AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene42832

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene42832.t1 MTR_2g093810 94.671 319 16 1 1 319 1 318 0.0 612
MS.gene42832.t1 MTR_7g100990 51.890 291 128 3 10 299 7 286 4.63e-96 287
MS.gene42832.t1 MTR_5g041940 52.610 249 109 5 14 260 3 244 1.86e-82 250
MS.gene42832.t1 MTR_4g081870 65.896 173 57 1 8 180 3 173 4.14e-80 244
MS.gene42832.t1 MTR_2g080010 65.432 162 49 1 14 168 15 176 2.60e-79 245
MS.gene42832.t1 MTR_7g085220 69.048 168 42 5 14 172 8 174 1.09e-78 243
MS.gene42832.t1 MTR_4g089135 63.842 177 45 2 14 171 15 191 3.12e-78 242
MS.gene42832.t1 MTR_2157s0010 67.081 161 47 2 14 168 8 168 7.53e-77 236
MS.gene42832.t1 MTR_3g088110 62.130 169 60 2 10 178 3 167 1.20e-72 226
MS.gene42832.t1 MTR_8g094580 55.135 185 73 2 14 191 7 188 1.04e-70 221
MS.gene42832.t1 MTR_2g079990 59.146 164 61 2 10 173 12 169 2.27e-67 215
MS.gene42832.t1 MTR_8g059170 61.728 162 58 2 10 171 10 167 8.04e-66 210
MS.gene42832.t1 MTR_3g096920 60.645 155 57 2 14 168 7 157 5.55e-65 206
MS.gene42832.t1 MTR_2g079990 51.596 188 65 2 10 173 12 197 6.45e-63 204
MS.gene42832.t1 MTR_5g040420 51.744 172 79 2 1 168 1 172 3.97e-59 194
MS.gene42832.t1 MTR_3g096920 48.691 191 59 2 14 168 7 194 2.83e-58 191
MS.gene42832.t1 MTR_8g467490 51.445 173 79 2 1 168 1 173 5.05e-57 189
MS.gene42832.t1 MTR_6g011860 49.438 178 84 2 16 188 17 193 2.73e-55 184
MS.gene42832.t1 MTR_3g109340 46.305 203 102 4 4 205 13 209 6.79e-54 180
MS.gene42832.t1 MTR_3g109340 46.305 203 101 4 4 205 13 208 2.10e-53 179
MS.gene42832.t1 MTR_6g477900 49.405 168 77 3 14 179 6 167 2.45e-53 175
MS.gene42832.t1 MTR_1g008740 46.860 207 88 5 1 203 1 189 3.88e-53 178
MS.gene42832.t1 MTR_1g008740 46.860 207 88 5 1 203 15 203 4.00e-53 178
MS.gene42832.t1 MTR_2g064090 47.953 171 82 3 13 181 5 170 4.28e-53 177
MS.gene42832.t1 MTR_2g078700 55.484 155 67 1 14 168 23 175 5.54e-53 178
MS.gene42832.t1 MTR_6g012670 51.190 168 78 2 8 175 14 177 1.94e-52 175
MS.gene42832.t1 MTR_6g084430 51.875 160 69 2 14 173 5 156 5.22e-52 174
MS.gene42832.t1 MTR_7g005280 54.605 152 60 2 14 165 15 157 1.25e-51 171
MS.gene42832.t1 MTR_4g108760 50.909 165 67 3 14 173 17 172 1.84e-50 171
MS.gene42832.t1 MTR_4g134460 53.333 150 63 3 16 165 56 198 5.51e-50 172
MS.gene42832.t1 MTR_5g076850 52.121 165 65 4 13 172 5 160 7.07e-50 176
MS.gene42832.t1 MTR_3g435150 50.909 165 77 3 9 173 11 171 8.51e-50 168
MS.gene42832.t1 MTR_7g085260 49.112 169 82 3 7 173 10 176 9.36e-50 170
MS.gene42832.t1 MTR_2g062730 45.550 191 92 4 13 200 9 190 2.78e-49 167
MS.gene42832.t1 MTR_1g069805 45.455 176 88 2 13 188 9 176 3.05e-49 166
MS.gene42832.t1 MTR_4g036030 49.123 171 70 5 15 178 8 168 8.27e-49 166
MS.gene42832.t1 MTR_5g090970 47.458 177 87 3 16 186 20 196 9.54e-49 165
MS.gene42832.t1 MTR_3g064580 50.617 162 73 4 13 172 5 161 4.44e-48 171
MS.gene42832.t1 MTR_8g024480 47.929 169 78 3 15 175 16 182 6.39e-48 166
MS.gene42832.t1 MTR_8g099750 51.948 154 69 3 14 165 14 164 1.16e-47 160
MS.gene42832.t1 MTR_4g075980 39.485 233 119 4 16 239 17 236 1.40e-47 162
MS.gene42832.t1 MTR_3g070030 50.311 161 76 3 14 173 19 176 1.62e-47 163
MS.gene42832.t1 MTR_4g035590 50.000 164 70 3 8 168 2 156 3.46e-47 162
MS.gene42832.t1 MTR_8g076110 45.349 172 83 3 15 183 7 170 3.69e-47 161
MS.gene42832.t1 MTR_4g098630 45.810 179 88 4 13 187 5 178 5.33e-47 161
MS.gene42832.t1 MTR_6g032770 47.337 169 83 3 1 165 1 167 7.75e-47 162
MS.gene42832.t1 MTR_7g097090 49.020 153 70 2 13 165 9 153 9.67e-47 159
MS.gene42832.t1 MTR_8g094580 53.676 136 53 2 63 191 2 134 1.53e-46 157
MS.gene42832.t1 MTR_5g090970 47.429 175 85 4 16 184 20 193 2.71e-46 159
MS.gene42832.t1 MTR_3g116070 55.224 134 59 1 9 141 18 151 3.09e-46 160
MS.gene42832.t1 MTR_5g021710 49.045 157 69 3 15 168 9 157 3.22e-46 160
MS.gene42832.t1 MTR_4g101680 44.186 172 84 4 15 182 8 171 4.03e-46 160
MS.gene42832.t1 MTR_2g068880 46.988 166 78 4 16 171 24 189 4.90e-46 158
MS.gene42832.t1 MTR_1g096430 49.045 157 69 3 15 168 8 156 6.62e-46 159
MS.gene42832.t1 MTR_2g068920 46.429 168 80 5 16 173 23 190 8.68e-46 157
MS.gene42832.t1 MTR_5g012080 48.428 159 69 4 15 168 8 158 1.45e-45 158
MS.gene42832.t1 MTR_5g014300 46.012 163 74 3 13 168 5 160 7.41e-45 156
MS.gene42832.t1 MTR_2g064470 48.026 152 72 3 14 165 11 155 1.12e-44 154
MS.gene42832.t1 MTR_3g098810 50.314 159 73 4 14 168 14 170 6.76e-43 148
MS.gene42832.t1 MTR_7g011120 41.327 196 100 3 14 196 8 201 3.49e-42 148
MS.gene42832.t1 MTR_3g096140 45.806 155 76 4 16 168 9 157 7.99e-42 146
MS.gene42832.t1 MTR_1g097300 52.344 128 57 2 16 141 21 146 1.07e-41 152
MS.gene42832.t1 MTR_7g011130 41.270 189 90 3 14 183 19 205 2.17e-41 147
MS.gene42832.t1 MTR_3g096140 45.806 155 76 4 16 168 9 157 3.68e-41 147
MS.gene42832.t1 MTR_1g090720 46.875 160 79 3 13 168 41 198 5.97e-41 149
MS.gene42832.t1 MTR_3g098810 52.555 137 61 2 14 148 14 148 5.38e-40 138
MS.gene42832.t1 MTR_5g069030 45.251 179 85 6 14 186 25 196 1.71e-39 147
MS.gene42832.t1 MTR_2g086880 46.053 152 68 3 16 166 20 158 1.83e-39 145
MS.gene42832.t1 MTR_2g086880 46.053 152 68 3 16 166 20 158 2.20e-39 146
MS.gene42832.t1 MTR_1g090723 41.711 187 89 7 16 189 10 189 2.99e-39 146
MS.gene42832.t1 MTR_3g093050 45.251 179 85 6 13 185 21 192 4.30e-39 145
MS.gene42832.t1 MTR_3g093050 45.251 179 85 6 13 185 21 192 4.69e-39 145
MS.gene42832.t1 MTR_8g063550 43.871 155 79 4 16 168 8 156 1.76e-38 139
MS.gene42832.t1 MTR_1g090723 41.176 187 89 7 16 189 10 188 1.90e-38 143
MS.gene42832.t1 MTR_1g090723 41.176 187 89 7 16 189 10 188 2.77e-38 143
MS.gene42832.t1 MTR_8g063550 43.871 155 79 4 16 168 8 156 2.85e-38 140
MS.gene42832.t1 MTR_8g063550 43.871 155 79 4 16 168 8 156 3.84e-38 140
MS.gene42832.t1 MTR_3g093040 41.081 185 90 5 10 185 104 278 2.49e-37 135
MS.gene42832.t1 MTR_3g070040 44.720 161 83 3 14 173 8 163 6.56e-37 135
MS.gene42832.t1 MTR_8g093580 42.581 155 81 4 16 168 8 156 8.92e-37 137
MS.gene42832.t1 MTR_0036s0150 40.323 186 92 6 16 189 7 185 1.17e-36 138
MS.gene42832.t1 MTR_8g023840 44.937 158 74 5 11 165 8 155 1.01e-35 133
MS.gene42832.t1 MTR_4g052620 45.283 159 76 5 14 165 5 159 1.35e-35 129
MS.gene42832.t1 MTR_7g105170 40.719 167 91 4 14 173 4 169 2.56e-34 126
MS.gene42832.t1 MTR_4g094302 37.580 157 88 2 14 168 11 159 1.13e-33 122
MS.gene42832.t1 MTR_4g094302 40.625 128 68 1 14 141 11 130 1.66e-32 118
MS.gene42832.t1 MTR_3g096140 42.958 142 73 4 29 168 1 136 3.92e-32 122
MS.gene42832.t1 MTR_8g023860 42.857 154 75 5 15 165 13 156 1.03e-31 122
MS.gene42832.t1 MTR_2g086690 42.138 159 80 5 15 165 5 159 1.25e-31 119
MS.gene42832.t1 MTR_8g023900 41.463 164 78 6 13 168 187 340 5.15e-31 121
MS.gene42832.t1 MTR_8g023900 38.372 172 86 6 14 178 12 170 6.63e-30 118
MS.gene42832.t1 MTR_8g023930 37.778 180 98 5 14 180 24 202 1.18e-30 120
MS.gene42832.t1 MTR_8g093790 37.654 162 75 5 7 168 3 138 2.82e-27 105
MS.gene42832.t1 MTR_7g070140 56.000 75 33 0 67 141 17 91 1.55e-23 94.4
MS.gene42832.t1 MTR_3g096400 35.976 164 81 8 14 165 7 158 1.71e-21 90.9
MS.gene42832.t1 MTR_8g023880 34.228 149 78 5 9 140 2 147 2.93e-20 89.0
MS.gene42832.t1 MTR_7g083330 27.711 166 112 5 8 169 12 173 1.99e-15 73.9
MS.gene42832.t1 MTR_7g083360 31.250 128 82 4 14 139 10 133 2.81e-15 72.4
MS.gene42832.t1 MTR_1g045470 31.667 180 98 9 22 188 13 180 8.23e-13 68.6
MS.gene42832.t1 MTR_7g070150 45.763 59 25 1 113 171 9 60 6.95e-12 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene42832.t1 AT1G69490 66.471 170 55 1 10 179 5 172 5.82e-81 247
MS.gene42832.t1 AT1G61110 67.442 172 39 3 14 173 16 182 8.24e-80 246
MS.gene42832.t1 AT3G15510 61.404 171 59 1 18 181 21 191 4.54e-76 238
MS.gene42832.t1 AT1G77450 59.218 179 69 2 8 186 4 178 3.19e-74 229
MS.gene42832.t1 AT1G01720 67.097 155 48 1 14 168 7 158 1.48e-72 226
MS.gene42832.t1 AT3G04070 56.842 190 67 3 13 187 9 198 1.79e-72 228
MS.gene42832.t1 AT3G04070 54.369 206 63 4 13 187 9 214 7.57e-72 226
MS.gene42832.t1 AT5G08790 58.333 180 71 2 9 187 2 178 7.85e-71 221
MS.gene42832.t1 AT1G52880 67.500 160 46 2 18 171 21 180 1.82e-69 219
MS.gene42832.t1 AT5G63790 58.427 178 69 3 9 184 45 219 1.76e-68 216
MS.gene42832.t1 AT5G63790 59.218 179 66 4 9 184 55 229 2.15e-68 216
MS.gene42832.t1 AT3G15500 58.580 169 64 2 10 178 10 172 1.54e-67 214
MS.gene42832.t1 AT4G27410 59.119 159 59 2 10 168 10 162 4.75e-67 212
MS.gene42832.t1 AT1G52890 57.803 173 67 2 1 173 1 167 6.39e-67 213
MS.gene42832.t1 AT4G27410 53.409 176 59 3 10 168 10 179 8.32e-63 202
MS.gene42832.t1 AT1G26870 45.500 200 102 2 16 208 18 217 8.18e-56 187
MS.gene42832.t1 AT5G39820 42.180 211 105 2 16 209 22 232 2.37e-55 183
MS.gene42832.t1 AT2G24430 51.176 170 78 2 4 173 6 170 3.39e-55 182
MS.gene42832.t1 AT2G24430 51.176 170 78 2 4 173 6 170 3.39e-55 182
MS.gene42832.t1 AT1G76420 51.534 163 74 1 14 176 22 179 9.99e-55 181
MS.gene42832.t1 AT5G53950 53.374 163 73 2 6 168 10 169 7.39e-54 181
MS.gene42832.t1 AT5G07680 53.086 162 72 3 14 175 3 160 1.81e-53 177
MS.gene42832.t1 AT5G07680 53.086 162 72 3 14 175 17 174 1.97e-53 178
MS.gene42832.t1 AT3G15170 54.305 151 67 1 15 165 21 169 2.79e-52 174
MS.gene42832.t1 AT5G39610 52.500 160 62 3 14 168 20 170 5.33e-52 173
MS.gene42832.t1 AT5G61430 51.852 162 74 3 14 175 16 173 7.03e-52 174
MS.gene42832.t1 AT5G13180 54.605 152 61 3 14 165 14 157 8.57e-52 171
MS.gene42832.t1 AT3G04060 51.829 164 76 3 5 168 11 171 9.56e-52 174
MS.gene42832.t1 AT1G65910 52.047 171 73 5 13 181 5 168 1.85e-51 179
MS.gene42832.t1 AT2G02450 54.667 150 61 3 16 165 53 195 3.07e-51 174
MS.gene42832.t1 AT2G02450 54.667 150 61 3 16 165 53 195 3.22e-51 174
MS.gene42832.t1 AT3G17730 51.852 162 68 5 14 171 6 161 4.33e-51 169
MS.gene42832.t1 AT3G18400 50.625 160 72 2 14 173 5 157 6.66e-51 171
MS.gene42832.t1 AT3G03200 51.875 160 66 4 13 168 5 157 8.98e-51 175
MS.gene42832.t1 AT3G29035 46.369 179 82 3 14 192 24 188 1.03e-50 171
MS.gene42832.t1 AT5G46590 50.562 178 77 5 14 187 6 176 1.55e-50 169
MS.gene42832.t1 AT5G18270 47.826 184 82 4 6 189 13 182 1.59e-50 171
MS.gene42832.t1 AT5G18270 47.826 184 82 4 6 189 13 182 3.77e-50 170
MS.gene42832.t1 AT2G43000 48.428 159 77 2 16 174 20 173 6.84e-50 167
MS.gene42832.t1 AT5G17260 51.250 160 67 4 13 168 5 157 8.85e-50 172
MS.gene42832.t1 AT2G33480 53.289 152 62 3 14 165 15 157 1.24e-49 166
MS.gene42832.t1 AT2G33480 53.289 152 60 3 14 165 15 155 2.01e-49 166
MS.gene42832.t1 AT2G17040 43.128 211 100 5 16 220 8 204 2.10e-49 166
MS.gene42832.t1 AT4G10350 51.235 162 70 3 7 165 2 157 1.68e-48 166
MS.gene42832.t1 AT1G79580 50.314 159 68 3 13 168 16 166 1.69e-48 166
MS.gene42832.t1 AT1G79580 50.314 159 68 3 13 168 16 166 1.69e-48 166
MS.gene42832.t1 AT1G79580 50.314 159 68 3 13 168 16 166 1.69e-48 166
MS.gene42832.t1 AT1G79580 50.314 159 68 3 13 168 16 166 1.69e-48 166
MS.gene42832.t1 AT1G79580 50.314 159 68 3 13 168 16 166 1.69e-48 166
MS.gene42832.t1 AT1G33280 51.220 164 68 3 8 168 2 156 9.12e-48 162
MS.gene42832.t1 AT4G17980 50.920 163 66 5 13 168 5 160 1.09e-47 161
MS.gene42832.t1 AT4G17980 50.920 163 66 5 13 168 5 160 1.31e-47 162
MS.gene42832.t1 AT1G71930 48.428 159 71 3 13 168 8 158 1.59e-47 162
MS.gene42832.t1 AT1G71930 48.428 159 71 3 13 168 8 158 1.59e-47 162
MS.gene42832.t1 AT1G56010 43.333 180 98 3 14 192 19 195 1.74e-46 160
MS.gene42832.t1 AT4G36160 44.865 185 90 4 13 194 9 184 1.97e-46 161
MS.gene42832.t1 AT4G36160 44.865 185 90 4 13 194 9 184 1.97e-46 161
MS.gene42832.t1 AT4G36160 44.865 185 90 4 13 194 13 188 1.97e-46 161
MS.gene42832.t1 AT1G12260 44.828 174 84 4 15 184 8 173 2.00e-46 160
MS.gene42832.t1 AT5G46590 54.815 135 58 2 14 146 6 139 2.57e-46 158
MS.gene42832.t1 AT4G28530 47.093 172 67 3 14 169 10 173 4.08e-46 159
MS.gene42832.t1 AT3G10480 47.826 161 77 3 10 168 23 178 4.38e-46 162
MS.gene42832.t1 AT1G12260 44.828 174 84 4 15 184 8 173 4.93e-46 160
MS.gene42832.t1 AT2G18060 47.799 159 72 3 13 168 8 158 5.27e-46 160
MS.gene42832.t1 AT2G18060 47.799 159 72 3 13 168 8 158 5.27e-46 160
MS.gene42832.t1 AT3G10480 48.447 161 75 4 10 168 23 177 1.31e-45 160
MS.gene42832.t1 AT5G66300 47.239 163 76 3 13 172 11 166 1.41e-45 156
MS.gene42832.t1 AT1G62700 44.571 175 84 4 15 184 8 174 1.62e-45 159
MS.gene42832.t1 AT1G62700 44.571 175 84 4 15 184 8 174 1.62e-45 159
MS.gene42832.t1 AT1G54330 46.914 162 75 3 13 172 5 157 2.11e-45 156
MS.gene42832.t1 AT3G10490 46.835 158 77 3 13 168 26 178 4.26e-45 154
MS.gene42832.t1 AT5G62380 46.341 164 77 3 14 174 7 162 6.26e-45 156
MS.gene42832.t1 AT5G62380 46.341 164 77 3 14 174 7 162 6.26e-45 156
MS.gene42832.t1 AT1G32770 47.239 163 75 4 15 168 17 177 1.07e-44 156
MS.gene42832.t1 AT1G32510 48.447 161 69 4 14 165 6 161 2.78e-44 153
MS.gene42832.t1 AT2G46770 43.889 180 83 5 15 182 17 190 3.26e-44 155
MS.gene42832.t1 AT3G12977 41.618 173 96 2 14 186 18 185 3.53e-44 152
MS.gene42832.t1 AT3G10490 46.835 158 77 3 13 168 26 178 1.74e-43 155
MS.gene42832.t1 AT3G10500 46.108 167 82 3 7 171 2 162 3.22e-43 156
MS.gene42832.t1 AT1G33060 50.633 158 70 4 13 168 23 174 8.09e-43 156
MS.gene42832.t1 AT1G33060 50.633 158 70 4 13 168 23 174 8.45e-43 156
MS.gene42832.t1 AT3G10480 40.722 194 75 4 10 168 23 211 1.60e-42 154
MS.gene42832.t1 AT4G35580 54.412 136 58 2 7 140 2 135 3.53e-42 153
MS.gene42832.t1 AT4G35580 54.412 136 58 2 7 140 2 135 3.88e-42 153
MS.gene42832.t1 AT4G35580 54.412 136 58 2 7 140 2 135 4.65e-42 152
MS.gene42832.t1 AT1G34180 52.344 128 57 2 16 141 18 143 1.12e-41 150
MS.gene42832.t1 AT3G61910 42.857 175 82 4 15 175 12 182 1.96e-41 147
MS.gene42832.t1 AT1G34180 52.344 128 57 2 16 141 18 143 4.38e-41 150
MS.gene42832.t1 AT1G34190 50.781 128 59 2 16 141 18 143 9.27e-41 149
MS.gene42832.t1 AT5G04410 44.512 164 83 3 7 168 2 159 1.01e-40 149
MS.gene42832.t1 AT3G12910 44.706 170 76 5 16 171 23 188 5.09e-40 142
MS.gene42832.t1 AT5G24590 43.646 181 90 5 13 187 12 186 6.27e-40 145
MS.gene42832.t1 AT1G34180 47.857 140 57 3 16 141 18 155 1.34e-38 142
MS.gene42832.t1 AT5G09330 42.581 155 81 3 16 168 8 156 2.08e-38 142
MS.gene42832.t1 AT5G09330 42.581 155 81 3 16 168 8 156 2.08e-38 142
MS.gene42832.t1 AT5G09330 42.581 155 81 3 16 168 8 156 2.08e-38 142
MS.gene42832.t1 AT5G09330 42.581 155 81 3 16 168 8 156 2.08e-38 142
MS.gene42832.t1 AT5G09330 42.581 155 81 3 16 168 8 156 2.08e-38 142
MS.gene42832.t1 AT3G44290 36.000 200 95 6 16 210 16 187 2.72e-38 135
MS.gene42832.t1 AT1G34180 47.857 140 57 3 16 141 18 155 4.66e-38 142
MS.gene42832.t1 AT3G49530 48.120 133 66 2 13 143 12 143 2.35e-37 138
MS.gene42832.t1 AT3G49530 48.120 133 66 2 13 143 12 143 2.86e-37 139
MS.gene42832.t1 AT3G44290 36.000 200 95 6 16 210 16 187 3.71e-37 135
MS.gene42832.t1 AT2G27300 42.763 152 73 4 16 166 16 154 2.38e-36 134
MS.gene42832.t1 AT5G22290 41.916 167 79 4 13 173 20 174 2.40e-36 134
MS.gene42832.t1 AT5G64060 40.127 157 86 3 14 168 6 156 1.19e-35 132
MS.gene42832.t1 AT1G32870 45.181 166 83 4 8 171 4 163 5.16e-35 133
MS.gene42832.t1 AT1G32870 45.181 166 83 4 8 171 4 163 5.88e-35 133
MS.gene42832.t1 AT1G32870 45.181 166 83 4 8 171 40 199 7.49e-35 133
MS.gene42832.t1 AT5G04395 41.611 149 73 2 8 142 22 170 1.25e-34 125
MS.gene42832.t1 AT5G64530 38.095 168 82 3 14 171 3 158 4.18e-34 124
MS.gene42832.t1 AT5G22380 41.290 155 82 4 17 165 8 159 2.26e-32 120
MS.gene42832.t1 AT5G64530 43.077 130 62 2 14 143 3 120 3.51e-32 117
MS.gene42832.t1 AT4G28530 38.953 172 44 4 14 169 10 136 7.05e-30 115
MS.gene42832.t1 AT3G44350 43.165 139 69 4 17 148 8 143 9.91e-30 111
MS.gene42832.t1 AT5G61430 50.450 111 51 3 65 175 4 110 1.52e-29 114
MS.gene42832.t1 AT3G44350 38.710 186 93 8 17 192 8 182 1.78e-29 113
MS.gene42832.t1 AT1G56010 43.846 130 70 2 63 192 2 128 4.68e-29 112
MS.gene42832.t1 AT4G01550 39.548 177 93 6 17 189 7 173 2.98e-28 114
MS.gene42832.t1 AT4G10350 54.545 99 39 2 67 165 18 110 8.05e-28 110
MS.gene42832.t1 AT3G12977 43.802 121 63 2 66 186 17 132 1.12e-27 108
MS.gene42832.t1 AT4G01520 40.000 160 82 6 15 169 5 155 1.79e-27 109
MS.gene42832.t1 AT2G33480 52.525 99 41 2 67 165 8 100 2.81e-27 106
MS.gene42832.t1 AT4G01540 39.873 158 81 6 17 169 7 155 2.16e-26 108
MS.gene42832.t1 AT4G01540 39.873 158 81 6 17 169 7 155 3.06e-26 107
MS.gene42832.t1 AT4G01540 39.873 158 81 6 17 169 7 155 3.40e-26 108
MS.gene42832.t1 AT4G01540 39.873 158 81 6 17 169 7 155 3.55e-26 107
MS.gene42832.t1 AT3G04420 36.478 159 86 4 15 169 4 151 5.88e-26 105
MS.gene42832.t1 AT3G04420 36.478 159 86 4 15 169 4 151 1.10e-25 105
MS.gene42832.t1 AT1G02230 38.168 131 73 4 15 140 4 131 6.41e-23 97.8
MS.gene42832.t1 AT1G01010 34.595 185 94 7 17 188 6 176 1.10e-21 95.1
MS.gene42832.t1 AT2G43000 45.455 99 49 2 76 174 2 95 5.00e-21 89.4
MS.gene42832.t1 AT5G14000 37.405 131 76 3 14 142 15 141 1.52e-20 87.0
MS.gene42832.t1 AT5G14000 37.405 131 76 3 14 142 15 141 4.58e-20 87.0
MS.gene42832.t1 AT1G02250 32.500 160 92 5 15 169 4 152 5.87e-20 89.7
MS.gene42832.t1 AT1G02220 37.692 130 72 4 15 140 4 128 1.10e-19 89.0
MS.gene42832.t1 AT3G56530 34.783 138 79 4 8 139 46 178 5.30e-17 80.5
MS.gene42832.t1 AT3G10490 47.561 82 38 2 87 168 2 78 6.96e-17 80.5
MS.gene42832.t1 AT3G10490 47.561 82 38 2 87 168 2 78 6.96e-17 80.5
MS.gene42832.t1 AT3G55210 30.178 169 92 6 12 165 9 166 1.36e-14 73.2
MS.gene42832.t1 AT5G50820 31.852 135 82 5 14 146 17 143 2.89e-14 70.9
MS.gene42832.t1 AT2G18060 45.455 77 34 2 92 168 2 70 1.49e-13 70.1
MS.gene42832.t1 AT5G22290 45.349 86 30 3 93 173 2 75 1.96e-12 66.2
MS.gene42832.t1 AT1G28470 33.562 146 76 8 13 141 76 217 1.10e-11 65.1
MS.gene42832.t1 AT3G04430 38.462 104 60 4 20 121 6 107 3.41e-11 62.0

Find 63 sgRNAs with CRISPR-Local

Find 75 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACCCCTTGGTAAGTTTAA+TGG 0.176245 2.3:-7929567 None:intergenic
GATGCACACGAAGAAATTAT+TGG 0.193909 2.3:-7929210 None:intergenic
CCTGAAGCTGCTGTTCTATT+TGG 0.208916 2.3:-7929159 None:intergenic
ATGTCGAGTTTGAGCGTTAA+TGG 0.222020 2.3:+7929708 MS.gene42832:CDS
TCAAACTGTAATCCCTTCTT+TGG 0.246326 2.3:+7929788 MS.gene42832:CDS
TGGAAAAGTGTAATTTGATT+TGG 0.281222 2.3:-7928822 None:intergenic
TTGATGGAGGGACAACAAAA+TGG 0.308259 2.3:+7928797 None:intergenic
GAACAGCAGCTTCAGGATAT+TGG 0.319990 2.3:+7929166 MS.gene42832:CDS
GATCGAAAGTTCACGTTTGT+AGG 0.336222 2.3:-7929597 None:intergenic
TTATGTCGGGTTCGAAATAA+AGG 0.361202 2.3:+7929489 MS.gene42832:CDS
TTAATCCATTCGGATACTTT+CGG 0.372999 2.3:-7929134 None:intergenic
GAAAGTATCCGAATGGATTA+AGG 0.374920 2.3:+7929136 MS.gene42832:CDS
CTAACTTCAGTTTATGAAGA+AGG 0.386642 2.3:+7929747 MS.gene42832:CDS
CCAAATAGAACAGCAGCTTC+AGG 0.393395 2.3:+7929159 MS.gene42832:CDS
CTTTGTTTGGTGAGGAAGAA+TGG 0.399941 2.3:+7929091 MS.gene42832:CDS
TTCGGATACTTTCGGTCTCT+CGG 0.404947 2.3:-7929126 None:intergenic
CCTTGGTAAGTTTAATGGTA+TGG 0.413413 2.3:-7929562 None:intergenic
GCTATAATCGACGCTGGAAG+TGG 0.423391 2.3:-7928917 None:intergenic
CTATTTGGCCTTAATCCATT+CGG 0.425340 2.3:-7929144 None:intergenic
TTATGAAGAAGGTTTCAATA+AGG 0.425370 2.3:+7929758 MS.gene42832:CDS
TTATTCAGGTAGACCTCCTA+AGG 0.433041 2.3:+7929266 MS.gene42832:CDS
ATCAACACTGAGAACAAATT+AGG 0.440583 2.3:+7929891 MS.gene42832:CDS
TCAGGATATTGGAAGGCAAC+TGG 0.442016 2.3:+7929177 MS.gene42832:CDS
GGTAAGTTTAATGGTATGGT+TGG 0.462695 2.3:-7929558 None:intergenic
GTAGGGCGTTCTTCACCCCT+TGG 0.465090 2.3:-7929579 None:intergenic
TTTGAGTTTGAACGATTTCG+TGG 0.465187 2.3:-7929337 None:intergenic
ATCATAGCCTCTATTCTAGT+TGG 0.470052 2.3:+7929657 MS.gene42832:CDS
AATGGTATGGTTGGTTCACT+AGG 0.470257 2.3:-7929549 None:intergenic
CAATCTGTCTTAACTCCCTT+AGG 0.472334 2.3:-7929282 None:intergenic
TTGAAGTAACATTCCAAAGA+AGG 0.474571 2.3:-7929801 None:intergenic
CTAAGGGAGTTAAGACAGAT+TGG 0.476497 2.3:+7929283 MS.gene42832:CDS
GGATGACTGGGTATTATGTC+GGG 0.477294 2.3:+7929476 MS.gene42832:CDS
TCGTGTGCATCAAAGCATAT+AGG 0.483990 2.3:+7929222 MS.gene42832:CDS
CTCGACATGTTCTCAGTTGG+AGG 0.484459 2.3:-7929693 None:intergenic
TGTGCAGAGAAGTCTTTGTT+TGG 0.486062 2.3:+7929078 MS.gene42832:intron
TGGATGACTGGGTATTATGT+CGG 0.492959 2.3:+7929475 MS.gene42832:CDS
ATCGAAAGTTCACGTTTGTA+GGG 0.495177 2.3:-7929596 None:intergenic
GATCATGAATGAGTATAGAT+TGG 0.501119 2.3:+7929305 MS.gene42832:CDS
ATAGCCTCTATTCTAGTTGG+TGG 0.501858 2.3:+7929660 MS.gene42832:CDS
ATCTCTATAAGTATAATCCA+TGG 0.526250 2.3:+7928948 MS.gene42832:CDS
AAACTCGACATGTTCTCAGT+TGG 0.532407 2.3:-7929696 None:intergenic
AACTCCACCAACTAGAATAG+AGG 0.537358 2.3:-7929664 None:intergenic
TGAAGTAACATTCCAAAGAA+GGG 0.552108 2.3:-7929800 None:intergenic
GCATAAAATTCTTTGATGGA+GGG 0.552629 2.3:+7928785 None:intergenic
TGAGTTCTTCATCAGAAGGA+TGG 0.561435 2.3:-7928859 None:intergenic
AGAGAAGTCTTTGTTTGGTG+AGG 0.597719 2.3:+7929083 MS.gene42832:intron
ACGAAATCGTTCAAACTCAA+AGG 0.602796 2.3:+7929339 MS.gene42832:CDS
ATTTCAGCTATAATCGACGC+TGG 0.604840 2.3:-7928923 None:intergenic
TCTGTCTTAACTCCCTTAGG+AGG 0.608939 2.3:-7929279 None:intergenic
ACTATGAGTTCTTCATCAGA+AGG 0.609045 2.3:-7928863 None:intergenic
TCTCTATAAGTATAATCCAT+GGG 0.620806 2.3:+7928949 MS.gene42832:CDS
AGCAGCTTCAGGATATTGGA+AGG 0.620992 2.3:+7929170 MS.gene42832:CDS
CCATACCATTAAACTTACCA+AGG 0.622149 2.3:+7929562 MS.gene42832:CDS
AGAGACCGAAAGTATCCGAA+TGG 0.624198 2.3:+7929129 MS.gene42832:CDS
CATACCATTAAACTTACCAA+GGG 0.626430 2.3:+7929563 MS.gene42832:CDS
CAAACTCAAAGGTTCCATGC+GGG 0.628355 2.3:+7929350 MS.gene42832:CDS
TATTCAGGTAGACCTCCTAA+GGG 0.630503 2.3:+7929267 MS.gene42832:CDS
GACATGTTCTCAGTTGGAGG+AGG 0.631484 2.3:-7929690 None:intergenic
AACATACTAGGTAACTCCCA+TGG 0.643583 2.3:-7928965 None:intergenic
GAAGGATGGAATCTGAAACC+AGG 0.664271 2.3:-7928845 None:intergenic
GGATGGAATCTGAAACCAGG+TGG 0.688994 2.3:-7928842 None:intergenic
TCAAACTCAAAGGTTCCATG+CGG 0.709010 2.3:+7929349 MS.gene42832:CDS
ATACCATTAAACTTACCAAG+GGG 0.728416 2.3:+7929564 MS.gene42832:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTAAAAAGAAAATCTAATG+AGG + chr2.3:7929827-7929846 MS.gene42832:CDS 20.0%
!! TCATTATGATAAACAAGATT+TGG - chr2.3:7929034-7929053 None:intergenic 20.0%
!!! TCATTAGATTTTCTTTTTAG+TGG - chr2.3:7929828-7929847 None:intergenic 20.0%
! ATCTCTATAAGTATAATCCA+TGG + chr2.3:7928948-7928967 MS.gene42832:CDS 25.0%
! TCTCTATAAGTATAATCCAT+GGG + chr2.3:7928949-7928968 MS.gene42832:CDS 25.0%
! TTATGAAGAAGGTTTCAATA+AGG + chr2.3:7929758-7929777 MS.gene42832:CDS 25.0%
!! TGGAAAAGTGTAATTTGATT+TGG - chr2.3:7928825-7928844 None:intergenic 25.0%
AGTTCAAGCACTATGAATAA+AGG - chr2.3:7929420-7929439 None:intergenic 30.0%
ATACCATTAAACTTACCAAG+GGG + chr2.3:7929564-7929583 MS.gene42832:CDS 30.0%
ATCAACACTGAGAACAAATT+AGG + chr2.3:7929891-7929910 MS.gene42832:CDS 30.0%
CATACCATTAAACTTACCAA+GGG + chr2.3:7929563-7929582 MS.gene42832:CDS 30.0%
CTAACTTCAGTTTATGAAGA+AGG + chr2.3:7929747-7929766 MS.gene42832:CDS 30.0%
GATCATGAATGAGTATAGAT+TGG + chr2.3:7929305-7929324 MS.gene42832:CDS 30.0%
GTTCAAGCACTATGAATAAA+GGG - chr2.3:7929419-7929438 None:intergenic 30.0%
TGAAGTAACATTCCAAAGAA+GGG - chr2.3:7929803-7929822 None:intergenic 30.0%
TTAATCCATTCGGATACTTT+CGG - chr2.3:7929137-7929156 None:intergenic 30.0%
TTGAAGTAACATTCCAAAGA+AGG - chr2.3:7929804-7929823 None:intergenic 30.0%
!! AAAGCTCTTGTGTTTTATTC+AGG + chr2.3:7929252-7929271 MS.gene42832:CDS 30.0%
ACGAAATCGTTCAAACTCAA+AGG + chr2.3:7929339-7929358 MS.gene42832:CDS 35.0%
ACTAAGAATACGAAGAGTGA+AGG - chr2.3:7928999-7929018 None:intergenic 35.0%
ACTATGAGTTCTTCATCAGA+AGG - chr2.3:7928866-7928885 None:intergenic 35.0%
ATCATAGCCTCTATTCTAGT+TGG + chr2.3:7929657-7929676 MS.gene42832:CDS 35.0%
ATCGAAAGTTCACGTTTGTA+GGG - chr2.3:7929599-7929618 None:intergenic 35.0%
CCATACCATTAAACTTACCA+AGG + chr2.3:7929562-7929581 MS.gene42832:CDS 35.0%
CCTTGGTAAGTTTAATGGTA+TGG - chr2.3:7929565-7929584 None:intergenic 35.0%
GATGCACACGAAGAAATTAT+TGG - chr2.3:7929213-7929232 None:intergenic 35.0%
GGTAAGTTTAATGGTATGGT+TGG - chr2.3:7929561-7929580 None:intergenic 35.0%
TACTTAAAAACTTACCCGCA+TGG - chr2.3:7929367-7929386 None:intergenic 35.0%
TCAAACTGTAATCCCTTCTT+TGG + chr2.3:7929788-7929807 MS.gene42832:CDS 35.0%
TTATGTCGGGTTCGAAATAA+AGG + chr2.3:7929489-7929508 MS.gene42832:CDS 35.0%
! TCAAATTACACTTTTCCACC+TGG + chr2.3:7928827-7928846 MS.gene42832:CDS 35.0%
! TTTGAGTTTGAACGATTTCG+TGG - chr2.3:7929340-7929359 None:intergenic 35.0%
!! AGCTTTTGAAAATCGATGCT+AGG - chr2.3:7929924-7929943 None:intergenic 35.0%
!! CATTTCTCTGCTTTTACAGT+TGG + chr2.3:7929455-7929474 MS.gene42832:intron 35.0%
!! CTATTTGGCCTTAATCCATT+CGG - chr2.3:7929147-7929166 None:intergenic 35.0%
!! GAAAGTATCCGAATGGATTA+AGG + chr2.3:7929136-7929155 MS.gene42832:CDS 35.0%
AAACTCGACATGTTCTCAGT+TGG - chr2.3:7929699-7929718 None:intergenic 40.0%
AACATACTAGGTAACTCCCA+TGG - chr2.3:7928968-7928987 None:intergenic 40.0%
AACTCCACCAACTAGAATAG+AGG - chr2.3:7929667-7929686 None:intergenic 40.0%
AAGGAAGTCGAGAACATACT+AGG - chr2.3:7928980-7928999 None:intergenic 40.0%
ATGTCGAGTTTGAGCGTTAA+TGG + chr2.3:7929708-7929727 MS.gene42832:CDS 40.0%
ATTTCAGCTATAATCGACGC+TGG - chr2.3:7928926-7928945 None:intergenic 40.0%
CAATCTGTCTTAACTCCCTT+AGG - chr2.3:7929285-7929304 None:intergenic 40.0%
CTAAGGGAGTTAAGACAGAT+TGG + chr2.3:7929283-7929302 MS.gene42832:CDS 40.0%
GATCGAAAGTTCACGTTTGT+AGG - chr2.3:7929600-7929619 None:intergenic 40.0%
TATTCAGGTAGACCTCCTAA+GGG + chr2.3:7929267-7929286 MS.gene42832:CDS 40.0%
TCAAACTCAAAGGTTCCATG+CGG + chr2.3:7929349-7929368 MS.gene42832:CDS 40.0%
TCACCCCTTGGTAAGTTTAA+TGG - chr2.3:7929570-7929589 None:intergenic 40.0%
TCGTGTGCATCAAAGCATAT+AGG + chr2.3:7929222-7929241 MS.gene42832:CDS 40.0%
TGAGTTCTTCATCAGAAGGA+TGG - chr2.3:7928862-7928881 None:intergenic 40.0%
TGGATGACTGGGTATTATGT+CGG + chr2.3:7929475-7929494 MS.gene42832:CDS 40.0%
TGTGCAGAGAAGTCTTTGTT+TGG + chr2.3:7929078-7929097 MS.gene42832:intron 40.0%
TTATTCAGGTAGACCTCCTA+AGG + chr2.3:7929266-7929285 MS.gene42832:CDS 40.0%
! AATGGTATGGTTGGTTCACT+AGG - chr2.3:7929552-7929571 None:intergenic 40.0%
! AGAGAAGTCTTTGTTTGGTG+AGG + chr2.3:7929083-7929102 MS.gene42832:intron 40.0%
! ATAGCCTCTATTCTAGTTGG+TGG + chr2.3:7929660-7929679 MS.gene42832:CDS 40.0%
! CTTTGTTTGGTGAGGAAGAA+TGG + chr2.3:7929091-7929110 MS.gene42832:CDS 40.0%
! GCTTTTACAGTTGGATGACT+GGG + chr2.3:7929464-7929483 MS.gene42832:intron 40.0%
! TGCTTTTACAGTTGGATGAC+TGG + chr2.3:7929463-7929482 MS.gene42832:intron 40.0%
AGCAGCTTCAGGATATTGGA+AGG + chr2.3:7929170-7929189 MS.gene42832:CDS 45.0%
CAAACTCAAAGGTTCCATGC+GGG + chr2.3:7929350-7929369 MS.gene42832:CDS 45.0%
CCAAATAGAACAGCAGCTTC+AGG + chr2.3:7929159-7929178 MS.gene42832:CDS 45.0%
CCTGAAGCTGCTGTTCTATT+TGG - chr2.3:7929162-7929181 None:intergenic 45.0%
GAACAGCAGCTTCAGGATAT+TGG + chr2.3:7929166-7929185 MS.gene42832:CDS 45.0%
GGATGACTGGGTATTATGTC+GGG + chr2.3:7929476-7929495 MS.gene42832:CDS 45.0%
TCAGGATATTGGAAGGCAAC+TGG + chr2.3:7929177-7929196 MS.gene42832:CDS 45.0%
TCTGTCTTAACTCCCTTAGG+AGG - chr2.3:7929282-7929301 None:intergenic 45.0%
TTCGGATACTTTCGGTCTCT+CGG - chr2.3:7929129-7929148 None:intergenic 45.0%
! GAAGGATGGAATCTGAAACC+AGG - chr2.3:7928848-7928867 None:intergenic 45.0%
!! AGAGACCGAAAGTATCCGAA+TGG + chr2.3:7929129-7929148 MS.gene42832:CDS 45.0%
CTCGACATGTTCTCAGTTGG+AGG - chr2.3:7929696-7929715 None:intergenic 50.0%
GACATGTTCTCAGTTGGAGG+AGG - chr2.3:7929693-7929712 None:intergenic 50.0%
GCTATAATCGACGCTGGAAG+TGG - chr2.3:7928920-7928939 None:intergenic 50.0%
! GGATGGAATCTGAAACCAGG+TGG - chr2.3:7928845-7928864 None:intergenic 50.0%
! GTAGGGCGTTCTTCACCCCT+TGG - chr2.3:7929582-7929601 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 7928800 7929965 7928800 ID=MS.gene42832
chr2.3 mRNA 7928800 7929965 7928800 ID=MS.gene42832.t1;Parent=MS.gene42832
chr2.3 exon 7928800 7928980 7928800 ID=MS.gene42832.t1.exon1;Parent=MS.gene42832.t1
chr2.3 CDS 7928800 7928980 7928800 ID=cds.MS.gene42832.t1;Parent=MS.gene42832.t1
chr2.3 exon 7929085 7929371 7929085 ID=MS.gene42832.t1.exon2;Parent=MS.gene42832.t1
chr2.3 CDS 7929085 7929371 7929085 ID=cds.MS.gene42832.t1;Parent=MS.gene42832.t1
chr2.3 exon 7929474 7929965 7929474 ID=MS.gene42832.t1.exon3;Parent=MS.gene42832.t1
chr2.3 CDS 7929474 7929965 7929474 ID=cds.MS.gene42832.t1;Parent=MS.gene42832.t1
Gene Sequence

>MS.gene42832

ATGGAGGGACAACAAAATGGATCCAAATCAAATTACACTTTTCCACCTGGTTTCAGATTCCATCCTTCTGATGAAGAACTCATAGTTCATTACTTGCAAAACAAAATCAAATCGCGTCCACTTCCAGCGTCGATTATAGCTGAAATTGATCTCTATAAGTATAATCCATGGGAGTTACCTAGTATGTTCTCGACTTCCTTCACTCTTCGTATTCTTAGTATATAGTATATACCAAATCTTGTTTATCATAATGAACATGTTTTTCTTTTTCTTGTGATTGTGCAGAGAAGTCTTTGTTTGGTGAGGAAGAATGGTATTTCTTTAGTCCGAGAGACCGAAAGTATCCGAATGGATTAAGGCCAAATAGAACAGCAGCTTCAGGATATTGGAAGGCAACTGGAACTGATAAGCCAATAATTTCTTCGTGTGCATCAAAGCATATAGGAGTGAAGAAAGCTCTTGTGTTTTATTCAGGTAGACCTCCTAAGGGAGTTAAGACAGATTGGATCATGAATGAGTATAGATTGGTCGACACAACCACGAAATCGTTCAAACTCAAAGGTTCCATGCGGGTAAGTTTTTAAGTAATAAGCATTTATTCATAGTGTGACTGTGACCCTTTATTCATAGTGCTTGAACTCAATGCAATAATAAGCATTTCTCTGCTTTTACAGTTGGATGACTGGGTATTATGTCGGGTTCGAAATAAAGGCTGTTCATTGAAGAATTTATCTGAGAATCAAGAGAATCCTAGTGAACCAACCATACCATTAAACTTACCAAGGGGTGAAGAACGCCCTACAAACGTGAACTTTCGATCTGACATTATCACAGATTATCAGTTCAAAGACTATCAGATCATAGCCTCTATTCTAGTTGGTGGAGTTATACCTCCTCCAACTGAGAACATGTCGAGTTTGAGCGTTAATGGAAGCAAATGCAACAATCTAACTTCAGTTTATGAAGAAGGTTTCAATAAGGTGAATTCTCAAACTGTAATCCCTTCTTTGGAATGTTACTTCAATCCACTAAAAAGAAAATCTAATGAGGATGATGATCAGTTTGAAAATCTCATTTCTTTTAACAGCAAGATCAACACTGAGAACAAATTAGGCAAATCTCCTAGCATCGATTTTCAAAAGCTAAATGAATTTACCTTTACATAA
Protein sequence

>MS.gene42832.t1

MEGQQNGSKSNYTFPPGFRFHPSDEELIVHYLQNKIKSRPLPASIIAEIDLYKYNPWELPKKSLFGEEEWYFFSPRDRKYPNGLRPNRTAASGYWKATGTDKPIISSCASKHIGVKKALVFYSGRPPKGVKTDWIMNEYRLVDTTTKSFKLKGSMRLDDWVLCRVRNKGCSLKNLSENQENPSEPTIPLNLPRGEERPTNVNFRSDIITDYQFKDYQIIASILVGGVIPPPTENMSSLSVNGSKCNNLTSVYEEGFNKVNSQTVIPSLECYFNPLKRKSNEDDDQFENLISFNSKINTENKLGKSPSIDFQKLNEFTFT