Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42616.t1 | AES73439.1 | 80.5 | 507 | 67 | 7 | 1 | 488 | 5 | 498 | 5.40E-213 | 750.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42616.t1 | O81791 | 50.0 | 72 | 34 | 1 | 383 | 454 | 240 | 309 | 3.6e-08 | 61.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42616.t1 | G7J8D2 | 80.5 | 507 | 67 | 7 | 1 | 488 | 5 | 498 | 3.9e-213 | 750.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene42616.t1 | TF | RWP-RK |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42616.t1 | MTR_3g104830 | 85.010 | 507 | 44 | 7 | 1 | 488 | 5 | 498 | 0.0 | 846 |
| MS.gene42616.t1 | MTR_3g465110 | 50.991 | 555 | 181 | 15 | 1 | 487 | 10 | 541 | 1.48e-156 | 456 |
| MS.gene42616.t1 | MTR_5g024070 | 50.725 | 69 | 32 | 1 | 383 | 451 | 199 | 265 | 3.52e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42616.t1 | AT5G16100 | 32.721 | 272 | 128 | 11 | 248 | 472 | 177 | 440 | 4.78e-33 | 130 |
Find 101 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCACAATGTTTAATCATTT+TGG | 0.139096 | 3.4:+91797588 | None:intergenic |
| TACCTTTCTGTGGGGCCATC+TGG | 0.198703 | 3.4:+91797802 | None:intergenic |
| GGCAATACATTGGAATTAAA+TGG | 0.208227 | 3.4:+91799263 | None:intergenic |
| TTCCAACTCCATGAAGATTT+TGG | 0.209996 | 3.4:+91799384 | None:intergenic |
| AATCTTATTCAAAATAATTC+AGG | 0.275363 | 3.4:-91798276 | MS.gene42616:intron |
| CACCATCAGATACCTGTTAA+TGG | 0.281140 | 3.4:-91798598 | MS.gene42616:CDS |
| TTTGAAAAGCTTGAGATTCA+TGG | 0.294484 | 3.4:-91798649 | MS.gene42616:CDS |
| TTGGATTGATGATATTAATA+TGG | 0.313839 | 3.4:-91798301 | MS.gene42616:CDS |
| CTTGGTGGTAGTAATAATAA+TGG | 0.330532 | 3.4:-91799293 | MS.gene42616:CDS |
| ACCATCAGATACCTGTTAAT+GGG | 0.352749 | 3.4:-91798597 | MS.gene42616:CDS |
| ACTGATGGGGCCCCATTAAC+AGG | 0.356308 | 3.4:+91798586 | None:intergenic |
| GGGGTCCATGCCGAGTTTGT+TGG | 0.357115 | 3.4:+91799408 | None:intergenic |
| TGATCTGCTGCTTCATCAAT+AGG | 0.368145 | 3.4:+91797884 | None:intergenic |
| TACTATGGACTTGGAATACT+TGG | 0.370161 | 3.4:-91799311 | MS.gene42616:CDS |
| CAAGAGCAAATGGGTGATAA+TGG | 0.372132 | 3.4:-91798092 | MS.gene42616:CDS |
| CCATCCCAAGAAAATTACTA+TGG | 0.379676 | 3.4:-91799326 | MS.gene42616:CDS |
| CTCTTTGCACTGGATTGGAT+TGG | 0.394071 | 3.4:-91798320 | MS.gene42616:CDS |
| GGGTCCATGCCGAGTTTGTT+GGG | 0.400094 | 3.4:+91799409 | None:intergenic |
| AAAACGGGAATCTGAATTGC+AGG | 0.401372 | 3.4:+91798888 | None:intergenic |
| TCAAATTACTAGCAAATCAA+TGG | 0.407732 | 3.4:-91797669 | MS.gene42616:CDS |
| TCTTATGTTTACAGATGAAT+TGG | 0.410262 | 3.4:-91798120 | MS.gene42616:intron |
| TCGGTTTGGTTCAACAAAAC+GGG | 0.413527 | 3.4:+91798873 | None:intergenic |
| TTGATTAAGTGCCCGCAGTT+CGG | 0.413996 | 3.4:+91798854 | None:intergenic |
| TTCGGTTTGGTTCAACAAAA+CGG | 0.419751 | 3.4:+91798872 | None:intergenic |
| GATTCTAAATTGTAAGCAAA+TGG | 0.423137 | 3.4:+91799212 | None:intergenic |
| GTAATTTGATCTGCTTCAAA+AGG | 0.424097 | 3.4:+91797683 | None:intergenic |
| TGAGACTCTTTGCACTGGAT+TGG | 0.424222 | 3.4:-91798325 | MS.gene42616:CDS |
| CAAGAAAATTACTATGGACT+TGG | 0.426462 | 3.4:-91799320 | MS.gene42616:CDS |
| GATAAATCTGCTAGTGTTGT+TGG | 0.428775 | 3.4:+91799473 | None:intergenic |
| ACCTTTCTGTGGGGCCATCT+GGG | 0.433450 | 3.4:+91797803 | None:intergenic |
| GGACCCCACCAAAATCTTCA+TGG | 0.435855 | 3.4:-91799392 | MS.gene42616:CDS |
| CCATGATATTCAACAAGGTC+AGG | 0.445114 | 3.4:-91799129 | MS.gene42616:CDS |
| ATGAACTACCATCCACTTCA+AGG | 0.454887 | 3.4:+91798943 | None:intergenic |
| TCATATTGATCTTGAACCAT+TGG | 0.458294 | 3.4:+91799002 | None:intergenic |
| AAGAAAACTTGTCGTAAAGC+AGG | 0.469657 | 3.4:-91797830 | MS.gene42616:CDS |
| CCTGACCTTGTTGAATATCA+TGG | 0.476020 | 3.4:+91799129 | None:intergenic |
| CACCAAAATCTTCATGGAGT+TGG | 0.477847 | 3.4:-91799386 | MS.gene42616:CDS |
| TTATTCATATTGAAGAAACT+TGG | 0.478548 | 3.4:+91799497 | None:intergenic |
| TAAGTGCCCGCAGTTCGGTT+TGG | 0.482116 | 3.4:+91798859 | None:intergenic |
| ACTTGTTCTGAGAGGTTCCT+AGG | 0.487950 | 3.4:+91798065 | None:intergenic |
| AGGCAAGGGCAAGGACTGAA+GGG | 0.491007 | 3.4:-91797630 | MS.gene42616:CDS |
| AGCAAATCAATGGGAAGGAC+AGG | 0.496313 | 3.4:-91797659 | MS.gene42616:CDS |
| ATTGGTGGAGCAAGAGCAAA+TGG | 0.500485 | 3.4:-91798102 | MS.gene42616:CDS |
| CAAATTACTAGCAAATCAAT+GGG | 0.500638 | 3.4:-91797668 | MS.gene42616:CDS |
| TATCGCTGCTGCGGCTAAAG+TGG | 0.502806 | 3.4:+91797523 | None:intergenic |
| TATGTTTACAGATGAATTGG+TGG | 0.515772 | 3.4:-91798117 | MS.gene42616:intron |
| AACTGCGGGCACTTAATCAA+TGG | 0.515958 | 3.4:-91798851 | MS.gene42616:CDS |
| GAGGCAAGGGCAAGGACTGA+AGG | 0.520542 | 3.4:-91797631 | MS.gene42616:CDS |
| TATTCATATTGAAGAAACTT+GGG | 0.521262 | 3.4:+91799498 | None:intergenic |
| TCAATCATTTGATAAACTGA+TGG | 0.522363 | 3.4:+91798571 | None:intergenic |
| GTCTCATAAAATTCAGACAT+TGG | 0.526543 | 3.4:+91798342 | None:intergenic |
| CAATCATTTGATAAACTGAT+GGG | 0.528489 | 3.4:+91798572 | None:intergenic |
| TTACCACTCTGATTCTGTTG+TGG | 0.528506 | 3.4:+91799242 | None:intergenic |
| GCTTGAGATTCATGGAAGGT+TGG | 0.532570 | 3.4:-91798641 | MS.gene42616:CDS |
| ATTGAAGAAACTTGGGTCAA+CGG | 0.535851 | 3.4:+91799505 | None:intergenic |
| TGGAATAAATAGCCTTGAAG+TGG | 0.539422 | 3.4:-91798955 | MS.gene42616:CDS |
| GTTGAACCAAACCGAACTGC+GGG | 0.542214 | 3.4:-91798865 | MS.gene42616:CDS |
| ATAAATCTGCTAGTGTTGTT+GGG | 0.542463 | 3.4:+91799474 | None:intergenic |
| TATGGACTTGGAATACTTGG+TGG | 0.542573 | 3.4:-91799308 | MS.gene42616:CDS |
| CTGCGGCTAAAGTGGCAAGA+AGG | 0.552292 | 3.4:+91797531 | None:intergenic |
| AGTTTGTTGGGACAGTGCAG+TGG | 0.563322 | 3.4:+91799421 | None:intergenic |
| ACCCAGATGGCCCCACAGAA+AGG | 0.563782 | 3.4:-91797804 | MS.gene42616:intron |
| CCCCATTAACAGGTATCTGA+TGG | 0.567348 | 3.4:+91798596 | None:intergenic |
| GTAAAGCAGGGTTACCCAGA+TGG | 0.568095 | 3.4:-91797817 | MS.gene42616:CDS |
| TGTGTGGAACGTCATTTAGC+AGG | 0.571153 | 3.4:-91798384 | MS.gene42616:CDS |
| GTCCATGTTGTTGTACATCA+TGG | 0.572620 | 3.4:+91799060 | None:intergenic |
| AGAAAACTTGTCGTAAAGCA+GGG | 0.586540 | 3.4:-91797829 | MS.gene42616:CDS |
| ACCAAAATGATTAAACATTG+TGG | 0.587437 | 3.4:-91797589 | MS.gene42616:CDS |
| CGGCTAAAGTGGCAAGAAGG+CGG | 0.587716 | 3.4:+91797534 | None:intergenic |
| ATTCTGTTGTGGCAATACAT+TGG | 0.591773 | 3.4:+91799253 | None:intergenic |
| CACCATGATGTACAACAACA+TGG | 0.591982 | 3.4:-91799062 | MS.gene42616:CDS |
| AGGACAGGATACAGAGGCAA+GGG | 0.593438 | 3.4:-91797644 | MS.gene42616:CDS |
| CTGTCCCAACAAACTCGGCA+TGG | 0.594201 | 3.4:-91799413 | MS.gene42616:CDS |
| GTTTGTTGGGACAGTGCAGT+GGG | 0.598692 | 3.4:+91799422 | None:intergenic |
| GATATTCAACAAGGTCAGGA+TGG | 0.598749 | 3.4:-91799125 | MS.gene42616:CDS |
| AAAATGATTAAACATTGTGG+TGG | 0.599399 | 3.4:-91797586 | MS.gene42616:CDS |
| ATAAATAGCCTTGAAGTGGA+TGG | 0.603975 | 3.4:-91798951 | MS.gene42616:CDS |
| CTGCACTGTCCCAACAAACT+CGG | 0.604462 | 3.4:-91799418 | MS.gene42616:CDS |
| TGAATATCATGGTAAATGAA+CGG | 0.610177 | 3.4:+91799140 | None:intergenic |
| CCATCAGATACCTGTTAATG+GGG | 0.617286 | 3.4:-91798596 | MS.gene42616:CDS |
| AAAAGCTTGAGATTCATGGA+AGG | 0.617730 | 3.4:-91798645 | MS.gene42616:CDS |
| GGCAAGGGCAAGGACTGAAG+GGG | 0.618518 | 3.4:-91797629 | MS.gene42616:CDS |
| TTACTAGCAAATCAATGGGA+AGG | 0.619972 | 3.4:-91797664 | MS.gene42616:CDS |
| TGTTGAACCAAACCGAACTG+CGG | 0.627319 | 3.4:-91798866 | MS.gene42616:CDS |
| CAACAACATGGACATGGACA+TGG | 0.630152 | 3.4:-91799050 | MS.gene42616:CDS |
| CATCATATTCAACAACTGCA+TGG | 0.630346 | 3.4:-91799176 | MS.gene42616:CDS |
| AGAGAAATCATACACACTGA+TGG | 0.630751 | 3.4:-91798783 | MS.gene42616:intron |
| AAATACGGGGTTACTGTGGG+TGG | 0.632071 | 3.4:+91798828 | None:intergenic |
| GCGATGTCATACAACGCGGT+TGG | 0.634750 | 3.4:+91797556 | None:intergenic |
| AGGATACAGAGGCAAGGGCA+AGG | 0.638191 | 3.4:-91797639 | MS.gene42616:CDS |
| AAGGACAGGATACAGAGGCA+AGG | 0.639471 | 3.4:-91797645 | MS.gene42616:CDS |
| ATTTACCATGATATTCAACA+AGG | 0.642604 | 3.4:-91799134 | MS.gene42616:CDS |
| ATATTATTACTTGTTCTGAG+AGG | 0.643167 | 3.4:+91798057 | None:intergenic |
| GATGTACAACAACATGGACA+TGG | 0.659086 | 3.4:-91799056 | MS.gene42616:CDS |
| AATCATTTGATAAACTGATG+GGG | 0.687280 | 3.4:+91798573 | None:intergenic |
| TTGGTGGAGCAAGAGCAAAT+GGG | 0.694143 | 3.4:-91798101 | MS.gene42616:CDS |
| ATGGGAAGGACAGGATACAG+AGG | 0.708986 | 3.4:-91797650 | MS.gene42616:CDS |
| TGGGTGATAATGGAACGCCT+AGG | 0.709329 | 3.4:-91798082 | MS.gene42616:CDS |
| CATATTCAACAACTGCATGG+TGG | 0.712817 | 3.4:-91799173 | MS.gene42616:CDS |
| TTGCCACAACAGAATCAGAG+TGG | 0.727563 | 3.4:-91799245 | MS.gene42616:CDS |
| GGCGGCGATGTCATACAACG+CGG | 0.812023 | 3.4:+91797552 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACAATAATAATTTTTCATT+TGG | - | chr3.4:91798107-91798126 | MS.gene42616:CDS | 10.0% |
| !! | AATCTTATTCAAAATAATTC+AGG | - | chr3.4:91798806-91798825 | MS.gene42616:CDS | 15.0% |
| !! | ATATCAAAATAATAGAAACA+TGG | + | chr3.4:91798362-91798381 | None:intergenic | 15.0% |
| !! | TATCAAAATAATAGAAACAT+GGG | + | chr3.4:91798361-91798380 | None:intergenic | 15.0% |
| !!! | ATTGTTGTTATTTTTATCAA+TGG | + | chr3.4:91797634-91797653 | None:intergenic | 15.0% |
| !! | GATAAAAATAACAACAATGT+GGG | - | chr3.4:91797636-91797655 | MS.gene42616:CDS | 20.0% |
| !! | TATTCATATTGAAGAAACTT+GGG | + | chr3.4:91797587-91797606 | None:intergenic | 20.0% |
| !! | TGATAAAAATAACAACAATG+TGG | - | chr3.4:91797635-91797654 | MS.gene42616:CDS | 20.0% |
| !! | TTATTCATATTGAAGAAACT+TGG | + | chr3.4:91797588-91797607 | None:intergenic | 20.0% |
| !!! | AAAAATTCTTTATTTCACCA+AGG | + | chr3.4:91798667-91798686 | None:intergenic | 20.0% |
| !!! | TGGTAATATTGATTCATTTT+CGG | - | chr3.4:91797977-91797996 | MS.gene42616:intron | 20.0% |
| !!! | TGGTGAAATAAAGAATTTTT+TGG | - | chr3.4:91798667-91798686 | MS.gene42616:intron | 20.0% |
| !!! | TTGGATTGATGATATTAATA+TGG | - | chr3.4:91798781-91798800 | MS.gene42616:intron | 20.0% |
| ! | AAAATGATTAAACATTGTGG+TGG | - | chr3.4:91799496-91799515 | MS.gene42616:CDS | 25.0% |
| ! | AATCATTTGATAAACTGATG+GGG | + | chr3.4:91798512-91798531 | None:intergenic | 25.0% |
| ! | ACCAAAATGATTAAACATTG+TGG | - | chr3.4:91799493-91799512 | MS.gene42616:CDS | 25.0% |
| ! | AGACACATTATATTAGCAAA+AGG | + | chr3.4:91799356-91799375 | None:intergenic | 25.0% |
| ! | ATTTACCATGATATTCAACA+AGG | - | chr3.4:91797948-91797967 | MS.gene42616:intron | 25.0% |
| ! | CAAATTACTAGCAAATCAAT+GGG | - | chr3.4:91799414-91799433 | MS.gene42616:CDS | 25.0% |
| ! | CAATCATTTGATAAACTGAT+GGG | + | chr3.4:91798513-91798532 | None:intergenic | 25.0% |
| ! | GATTCTAAATTGTAAGCAAA+TGG | + | chr3.4:91797873-91797892 | None:intergenic | 25.0% |
| ! | TCAAATTACTAGCAAATCAA+TGG | - | chr3.4:91799413-91799432 | MS.gene42616:CDS | 25.0% |
| ! | TCAATCATTTGATAAACTGA+TGG | + | chr3.4:91798514-91798533 | None:intergenic | 25.0% |
| ! | TCTTATGTTTACAGATGAAT+TGG | - | chr3.4:91798962-91798981 | MS.gene42616:CDS | 25.0% |
| ! | TCTTGTGTGTTATACTTATT+TGG | - | chr3.4:91799311-91799330 | MS.gene42616:CDS | 25.0% |
| ! | TGAATATCATGGTAAATGAA+CGG | + | chr3.4:91797945-91797964 | None:intergenic | 25.0% |
| !! | AACTTTTGTAACAGTTTTTG+TGG | - | chr3.4:91798635-91798654 | MS.gene42616:CDS | 25.0% |
| !! | AAGTCCATAGTAATTTTCTT+GGG | + | chr3.4:91797763-91797782 | None:intergenic | 25.0% |
| !! | ACCACAATGTTTAATCATTT+TGG | + | chr3.4:91799497-91799516 | None:intergenic | 25.0% |
| !! | ACTTTTGTAACAGTTTTTGT+GGG | - | chr3.4:91798636-91798655 | MS.gene42616:CDS | 25.0% |
| !! | ATATTATTACTTGTTCTGAG+AGG | + | chr3.4:91799028-91799047 | None:intergenic | 25.0% |
| !! | TGAATATGATGATCATTTTC+TGG | + | chr3.4:91797897-91797916 | None:intergenic | 25.0% |
| !!! | GTTTAATCATTTTGGTTTGA+AGG | + | chr3.4:91799489-91799508 | None:intergenic | 25.0% |
| CAAGAAAATTACTATGGACT+TGG | - | chr3.4:91797762-91797781 | MS.gene42616:intron | 30.0% | |
| GGCAATACATTGGAATTAAA+TGG | + | chr3.4:91797822-91797841 | None:intergenic | 30.0% | |
| GTAATTTGATCTGCTTCAAA+AGG | + | chr3.4:91799402-91799421 | None:intergenic | 30.0% | |
| GTCTCATAAAATTCAGACAT+TGG | + | chr3.4:91798743-91798762 | None:intergenic | 30.0% | |
| TATGTTTACAGATGAATTGG+TGG | - | chr3.4:91798965-91798984 | MS.gene42616:CDS | 30.0% | |
| TCATATTGATCTTGAACCAT+TGG | + | chr3.4:91798083-91798102 | None:intergenic | 30.0% | |
| TGACAACAACTGCAAAAATA+CGG | + | chr3.4:91798272-91798291 | None:intergenic | 30.0% | |
| TGTAGTACTATACTAAGACT+TGG | + | chr3.4:91798544-91798563 | None:intergenic | 30.0% | |
| TGTGTCTTAAAATTAACGAC+AGG | - | chr3.4:91799369-91799388 | MS.gene42616:CDS | 30.0% | |
| TTCCTCTGTTCAATACAATA+GGG | + | chr3.4:91799129-91799148 | None:intergenic | 30.0% | |
| TTTCCTCTGTTCAATACAAT+AGG | + | chr3.4:91799130-91799149 | None:intergenic | 30.0% | |
| TTTGAAAAGCTTGAGATTCA+TGG | - | chr3.4:91798433-91798452 | MS.gene42616:CDS | 30.0% | |
| ! | AAAATAATTCAGGTTTGTCC+TGG | - | chr3.4:91798816-91798835 | MS.gene42616:CDS | 30.0% |
| ! | AAAGACTTTTACCTTTCTGT+GGG | + | chr3.4:91799292-91799311 | None:intergenic | 30.0% |
| ! | ATAAATCTGCTAGTGTTGTT+GGG | + | chr3.4:91797611-91797630 | None:intergenic | 30.0% |
| ! | CAAGTCCATAGTAATTTTCT+TGG | + | chr3.4:91797764-91797783 | None:intergenic | 30.0% |
| ! | CTTGGTGGTAGTAATAATAA+TGG | - | chr3.4:91797789-91797808 | MS.gene42616:intron | 30.0% |
| ! | CTTTTCATTCATGTGACATT+GGG | - | chr3.4:91798924-91798943 | MS.gene42616:CDS | 30.0% |
| ! | TCTTTTCATTCATGTGACAT+TGG | - | chr3.4:91798923-91798942 | MS.gene42616:CDS | 30.0% |
| ! | TGAAACATTTTCTGTTCCAA+TGG | - | chr3.4:91798064-91798083 | MS.gene42616:intron | 30.0% |
| AAAAGCTTGAGATTCATGGA+AGG | - | chr3.4:91798437-91798456 | MS.gene42616:intron | 35.0% | |
| AAGAAAACTTGTCGTAAAGC+AGG | - | chr3.4:91799252-91799271 | MS.gene42616:CDS | 35.0% | |
| ACAACAACTGCAAAAATACG+GGG | + | chr3.4:91798270-91798289 | None:intergenic | 35.0% | |
| ACCATCAGATACCTGTTAAT+GGG | - | chr3.4:91798485-91798504 | MS.gene42616:intron | 35.0% | |
| AGAAAACTTGTCGTAAAGCA+GGG | - | chr3.4:91799253-91799272 | MS.gene42616:CDS | 35.0% | |
| AGAGAAATCATACACACTGA+TGG | - | chr3.4:91798299-91798318 | MS.gene42616:CDS | 35.0% | |
| ATTCTGTTGTGGCAATACAT+TGG | + | chr3.4:91797832-91797851 | None:intergenic | 35.0% | |
| ATTGAAGAAACTTGGGTCAA+CGG | + | chr3.4:91797580-91797599 | None:intergenic | 35.0% | |
| CATCATATTCAACAACTGCA+TGG | - | chr3.4:91797906-91797925 | MS.gene42616:CDS | 35.0% | |
| CCATCCCAAGAAAATTACTA+TGG | - | chr3.4:91797756-91797775 | MS.gene42616:intron | 35.0% | |
| GACAACAACTGCAAAAATAC+GGG | + | chr3.4:91798271-91798290 | None:intergenic | 35.0% | |
| GATAAATCTGCTAGTGTTGT+TGG | + | chr3.4:91797612-91797631 | None:intergenic | 35.0% | |
| TACCCTATTGTATTGAACAG+AGG | - | chr3.4:91799124-91799143 | MS.gene42616:CDS | 35.0% | |
| TACTATGGACTTGGAATACT+TGG | - | chr3.4:91797771-91797790 | MS.gene42616:intron | 35.0% | |
| TTACTAGCAAATCAATGGGA+AGG | - | chr3.4:91799418-91799437 | MS.gene42616:CDS | 35.0% | |
| ! | AAGACTTTTACCTTTCTGTG+GGG | + | chr3.4:91799291-91799310 | None:intergenic | 35.0% |
| ! | ATAAATAGCCTTGAAGTGGA+TGG | - | chr3.4:91798131-91798150 | MS.gene42616:intron | 35.0% |
| ! | CAAGTTTTCTTGAGAACTGT+TGG | + | chr3.4:91799243-91799262 | None:intergenic | 35.0% |
| ! | CCATAGTAATTTTCTTGGGA+TGG | + | chr3.4:91797759-91797778 | None:intergenic | 35.0% |
| ! | GAAAGACTTTTACCTTTCTG+TGG | + | chr3.4:91799293-91799312 | None:intergenic | 35.0% |
| ! | TAGTAATTTTCTTGGGATGG+TGG | + | chr3.4:91797756-91797775 | None:intergenic | 35.0% |
| ! | TGGAATAAATAGCCTTGAAG+TGG | - | chr3.4:91798127-91798146 | MS.gene42616:intron | 35.0% |
| ! | TTCCAACTCCATGAAGATTT+TGG | + | chr3.4:91797701-91797720 | None:intergenic | 35.0% |
| ! | TTTTATGAGACTCTTTGCAC+TGG | - | chr3.4:91798752-91798771 | MS.gene42616:intron | 35.0% |
| !! | AACTCCATGAAGATTTTGGT+GGG | + | chr3.4:91797697-91797716 | None:intergenic | 35.0% |
| !! | TTCGGTTTGGTTCAACAAAA+CGG | + | chr3.4:91798213-91798232 | None:intergenic | 35.0% |
| AAAACGGGAATCTGAATTGC+AGG | + | chr3.4:91798197-91798216 | None:intergenic | 40.0% | |
| ATGAACTACCATCCACTTCA+AGG | + | chr3.4:91798142-91798161 | None:intergenic | 40.0% | |
| CAAAAATACGGGGTTACTGT+GGG | + | chr3.4:91798260-91798279 | None:intergenic | 40.0% | |
| CAAGAGCAAATGGGTGATAA+TGG | - | chr3.4:91798990-91799009 | MS.gene42616:CDS | 40.0% | |
| CACCAAAATCTTCATGGAGT+TGG | - | chr3.4:91797696-91797715 | MS.gene42616:intron | 40.0% | |
| CACCATCAGATACCTGTTAA+TGG | - | chr3.4:91798484-91798503 | MS.gene42616:intron | 40.0% | |
| CACCATGATGTACAACAACA+TGG | - | chr3.4:91798020-91798039 | MS.gene42616:intron | 40.0% | |
| CATATTCAACAACTGCATGG+TGG | - | chr3.4:91797909-91797928 | MS.gene42616:CDS | 40.0% | |
| CCATCAGATACCTGTTAATG+GGG | - | chr3.4:91798486-91798505 | MS.gene42616:intron | 40.0% | |
| CCATGATATTCAACAAGGTC+AGG | - | chr3.4:91797953-91797972 | MS.gene42616:intron | 40.0% | |
| CCTGACCTTGTTGAATATCA+TGG | + | chr3.4:91797956-91797975 | None:intergenic | 40.0% | |
| GACATTGGGTTAAGTTTGAG+TGG | - | chr3.4:91798938-91798957 | MS.gene42616:CDS | 40.0% | |
| GATATTCAACAAGGTCAGGA+TGG | - | chr3.4:91797957-91797976 | MS.gene42616:intron | 40.0% | |
| GATGTACAACAACATGGACA+TGG | - | chr3.4:91798026-91798045 | MS.gene42616:intron | 40.0% | |
| GTCCATGTTGTTGTACATCA+TGG | + | chr3.4:91798025-91798044 | None:intergenic | 40.0% | |
| TATGGACTTGGAATACTTGG+TGG | - | chr3.4:91797774-91797793 | MS.gene42616:intron | 40.0% | |
| TTACCACTCTGATTCTGTTG+TGG | + | chr3.4:91797843-91797862 | None:intergenic | 40.0% | |
| ! | AGTTTTTGTGGGAAAAGCCT+TGG | - | chr3.4:91798647-91798666 | MS.gene42616:CDS | 40.0% |
| ! | CAACTCCATGAAGATTTTGG+TGG | + | chr3.4:91797698-91797717 | None:intergenic | 40.0% |
| ! | TGATCTGCTGCTTCATCAAT+AGG | + | chr3.4:91799201-91799220 | None:intergenic | 40.0% |
| !! | ACTCCATGAAGATTTTGGTG+GGG | + | chr3.4:91797696-91797715 | None:intergenic | 40.0% |
| !! | TCGGTTTGGTTCAACAAAAC+GGG | + | chr3.4:91798212-91798231 | None:intergenic | 40.0% |
| !!! | TTTTTTGGCACAGTACTGTG+TGG | - | chr3.4:91798682-91798701 | MS.gene42616:intron | 40.0% |
| AACTGCGGGCACTTAATCAA+TGG | - | chr3.4:91798231-91798250 | MS.gene42616:intron | 45.0% | |
| AGCAAATCAATGGGAAGGAC+AGG | - | chr3.4:91799423-91799442 | MS.gene42616:CDS | 45.0% | |
| ATTGGTGGAGCAAGAGCAAA+TGG | - | chr3.4:91798980-91798999 | MS.gene42616:CDS | 45.0% | |
| CAACAACATGGACATGGACA+TGG | - | chr3.4:91798032-91798051 | MS.gene42616:intron | 45.0% | |
| CCCCATTAACAGGTATCTGA+TGG | + | chr3.4:91798489-91798508 | None:intergenic | 45.0% | |
| GCAAAAATACGGGGTTACTG+TGG | + | chr3.4:91798261-91798280 | None:intergenic | 45.0% | |
| GCTTGAGATTCATGGAAGGT+TGG | - | chr3.4:91798441-91798460 | MS.gene42616:intron | 45.0% | |
| GTTTGTCCTGGAAATCACGA+CGG | - | chr3.4:91798828-91798847 | MS.gene42616:CDS | 45.0% | |
| TGAGACTCTTTGCACTGGAT+TGG | - | chr3.4:91798757-91798776 | MS.gene42616:intron | 45.0% | |
| TGTGTGGAACGTCATTTAGC+AGG | - | chr3.4:91798698-91798717 | MS.gene42616:intron | 45.0% | |
| TGTTGAACCAAACCGAACTG+CGG | - | chr3.4:91798216-91798235 | MS.gene42616:intron | 45.0% | |
| TTGATTAAGTGCCCGCAGTT+CGG | + | chr3.4:91798231-91798250 | None:intergenic | 45.0% | |
| TTGCCACAACAGAATCAGAG+TGG | - | chr3.4:91797837-91797856 | MS.gene42616:CDS | 45.0% | |
| TTGGTGGAGCAAGAGCAAAT+GGG | - | chr3.4:91798981-91799000 | MS.gene42616:CDS | 45.0% | |
| ! | CTCTTTGCACTGGATTGGAT+TGG | - | chr3.4:91798762-91798781 | MS.gene42616:intron | 45.0% |
| !! | ACTTGTTCTGAGAGGTTCCT+AGG | + | chr3.4:91799020-91799039 | None:intergenic | 45.0% |
| !!! | ATTTTCTTGGGATGGTGGAG+TGG | + | chr3.4:91797751-91797770 | None:intergenic | 45.0% |
| !! | TATTTATTTGAATTATTTAT+AGG | - | chr3.4:91798403-91798422 | MS.gene42616:CDS | 5.0% |
| AAATACGGGGTTACTGTGGG+TGG | + | chr3.4:91798257-91798276 | None:intergenic | 50.0% | |
| AAGGACAGGATACAGAGGCA+AGG | - | chr3.4:91799437-91799456 | MS.gene42616:CDS | 50.0% | |
| AGGACAGGATACAGAGGCAA+GGG | - | chr3.4:91799438-91799457 | MS.gene42616:CDS | 50.0% | |
| ATGGGAAGGACAGGATACAG+AGG | - | chr3.4:91799432-91799451 | MS.gene42616:CDS | 50.0% | |
| CCTGGAAATCACGACGGAAA+AGG | - | chr3.4:91798834-91798853 | MS.gene42616:CDS | 50.0% | |
| CTGCACTGTCCCAACAAACT+CGG | - | chr3.4:91797664-91797683 | MS.gene42616:CDS | 50.0% | |
| GGACCCCACCAAAATCTTCA+TGG | - | chr3.4:91797690-91797709 | MS.gene42616:CDS | 50.0% | |
| GTAAAGCAGGGTTACCCAGA+TGG | - | chr3.4:91799265-91799284 | MS.gene42616:CDS | 50.0% | |
| GTTGAACCAAACCGAACTGC+GGG | - | chr3.4:91798217-91798236 | MS.gene42616:intron | 50.0% | |
| ! | CCTTTTCCGTCGTGATTTCC+AGG | + | chr3.4:91798837-91798856 | None:intergenic | 50.0% |
| ! | GTTTGTTGGGACAGTGCAGT+GGG | + | chr3.4:91797663-91797682 | None:intergenic | 50.0% |
| !! | AGTTTGTTGGGACAGTGCAG+TGG | + | chr3.4:91797664-91797683 | None:intergenic | 50.0% |
| !! | TGGGTGATAATGGAACGCCT+AGG | - | chr3.4:91799000-91799019 | MS.gene42616:CDS | 50.0% |
| ACCTTTCTGTGGGGCCATCT+GGG | + | chr3.4:91799282-91799301 | None:intergenic | 55.0% | |
| ACTGATGGGGCCCCATTAAC+AGG | + | chr3.4:91798499-91798518 | None:intergenic | 55.0% | |
| AGGATACAGAGGCAAGGGCA+AGG | - | chr3.4:91799443-91799462 | MS.gene42616:CDS | 55.0% | |
| AGGCAAGGGCAAGGACTGAA+GGG | - | chr3.4:91799452-91799471 | MS.gene42616:CDS | 55.0% | |
| CTGTCCCAACAAACTCGGCA+TGG | - | chr3.4:91797669-91797688 | MS.gene42616:CDS | 55.0% | |
| GCGATGTCATACAACGCGGT+TGG | + | chr3.4:91799529-91799548 | None:intergenic | 55.0% | |
| TAAGTGCCCGCAGTTCGGTT+TGG | + | chr3.4:91798226-91798245 | None:intergenic | 55.0% | |
| TACCTTTCTGTGGGGCCATC+TGG | + | chr3.4:91799283-91799302 | None:intergenic | 55.0% | |
| ! | GGGTCCATGCCGAGTTTGTT+GGG | + | chr3.4:91797676-91797695 | None:intergenic | 55.0% |
| ACCCAGATGGCCCCACAGAA+AGG | - | chr3.4:91799278-91799297 | MS.gene42616:CDS | 60.0% | |
| GAGGCAAGGGCAAGGACTGA+AGG | - | chr3.4:91799451-91799470 | MS.gene42616:CDS | 60.0% | |
| GGCAAGGGCAAGGACTGAAG+GGG | - | chr3.4:91799453-91799472 | MS.gene42616:CDS | 60.0% | |
| GGCGGCGATGTCATACAACG+CGG | + | chr3.4:91799533-91799552 | None:intergenic | 60.0% | |
| GGGGTCCATGCCGAGTTTGT+TGG | + | chr3.4:91797677-91797696 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 91797537 | 91799567 | 91797537 | ID=MS.gene42616 |
| chr3.4 | mRNA | 91797537 | 91799567 | 91797537 | ID=MS.gene42616.t1;Parent=MS.gene42616 |
| chr3.4 | exon | 91798784 | 91799567 | 91798784 | ID=MS.gene42616.t1.exon1;Parent=MS.gene42616.t1 |
| chr3.4 | CDS | 91798784 | 91799567 | 91798784 | ID=cds.MS.gene42616.t1;Parent=MS.gene42616.t1 |
| chr3.4 | exon | 91798571 | 91798679 | 91798571 | ID=MS.gene42616.t1.exon2;Parent=MS.gene42616.t1 |
| chr3.4 | CDS | 91798571 | 91798679 | 91798571 | ID=cds.MS.gene42616.t1;Parent=MS.gene42616.t1 |
| chr3.4 | exon | 91798277 | 91798455 | 91798277 | ID=MS.gene42616.t1.exon3;Parent=MS.gene42616.t1 |
| chr3.4 | CDS | 91798277 | 91798455 | 91798277 | ID=cds.MS.gene42616.t1;Parent=MS.gene42616.t1 |
| chr3.4 | exon | 91798067 | 91798128 | 91798067 | ID=MS.gene42616.t1.exon4;Parent=MS.gene42616.t1 |
| chr3.4 | CDS | 91798067 | 91798128 | 91798067 | ID=cds.MS.gene42616.t1;Parent=MS.gene42616.t1 |
| chr3.4 | exon | 91797805 | 91797960 | 91797805 | ID=MS.gene42616.t1.exon5;Parent=MS.gene42616.t1 |
| chr3.4 | CDS | 91797805 | 91797960 | 91797805 | ID=cds.MS.gene42616.t1;Parent=MS.gene42616.t1 |
| chr3.4 | exon | 91797537 | 91797713 | 91797537 | ID=MS.gene42616.t1.exon6;Parent=MS.gene42616.t1 |
| chr3.4 | CDS | 91797537 | 91797713 | 91797537 | ID=cds.MS.gene42616.t1;Parent=MS.gene42616.t1 |
| Gene Sequence |
| Protein sequence |
