AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene42846

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene42846.t1 MTR_2g093310 98.276 174 3 0 1 174 25 198 2.29e-128 358
MS.gene42846.t1 MTR_4g060950 76.744 172 37 3 5 174 20 190 2.52e-95 274
MS.gene42846.t1 MTR_1g095850 72.121 165 38 4 10 174 73 229 8.23e-78 231
MS.gene42846.t1 MTR_2g068760 69.027 113 35 0 4 116 8 120 2.15e-56 174
MS.gene42846.t1 MTR_4g083680 64.035 114 41 0 4 117 10 123 1.83e-52 165
MS.gene42846.t1 MTR_5g083230 63.717 113 41 0 8 120 5 117 2.60e-51 162
MS.gene42846.t1 MTR_3g071590 63.964 111 40 0 8 118 7 117 8.38e-51 160
MS.gene42846.t1 MTR_3g031660 62.385 109 41 0 8 116 6 114 4.01e-49 157
MS.gene42846.t1 MTR_6g005070 54.098 122 56 0 1 122 1 122 2.16e-44 144
MS.gene42846.t1 MTR_5g083960 56.637 113 49 0 8 120 38 150 2.26e-44 145
MS.gene42846.t1 MTR_3g077240 59.048 105 43 0 8 112 9 113 5.89e-43 142
MS.gene42846.t1 MTR_4g105170 57.944 107 45 0 8 114 10 116 1.32e-42 140
MS.gene42846.t1 MTR_6g005080 52.459 122 58 0 1 122 2 123 1.58e-42 139
MS.gene42846.t1 MTR_3g094690 55.357 112 50 0 6 117 44 155 2.58e-42 141
MS.gene42846.t1 MTR_3g073690 59.804 102 41 0 8 109 8 109 3.55e-42 140
MS.gene42846.t1 MTR_7g033800 60.194 103 41 0 8 110 10 112 1.10e-41 138
MS.gene42846.t1 MTR_5g075020 58.929 112 46 0 6 117 40 151 6.10e-40 135
MS.gene42846.t1 MTR_3g094690 54.464 112 50 1 6 117 44 154 9.26e-40 135
MS.gene42846.t1 MTR_5g075020 58.929 112 46 0 6 117 44 155 1.03e-39 134
MS.gene42846.t1 MTR_5g017950 56.863 102 44 0 8 109 7 108 1.40e-38 134
MS.gene42846.t1 MTR_3g452660 53.271 107 50 0 8 114 6 112 3.10e-37 130
MS.gene42846.t1 MTR_3g071420 58.333 96 40 0 8 103 13 108 4.73e-36 124
MS.gene42846.t1 MTR_5g083010 55.882 102 45 0 8 109 10 111 1.14e-35 122
MS.gene42846.t1 MTR_8g040900 61.728 81 31 0 8 88 6 86 1.49e-34 121
MS.gene42846.t1 MTR_7g028905 44.144 111 62 0 5 115 1 111 3.71e-34 117
MS.gene42846.t1 MTR_6g027710 41.060 151 78 3 6 151 37 181 6.20e-34 119
MS.gene42846.t1 MTR_7g096530 53.398 103 47 1 8 109 13 115 3.66e-33 117
MS.gene42846.t1 MTR_8g036105 51.402 107 51 1 8 113 17 123 1.64e-32 115
MS.gene42846.t1 MTR_1g070220 50.909 110 53 1 2 110 8 117 3.51e-32 114
MS.gene42846.t1 MTR_8g079660 49.038 104 53 0 6 109 5 108 3.51e-32 116
MS.gene42846.t1 MTR_7g074990 50.000 102 50 1 9 109 20 121 5.00e-32 115
MS.gene42846.t1 MTR_5g093010 38.298 141 77 2 5 135 1 141 1.12e-31 111
MS.gene42846.t1 MTR_8g079620 44.361 133 69 2 6 135 5 135 2.37e-31 113
MS.gene42846.t1 MTR_8g036085 48.148 108 55 1 8 114 22 129 2.75e-31 113
MS.gene42846.t1 MTR_1g070205 51.961 102 46 2 9 107 12 113 8.30e-30 109
MS.gene42846.t1 MTR_7g096610 51.546 97 46 1 8 103 7 103 1.82e-29 108
MS.gene42846.t1 MTR_7g075230 50.476 105 49 2 8 109 11 115 7.73e-29 105
MS.gene42846.t1 MTR_6g027700 40.517 116 63 2 9 123 7 117 2.84e-28 104
MS.gene42846.t1 MTR_5g080470 48.958 96 48 1 8 102 6 101 6.11e-28 103
MS.gene42846.t1 MTR_8g079580 41.481 135 75 2 6 136 5 139 2.27e-27 102
MS.gene42846.t1 MTR_6g011250 33.133 166 94 4 10 170 10 163 3.38e-27 101
MS.gene42846.t1 MTR_6g011200 42.857 119 63 2 10 123 10 128 3.81e-26 100
MS.gene42846.t1 MTR_4g107450 45.161 93 51 0 10 102 11 103 9.50e-25 97.8
MS.gene42846.t1 MTR_6g011230 48.101 79 41 0 10 88 12 90 1.35e-22 89.7
MS.gene42846.t1 MTR_4g099230 44.211 95 48 2 10 99 3 97 6.10e-22 87.0
MS.gene42846.t1 MTR_2g100020 38.000 100 62 0 10 109 20 119 2.45e-21 88.2
MS.gene42846.t1 MTR_8g017090 39.048 105 59 1 10 114 13 112 3.99e-20 85.5
MS.gene42846.t1 MTR_5g085390 46.250 80 42 1 10 88 10 89 3.83e-18 79.0
MS.gene42846.t1 MTR_4g088035 33.721 86 57 0 10 95 7 92 2.95e-14 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene42846.t1 AT2G28500 66.667 186 42 4 5 174 51 232 4.43e-80 237
MS.gene42846.t1 AT1G07900 66.667 174 43 3 4 174 28 189 7.67e-79 233
MS.gene42846.t1 AT2G30130 65.741 108 37 0 8 115 7 114 7.85e-51 162
MS.gene42846.t1 AT1G31320 66.667 114 38 0 4 117 8 121 1.20e-46 150
MS.gene42846.t1 AT1G16530 47.273 165 74 4 6 169 11 163 7.18e-45 145
MS.gene42846.t1 AT5G63090 58.182 110 46 0 8 117 10 119 3.82e-44 144
MS.gene42846.t1 AT5G63090 58.182 110 46 0 8 117 10 119 3.82e-44 144
MS.gene42846.t1 AT5G63090 58.182 110 46 0 8 117 10 119 3.82e-44 144
MS.gene42846.t1 AT5G63090 58.182 110 46 0 8 117 10 119 3.82e-44 144
MS.gene42846.t1 AT3G27650 60.194 103 41 0 8 110 38 140 1.39e-42 140
MS.gene42846.t1 AT2G30340 52.174 115 55 0 6 120 50 164 2.78e-42 142
MS.gene42846.t1 AT2G30340 52.174 115 55 0 6 120 49 163 3.02e-42 142
MS.gene42846.t1 AT2G23660 56.731 104 45 0 8 111 4 107 1.71e-41 141
MS.gene42846.t1 AT2G23660 56.731 104 45 0 8 111 4 107 1.71e-41 141
MS.gene42846.t1 AT2G23660 56.731 104 45 0 8 111 4 107 1.71e-41 141
MS.gene42846.t1 AT2G40470 57.143 112 48 0 6 117 17 128 4.83e-39 132
MS.gene42846.t1 AT3G26660 52.212 113 52 1 7 117 1 113 9.03e-39 129
MS.gene42846.t1 AT3G26620 52.212 113 52 1 7 117 1 113 9.64e-39 129
MS.gene42846.t1 AT2G40470 56.780 118 50 1 6 123 42 158 1.01e-38 132
MS.gene42846.t1 AT5G66870 56.863 102 44 0 8 109 6 107 1.36e-38 134
MS.gene42846.t1 AT1G65620 56.637 113 49 0 1 113 1 113 1.47e-36 125
MS.gene42846.t1 AT1G65620 56.637 113 49 0 1 113 1 113 1.47e-36 125
MS.gene42846.t1 AT1G65620 56.637 113 49 0 1 113 1 113 1.47e-36 125
MS.gene42846.t1 AT1G65620 56.637 113 49 0 1 113 1 113 1.47e-36 125
MS.gene42846.t1 AT1G65620 56.637 113 49 0 1 113 1 113 1.47e-36 125
MS.gene42846.t1 AT4G00210 56.075 107 46 1 8 113 10 116 6.28e-36 124
MS.gene42846.t1 AT3G11090 52.427 103 49 0 8 110 10 112 1.86e-35 122
MS.gene42846.t1 AT3G03760 48.214 112 57 1 8 118 50 161 8.03e-34 120
MS.gene42846.t1 AT3G58190 42.208 154 74 5 9 160 11 151 1.03e-31 114
MS.gene42846.t1 AT4G00220 49.038 104 52 1 12 114 20 123 9.16e-31 111
MS.gene42846.t1 AT2G31310 52.577 97 45 1 8 103 6 102 1.21e-30 110
MS.gene42846.t1 AT2G45410 53.398 103 47 1 12 113 19 121 1.44e-30 110
MS.gene42846.t1 AT2G42430 39.744 156 86 4 8 160 14 164 2.45e-30 111
MS.gene42846.t1 AT2G45420 50.000 104 51 1 12 114 40 143 5.57e-30 110
MS.gene42846.t1 AT2G42440 49.550 111 50 2 8 117 6 111 4.91e-29 107
MS.gene42846.t1 AT5G06080 43.750 112 62 1 8 118 6 117 1.87e-27 101
MS.gene42846.t1 AT3G50510 44.231 104 58 0 6 109 9 112 5.17e-27 101
MS.gene42846.t1 AT3G50510 44.231 104 58 0 6 109 9 112 5.17e-27 101
MS.gene42846.t1 AT3G47870 42.453 106 56 1 10 115 37 137 4.29e-25 99.0
MS.gene42846.t1 AT5G35900 42.000 100 58 0 10 109 6 105 5.01e-25 96.3
MS.gene42846.t1 AT1G72980 44.211 95 53 0 8 102 12 106 1.89e-24 95.1
MS.gene42846.t1 AT3G13850 40.000 105 58 1 10 114 37 136 2.88e-22 90.5
MS.gene42846.t1 AT1G06280 40.260 77 46 0 10 86 25 101 2.73e-17 76.3
MS.gene42846.t1 AT2G19820 38.043 92 56 1 5 95 8 99 7.93e-17 72.8
MS.gene42846.t1 AT4G22700 38.235 102 59 3 10 109 6 105 1.06e-15 71.6
MS.gene42846.t1 AT1G36000 32.353 102 69 0 1 102 1 102 1.19e-12 62.0
MS.gene42846.t1 AT5G15060 41.892 74 39 2 10 80 18 90 1.91e-11 59.3

Find 35 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGCTCATTGACTTGCTTT+TGG 0.237207 2.3:+8118292 None:intergenic
ACCACTGCTCATCGTGTATT+TGG 0.246441 2.3:-8121042 MS.gene42846:CDS
GAGGCTCCCACAATGAATTT+TGG 0.257844 2.3:+8118073 None:intergenic
ATTCATTGTGGGAGCCTCTT+TGG 0.264450 2.3:-8118068 MS.gene42846:CDS
ACGATGAGCAGTGGTAAATT+TGG 0.308489 2.3:+8121050 None:intergenic
GGTTCAGTGGGAGGGAAATA+AGG 0.330275 2.3:+8121075 None:intergenic
CAACATCATCAAGTTCTTAC+AGG 0.365225 2.3:-8121013 MS.gene42846:intron
AGAATAAGAGACCCTGTATA+TGG 0.385791 2.3:-8118339 MS.gene42846:CDS
GATTGTTGTGGAGATTCATT+TGG 0.432048 2.3:+8118174 None:intergenic
GGTAAATTTGGAAGGTTCAG+TGG 0.438516 2.3:+8121062 None:intergenic
ATGTGCTGAGAAATGTGTTT+TGG 0.444237 2.3:-8121100 MS.gene42846:CDS
GCACCTGCACATCCATATAC+AGG 0.450577 2.3:+8118327 None:intergenic
AGTTAGTAGCATGGTTTATG+AGG 0.452667 2.3:-8118370 MS.gene42846:CDS
GCAAATCAAAGCTAGGAGAT+TGG 0.453679 2.3:+8118215 None:intergenic
TAAGAACTTGATGATGTTGC+TGG 0.462784 2.3:+8121017 None:intergenic
TCTCCTAGCTTTGATTTGCA+TGG 0.470568 2.3:-8118211 MS.gene42846:CDS
GCATCAGCTCTTTGAGACTC+TGG 0.485917 2.3:+8118393 None:intergenic
ATTTGGAAGGTTCAGTGGGA+GGG 0.499239 2.3:+8121067 None:intergenic
TGATAATCACTGCTGTAGGC+AGG 0.499915 2.3:+8118129 None:intergenic
CACTAGCCAAAATTCATTGT+GGG 0.528888 2.3:-8118079 MS.gene42846:CDS
TTTCCATGCAAATCAAAGCT+AGG 0.531294 2.3:+8118208 None:intergenic
AATTTGGAAGGTTCAGTGGG+AGG 0.549947 2.3:+8121066 None:intergenic
GCTCAACTTCATGTCCAAAG+AGG 0.560755 2.3:+8118054 None:intergenic
GTAAATTTGGAAGGTTCAGT+GGG 0.562077 2.3:+8121063 None:intergenic
GACCCTGTATATGGATGTGC+AGG 0.562336 2.3:-8118330 MS.gene42846:CDS
AGCTGATGCAGTTAGTAGCA+TGG 0.566903 2.3:-8118379 MS.gene42846:CDS
TGAGCAGTGGTAAATTTGGA+AGG 0.588814 2.3:+8121054 None:intergenic
TGAATCTCCACAACAATCAG+TGG 0.592712 2.3:-8118169 MS.gene42846:CDS
AAAATCTTGCAAGCAGCACA+AGG 0.592933 2.3:+8121132 None:intergenic
CAAGGACTCATGACAACTTG+AGG 0.595290 2.3:+8121150 None:intergenic
ATGACAACTTGAGGAGCCAT+AGG 0.596176 2.3:+8121159 None:intergenic
ACCAAATACACGATGAGCAG+TGG 0.596399 2.3:+8121041 None:intergenic
CACCTGCACATCCATATACA+GGG 0.624861 2.3:+8118328 None:intergenic
ACACTAGCCAAAATTCATTG+TGG 0.631207 2.3:-8118080 MS.gene42846:CDS
AAATTGTCCACTGATTGTTG+TGG 0.665010 2.3:+8118162 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTATTTAAAACAAAAAAAT+TGG + chr2.3:8120577-8120596 None:intergenic 10.0%
!! AATTTCATAGATAATATTTC+CGG - chr2.3:8120167-8120186 MS.gene42846:intron 15.0%
!! ACAATAGTTAAGTAAAATTT+AGG - chr2.3:8120635-8120654 MS.gene42846:intron 15.0%
!!! AAAAATTCACAAGATTTTAT+AGG + chr2.3:8118806-8118825 None:intergenic 15.0%
!!! ATTGTATGATTTTCTATATA+TGG - chr2.3:8119142-8119161 MS.gene42846:intron 15.0%
!!! CAAAATTACATATTTTCAAA+TGG + chr2.3:8119388-8119407 None:intergenic 15.0%
!!! CATATTTAAATACTTTTCAT+TGG + chr2.3:8118404-8118423 None:intergenic 15.0%
!!! CATTTTTTATAGATCAAAAT+AGG + chr2.3:8118960-8118979 None:intergenic 15.0%
!!! GAAAAGTTTTTTTTTTTTGA+AGG - chr2.3:8119681-8119700 MS.gene42846:intron 15.0%
!!! TGTTTTAAATAACTTATTCA+TGG - chr2.3:8120584-8120603 MS.gene42846:intron 15.0%
!!! TTTAATAAAAGTACCTATTA+AGG - chr2.3:8118341-8118360 MS.gene42846:CDS 15.0%
!!! TTTATTACTTTTTTAAACGT+GGG - chr2.3:8118624-8118643 MS.gene42846:intron 15.0%
!!! TTTTATTACTTTTTTAAACG+TGG - chr2.3:8118623-8118642 MS.gene42846:intron 15.0%
!! GGTATCATTCAAAATTAATT+AGG + chr2.3:8119236-8119255 None:intergenic 20.0%
!! GTTTAATATGTAAAGATAGT+GGG + chr2.3:8118428-8118447 None:intergenic 20.0%
!! TAATTTCTACTAGATATTAG+AGG + chr2.3:8119990-8120009 None:intergenic 20.0%
!! TGTATATTAGTAGAGAAATA+TGG + chr2.3:8119427-8119446 None:intergenic 20.0%
!! TGTTTAATATGTAAAGATAG+TGG + chr2.3:8118429-8118448 None:intergenic 20.0%
!!! AAAAAAAAAAACTTTTCCGA+TGG + chr2.3:8119678-8119697 None:intergenic 20.0%
!!! ATGTGAAGTTTTATTTACAA+CGG + chr2.3:8120196-8120215 None:intergenic 20.0%
!!! CTATGAAATTGAATTTTCAA+AGG + chr2.3:8120157-8120176 None:intergenic 20.0%
!!! GTCTTTTTTTTGAAGAAATT+AGG + chr2.3:8119207-8119226 None:intergenic 20.0%
!!! TAAAGTGTTACTTTAATAGA+GGG + chr2.3:8119332-8119351 None:intergenic 20.0%
!!! TATTACTCATTTTTACAAGT+GGG - chr2.3:8118462-8118481 MS.gene42846:intron 20.0%
!!! TATTTTTGTCAAAGTTAATG+TGG - chr2.3:8118899-8118918 MS.gene42846:intron 20.0%
! AAAATATGCCAAATACATGT+AGG - chr2.3:8119730-8119749 MS.gene42846:intron 25.0%
! AATGCATAATTTCCAAGATA+AGG + chr2.3:8120289-8120308 None:intergenic 25.0%
! ACACGGTATATGTTAAATTT+AGG + chr2.3:8120050-8120069 None:intergenic 25.0%
! AGGTACATCATCAATAATAT+GGG - chr2.3:8119750-8119769 MS.gene42846:intron 25.0%
! ATATTGTCTTGCGTATTAAA+TGG + chr2.3:8120106-8120125 None:intergenic 25.0%
! ATCAAAATAGGTGAATAGTT+AGG + chr2.3:8118948-8118967 None:intergenic 25.0%
! ATCATACAATAGTCAACAAA+TGG + chr2.3:8119132-8119151 None:intergenic 25.0%
! GTAATAAAATGTGTACTACT+TGG + chr2.3:8118489-8118508 None:intergenic 25.0%
! TAAATTTAACATATACCGTG+TGG - chr2.3:8120049-8120068 MS.gene42846:intron 25.0%
! TACTTATAATAGTGACTGAA+TGG - chr2.3:8120495-8120514 MS.gene42846:intron 25.0%
! TAGGTACATCATCAATAATA+TGG - chr2.3:8119749-8119768 MS.gene42846:intron 25.0%
! TATTACTTCTTTATGCAAGT+GGG - chr2.3:8118503-8118522 MS.gene42846:intron 25.0%
! TCTATATATGGTATGTTGAT+GGG - chr2.3:8119154-8119173 MS.gene42846:intron 25.0%
! TTATTACTTCTTTATGCAAG+TGG - chr2.3:8118502-8118521 MS.gene42846:intron 25.0%
! TTCTATATATGGTATGTTGA+TGG - chr2.3:8119153-8119172 MS.gene42846:intron 25.0%
!!! CTATTACTCATTTTTACAAG+TGG - chr2.3:8118461-8118480 MS.gene42846:intron 25.0%
!!! GTAAAGTGTTACTTTAATAG+AGG + chr2.3:8119333-8119352 None:intergenic 25.0%
!!! GTAGTTTTACTTTACAATAC+AGG - chr2.3:8118227-8118246 MS.gene42846:CDS 25.0%
AACATGTCATTGTGAATTCA+CGG + chr2.3:8118849-8118868 None:intergenic 30.0%
AAGGAACAGACAACTATATA+AGG + chr2.3:8118679-8118698 None:intergenic 30.0%
AATAGTCAACAAATGGTCTA+TGG + chr2.3:8119125-8119144 None:intergenic 30.0%
ATGATGTACCTACATGTATT+TGG + chr2.3:8119741-8119760 None:intergenic 30.0%
CTATATAACTTTGACTCAAG+TGG + chr2.3:8120716-8120735 None:intergenic 30.0%
CTATATATGGTATGTTGATG+GGG - chr2.3:8119155-8119174 MS.gene42846:intron 30.0%
CTTGTTAGAATTAATGCAAG+AGG + chr2.3:8120079-8120098 None:intergenic 30.0%
GAATAGTTAGGTGAATTTGA+CGG + chr2.3:8118936-8118955 None:intergenic 30.0%
GGTACATCATCAATAATATG+GGG - chr2.3:8119751-8119770 MS.gene42846:intron 30.0%
GTACATCATCAATAATATGG+GGG - chr2.3:8119752-8119771 MS.gene42846:intron 30.0%
GTGTCAATTCTATCGAATTT+GGG + chr2.3:8119903-8119922 None:intergenic 30.0%
TATAGTTGTCTGTTCCTTAA+CGG - chr2.3:8118681-8118700 MS.gene42846:intron 30.0%
TATTTAAGGAGTCCTTGTTA+GGG + chr2.3:8118288-8118307 None:intergenic 30.0%
TCAACTGTGTCAAGTATTAA+GGG - chr2.3:8119585-8119604 MS.gene42846:intron 30.0%
TGTGTCAATTCTATCGAATT+TGG + chr2.3:8119904-8119923 None:intergenic 30.0%
TTAAAGTAGCAACCTTATCT+TGG - chr2.3:8120274-8120293 MS.gene42846:intron 30.0%
! AAGATTTTATAGGCCTATGT+AGG + chr2.3:8118796-8118815 None:intergenic 30.0%
! AATAAAACAACCTTTTCCGA+TGG + chr2.3:8119952-8119971 None:intergenic 30.0%
! ATGCATTGACATGTGTAATA+AGG - chr2.3:8119562-8119581 MS.gene42846:intron 30.0%
!! ATTTTGATAATCACTGCTGT+AGG + chr2.3:8121096-8121115 None:intergenic 30.0%
!!! CTTTTGTGAGACTAGTTTAA+GGG + chr2.3:8119257-8119276 None:intergenic 30.0%
!!! TATTCTCCTCCATTTTTTTC+AGG - chr2.3:8120797-8120816 MS.gene42846:intron 30.0%
!!! TCTTTTAAGACTTTCTCCAT+CGG - chr2.3:8119659-8119678 MS.gene42846:intron 30.0%
!!! TCTTTTGTGAGACTAGTTTA+AGG + chr2.3:8119258-8119277 None:intergenic 30.0%
AAATAAGTGATGTGTCACGT+GGG + chr2.3:8118314-8118333 None:intergenic 35.0%
AATTTATCTTCCTCCAATGG+AGG - chr2.3:8118710-8118729 MS.gene42846:intron 35.0%
ACACTAGCCAAAATTCATTG+TGG - chr2.3:8121138-8121157 MS.gene42846:CDS 35.0%
ACATGTCATTGTGAATTCAC+GGG + chr2.3:8118848-8118867 None:intergenic 35.0%
ACTCTCATGTTGAGTTCAAT+AGG + chr2.3:8119834-8119853 None:intergenic 35.0%
AGAATAAGAGACCCTGTATA+TGG - chr2.3:8120879-8120898 MS.gene42846:intron 35.0%
AGTTAGTAGCATGGTTTATG+AGG - chr2.3:8120848-8120867 MS.gene42846:intron 35.0%
ATAGTTGTCTGTTCCTTAAC+GGG - chr2.3:8118682-8118701 MS.gene42846:intron 35.0%
ATTTAACATATACCGTGTGG+TGG - chr2.3:8120052-8120071 MS.gene42846:intron 35.0%
ATTTATCTTCCTCCAATGGA+GGG - chr2.3:8118711-8118730 MS.gene42846:intron 35.0%
CAACATCATCAAGTTCTTAC+AGG - chr2.3:8118205-8118224 MS.gene42846:CDS 35.0%
CACTAGCCAAAATTCATTGT+GGG - chr2.3:8121139-8121158 MS.gene42846:CDS 35.0%
CCAATGGCAATACACTAATA+AGG - chr2.3:8118375-8118394 MS.gene42846:CDS 35.0%
CCTTATTAGTGTATTGCCAT+TGG + chr2.3:8118378-8118397 None:intergenic 35.0%
CTATTTAAGGAGTCCTTGTT+AGG + chr2.3:8118289-8118308 None:intergenic 35.0%
CTCAATTTATCTTCCTCCAA+TGG - chr2.3:8118707-8118726 MS.gene42846:intron 35.0%
CTGGAAGTTCCTGAAAAAAA+TGG + chr2.3:8120809-8120828 None:intergenic 35.0%
GAAGTTCCTGAAAAAAATGG+AGG + chr2.3:8120806-8120825 None:intergenic 35.0%
GACCATGGTAATTCAAAGTT+CGG - chr2.3:8120612-8120631 MS.gene42846:intron 35.0%
GATTGTTGTGGAGATTCATT+TGG + chr2.3:8121047-8121066 None:intergenic 35.0%
GTAAATTTGGAAGGTTCAGT+GGG + chr2.3:8118158-8118177 None:intergenic 35.0%
GTCAACTGTGTCAAGTATTA+AGG - chr2.3:8119584-8119603 MS.gene42846:intron 35.0%
TAAATAAGTGATGTGTCACG+TGG + chr2.3:8118315-8118334 None:intergenic 35.0%
TATGCTAACAAGTGTCCTTA+AGG + chr2.3:8120393-8120412 None:intergenic 35.0%
TTAGGTGAATTTGACGGAAT+CGG + chr2.3:8118930-8118949 None:intergenic 35.0%
TTATTCATGGTGAAAGACCA+TGG - chr2.3:8120597-8120616 MS.gene42846:intron 35.0%
TTTAACATATACCGTGTGGT+GGG - chr2.3:8120053-8120072 MS.gene42846:intron 35.0%
TTTAGATCATGTTCCATACG+TGG + chr2.3:8119016-8119035 None:intergenic 35.0%
TTTCCATGCAAATCAAAGCT+AGG + chr2.3:8121013-8121032 None:intergenic 35.0%
! AAATTGTCCACTGATTGTTG+TGG + chr2.3:8121059-8121078 None:intergenic 35.0%
! ATGTGCTGAGAAATGTGTTT+TGG - chr2.3:8118118-8118137 MS.gene42846:CDS 35.0%
!! TAAGAACTTGATGATGTTGC+TGG + chr2.3:8118204-8118223 None:intergenic 35.0%
!!! GTTTTATTTACAACGGTGAC+CGG + chr2.3:8120189-8120208 None:intergenic 35.0%
AAAATCTTGCAAGCAGCACA+AGG + chr2.3:8118089-8118108 None:intergenic 40.0%
AAGACTTTCTCCATCGGAAA+AGG - chr2.3:8119665-8119684 MS.gene42846:intron 40.0%
AATAAGTGATGTGTCACGTG+GGG + chr2.3:8118313-8118332 None:intergenic 40.0%
AATCCTTAACGAGTGCCTTA+AGG - chr2.3:8120375-8120394 MS.gene42846:intron 40.0%
ACAATGGTAGTTCCCTAACA+AGG - chr2.3:8118273-8118292 MS.gene42846:CDS 40.0%
ACGATGAGCAGTGGTAAATT+TGG + chr2.3:8118171-8118190 None:intergenic 40.0%
ATCATCTATTGCGAGACTGA+GGG + chr2.3:8119365-8119384 None:intergenic 40.0%
ATGTTCCATACGTGGTCAAA+TGG + chr2.3:8119008-8119027 None:intergenic 40.0%
CAATAGGAGGCAAGCAAATA+AGG + chr2.3:8119818-8119837 None:intergenic 40.0%
CTCATGTTGAGTTCAATAGG+AGG + chr2.3:8119831-8119850 None:intergenic 40.0%
CTGTGTCAAGTATTAAGGGA+CGG - chr2.3:8119589-8119608 MS.gene42846:intron 40.0%
GATAAATTGAGTCCCCGTTA+AGG + chr2.3:8118698-8118717 None:intergenic 40.0%
GCAAATCAAAGCTAGGAGAT+TGG + chr2.3:8121006-8121025 None:intergenic 40.0%
GCTTGTCTTGAACTCTCAAT+CGG + chr2.3:8120744-8120763 None:intergenic 40.0%
GGAGTCATTGAGTCCTTAAT+AGG + chr2.3:8118357-8118376 None:intergenic 40.0%
GGTAAATTTGGAAGGTTCAG+TGG + chr2.3:8118159-8118178 None:intergenic 40.0%
GTCCGAACTTTGAATTACCA+TGG + chr2.3:8120617-8120636 None:intergenic 40.0%
TAAGGACTCAATGACTCCAA+TGG - chr2.3:8118359-8118378 MS.gene42846:CDS 40.0%
TAGTTGTCTGTTCCTTAACG+GGG - chr2.3:8118683-8118702 MS.gene42846:intron 40.0%
TCATCAATAATATGGGGGCT+AGG - chr2.3:8119757-8119776 MS.gene42846:intron 40.0%
TCTCTCTCCTGAGTAACTAA+CGG + chr2.3:8118652-8118671 None:intergenic 40.0%
TGAATCTCCACAACAATCAG+TGG - chr2.3:8121049-8121068 MS.gene42846:CDS 40.0%
TGAGCAGTGGTAAATTTGGA+AGG + chr2.3:8118167-8118186 None:intergenic 40.0%
TTAGTTACTCAGGAGAGAGA+GGG - chr2.3:8118652-8118671 MS.gene42846:intron 40.0%
TTGTTAGGGAACTACCATTG+TGG + chr2.3:8118274-8118293 None:intergenic 40.0%
TTTCACCATTTGACCACGTA+TGG - chr2.3:8119000-8119019 MS.gene42846:intron 40.0%
! GATGCTCTAAGTACCTACAT+AGG - chr2.3:8118780-8118799 MS.gene42846:intron 40.0%
! GTACTTAGAGCATCTCCAAT+GGG + chr2.3:8118774-8118793 None:intergenic 40.0%
! TACTTAGAGCATCTCCAATG+GGG + chr2.3:8118773-8118792 None:intergenic 40.0%
!! TCTCCTAGCTTTGATTTGCA+TGG - chr2.3:8121007-8121026 MS.gene42846:intron 40.0%
!!! GAAGCTCATTGACTTGCTTT+TGG + chr2.3:8120929-8120948 None:intergenic 40.0%
AATTTGGAAGGTTCAGTGGG+AGG + chr2.3:8118155-8118174 None:intergenic 45.0%
ACCAAATACACGATGAGCAG+TGG + chr2.3:8118180-8118199 None:intergenic 45.0%
ACCACTGCTCATCGTGTATT+TGG - chr2.3:8118176-8118195 MS.gene42846:CDS 45.0%
AGCTGATGCAGTTAGTAGCA+TGG - chr2.3:8120839-8120858 MS.gene42846:intron 45.0%
ATTCATTGTGGGAGCCTCTT+TGG - chr2.3:8121150-8121169 MS.gene42846:CDS 45.0%
ATTTGGAAGGTTCAGTGGGA+GGG + chr2.3:8118154-8118173 None:intergenic 45.0%
CAAGGACTCATGACAACTTG+AGG + chr2.3:8118071-8118090 None:intergenic 45.0%
CACCTGCACATCCATATACA+GGG + chr2.3:8120893-8120912 None:intergenic 45.0%
CTACCATTGTGGATGCTCTT+AGG + chr2.3:8118263-8118282 None:intergenic 45.0%
CTCTCTCCTGAGTAACTAAC+GGG + chr2.3:8118651-8118670 None:intergenic 45.0%
GATCATCTATTGCGAGACTG+AGG + chr2.3:8119366-8119385 None:intergenic 45.0%
GGAGTGGTCCTTGTTAAGTA+AGG - chr2.3:8118744-8118763 MS.gene42846:intron 45.0%
GTCAAGTATTAAGGGACGGA+GGG - chr2.3:8119593-8119612 MS.gene42846:intron 45.0%
GTTAGTTACTCAGGAGAGAG+AGG - chr2.3:8118651-8118670 MS.gene42846:intron 45.0%
TGATAATCACTGCTGTAGGC+AGG + chr2.3:8121092-8121111 None:intergenic 45.0%
TGTCAAGTATTAAGGGACGG+AGG - chr2.3:8119592-8119611 MS.gene42846:intron 45.0%
TGTCACGTGGGGTCTATTTA+AGG + chr2.3:8118302-8118321 None:intergenic 45.0%
! ACTTAGAGCATCTCCAATGG+GGG + chr2.3:8118772-8118791 None:intergenic 45.0%
! GAGGCTCCCACAATGAATTT+TGG + chr2.3:8121148-8121167 None:intergenic 45.0%
! GGTACTTAGAGCATCTCCAA+TGG + chr2.3:8118775-8118794 None:intergenic 45.0%
! TGTCCTTAAGGCACTCGTTA+AGG + chr2.3:8120381-8120400 None:intergenic 45.0%
!! TAGCCTAAGAGCATCCACAA+TGG - chr2.3:8118257-8118276 MS.gene42846:CDS 45.0%
!!! GCTCATTGACTTGCTTTTGG+AGG + chr2.3:8120926-8120945 None:intergenic 45.0%
ATGGGGGCTAGGATTAGACA+GGG - chr2.3:8119768-8119787 MS.gene42846:intron 50.0%
CTCCAATGGAGGGTCCTTAA+CGG - chr2.3:8118721-8118740 MS.gene42846:intron 50.0%
GACCCTGTATATGGATGTGC+AGG - chr2.3:8120888-8120907 MS.gene42846:intron 50.0%
GCACCTGCACATCCATATAC+AGG + chr2.3:8120894-8120913 None:intergenic 50.0%
GGTTCAGTGGGAGGGAAATA+AGG + chr2.3:8118146-8118165 None:intergenic 50.0%
GTTAAGTAAGGACCCCCCAT+TGG - chr2.3:8118756-8118775 MS.gene42846:intron 50.0%
TATGGGGGCTAGGATTAGAC+AGG - chr2.3:8119767-8119786 MS.gene42846:intron 50.0%
TCCAATGGAGGGTCCTTAAC+GGG - chr2.3:8118722-8118741 MS.gene42846:intron 50.0%
TGGATGCTCTTAGGCTAGTG+TGG + chr2.3:8118254-8118273 None:intergenic 50.0%
TGGGGGGTCCTTACTTAACA+AGG + chr2.3:8118755-8118774 None:intergenic 50.0%
! CTTAGAGCATCTCCAATGGG+GGG + chr2.3:8118771-8118790 None:intergenic 50.0%
!! GCATCAGCTCTTTGAGACTC+TGG + chr2.3:8120828-8120847 None:intergenic 50.0%
AATGCAAGAGGCCCACCACA+CGG + chr2.3:8120067-8120086 None:intergenic 55.0%
ACAAGGACCACTCCCCGTTA+AGG + chr2.3:8118738-8118757 None:intergenic 55.0%
CCAATGGAGGGTCCTTAACG+GGG - chr2.3:8118723-8118742 MS.gene42846:intron 55.0%
CGTTAAGGACCCTCCATTGG+AGG + chr2.3:8118723-8118742 None:intergenic 55.0%
GGTAGCTCACGAGTTAGCTC+AGG + chr2.3:8119797-8119816 None:intergenic 55.0%
GTGGGACCCGTTAGTTACTC+AGG - chr2.3:8118642-8118661 MS.gene42846:intron 55.0%
CCCCGTTAAGGACCCTCCAT+TGG + chr2.3:8118726-8118745 None:intergenic 60.0%
GGAGGGTCCTTAACGGGGAG+TGG - chr2.3:8118728-8118747 MS.gene42846:intron 65.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 8118062 8121178 8118062 ID=MS.gene42846
chr2.3 mRNA 8118062 8121178 8118062 ID=MS.gene42846.t1;Parent=MS.gene42846
chr2.3 exon 8121014 8121178 8121014 ID=MS.gene42846.t1.exon1;Parent=MS.gene42846.t1
chr2.3 CDS 8121014 8121178 8121014 ID=cds.MS.gene42846.t1;Parent=MS.gene42846.t1
chr2.3 exon 8118062 8118421 8118062 ID=MS.gene42846.t1.exon2;Parent=MS.gene42846.t1
chr2.3 CDS 8118062 8118421 8118062 ID=cds.MS.gene42846.t1;Parent=MS.gene42846.t1
Gene Sequence

>MS.gene42846

ATGGCTCCTCAAGTTGTCATGAGTCCTTGTGCTGCTTGCAAGATTTTAAGAAGAAGATGTGCTGAGAAATGTGTTTTGGCACCTTATTTCCCTCCCACTGAACCTTCCAAATTTACCACTGCTCATCGTGTATTTGGTGCCAGCAACATCATCAAGTTCTTACAGGTAGTTTTACTTTACAATACAGGACCACACTAGCCTAAGAGCATCCACAATGGTAGTTCCCTAACAAGGACTCCTTAAATAGACCCCACGTGACACATCACTTATTTATAATTTTTTAATAAAAGTACCTATTAAGGACTCAATGACTCCAATGGCAATACACTAATAAGGACTCCAATGAAAAGTATTTAAATATGTCCCACTATCTTTACATATTAAACAAAAATAATTTATCTATTACTCATTTTTACAAGTGGGACCAAGTAGTACACATTTTATTACTTCTTTATGCAAGTGGGACCAAGTAGTACACATTTTATTACTTCTTTATGCAAGTGGGACCAAGTAGTACACATTTTATTACTTCTTTATGCAAGTGGGACCAAGTAGTACACATTTTATTACTTTTTTAAACGTGGGACCCGTTAGTTACTCAGGAGAGAGAGGGTCCTTATATAGTTGTCTGTTCCTTAACGGGGACTCAATTTATCTTCCTCCAATGGAGGGTCCTTAACGGGGAGTGGTCCTTGTTAAGTAAGGACCCCCCATTGGAGATGCTCTAAGTACCTACATAGGCCTATAAAATCTTGTGAATTTTTTCTTAAAAAAAAAAAAAATCCCGTGAATTCACAATGACATGTTAGATTTTAATTTGTTTAAGTTCAGAAATATTATTTTTGTCAAAGTTAATGTGGCACATCCGATTCCGTCAAATTCACCTAACTATTCACCTATTTTGATCTATAAAAAATGCACTGCACATTTGTTATATATTTCACCATTTGACCACGTATGGAACATGATCTAAACTAACGCTCTGAATCATGCTTGTGTCAATATGAAGAGACGTGATGAAGAATGAATAATAGATAACAAACATATTACTGTGCATAGACCATAGACCATTTGTTGACTATTGTATGATTTTCTATATATGGTATGTTGATGGGGATGAATAGATATGATAAGACTAGTCTCCTAATTTCTTCAAAAAAAAGACTAGTCTCCTAATTAATTTTGAATGATACCCTTAAACTAGTCTCACAAAAGATACAGTGCACATCAATCAATATAATTATAATTGCATATATTTTATTTTATTCCCTCTATTAAAGTAACACTTTACTATACTACTCCCTCAGTCTCGCAATAGATGATCCATTTGAAAATATGTAATTTTGACGTAACTTACTTTAACCATATTTCTCTACTAATATACAAATATAAATAATATCATATAAGATGTCGTTAGATTTGTCTCGATGAGTATTTTCAAAATATCAAATTTTCATAATTTTTTCTAATATATTATTCAAGATATTTAAGCTCAAAATTATGCATTGACATGTGTAATAAGGTCAACTGTGTCAAGTATTAAGGGACGGAGGGAGTATAATTTATTTTAATTTAGCTTATAATGCTACTATTACTATCTTTTAAGACTTTCTCCATCGGAAAAGTTTTTTTTTTTTGAAGGAATAAATTCATTGCATTTCATTTGCTAAAATATGCCAAATACATGTAGGTACATCATCAATAATATGGGGGCTAGGATTAGACAGGGCTGCCTGAGCTAACTCGTGAGCTACCTTATTTGCTTGCCTCCTATTGAACTCAACATGAGAGTTCTGAAATCTATCATCTAGTAGCTGTTTACAAGCAGTAATAATACACCCAAATTCGATAGAATTGACACAATCAACAACTCTTTTAAGACTTTCTCCATCGGAAAAGGTTGTTTTATTTTTATAGATAGTCAACCTCTAATATCTAGTAGAAATTAGAATGCAAATTCACTTAAGATAATGATTTTTCAACAACCTAAATTTAACATATACCGTGTGGTGGGCCTCTTGCATTAATTCTAACAAGAAAACCATTTAATACGCAAGACAATATAGTTGACATTTAAACATATTAAATTTGTCCTTTGAAAATTCAATTTCATAGATAATATTTCCGGTCACCGTTGTAAATAAAACTTCACATTTTAAATACATTAACAAAAAAATATTAACAAGTGTATTTAGAGCATTTGATAAGAAATTTAAAGTAGCAACCTTATCTTGGAAATTATGCATTTAACTTATTGAAAGATTAAAAACAACTTTTTTTTTACATGAAATTTTACAATTATTTCGTTTTTTGAATCCTTAACGAGTGCCTTAAGGACACTTGTTAGCATAACTCATTAAATAATTAATGTATCTAGTTTTTATTATAGATTAGATATATGAATTATTCATTGTATCTAAAAAAATGAAGTGTTACTTATAATAGTGACTGAATGGAGTAGTAATCAAAATGATTTTGACTATAGTATTTTGACATTAAATATATACTGTGACCAATTTTTTTGTTTTAAATAACTTATTCATGGTGAAAGACCATGGTAATTCAAAGTTCGGACAATAGTTAAGTAAAATTTAGGCATGATTATTTTTATCAAGAATCGAACTCGAATTTTCTCAAACAACTGTTATTAACCACTTGAGTCAAAGTTATATAGTGTGACCGATTGAGAGTTCAAGACAAGCATTGATTCAAGCACTCATAATTAATGATAAAATTATTCTCCTCCATTTTTTTCAGGAACTTCCAGAGTCTCAAAGAGCTGATGCAGTTAGTAGCATGGTTTATGAGGCTAGTGCAAGAATAAGAGACCCTGTATATGGATGTGCAGGTGCAATTTGTCACCTCCAAAAGCAAGTCAATGAGCTTCAAGCACAACTAGCTAAGTCACAAGCTGAGCTTATTAACATGCAATTACAACAATCCAATCTCCTAGCTTTGATTTGCATGGAAATGAAAGAAACTCCAAATGAATCTCCACAACAATCAGTGGACAATTTCATTTCAAGTCCTGCCTACAGCAGTGATTATCAAAATAATCTCAACTTCTTTGACGACAACACTAGCCAAAATTCATTGTGGGAGCCTCTTTGGACATGA
Protein sequence

>MS.gene42846.t1

MAPQVVMSPCAACKILRRRCAEKCVLAPYFPPTEPSKFTTAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQVNELQAQLAKSQAELINMQLQQSNLLALICMEMKETPNESPQQSVDNFISSPAYSSDYQNNLNFFDDNTSQNSLWEPLWT