Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42693.t1 | AES73439.1 | 85.8 | 507 | 52 | 5 | 1 | 500 | 5 | 498 | 1.00E-222 | 782.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42693.t1 | Q9FGD1 | 27.9 | 136 | 74 | 4 | 358 | 481 | 121 | 244 | 5.7e-09 | 63.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42693.t1 | G7J8D2 | 85.8 | 507 | 52 | 5 | 1 | 500 | 5 | 498 | 7.2e-223 | 782.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene42693.t1 | TF | RWP-RK |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42693.t1 | MTR_3g104830 | 86.588 | 507 | 48 | 5 | 1 | 500 | 5 | 498 | 0.0 | 874 |
| MS.gene42693.t1 | MTR_3g465110 | 51.439 | 556 | 189 | 14 | 1 | 499 | 10 | 541 | 2.23e-157 | 459 |
| MS.gene42693.t1 | MTR_5g024070 | 45.977 | 87 | 42 | 2 | 395 | 478 | 199 | 283 | 5.47e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42693.t1 | AT5G16100 | 31.599 | 269 | 135 | 9 | 260 | 484 | 177 | 440 | 8.22e-33 | 130 |
| MS.gene42693.t1 | AT5G66990 | 27.536 | 138 | 76 | 4 | 358 | 483 | 121 | 246 | 1.33e-11 | 65.5 |
Find 103 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCAACTCCATGATGATTT+TGG | 0.207331 | 3.3:+86245194 | None:intergenic |
| TACCTTTCTGTGAGGCCATC+TGG | 0.225388 | 3.3:+86243568 | None:intergenic |
| TTATTCGTATTGAAGAAAAT+TGG | 0.230661 | 3.3:+86245316 | None:intergenic |
| AATCTTATTCAAAATAATTC+AGG | 0.271712 | 3.3:-86244065 | MS.gene42693:intron |
| GGCAATACAATGGAATTAAA+TGG | 0.280054 | 3.3:+86245073 | None:intergenic |
| ACCACAATGTTTAATCATTT+CGG | 0.280881 | 3.3:+86243354 | None:intergenic |
| CACCATCAGATACCTGTTAA+TGG | 0.281140 | 3.3:-86244399 | MS.gene42693:CDS |
| TTTGAAAAGCTTGAGATTCA+TGG | 0.294484 | 3.3:-86244450 | MS.gene42693:CDS |
| TTGGATTGATGATATTAATA+TGG | 0.313839 | 3.3:-86244090 | MS.gene42693:CDS |
| CTTGGTGGTAGTAATAATAA+TGG | 0.330532 | 3.3:-86245103 | MS.gene42693:CDS |
| TCAGTCCTTGCCCTTGCCTC+TGG | 0.332263 | 3.3:+86243400 | None:intergenic |
| TCATATTGATCTTGAATCAT+TGG | 0.334359 | 3.3:+86244785 | None:intergenic |
| ACCATCAGATACCTGTTAAT+GGG | 0.352749 | 3.3:-86244398 | MS.gene42693:CDS |
| ACTGATGGGGCCCCATTAAC+AGG | 0.356308 | 3.3:+86244387 | None:intergenic |
| CAAACTCAGCATAACAATAA+TGG | 0.360613 | 3.3:-86245223 | MS.gene42693:CDS |
| TGATCTGCTGCTTCATCAAT+AGG | 0.368145 | 3.3:+86243650 | None:intergenic |
| CAAGAGCAAATGGGTGATAA+TGG | 0.372132 | 3.3:-86243881 | MS.gene42693:CDS |
| TACTACGGACTTGGAATACT+TGG | 0.382509 | 3.3:-86245121 | MS.gene42693:CDS |
| CTCTTTGCACTGGATTGGAT+TGG | 0.394071 | 3.3:-86244109 | MS.gene42693:CDS |
| TATTCGTATTGAAGAAAATT+GGG | 0.396664 | 3.3:+86245317 | None:intergenic |
| AAAACGGGAATCTGAATTGC+AGG | 0.401372 | 3.3:+86244671 | None:intergenic |
| GCCCATGTTGAATATATTCA+TGG | 0.402375 | 3.3:+86244915 | None:intergenic |
| TATTGTTATGCTGAGTTTGT+TGG | 0.403342 | 3.3:+86245227 | None:intergenic |
| GTTTAATCATTTCGGTTTGA+AGG | 0.403646 | 3.3:+86243362 | None:intergenic |
| TCAAATTACTAGCAAATCAA+TGG | 0.407732 | 3.3:-86243435 | MS.gene42693:CDS |
| TCGGTTTGGTTCAACAAAAC+GGG | 0.413527 | 3.3:+86244656 | None:intergenic |
| TTCGGTTTGGTTCAACAAAA+CGG | 0.419751 | 3.3:+86244655 | None:intergenic |
| GGTACTAAATTGAACATAAA+CGG | 0.419806 | 3.3:+86244950 | None:intergenic |
| GATTCTAAATTGTAAGCAAA+TGG | 0.423137 | 3.3:+86245022 | None:intergenic |
| GTAATTTGATCTGCTTCAAA+AGG | 0.424097 | 3.3:+86243449 | None:intergenic |
| TGAGACTCTTTGCACTGGAT+TGG | 0.424222 | 3.3:-86244114 | MS.gene42693:CDS |
| ATGAACTACCATCCACTTCA+AGG | 0.439320 | 3.3:+86244726 | None:intergenic |
| GAGGCAAGGGCAAGGACTGA+AGG | 0.455362 | 3.3:-86243397 | MS.gene42693:CDS |
| ATTGAAGAAAATTGGGTCAA+TGG | 0.457036 | 3.3:+86245324 | None:intergenic |
| ATTGTTATGCTGAGTTTGTT+GGG | 0.459786 | 3.3:+86245228 | None:intergenic |
| TTGATTAAGTGCTCGCAGTT+CGG | 0.465326 | 3.3:+86244637 | None:intergenic |
| AAGAAAACTTGTCGTAAAGC+AGG | 0.469657 | 3.3:-86243596 | MS.gene42693:CDS |
| GAGGATAAATCTACTAGTGT+TGG | 0.470059 | 3.3:+86245292 | None:intergenic |
| TAAGTGCTCGCAGTTCGGTT+TGG | 0.482116 | 3.3:+86244642 | None:intergenic |
| ACCTTTCTGTGAGGCCATCT+GGG | 0.484148 | 3.3:+86243569 | None:intergenic |
| CAAGAAAATTACTACGGACT+TGG | 0.487097 | 3.3:-86245130 | MS.gene42693:CDS |
| AGCAAATCAATGGGAAGGAC+AGG | 0.491125 | 3.3:-86243425 | MS.gene42693:CDS |
| AGTGGTGGAGCAAGAGCAAA+TGG | 0.500485 | 3.3:-86243891 | MS.gene42693:CDS |
| CAAATTACTAGCAAATCAAT+GGG | 0.500638 | 3.3:-86243434 | MS.gene42693:CDS |
| AGGCAAGGGCAAGGACTGAA+GGG | 0.501249 | 3.3:-86243396 | MS.gene42693:CDS |
| TATCGCTGCTGCGGCTAAAG+TGG | 0.502806 | 3.3:+86243289 | None:intergenic |
| CACCAAAATCATCATGGAGT+TGG | 0.510235 | 3.3:-86245196 | MS.gene42693:CDS |
| AGGATAAATCTACTAGTGTT+GGG | 0.516442 | 3.3:+86245293 | None:intergenic |
| TTACCACTCTGGTTCTGTTG+TGG | 0.520379 | 3.3:+86245052 | None:intergenic |
| TCAATCATTTGATAAACTGA+TGG | 0.522363 | 3.3:+86244372 | None:intergenic |
| AAGGACAGGATCCAGAGGCA+AGG | 0.525000 | 3.3:-86243411 | MS.gene42693:CDS |
| GTCTCATAAAATTCAGACAT+TGG | 0.526543 | 3.3:+86244131 | None:intergenic |
| CAATCATTTGATAAACTGAT+GGG | 0.528489 | 3.3:+86244373 | None:intergenic |
| CACCATGAATATATTCAACA+TGG | 0.530162 | 3.3:-86244917 | MS.gene42693:CDS |
| AACTGCGAGCACTTAATCAA+TGG | 0.531669 | 3.3:-86244634 | MS.gene42693:CDS |
| AGGACAGGATCCAGAGGCAA+GGG | 0.531756 | 3.3:-86243410 | MS.gene42693:CDS |
| TACGGACTTGGAATACTTGG+TGG | 0.531875 | 3.3:-86245118 | MS.gene42693:CDS |
| GCTTGAGATTCATGGAAGGT+TGG | 0.532570 | 3.3:-86244442 | MS.gene42693:CDS |
| TGGAATAAATAGCCTTGAAG+TGG | 0.539422 | 3.3:-86244738 | MS.gene42693:CDS |
| ACCCAGATGGCCTCACAGAA+AGG | 0.550518 | 3.3:-86243570 | MS.gene42693:intron |
| CTGCGGCTAAAGTGGCAAGA+AGG | 0.552292 | 3.3:+86243297 | None:intergenic |
| ATGGATCATTATTACCACTC+TGG | 0.558050 | 3.3:+86245041 | None:intergenic |
| AGTTTGTTGGGACGGTGCAG+TGG | 0.561780 | 3.3:+86245240 | None:intergenic |
| CCCCATTAACAGGTATCTGA+TGG | 0.567348 | 3.3:+86244397 | None:intergenic |
| GTAAAGCAGGGTTACCCAGA+TGG | 0.568095 | 3.3:-86243583 | MS.gene42693:CDS |
| TGTGTGGAACGTCATTTAGC+AGG | 0.571153 | 3.3:-86244173 | MS.gene42693:CDS |
| GTCCATGTTGTTGTACATCA+TGG | 0.572620 | 3.3:+86244843 | None:intergenic |
| TTATGCTGAGTTTGTTGGGA+CGG | 0.575049 | 3.3:+86245232 | None:intergenic |
| GGACCCCACCAAAATCATCA+TGG | 0.578955 | 3.3:-86245202 | MS.gene42693:CDS |
| AGAAAACTTGTCGTAAAGCA+GGG | 0.586540 | 3.3:-86243595 | MS.gene42693:CDS |
| TGGTAATACTGATTCATTTG+CGG | 0.586782 | 3.3:-86244888 | MS.gene42693:CDS |
| CGGCTAAAGTGGCAAGAAGG+CGG | 0.587716 | 3.3:+86243300 | None:intergenic |
| CACCATGATGTACAACAACA+TGG | 0.591982 | 3.3:-86244845 | MS.gene42693:CDS |
| TATGTTTACAGATGAAGTGG+TGG | 0.593177 | 3.3:-86243906 | MS.gene42693:intron |
| TGGGTGATAATGGAACGCTT+AGG | 0.600166 | 3.3:-86243871 | MS.gene42693:CDS |
| AGGATCCAGAGGCAAGGGCA+AGG | 0.602162 | 3.3:-86243405 | MS.gene42693:CDS |
| ATAAATAGCCTTGAAGTGGA+TGG | 0.603975 | 3.3:-86244734 | MS.gene42693:CDS |
| TCTTATGTTTACAGATGAAG+TGG | 0.605343 | 3.3:-86243909 | MS.gene42693:intron |
| GAAATGATTAAACATTGTGG+TGG | 0.607415 | 3.3:-86243352 | MS.gene42693:CDS |
| AAATAAGGGGTTACTGTGGG+TGG | 0.609956 | 3.3:+86244611 | None:intergenic |
| ACCGAAATGATTAAACATTG+TGG | 0.612061 | 3.3:-86243355 | MS.gene42693:CDS |
| CCATCAGATACCTGTTAATG+GGG | 0.617286 | 3.3:-86244397 | MS.gene42693:CDS |
| AAAAGCTTGAGATTCATGGA+AGG | 0.617730 | 3.3:-86244446 | MS.gene42693:CDS |
| GCGATGTCATACAATGCGGT+TGG | 0.617991 | 3.3:+86243322 | None:intergenic |
| GGCAAGGGCAAGGACTGAAG+GGG | 0.618518 | 3.3:-86243395 | MS.gene42693:CDS |
| TTACTAGCAAATCAATGGGA+AGG | 0.619972 | 3.3:-86243430 | MS.gene42693:CDS |
| CATCATATTCAACACGTGCA+TGG | 0.626121 | 3.3:-86244986 | MS.gene42693:CDS |
| CCATCCCAAGAAAATTACTA+CGG | 0.628814 | 3.3:-86245136 | MS.gene42693:CDS |
| CAACAACATGGACATGGACA+TGG | 0.630152 | 3.3:-86244833 | MS.gene42693:CDS |
| AGAGAAATCATACACACTGA+TGG | 0.630751 | 3.3:-86244566 | MS.gene42693:intron |
| ACCATGAATATATTCAACAT+GGG | 0.632720 | 3.3:-86244916 | MS.gene42693:CDS |
| TATATTCAACATGGGCTGAG+TGG | 0.633573 | 3.3:-86244908 | MS.gene42693:CDS |
| GTTTGTTGGGACGGTGCAGT+GGG | 0.641780 | 3.3:+86245241 | None:intergenic |
| ATATTATTACTTGTTCTGAG+AGG | 0.643167 | 3.3:+86243846 | None:intergenic |
| GATGTACAACAACATGGACA+TGG | 0.659086 | 3.3:-86244839 | MS.gene42693:CDS |
| GTTCTGTTGTGGCAATACAA+TGG | 0.661300 | 3.3:+86245063 | None:intergenic |
| AAGACATTTACCTTTCTGTG+AGG | 0.662932 | 3.3:+86243560 | None:intergenic |
| ATGGGAAGGACAGGATCCAG+AGG | 0.682760 | 3.3:-86243416 | MS.gene42693:CDS |
| AATCATTTGATAAACTGATG+GGG | 0.687280 | 3.3:+86244374 | None:intergenic |
| GTGGTGGAGCAAGAGCAAAT+GGG | 0.694143 | 3.3:-86243890 | MS.gene42693:CDS |
| CATATTCAACACGTGCATGG+TGG | 0.700121 | 3.3:-86244983 | MS.gene42693:CDS |
| TTGCCACAACAGAACCAGAG+TGG | 0.723246 | 3.3:-86245055 | MS.gene42693:CDS |
| GGCGGCGATGTCATACAATG+CGG | 0.751866 | 3.3:+86243318 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACAATAATAATTTTTCATT+TGG | - | chr3.3:86243909-86243928 | MS.gene42693:intron | 10.0% |
| !! | AATCTTATTCAAAATAATTC+AGG | - | chr3.3:86244602-86244621 | MS.gene42693:CDS | 15.0% |
| !! | ATATCAAAATAATAGAAACA+TGG | + | chr3.3:86244164-86244183 | None:intergenic | 15.0% |
| !! | TATCAAAATAATAGAAACAT+GGG | + | chr3.3:86244163-86244182 | None:intergenic | 15.0% |
| !!! | ATTGTTGTTATTTTTATCAA+TGG | + | chr3.3:86243400-86243419 | None:intergenic | 15.0% |
| !! | GATAAAAATAACAACAATGT+GGG | - | chr3.3:86243402-86243421 | MS.gene42693:CDS | 20.0% |
| !! | TATTCGTATTGAAGAAAATT+GGG | + | chr3.3:86243353-86243372 | None:intergenic | 20.0% |
| !! | TGATAAAAATAACAACAATG+TGG | - | chr3.3:86243401-86243420 | MS.gene42693:CDS | 20.0% |
| !! | TTATTCGTATTGAAGAAAAT+TGG | + | chr3.3:86243354-86243373 | None:intergenic | 20.0% |
| !!! | AAAAATTCTTTATTTCACCA+AGG | + | chr3.3:86244463-86244482 | None:intergenic | 20.0% |
| !!! | TGGTGAAATAAAGAATTTTT+TGG | - | chr3.3:86244463-86244482 | MS.gene42693:intron | 20.0% |
| !!! | TTGGATTGATGATATTAATA+TGG | - | chr3.3:86244577-86244596 | MS.gene42693:CDS | 20.0% |
| ! | AATCATTTGATAAACTGATG+GGG | + | chr3.3:86244296-86244315 | None:intergenic | 25.0% |
| ! | ACCACAATGTTTAATCATTT+CGG | + | chr3.3:86245316-86245335 | None:intergenic | 25.0% |
| ! | ACCATGAATATATTCAACAT+GGG | - | chr3.3:86243751-86243770 | MS.gene42693:intron | 25.0% |
| ! | CAAATTACTAGCAAATCAAT+GGG | - | chr3.3:86245233-86245252 | MS.gene42693:CDS | 25.0% |
| ! | CAATCATTTGATAAACTGAT+GGG | + | chr3.3:86244297-86244316 | None:intergenic | 25.0% |
| ! | GATTCTAAATTGTAAGCAAA+TGG | + | chr3.3:86243648-86243667 | None:intergenic | 25.0% |
| ! | GGTACTAAATTGAACATAAA+CGG | + | chr3.3:86243720-86243739 | None:intergenic | 25.0% |
| ! | TCAAATTACTAGCAAATCAA+TGG | - | chr3.3:86245232-86245251 | MS.gene42693:CDS | 25.0% |
| ! | TCAATCATTTGATAAACTGA+TGG | + | chr3.3:86244298-86244317 | None:intergenic | 25.0% |
| ! | TCATATTGATCTTGAATCAT+TGG | + | chr3.3:86243885-86243904 | None:intergenic | 25.0% |
| ! | TCTTGTGTGTTATACTTATT+TGG | - | chr3.3:86245130-86245149 | MS.gene42693:CDS | 25.0% |
| !! | AACTTTTGTAACAGTTTTTG+TGG | - | chr3.3:86244431-86244450 | MS.gene42693:CDS | 25.0% |
| !! | ACTTTTGTAACAGTTTTTGT+GGG | - | chr3.3:86244432-86244451 | MS.gene42693:CDS | 25.0% |
| !! | ATATATTCATGGTGATTTTC+TGG | + | chr3.3:86243744-86243763 | None:intergenic | 25.0% |
| !! | ATATTATTACTTGTTCTGAG+AGG | + | chr3.3:86244824-86244843 | None:intergenic | 25.0% |
| !! | CTTTTTATTCATGTGACATT+GGG | - | chr3.3:86244720-86244739 | MS.gene42693:CDS | 25.0% |
| !! | TCTTTTTATTCATGTGACAT+TGG | - | chr3.3:86244719-86244738 | MS.gene42693:CDS | 25.0% |
| !! | TGAATATGATGATCATTTTC+TGG | + | chr3.3:86243672-86243691 | None:intergenic | 25.0% |
| !!! | GTTGTTATTTTTATCAATGG+AGG | + | chr3.3:86243397-86243416 | None:intergenic | 25.0% |
| ACAACAACTGCAAAAATAAG+GGG | + | chr3.3:86244072-86244091 | None:intergenic | 30.0% | |
| ACCGAAATGATTAAACATTG+TGG | - | chr3.3:86245312-86245331 | MS.gene42693:CDS | 30.0% | |
| AGGATAAATCTACTAGTGTT+GGG | + | chr3.3:86243377-86243396 | None:intergenic | 30.0% | |
| ATTGAAGAAAATTGGGTCAA+TGG | + | chr3.3:86243346-86243365 | None:intergenic | 30.0% | |
| CAAACTCAGCATAACAATAA+TGG | - | chr3.3:86243444-86243463 | MS.gene42693:CDS | 30.0% | |
| CACCATGAATATATTCAACA+TGG | - | chr3.3:86243750-86243769 | MS.gene42693:intron | 30.0% | |
| GAAATGATTAAACATTGTGG+TGG | - | chr3.3:86245315-86245334 | MS.gene42693:CDS | 30.0% | |
| GACAACAACTGCAAAAATAA+GGG | + | chr3.3:86244073-86244092 | None:intergenic | 30.0% | |
| GGCAATACAATGGAATTAAA+TGG | + | chr3.3:86243597-86243616 | None:intergenic | 30.0% | |
| GTAATTTGATCTGCTTCAAA+AGG | + | chr3.3:86245221-86245240 | None:intergenic | 30.0% | |
| GTCTCATAAAATTCAGACAT+TGG | + | chr3.3:86244539-86244558 | None:intergenic | 30.0% | |
| TATTGTTATGCTGAGTTTGT+TGG | + | chr3.3:86243443-86243462 | None:intergenic | 30.0% | |
| TCTTATGTTTACAGATGAAG+TGG | - | chr3.3:86244758-86244777 | MS.gene42693:CDS | 30.0% | |
| TGACAACAACTGCAAAAATA+AGG | + | chr3.3:86244074-86244093 | None:intergenic | 30.0% | |
| TGTAGTACTATACTAAGACT+TGG | + | chr3.3:86244329-86244348 | None:intergenic | 30.0% | |
| TGTGTCTTAATATTAACCAC+AGG | - | chr3.3:86245188-86245207 | MS.gene42693:CDS | 30.0% | |
| TTCCTCTGTTCAATACAATA+GGG | + | chr3.3:86244948-86244967 | None:intergenic | 30.0% | |
| TTTCCTCTGTTCAATACAAT+AGG | + | chr3.3:86244949-86244968 | None:intergenic | 30.0% | |
| TTTGAAAAGCTTGAGATTCA+TGG | - | chr3.3:86244217-86244236 | MS.gene42693:CDS | 30.0% | |
| ! | AAAATAATTCAGGTTTGTCC+TGG | - | chr3.3:86244612-86244631 | MS.gene42693:CDS | 30.0% |
| ! | AAGTCCGTAGTAATTTTCTT+GGG | + | chr3.3:86243538-86243557 | None:intergenic | 30.0% |
| ! | ATTGTTATGCTGAGTTTGTT+GGG | + | chr3.3:86243442-86243461 | None:intergenic | 30.0% |
| ! | CTTGGTGGTAGTAATAATAA+TGG | - | chr3.3:86243564-86243583 | MS.gene42693:intron | 30.0% |
| ! | GTTTAATCATTTCGGTTTGA+AGG | + | chr3.3:86245308-86245327 | None:intergenic | 30.0% |
| !! | TGGTAATACTGATTCATTTG+CGG | - | chr3.3:86243779-86243798 | MS.gene42693:intron | 30.0% |
| AAAAGCTTGAGATTCATGGA+AGG | - | chr3.3:86244221-86244240 | MS.gene42693:CDS | 35.0% | |
| AAGAAAACTTGTCGTAAAGC+AGG | - | chr3.3:86245071-86245090 | MS.gene42693:CDS | 35.0% | |
| AAGACATTTACCTTTCTGTG+AGG | + | chr3.3:86245110-86245129 | None:intergenic | 35.0% | |
| ACCATCAGATACCTGTTAAT+GGG | - | chr3.3:86244269-86244288 | MS.gene42693:intron | 35.0% | |
| AGAAAACTTGTCGTAAAGCA+GGG | - | chr3.3:86245072-86245091 | MS.gene42693:CDS | 35.0% | |
| AGAGAAATCATACACACTGA+TGG | - | chr3.3:86244101-86244120 | MS.gene42693:CDS | 35.0% | |
| ATGGATCATTATTACCACTC+TGG | + | chr3.3:86243629-86243648 | None:intergenic | 35.0% | |
| CAAAAATAAGGGGTTACTGT+GGG | + | chr3.3:86244062-86244081 | None:intergenic | 35.0% | |
| CAAGAAAATTACTACGGACT+TGG | - | chr3.3:86243537-86243556 | MS.gene42693:intron | 35.0% | |
| CCATCCCAAGAAAATTACTA+CGG | - | chr3.3:86243531-86243550 | MS.gene42693:intron | 35.0% | |
| GACATTGGGTTAAGTTTGAA+TGG | - | chr3.3:86244734-86244753 | MS.gene42693:CDS | 35.0% | |
| GAGGATAAATCTACTAGTGT+TGG | + | chr3.3:86243378-86243397 | None:intergenic | 35.0% | |
| GCCCATGTTGAATATATTCA+TGG | + | chr3.3:86243755-86243774 | None:intergenic | 35.0% | |
| TACCCTATTGTATTGAACAG+AGG | - | chr3.3:86244943-86244962 | MS.gene42693:CDS | 35.0% | |
| TATGTTTACAGATGAAGTGG+TGG | - | chr3.3:86244761-86244780 | MS.gene42693:CDS | 35.0% | |
| TTACTAGCAAATCAATGGGA+AGG | - | chr3.3:86245237-86245256 | MS.gene42693:CDS | 35.0% | |
| ! | ATAAATAGCCTTGAAGTGGA+TGG | - | chr3.3:86243933-86243952 | MS.gene42693:intron | 35.0% |
| ! | CAAGTCCGTAGTAATTTTCT+TGG | + | chr3.3:86243539-86243558 | None:intergenic | 35.0% |
| ! | CAAGTTTTCTTGAGAACTGT+TGG | + | chr3.3:86245062-86245081 | None:intergenic | 35.0% |
| ! | TAGTAATTTTCTTGGGATGG+TGG | + | chr3.3:86243531-86243550 | None:intergenic | 35.0% |
| ! | TATTCATGGTGATTTTCTGG+CGG | + | chr3.3:86243741-86243760 | None:intergenic | 35.0% |
| ! | TGGAATAAATAGCCTTGAAG+TGG | - | chr3.3:86243929-86243948 | MS.gene42693:intron | 35.0% |
| ! | TTCCAACTCCATGATGATTT+TGG | + | chr3.3:86243476-86243495 | None:intergenic | 35.0% |
| ! | TTTTATGAGACTCTTTGCAC+TGG | - | chr3.3:86244548-86244567 | MS.gene42693:intron | 35.0% |
| !! | AACTCCATGATGATTTTGGT+GGG | + | chr3.3:86243472-86243491 | None:intergenic | 35.0% |
| !! | TTCGGTTTGGTTCAACAAAA+CGG | + | chr3.3:86244015-86244034 | None:intergenic | 35.0% |
| AAAACGGGAATCTGAATTGC+AGG | + | chr3.3:86243999-86244018 | None:intergenic | 40.0% | |
| AACTGCGAGCACTTAATCAA+TGG | - | chr3.3:86244033-86244052 | MS.gene42693:intron | 40.0% | |
| ATGAACTACCATCCACTTCA+AGG | + | chr3.3:86243944-86243963 | None:intergenic | 40.0% | |
| CAAGAGCAAATGGGTGATAA+TGG | - | chr3.3:86244786-86244805 | MS.gene42693:CDS | 40.0% | |
| CACCAAAATCATCATGGAGT+TGG | - | chr3.3:86243471-86243490 | MS.gene42693:intron | 40.0% | |
| CACCATCAGATACCTGTTAA+TGG | - | chr3.3:86244268-86244287 | MS.gene42693:intron | 40.0% | |
| CACCATGATGTACAACAACA+TGG | - | chr3.3:86243822-86243841 | MS.gene42693:intron | 40.0% | |
| CATCATATTCAACACGTGCA+TGG | - | chr3.3:86243681-86243700 | MS.gene42693:CDS | 40.0% | |
| CCATCAGATACCTGTTAATG+GGG | - | chr3.3:86244270-86244289 | MS.gene42693:intron | 40.0% | |
| GATGTACAACAACATGGACA+TGG | - | chr3.3:86243828-86243847 | MS.gene42693:intron | 40.0% | |
| GCAAAAATAAGGGGTTACTG+TGG | + | chr3.3:86244063-86244082 | None:intergenic | 40.0% | |
| GTCCATGTTGTTGTACATCA+TGG | + | chr3.3:86243827-86243846 | None:intergenic | 40.0% | |
| GTTCTGTTGTGGCAATACAA+TGG | + | chr3.3:86243607-86243626 | None:intergenic | 40.0% | |
| TACTACGGACTTGGAATACT+TGG | - | chr3.3:86243546-86243565 | MS.gene42693:intron | 40.0% | |
| TTGATTAAGTGCTCGCAGTT+CGG | + | chr3.3:86244033-86244052 | None:intergenic | 40.0% | |
| ! | AGTTTTTGTGGGAAAAGCCT+TGG | - | chr3.3:86244443-86244462 | MS.gene42693:CDS | 40.0% |
| ! | CAACTCCATGATGATTTTGG+TGG | + | chr3.3:86243473-86243492 | None:intergenic | 40.0% |
| ! | CCGTAGTAATTTTCTTGGGA+TGG | + | chr3.3:86243534-86243553 | None:intergenic | 40.0% |
| ! | TATATTCAACATGGGCTGAG+TGG | - | chr3.3:86243759-86243778 | MS.gene42693:intron | 40.0% |
| ! | TGATCTGCTGCTTCATCAAT+AGG | + | chr3.3:86245020-86245039 | None:intergenic | 40.0% |
| ! | TTCAAAAGGCTTTTCACCTG+TGG | + | chr3.3:86245207-86245226 | None:intergenic | 40.0% |
| !! | ACTCCATGATGATTTTGGTG+GGG | + | chr3.3:86243471-86243490 | None:intergenic | 40.0% |
| !! | TCGGTTTGGTTCAACAAAAC+GGG | + | chr3.3:86244014-86244033 | None:intergenic | 40.0% |
| !! | TTATGCTGAGTTTGTTGGGA+CGG | + | chr3.3:86243438-86243457 | None:intergenic | 40.0% |
| !!! | TTTTTTGGCACAGTACTGTG+TGG | - | chr3.3:86244478-86244497 | MS.gene42693:intron | 40.0% |
| AAATAAGGGGTTACTGTGGG+TGG | + | chr3.3:86244059-86244078 | None:intergenic | 45.0% | |
| AGCAAATCAATGGGAAGGAC+AGG | - | chr3.3:86245242-86245261 | MS.gene42693:CDS | 45.0% | |
| CAACAACATGGACATGGACA+TGG | - | chr3.3:86243834-86243853 | MS.gene42693:intron | 45.0% | |
| CATATTCAACACGTGCATGG+TGG | - | chr3.3:86243684-86243703 | MS.gene42693:CDS | 45.0% | |
| CCCCATTAACAGGTATCTGA+TGG | + | chr3.3:86244273-86244292 | None:intergenic | 45.0% | |
| GCTTGAGATTCATGGAAGGT+TGG | - | chr3.3:86244225-86244244 | MS.gene42693:CDS | 45.0% | |
| GTTTGTCCTGGAAATCACGA+CGG | - | chr3.3:86244624-86244643 | MS.gene42693:CDS | 45.0% | |
| TACGGACTTGGAATACTTGG+TGG | - | chr3.3:86243549-86243568 | MS.gene42693:intron | 45.0% | |
| TGAGACTCTTTGCACTGGAT+TGG | - | chr3.3:86244553-86244572 | MS.gene42693:intron | 45.0% | |
| TGTGTGGAACGTCATTTAGC+AGG | - | chr3.3:86244494-86244513 | MS.gene42693:intron | 45.0% | |
| ! | CTCTTTGCACTGGATTGGAT+TGG | - | chr3.3:86244558-86244577 | MS.gene42693:intron | 45.0% |
| !! | TGGGTGATAATGGAACGCTT+AGG | - | chr3.3:86244796-86244815 | MS.gene42693:CDS | 45.0% |
| !! | TTACCACTCTGGTTCTGTTG+TGG | + | chr3.3:86243618-86243637 | None:intergenic | 45.0% |
| !!! | ATTTTCTTGGGATGGTGGAG+TGG | + | chr3.3:86243526-86243545 | None:intergenic | 45.0% |
| !! | TATTTATTTGAATTATTTAT+AGG | - | chr3.3:86244187-86244206 | MS.gene42693:CDS | 5.0% |
| ACCTTTCTGTGAGGCCATCT+GGG | + | chr3.3:86245101-86245120 | None:intergenic | 50.0% | |
| CCTGGAAATCACGACGGAAA+AGG | - | chr3.3:86244630-86244649 | MS.gene42693:CDS | 50.0% | |
| GCGATGTCATACAATGCGGT+TGG | + | chr3.3:86245348-86245367 | None:intergenic | 50.0% | |
| GGACCCCACCAAAATCATCA+TGG | - | chr3.3:86243465-86243484 | MS.gene42693:intron | 50.0% | |
| GTAAAGCAGGGTTACCCAGA+TGG | - | chr3.3:86245084-86245103 | MS.gene42693:CDS | 50.0% | |
| TAAGTGCTCGCAGTTCGGTT+TGG | + | chr3.3:86244028-86244047 | None:intergenic | 50.0% | |
| TACCTTTCTGTGAGGCCATC+TGG | + | chr3.3:86245102-86245121 | None:intergenic | 50.0% | |
| TTGCCACAACAGAACCAGAG+TGG | - | chr3.3:86243612-86243631 | MS.gene42693:CDS | 50.0% | |
| ! | AGTGGTGGAGCAAGAGCAAA+TGG | - | chr3.3:86244776-86244795 | MS.gene42693:CDS | 50.0% |
| ! | CCTTTTCCGTCGTGATTTCC+AGG | + | chr3.3:86244633-86244652 | None:intergenic | 50.0% |
| ! | GTGGTGGAGCAAGAGCAAAT+GGG | - | chr3.3:86244777-86244796 | MS.gene42693:CDS | 50.0% |
| AAGGACAGGATCCAGAGGCA+AGG | - | chr3.3:86245256-86245275 | MS.gene42693:CDS | 55.0% | |
| ACCCAGATGGCCTCACAGAA+AGG | - | chr3.3:86245097-86245116 | MS.gene42693:CDS | 55.0% | |
| ACTGATGGGGCCCCATTAAC+AGG | + | chr3.3:86244283-86244302 | None:intergenic | 55.0% | |
| AGGACAGGATCCAGAGGCAA+GGG | - | chr3.3:86245257-86245276 | MS.gene42693:CDS | 55.0% | |
| AGGCAAGGGCAAGGACTGAA+GGG | - | chr3.3:86245271-86245290 | MS.gene42693:CDS | 55.0% | |
| ATGGGAAGGACAGGATCCAG+AGG | - | chr3.3:86245251-86245270 | MS.gene42693:CDS | 55.0% | |
| GGCGGCGATGTCATACAATG+CGG | + | chr3.3:86245352-86245371 | None:intergenic | 55.0% | |
| ! | GTTTGTTGGGACGGTGCAGT+GGG | + | chr3.3:86243429-86243448 | None:intergenic | 55.0% |
| !! | AGTTTGTTGGGACGGTGCAG+TGG | + | chr3.3:86243430-86243449 | None:intergenic | 55.0% |
| AGGATCCAGAGGCAAGGGCA+AGG | - | chr3.3:86245262-86245281 | MS.gene42693:CDS | 60.0% | |
| GAGGCAAGGGCAAGGACTGA+AGG | - | chr3.3:86245270-86245289 | MS.gene42693:CDS | 60.0% | |
| GGCAAGGGCAAGGACTGAAG+GGG | - | chr3.3:86245272-86245291 | MS.gene42693:CDS | 60.0% | |
| TCAGTCCTTGCCCTTGCCTC+TGG | + | chr3.3:86245270-86245289 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 86243303 | 86245386 | 86243303 | ID=MS.gene42693 |
| chr3.3 | mRNA | 86243303 | 86245386 | 86243303 | ID=MS.gene42693.t1;Parent=MS.gene42693 |
| chr3.3 | exon | 86244567 | 86245386 | 86244567 | ID=MS.gene42693.t1.exon1;Parent=MS.gene42693.t1 |
| chr3.3 | CDS | 86244567 | 86245386 | 86244567 | ID=cds.MS.gene42693.t1;Parent=MS.gene42693.t1 |
| chr3.3 | exon | 86244372 | 86244480 | 86244372 | ID=MS.gene42693.t1.exon2;Parent=MS.gene42693.t1 |
| chr3.3 | CDS | 86244372 | 86244480 | 86244372 | ID=cds.MS.gene42693.t1;Parent=MS.gene42693.t1 |
| chr3.3 | exon | 86244066 | 86244244 | 86244066 | ID=MS.gene42693.t1.exon3;Parent=MS.gene42693.t1 |
| chr3.3 | CDS | 86244066 | 86244244 | 86244066 | ID=cds.MS.gene42693.t1;Parent=MS.gene42693.t1 |
| chr3.3 | exon | 86243856 | 86243917 | 86243856 | ID=MS.gene42693.t1.exon4;Parent=MS.gene42693.t1 |
| chr3.3 | CDS | 86243856 | 86243917 | 86243856 | ID=cds.MS.gene42693.t1;Parent=MS.gene42693.t1 |
| chr3.3 | exon | 86243571 | 86243726 | 86243571 | ID=MS.gene42693.t1.exon5;Parent=MS.gene42693.t1 |
| chr3.3 | CDS | 86243571 | 86243726 | 86243571 | ID=cds.MS.gene42693.t1;Parent=MS.gene42693.t1 |
| chr3.3 | exon | 86243303 | 86243479 | 86243303 | ID=MS.gene42693.t1.exon6;Parent=MS.gene42693.t1 |
| chr3.3 | CDS | 86243303 | 86243479 | 86243303 | ID=cds.MS.gene42693.t1;Parent=MS.gene42693.t1 |
| Gene Sequence |
| Protein sequence |
