intergenic
CCAATTAATTGGTGAGGATG+AGG 0.495942 3.1:+84076510 None:intergenic
CACAGGGCAGCCAGGAGCAA+AGG 0.503671 3.1:+84078155 None:intergenic
AATTGTAGAACTTACTAAGC+TGG 0.507761 3.1:+84078380 None:intergenic
TATGTGGTCACTAATATGCT+CGG 0.512756 3.1:+84076631 None:intergenic
ATGTAGGGGTTGTTTCACTT+TGG 0.521708 3.1:+84076551 None:intergenic
ATTGGTGAGGATGAGGATGC+TGG 0.529139 3.1:+84076517 None:intergenic
TCAAGCTTCAGAGCTTGACT+TGG 0.532387 3.1:-84076479 MS.gene42609:CDS
TGTCTCCTCCTCAGTAGTAA+TGG 0.551953 3.1:+84078470 None:intergenic
GCAGTTATTAGTTCAACAGA+TGG 0.557437 3.1:-84076407 MS.gene42609:CDS
ATGTGGTCACTAATATGCTC+GGG 0.561198 3.1:+84076632 None:intergenic
GACCTCGCCGAGAGTTTCCA+AGG 0.562692 3.1:-84078430 MS.gene42609:CDS
TTAACAGGTGTGTCCCGAGA+AGG 0.571165 3.1:+84078841 None:intergenic
GTTGTGCTCTCCTTCGTATG+TGG 0.572822 3.1:+84076615 None:intergenic
GAGCACTTGAAGTAAGCCCT+AGG 0.576521 3.1:+84078177 None:intergenic
TAACAGGTGTGTCCCGAGAA+GGG 0.578050 3.1:+84078842 None:intergenic
CAGTATAATTGTCGCACATG+TGG 0.579804 3.1:+84078631 None:intergenic
ATCTGTACGCACAAGAACCT+TGG 0.586094 3.1:+84078413 None:intergenic
TAGAGATAATCCCTCTCCTA+GGG 0.588394 3.1:-84078193 MS.gene42609:CDS
TATTCTTCCAGAAATGGCAG+TGG 0.593871 3.1:+84076342 None:intergenic
TTGAAGTAAGCCCTAGGAGA+GGG 0.594565 3.1:+84078183 None:intergenic
TTTCAGGTTGGTGATGCGCA+TGG 0.595445 3.1:+84076593 None:intergenic
GTATTGAAGTATGTGAAGGA+TGG 0.607747 3.1:-84078249 MS.gene42609:intron
ATACATGTGTGAATTCACTT+CGG 0.612284 3.1:+84076301 None:intergenic
TCGGGACACACCTGTTAATG+CGG 0.614647 3.1:-84078836 MS.gene42609:intron
TTGGGTATTGAAGTATGTGA+AGG 0.631029 3.1:-84078253 MS.gene42609:intron
CCACATGGAACCAACGTGTG+TGG 0.633718 3.1:-84078890 None:intergenic
CTTGAAGTAAGCCCTAGGAG+AGG 0.642278 3.1:+84078182 None:intergenic
ACAAGAACCTTGGAAACTCT+CGG 0.643388 3.1:+84078423 None:intergenic
ATGTGAAGGATGGATATCAG+TGG 0.648222 3.1:-84078239 MS.gene42609:CDS
TGGAACTAAATTATATGTAG+GGG 0.651480 3.1:+84076537 None:intergenic
CAGCACCATTACTACTGAGG+AGG 0.656419 3.1:-84078475 MS.gene42609:CDS
AACCTTGGAAACTCTCGGCG+AGG 0.657343 3.1:+84078428 None:intergenic
TGTACGCCAATTAATTGGTG+AGG 0.660265 3.1:+84076504 None:intergenic
TAGTGAGTGACATTTCAGGT+TGG 0.685861 3.1:+84076581 None:intergenic
GAGCAGCACCATTACTACTG+AGG 0.711173 3.1:-84078478 MS.gene42609:CDS
ATATTAGTGACCACATACGA+AGG 0.729115 3.1:-84076625 MS.gene42609:CDS
AGAGAAGTATCCACACACGT+TGG 0.751057 3.1:+84078880 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATTATATTAATTGTG+AGG - chr3.1:84078199-84078218 MS.gene42609:CDS 10.0%
!! AATAATAATTAACATAAAGA+GGG + chr3.1:84078527-84078546 None:intergenic 10.0%
!! AATATAATAACAATATAGAT+TGG - chr3.1:84077511-84077530 MS.gene42609:intron 10.0%
!! TAATAATAATTAACATAAAG+AGG + chr3.1:84078528-84078547 None:intergenic 10.0%
!! TCTTTATGTTAATTATTATT+AGG - chr3.1:84078527-84078546 MS.gene42609:CDS 10.0%
!! TTTATATAAAATAATGAGAA+AGG - chr3.1:84078274-84078293 MS.gene42609:intron 10.0%
!!! ATATAACATTTTTTATACTT+AGG + chr3.1:84077742-84077761 None:intergenic 10.0%
!! AAAAATTAACTTATGAATTC+AGG - chr3.1:84076474-84076493 MS.gene42609:CDS 15.0%
!! ATAATAAAGATATTAGTGTT+TGG - chr3.1:84076895-84076914 MS.gene42609:intron 15.0%
!! CAAAAAACATTTAATCAATA+AGG - chr3.1:84078060-84078079 MS.gene42609:intron 15.0%
!! TGTTAAAATAATTAAGAGAT+TGG + chr3.1:84077107-84077126 None:intergenic 15.0%
!!! ATGATTTTGAATTTTATTAG+TGG - chr3.1:84077881-84077900 MS.gene42609:intron 15.0%
!!! CATAAGTTAATTTTTGAATA+TGG + chr3.1:84076469-84076488 None:intergenic 15.0%
!!! TGATTTTGAATTTTATTAGT+GGG - chr3.1:84077882-84077901 MS.gene42609:intron 15.0%
!! ATATGGAATGTTATAATTCA+AGG + chr3.1:84076452-84076471 None:intergenic 20.0%
!! GTTGGAAATATATAGAAAAA+TGG - chr3.1:84077403-84077422 MS.gene42609:intron 20.0%
!!! GATTTTGAATTTTATTAGTG+GGG - chr3.1:84077883-84077902 MS.gene42609:intron 20.0%
!!! TGGTTACAAAATTTTATTAG+TGG - chr3.1:84077917-84077936 MS.gene42609:intron 20.0%
!!! TGGTTTTGAAATTTTATTAG+TGG - chr3.1:84077937-84077956 MS.gene42609:intron 20.0%
!!! TGTTGTCTTGATTTAATTTT+TGG - chr3.1:84076866-84076885 MS.gene42609:intron 20.0%
!!! TTTTGCTTATTAGAAAACTA+AGG + chr3.1:84078045-84078064 None:intergenic 20.0%
! AATAAAAAATCCCCCTTATT+TGG + chr3.1:84077606-84077625 None:intergenic 25.0%
! CTGGAACTAAATTATATGTA+GGG + chr3.1:84078668-84078687 None:intergenic 25.0%
! GAAAATTGTATCAATAGGTT+TGG - chr3.1:84076685-84076704 MS.gene42609:intron 25.0%
! GTGTTGAAAATTGTATCAAT+AGG - chr3.1:84076680-84076699 MS.gene42609:intron 25.0%
! TAAACATTGTCAACCAAATA+AGG - chr3.1:84077201-84077220 MS.gene42609:intron 25.0%
! TGAAAAAAAGGAGAATTCTT+TGG - chr3.1:84077237-84077256 MS.gene42609:intron 25.0%
! TGATACCAATAGAATACATT+GGG - chr3.1:84078464-84078483 MS.gene42609:CDS 25.0%
! TGGAACTAAATTATATGTAG+GGG + chr3.1:84078667-84078686 None:intergenic 25.0%
! TGTTATAATTCAAGGAAAAG+AGG + chr3.1:84076444-84076463 None:intergenic 25.0%
! TTGATACCAATAGAATACAT+TGG - chr3.1:84078463-84078482 MS.gene42609:CDS 25.0%
!! ATAAAAAATCCCCCTTATTT+GGG + chr3.1:84077605-84077624 None:intergenic 25.0%
!!! AAAATAACTAAGGCTTTGTT+TGG - chr3.1:84077344-84077363 MS.gene42609:intron 25.0%
!!! AAATAACTAAGGCTTTGTTT+GGG - chr3.1:84077345-84077364 MS.gene42609:intron 25.0%
!!! AAGAATTCTCCTTTTTTTCA+AGG + chr3.1:84077237-84077256 None:intergenic 25.0%
!!! AGAATTCTCCTTTTTTTCAA+GGG + chr3.1:84077236-84077255 None:intergenic 25.0%
!!! CGAGATTGTAATTTTAACAA+AGG + chr3.1:84078365-84078384 None:intergenic 25.0%
!!! TAAATACCTTCTTTTTCACA+GGG + chr3.1:84077065-84077084 None:intergenic 25.0%
!!! TTAAATACCTTCTTTTTCAC+AGG + chr3.1:84077066-84077085 None:intergenic 25.0%
!!! TTTATACTTAGGCTTTGTTT+GGG + chr3.1:84077731-84077750 None:intergenic 25.0%
!!! TTTTATACTTAGGCTTTGTT+TGG + chr3.1:84077732-84077751 None:intergenic 25.0%
AATTGTAGAACTTACTAAGC+TGG + chr3.1:84076824-84076843 None:intergenic 30.0%
ATTCATGAAAACTTATCTCG+TGG - chr3.1:84078132-84078151 MS.gene42609:intron 30.0%
CAGAATTATTCTTCCAGAAA+TGG + chr3.1:84078868-84078887 None:intergenic 30.0%
GAACTCAAAAATTGTATTGG+GGG + chr3.1:84077581-84077600 None:intergenic 30.0%
GCTGGAACTAAATTATATGT+AGG + chr3.1:84078669-84078688 None:intergenic 30.0%
GGAACTCAAAAATTGTATTG+GGG + chr3.1:84077582-84077601 None:intergenic 30.0%
GGGAACTCAAAAATTGTATT+GGG + chr3.1:84077583-84077602 None:intergenic 30.0%
TAAAGCCCAATGTATTCTAT+TGG + chr3.1:84078472-84078491 None:intergenic 30.0%
TGGAAGAAATAGAAGACATT+GGG + chr3.1:84077663-84077682 None:intergenic 30.0%
TTACAATCTCGAATTCTTGT+TGG - chr3.1:84078374-84078393 MS.gene42609:intron 30.0%
TTCGTCATAGACCAAATTAT+TGG + chr3.1:84077853-84077872 None:intergenic 30.0%
! CAAAATGTTTCGTGGAATTT+TGG - chr3.1:84077148-84077167 MS.gene42609:intron 30.0%
! CAAAATTCCACGAAACATTT+TGG + chr3.1:84077150-84077169 None:intergenic 30.0%
! CATTTCTGGAAGAATAATTC+TGG - chr3.1:84078866-84078885 MS.gene42609:CDS 30.0%
! GATACAATTTTCAACACTCT+CGG + chr3.1:84076677-84076696 None:intergenic 30.0%
! TAAAAAATCCCCCTTATTTG+GGG + chr3.1:84077604-84077623 None:intergenic 30.0%
! TCATCAACTACCAATTTTCT+TGG + chr3.1:84078753-84078772 None:intergenic 30.0%
! TTCTTTGGTACACTTTTAGT+TGG - chr3.1:84077252-84077271 MS.gene42609:intron 30.0%
!! GAGATGCTGAATTTGTTTTT+GGG - chr3.1:84076930-84076949 MS.gene42609:intron 30.0%
!! TCTTTGGTACACTTTTAGTT+GGG - chr3.1:84077253-84077272 MS.gene42609:intron 30.0%
!! TGAGATGCTGAATTTGTTTT+TGG - chr3.1:84076929-84076948 MS.gene42609:intron 30.0%
!!! TTAGTGGGGTTTCTTTTTTT+TGG - chr3.1:84077897-84077916 MS.gene42609:intron 30.0%
AAGAAATAGAAGACATTGGG+AGG + chr3.1:84077660-84077679 None:intergenic 35.0%
ATATTAGTGACCACATACGA+AGG - chr3.1:84078576-84078595 MS.gene42609:CDS 35.0%
ATTAAGTAGGAGTAGCTTCT+AGG - chr3.1:84077286-84077305 MS.gene42609:intron 35.0%
CTAACATGTCAAGTAGTACT+TGG - chr3.1:84078402-84078421 MS.gene42609:CDS 35.0%
GAATTCCTCCCTTGAAAAAA+AGG - chr3.1:84077225-84077244 MS.gene42609:intron 35.0%
GACCAAATTATTGGAACCAA+CGG + chr3.1:84077844-84077863 None:intergenic 35.0%
GCAGTTATTAGTTCAACAGA+TGG - chr3.1:84078794-84078813 MS.gene42609:intron 35.0%
GGATATCAGTGGAGAAAATA+TGG - chr3.1:84076973-84076992 MS.gene42609:intron 35.0%
GGGGAACTCAAAAATTGTAT+TGG + chr3.1:84077584-84077603 None:intergenic 35.0%
GGGTACGAGTTTAATTAAGT+AGG - chr3.1:84077273-84077292 MS.gene42609:intron 35.0%
GTATTGAAGTATGTGAAGGA+TGG - chr3.1:84076952-84076971 MS.gene42609:intron 35.0%
GTCTAAGTAGTGAGAATAAG+AGG - chr3.1:84076530-84076549 MS.gene42609:CDS 35.0%
GTGGAAGAAATAGAAGACAT+TGG + chr3.1:84077664-84077683 None:intergenic 35.0%
TATATCCTAACCGCATTAAC+AGG + chr3.1:84076378-84076397 None:intergenic 35.0%
TATGTGGTCACTAATATGCT+CGG + chr3.1:84078573-84078592 None:intergenic 35.0%
TCTGTTGAACTAATAACTGC+TGG + chr3.1:84078794-84078813 None:intergenic 35.0%
TGGAAGAATAATTCTGGATG+TGG - chr3.1:84078872-84078891 MS.gene42609:CDS 35.0%
TTAGTCACCAAAATGTTTCG+TGG - chr3.1:84077140-84077159 MS.gene42609:intron 35.0%
TTGGAACCAACGGTATTATA+TGG + chr3.1:84077834-84077853 None:intergenic 35.0%
! AAAAAATCCCCCTTATTTGG+GGG + chr3.1:84077603-84077622 None:intergenic 35.0%
!! TACCGTTGGTTCCAATAATT+TGG - chr3.1:84077839-84077858 MS.gene42609:intron 35.0%
!! TTGGGTATTGAAGTATGTGA+AGG - chr3.1:84076948-84076967 MS.gene42609:intron 35.0%
!!! ATTCTCCTTTTTTTCAAGGG+AGG + chr3.1:84077233-84077252 None:intergenic 35.0%
!!! TTTTGAGTTCCCCCAAATAA+GGG - chr3.1:84077591-84077610 MS.gene42609:intron 35.0%
!!! TTTTTGAGTTCCCCCAAATA+AGG - chr3.1:84077590-84077609 MS.gene42609:intron 35.0%
ACAAGAACCTTGGAAACTCT+CGG + chr3.1:84076781-84076800 None:intergenic 40.0%
ACCAATATCGCGAAAGAGAA+AGG - chr3.1:84076651-84076670 MS.gene42609:CDS 40.0%
AGAACTTACTAAGCTGGCAT+TGG + chr3.1:84076818-84076837 None:intergenic 40.0%
AGGGAGGAATTCTCCTTATT+TGG + chr3.1:84077217-84077236 None:intergenic 40.0%
ATGTGAAGGATGGATATCAG+TGG - chr3.1:84076962-84076981 MS.gene42609:intron 40.0%
ATGTGGTCACTAATATGCTC+GGG + chr3.1:84078572-84078591 None:intergenic 40.0%
CAGTATAATTGTCGCACATG+TGG + chr3.1:84076573-84076592 None:intergenic 40.0%
CCAATTAATTGGTGAGGATG+AGG + chr3.1:84078694-84078713 None:intergenic 40.0%
CCTCATCCTCACCAATTAAT+TGG - chr3.1:84078691-84078710 MS.gene42609:CDS 40.0%
GAACTAGTGAGTGACATTTC+AGG + chr3.1:84078627-84078646 None:intergenic 40.0%
GGAAAAAAGGAAGGAACAAG+TGG + chr3.1:84077683-84077702 None:intergenic 40.0%
TAGAGATAATCCCTCTCCTA+GGG - chr3.1:84077008-84077027 MS.gene42609:intron 40.0%
TATTCTTCCAGAAATGGCAG+TGG + chr3.1:84078862-84078881 None:intergenic 40.0%
TGAGCTGTACGCCAATTAAT+TGG + chr3.1:84078705-84078724 None:intergenic 40.0%
TGTACGCCAATTAATTGGTG+AGG + chr3.1:84078700-84078719 None:intergenic 40.0%
! ATGTAGGGGTTGTTTCACTT+TGG + chr3.1:84078653-84078672 None:intergenic 40.0%
! ATTGTATTGGGGGAGAGTTT+TGG + chr3.1:84077571-84077590 None:intergenic 40.0%
! CAACTACCAATTTTCTTGGC+TGG + chr3.1:84078749-84078768 None:intergenic 40.0%
! CTTTGTTTGGGAGTTTAGAG+GGG + chr3.1:84077719-84077738 None:intergenic 40.0%
! TAGTGAGTGACATTTCAGGT+TGG + chr3.1:84078623-84078642 None:intergenic 40.0%
! TTGTATTGGGGGAGAGTTTT+GGG + chr3.1:84077570-84077589 None:intergenic 40.0%
! TTTGAGTTCCCCCAAATAAG+GGG - chr3.1:84077592-84077611 MS.gene42609:intron 40.0%
!! ATGAATTCAGGTTGCTGATC+AGG - chr3.1:84076486-84076505 MS.gene42609:CDS 40.0%
!! GCTTTGTTTGGGAGTTTAGA+GGG + chr3.1:84077720-84077739 None:intergenic 40.0%
!! TAAGGCTTTGTTTGGGAGTT+TGG - chr3.1:84077352-84077371 MS.gene42609:intron 40.0%
!!! GAGGGTTTTGGAAAAAAGGA+AGG + chr3.1:84077692-84077711 None:intergenic 40.0%
ACACACCTGTTAATGCGGTT+AGG - chr3.1:84076370-84076389 MS.gene42609:CDS 45.0%
ACCAACGGTATTATATGGCG+AGG + chr3.1:84077829-84077848 None:intergenic 45.0%
ACCTAAACACTCTCCCTTCT+CGG - chr3.1:84076346-84076365 MS.gene42609:CDS 45.0%
ATAGAAGACATTGGGAGGAG+AGG + chr3.1:84077655-84077674 None:intergenic 45.0%
ATCTGTACGCACAAGAACCT+TGG + chr3.1:84076791-84076810 None:intergenic 45.0%
CTAGAGATAATCCCTCTCCT+AGG - chr3.1:84077007-84077026 MS.gene42609:intron 45.0%
CTTGGTCCAGCCAAGAAAAT+TGG - chr3.1:84078740-84078759 MS.gene42609:intron 45.0%
GCACATGTGGTTCAGTTTCT+CGG + chr3.1:84076560-84076579 None:intergenic 45.0%
GCCTTTCTCTTTCGCGATAT+TGG + chr3.1:84076655-84076674 None:intergenic 45.0%
TAGAAGACATTGGGAGGAGA+GGG + chr3.1:84077654-84077673 None:intergenic 45.0%
TCAAGCTTCAGAGCTTGACT+TGG - chr3.1:84078722-84078741 MS.gene42609:intron 45.0%
TCCTCGCCATATAATACCGT+TGG - chr3.1:84077825-84077844 MS.gene42609:intron 45.0%
TGTCTCCTCCTCAGTAGTAA+TGG + chr3.1:84076734-84076753 None:intergenic 45.0%
TTGAAGTAAGCCCTAGGAGA+GGG + chr3.1:84077021-84077040 None:intergenic 45.0%
TTGAGTTCCCCCAAATAAGG+GGG - chr3.1:84077593-84077612 MS.gene42609:intron 45.0%
! CTTTGTTTGGGAGTTTGGAG+GGG - chr3.1:84077357-84077376 MS.gene42609:intron 45.0%
! GCAAGTGCTGTTGCGAAATT+AGG + chr3.1:84078840-84078859 None:intergenic 45.0%
! TGTATTGGGGGAGAGTTTTG+GGG + chr3.1:84077569-84077588 None:intergenic 45.0%
!! AGAGAAGTATCCACACACGT+TGG + chr3.1:84076324-84076343 None:intergenic 45.0%
!! GCTTTGTTTGGGAGTTTGGA+GGG - chr3.1:84077356-84077375 MS.gene42609:intron 45.0%
!! GGCTTTGTTTGGGAGTTTAG+AGG + chr3.1:84077721-84077740 None:intergenic 45.0%
!! TCAGGTTGCTGATCAGGTTT+TGG - chr3.1:84076492-84076511 MS.gene42609:CDS 45.0%
!!! AGGGGAGGGTTTTGGAAAAA+AGG + chr3.1:84077696-84077715 None:intergenic 45.0%
!!! AATTAATATAATTTTTTTAG+AGG + chr3.1:84078196-84078215 None:intergenic 5.0%
!!! ATTTTAATTTAAAATAACTA+AGG - chr3.1:84077334-84077353 MS.gene42609:intron 5.0%
ATTGGTGAGGATGAGGATGC+TGG + chr3.1:84078687-84078706 None:intergenic 50.0%
CAGCACCATTACTACTGAGG+AGG - chr3.1:84076726-84076745 MS.gene42609:intron 50.0%
CCTAAACACTCTCCCTTCTC+GGG - chr3.1:84076347-84076366 MS.gene42609:CDS 50.0%
CTTGAAGTAAGCCCTAGGAG+AGG + chr3.1:84077022-84077041 None:intergenic 50.0%
GAGCACTTGAAGTAAGCCCT+AGG + chr3.1:84077027-84077046 None:intergenic 50.0%
GAGCAGCACCATTACTACTG+AGG - chr3.1:84076723-84076742 MS.gene42609:intron 50.0%
GTTGTGCTCTCCTTCGTATG+TGG + chr3.1:84078589-84078608 None:intergenic 50.0%
GTTTGGGAGTTTAGAGGGGA+GGG + chr3.1:84077715-84077734 None:intergenic 50.0%
TAACAGGTGTGTCCCGAGAA+GGG + chr3.1:84076362-84076381 None:intergenic 50.0%
TCGGGACACACCTGTTAATG+CGG - chr3.1:84076365-84076384 MS.gene42609:CDS 50.0%
TGGCTGCCCTGTGAAAAAGA+AGG - chr3.1:84077056-84077075 MS.gene42609:intron 50.0%
TGTTTGGGAGTTTAGAGGGG+AGG + chr3.1:84077716-84077735 None:intergenic 50.0%
TTAACAGGTGTGTCCCGAGA+AGG + chr3.1:84076363-84076382 None:intergenic 50.0%
TTCAAGTGCTCCTTTGCTCC+TGG - chr3.1:84077036-84077055 MS.gene42609:intron 50.0%
TTTGGGAGTTTAGAGGGGAG+GGG + chr3.1:84077714-84077733 None:intergenic 50.0%
TTTGGGAGTTTGGAGGGGAA+GGG - chr3.1:84077362-84077381 MS.gene42609:intron 50.0%
!! GGCTTTGTTTGGGAGTTTGG+AGG - chr3.1:84077355-84077374 MS.gene42609:intron 50.0%
!! GTATTGGGGGAGAGTTTTGG+GGG + chr3.1:84077568-84077587 None:intergenic 50.0%
!! TTCTTTTTCACAGGGCAGCC+AGG + chr3.1:84077057-84077076 None:intergenic 50.0%
!! TTTCAGGTTGGTGATGCGCA+TGG + chr3.1:84078611-84078630 None:intergenic 50.0%
!!! AGAGTTTTGGGGGGTTATGG+AGG + chr3.1:84077558-84077577 None:intergenic 50.0%
!!! GAGTTTTGGGGGGTTATGGA+GGG + chr3.1:84077557-84077576 None:intergenic 50.0%
!!! TATTGGGGGAGAGTTTTGGG+GGG + chr3.1:84077567-84077586 None:intergenic 50.0%
AACCTTGGAAACTCTCGGCG+AGG + chr3.1:84076776-84076795 None:intergenic 55.0%
ACATTGGGAGGAGAGGGCTT+TGG + chr3.1:84077648-84077667 None:intergenic 55.0%
GTTTGGGAGTTTGGAGGGGA+AGG - chr3.1:84077361-84077380 MS.gene42609:intron 55.0%
! GCACTTGCCACTGCCATTTC+TGG - chr3.1:84078852-84078871 MS.gene42609:CDS 55.0%
!! AAGGGAGGGGAGGGTTTTGA+TGG - chr3.1:84077380-84077399 MS.gene42609:intron 55.0%
!! AGGGAGGGGAGGGTTTTGAT+GGG - chr3.1:84077381-84077400 MS.gene42609:intron 55.0%
!! AGGGGAGGGTTTTGATGGGT+TGG - chr3.1:84077385-84077404 MS.gene42609:intron 55.0%
!! CCCGAGAAGGGAGAGTGTTT+AGG + chr3.1:84076350-84076369 None:intergenic 55.0%
!!! GGGAGAGTTTTGGGGGGTTA+TGG + chr3.1:84077561-84077580 None:intergenic 55.0%
GACCTCGCCGAGAGTTTCCA+AGG - chr3.1:84076771-84076790 MS.gene42609:intron 60.0%
GAGTTTGGAGGGGAAGGGAG+GGG - chr3.1:84077367-84077386 MS.gene42609:intron 60.0%
GGAGTTTAGAGGGGAGGGGA+GGG + chr3.1:84077710-84077729 None:intergenic 60.0%
GGAGTTTGGAGGGGAAGGGA+GGG - chr3.1:84077366-84077385 MS.gene42609:intron 60.0%
! TAGAGGGGAGGGGAGGGTTT+TGG + chr3.1:84077704-84077723 None:intergenic 60.0%
! TTGGGAGGAGAGGGCTTTGG+AGG + chr3.1:84077645-84077664 None:intergenic 60.0%
CACAGGGCAGCCAGGAGCAA+AGG + chr3.1:84077049-84077068 None:intergenic 65.0%
GGGAGTTTAGAGGGGAGGGG+AGG + chr3.1:84077711-84077730 None:intergenic 65.0%
GGGAGTTTGGAGGGGAAGGG+AGG - chr3.1:84077365-84077384 MS.gene42609:intron 65.0%
TTGGAGGGGAAGGGAGGGGA+GGG - chr3.1:84077371-84077390 MS.gene42609:intron 65.0%
TTTGGAGGGGAAGGGAGGGG+AGG - chr3.1:84077370-84077389 MS.gene42609:intron 65.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 84076315 84078908 84076315 ID=MS.gene42609
chr3.1 mRNA 84076315 84078908 84076315 ID=MS.gene42609.t1;Parent=MS.gene42609
chr3.1 exon 84078837 84078908 84078837 ID=MS.gene42609.t1.exon1;Parent=MS.gene42609.t1
chr3.1 CDS 84078837 84078908 84078837 ID=cds.MS.gene42609.t1;Parent=MS.gene42609.t1
chr3.1 exon 84078395 84078727 84078395 ID=MS.gene42609.t1.exon2;Parent=MS.gene42609.t1
chr3.1 CDS 84078395 84078727 84078395 ID=cds.MS.gene42609.t1;Parent=MS.gene42609.t1
chr3.1 exon 84078146 84078262 84078146 ID=MS.gene42609.t1.exon3;Parent=MS.gene42609.t1
chr3.1 CDS 84078146 84078262 84078146 ID=cds.MS.gene42609.t1;Parent=MS.gene42609.t1
chr3.1 exon 84076315 84076674 84076315 ID=MS.gene42609.t1.exon4;Parent=MS.gene42609.t1
chr3.1 CDS 84076315 84076674 84076315 ID=cds.MS.gene42609.t1;Parent=MS.gene42609.t1
Gene Sequence

>MS.gene42609

ATGGAACCAACGTGTGTGGATACTTCTCTCAACCTAAACACTCTCCCTTCTCGGGACACACCTGTTAATGCGGTTAGGATATACTATATTATACTTATAAACACATAATATCTTAGTTTTTTTTCTCCTCTTTTCCTTGAATTATAACATTCCATATTCAAAAATTAACTTATGAATTCAGGTTGCTGATCAGGTTTTGGTTGAAGAGTTGAAGCGTCTAAGTAGTGAGAATAAGAGGTTAACCGAGAAACTGAACCACATGTGCGACAATTATACTGCTTTGCGAAAGCATTTGAGTCAATTCAGTCACACAAAATTTGAAAATGAATTAGTATCACCAATATCGCGAAAGAGAAAGGCCGAGAGTGTTGAAAATTGTATCAATAGGTTTGGCTATGCTATTGCTGAGAGCAGCACCATTACTACTGAGGAGGAGACATTCAAACACAACAACATGACCTCGCCGAGAGTTTCCAAGGTTCTTGTGCGTACAGATGCATCCAATGCCAGCTTAGTAAGTTCTACAATTTCAAATTTAATCATACAGATTTTGTTGTCTTGATTTAATTTTTGGAACTATATAATAAAGATATTAGTGTTTGGCTAGTACTAACTGAGATGCTGAATTTGTTTTTGGGTATTGAAGTATGTGAAGGATGGATATCAGTGGAGAAAATATGGTCAGAAAGTCACTAGAGATAATCCCTCTCCTAGGGCTTACTTCAAGTGCTCCTTTGCTCCTGGCTGCCCTGTGAAAAAGAAGGTATTTAATTAATAGAAGTAGTAGTGCCAATCTCTTAATTATTTTAACAACAAAAAAATTAGTTAGTCACCAAAATGTTTCGTGGAATTTTGGAACAATGAGTTTTAAAATGATTCTTGAAATTAAACATTGTCAACCAAATAAGGAGAATTCCTCCCTTGAAAAAAAGGAGAATTCTTTGGTACACTTTTAGTTGGGTACGAGTTTAATTAAGTAGGAGTAGCTTCTAGGAAAAACTGATTCAAAATTTAAATTTATTTTAATTTAAAATAACTAAGGCTTTGTTTGGGAGTTTGGAGGGGAAGGGAGGGGAGGGTTTTGATGGGTTGGAAATATATAGAAAAATGGACAAAAAATTCACATTTTTTGAAAGAACAGTTTTTTCAGAGAATGATAAACTAATACTTATGATTAATATACTTTTAATTTTAAAAATATAATAACAATATAGATTGGATTTGAAAAATTCATATAAACCCTCCATAACCCCCCAAAACTCTCCCCCAATACAATTTTTGAGTTCCCCCAAATAAGGGGGATTTTTTATTATGAGTAAAAAATTAACCTCCAAAGCCCTCTCCTCCCAATGTCTTCTATTTCTTCCACTTGTTCCTTCCTTTTTTCCAAAACCCTCCCCTCCCCTCTAAACTCCCAAACAAAGCCTAAGTATAAAAAATGTTATATATCAAATGATTGAATGATAATTACATACTCAATCAAACTTCATTCTCTAGAATAAAAGAGTCTTCCTCGCCATATAATACCGTTGGTTCCAATAATTTGGTCTATGACGAATATGATTAATGATTTTGAATTTTATTAGTGGGGTTTCTTTTTTTTGGTTACAAAATTTTATTAGTGGTTTTGAAATTTTATTAGTGGTTACAAAATTTTATTAGTGGATTATTCACTAACAAGAATTAACAATCAATTGATGATTCGCTCTAACAAAAACTTACAACTTCCTTAGTTTTCTAATAAGCAAAAAACATTTAATCAATAAGGCAAATGATTTTTTAATATCATAAAAAATATTTATATTTTTCAAAGTTTCATTCATGAAAACTTATCTCGTGGAAATAAAAGAATAGTCGAACAAAAGTTTATAATAATTTCCTCTAAAAAAATTATATTAATTGTGAGGTTTTCTAAGAATTGCATTATTAAATTAAATAGAATGAAAGTAGTTAAATGTGTTTATATAAAATAATGAGAAAGGAATTTTTTTTTTTTAATAAAAGTAATGTCAATGATCATTTTATGATGTCTTTTATATTTGAACTTCCTTTGTTAAAATTACAATCTCGAATTCTTGTTGGTTGAACTAACATGTCAAGTAGTACTTGGTGTTTTTCTTTTTCTTTTTCTTTTTCTTATGTTGATACTTGATACCAATAGAATACATTGGGCTTTATGCATCGTGAAGTAATACTAATTGAATTAAATCCCTCTTTATGTTAATTATTATTAGGTGCAAAGAAGTGTAGAAGACCCGAGCATATTAGTGACCACATACGAAGGAGAGCACAACCATGCGCATCACCAACCTGAAATGTCACTCACTAGTTCAAACCAAAGTGAAACAACCCCTACATATAATTTAGTTCCAGCATCCTCATCCTCACCAATTAATTGGCGTACAGCTCAAGCTTCAGAGCTTGACTTGGTCCAGCCAAGAAAATTGGTAGTTGATGATTCTCATAAGTCGTCTATCCAGCAGTTATTAGTTCAACAGATGGCTACTTCTTTGACAAGAGATCCTAATTTCGCAACAGCACTTGCCACTGCCATTTCTGGAAGAATAATTCTGGATGTGGAAAAGCCGAAGTGA
Protein sequence

>MS.gene42609.t1

MEPTCVDTSLNLNTLPSRDTPVNAVADQVLVEELKRLSSENKRLTEKLNHMCDNYTALRKHLSQFSHTKFENELVSPISRKRKAESVENCINRFGYAIAESSTITTEEETFKHNNMTSPRVSKVLVRTDASNASLYVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPGCPVKKKVQRSVEDPSILVTTYEGEHNHAHHQPEMSLTSSNQSETTPTYNLVPASSSSPINWRTAQASELDLVQPRKLVVDDSHKSSIQQLLVQQMATSLTRDPNFATALATAISGRIILDVEKPK