Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene42902.t1 | PNX71799.1 | 68.5 | 273 | 56 | 4 | 196 | 447 | 317 | 580 | 3.50E-86 | 328.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene42902.t1 | Q9SZL8 | 32.7 | 254 | 148 | 6 | 14 | 251 | 45 | 291 | 1.5e-24 | 115.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene42902.t1 | A0A2K3KZX1 | 68.5 | 273 | 56 | 4 | 196 | 447 | 317 | 580 | 2.6e-86 | 328.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene42902.t1 | TF | FAR1 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene42902.t1 | MTR_0402s0040 | 41.714 | 175 | 97 | 4 | 43 | 214 | 25 | 197 | 2.28e-35 | 137 |
MS.gene42902.t1 | MTR_7g074790 | 34.857 | 175 | 90 | 4 | 40 | 211 | 6 | 159 | 2.17e-25 | 103 |
MS.gene42902.t1 | MTR_2g070590 | 44.762 | 105 | 54 | 4 | 43 | 144 | 16 | 119 | 6.01e-20 | 85.5 |
MS.gene42902.t1 | MTR_5g039760 | 34.503 | 171 | 83 | 3 | 46 | 213 | 12 | 156 | 2.49e-19 | 85.9 |
MS.gene42902.t1 | MTR_6g017200 | 33.333 | 153 | 84 | 5 | 1 | 136 | 1 | 152 | 5.08e-19 | 84.0 |
MS.gene42902.t1 | MTR_5g015480 | 38.788 | 165 | 80 | 8 | 14 | 163 | 19 | 177 | 8.31e-19 | 86.3 |
MS.gene42902.t1 | MTR_4g067290 | 34.524 | 168 | 91 | 6 | 44 | 199 | 56 | 216 | 9.75e-19 | 85.5 |
MS.gene42902.t1 | MTR_4g067290 | 34.524 | 168 | 91 | 6 | 44 | 199 | 76 | 236 | 1.13e-18 | 85.9 |
MS.gene42902.t1 | MTR_4g067290 | 34.524 | 168 | 91 | 6 | 44 | 199 | 116 | 276 | 2.67e-18 | 85.5 |
MS.gene42902.t1 | MTR_4g067290 | 33.735 | 166 | 93 | 6 | 44 | 199 | 56 | 214 | 5.65e-18 | 83.2 |
MS.gene42902.t1 | MTR_4g067290 | 33.735 | 166 | 93 | 6 | 44 | 199 | 76 | 234 | 6.96e-18 | 83.6 |
MS.gene42902.t1 | MTR_4g067290 | 33.735 | 166 | 93 | 6 | 44 | 199 | 74 | 232 | 7.70e-18 | 83.2 |
MS.gene42902.t1 | MTR_2g098920 | 41.748 | 103 | 56 | 3 | 44 | 144 | 80 | 180 | 3.58e-17 | 81.6 |
MS.gene42902.t1 | MTR_1g057920 | 43.956 | 91 | 47 | 3 | 44 | 131 | 34 | 123 | 7.65e-17 | 77.0 |
MS.gene42902.t1 | MTR_4g102720 | 27.547 | 265 | 139 | 7 | 39 | 300 | 2 | 216 | 1.09e-16 | 79.3 |
MS.gene42902.t1 | MTR_2g098880 | 36.290 | 124 | 65 | 5 | 33 | 147 | 49 | 167 | 6.16e-16 | 77.8 |
MS.gene42902.t1 | MTR_2g098880 | 36.290 | 124 | 65 | 5 | 33 | 147 | 61 | 179 | 8.36e-16 | 77.4 |
MS.gene42902.t1 | MTR_7g061980 | 35.345 | 116 | 69 | 3 | 41 | 153 | 7 | 119 | 1.86e-15 | 72.8 |
MS.gene42902.t1 | MTR_6g051425 | 27.604 | 192 | 134 | 1 | 45 | 231 | 18 | 209 | 2.03e-15 | 77.4 |
MS.gene42902.t1 | MTR_1g013060 | 31.609 | 174 | 109 | 3 | 39 | 204 | 19 | 190 | 7.33e-15 | 74.3 |
MS.gene42902.t1 | MTR_7g113010 | 33.333 | 150 | 77 | 5 | 25 | 168 | 437 | 569 | 2.93e-14 | 75.5 |
MS.gene42902.t1 | MTR_0137s0040 | 47.368 | 76 | 33 | 2 | 23 | 98 | 21 | 89 | 1.20e-13 | 67.4 |
MS.gene42902.t1 | MTR_5g076070 | 27.778 | 162 | 110 | 4 | 47 | 203 | 56 | 215 | 2.61e-13 | 70.5 |
MS.gene42902.t1 | MTR_1g070355 | 27.976 | 168 | 114 | 3 | 48 | 210 | 78 | 243 | 3.68e-13 | 72.0 |
MS.gene42902.t1 | MTR_2g014100 | 28.723 | 188 | 111 | 4 | 59 | 223 | 59 | 246 | 5.24e-13 | 69.3 |
MS.gene42902.t1 | MTR_3g006370 | 41.667 | 108 | 58 | 3 | 44 | 147 | 50 | 156 | 5.39e-13 | 68.6 |
MS.gene42902.t1 | MTR_7g446520 | 27.885 | 208 | 130 | 5 | 12 | 215 | 53 | 244 | 2.01e-12 | 68.6 |
MS.gene42902.t1 | MTR_4g035820 | 27.368 | 190 | 126 | 4 | 23 | 203 | 54 | 240 | 2.49e-11 | 66.2 |
MS.gene42902.t1 | MTR_3g450850 | 28.962 | 183 | 114 | 5 | 40 | 208 | 43 | 223 | 9.33e-11 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene42902.t1 | AT4G38180 | 32.677 | 254 | 148 | 6 | 14 | 251 | 45 | 291 | 1.18e-24 | 107 |
MS.gene42902.t1 | AT3G59470 | 43.137 | 102 | 56 | 2 | 44 | 144 | 70 | 170 | 3.07e-19 | 87.4 |
MS.gene42902.t1 | AT3G59470 | 43.137 | 102 | 56 | 2 | 44 | 144 | 70 | 170 | 3.07e-19 | 87.4 |
MS.gene42902.t1 | AT3G59470 | 43.137 | 102 | 56 | 2 | 44 | 144 | 82 | 182 | 4.34e-19 | 87.0 |
MS.gene42902.t1 | AT3G07500 | 42.735 | 117 | 59 | 4 | 44 | 158 | 33 | 143 | 1.62e-18 | 84.3 |
MS.gene42902.t1 | AT5G18960 | 39.516 | 124 | 63 | 2 | 22 | 145 | 21 | 132 | 9.88e-18 | 86.7 |
MS.gene42902.t1 | AT5G18960 | 39.604 | 101 | 49 | 2 | 44 | 144 | 211 | 299 | 6.40e-14 | 74.7 |
MS.gene42902.t1 | AT5G18960 | 39.516 | 124 | 63 | 2 | 22 | 145 | 21 | 132 | 9.88e-18 | 86.7 |
MS.gene42902.t1 | AT5G18960 | 39.604 | 101 | 49 | 2 | 44 | 144 | 211 | 299 | 6.40e-14 | 74.7 |
MS.gene42902.t1 | AT3G06250 | 34.839 | 155 | 84 | 5 | 22 | 172 | 7 | 148 | 1.62e-16 | 82.8 |
MS.gene42902.t1 | AT3G06250 | 40.594 | 101 | 48 | 2 | 44 | 144 | 190 | 278 | 2.18e-14 | 75.9 |
MS.gene42902.t1 | AT3G06250 | 34.839 | 155 | 84 | 5 | 22 | 172 | 7 | 148 | 1.62e-16 | 82.8 |
MS.gene42902.t1 | AT3G06250 | 40.594 | 101 | 48 | 2 | 44 | 144 | 190 | 278 | 2.18e-14 | 75.9 |
MS.gene42902.t1 | AT3G06250 | 34.839 | 155 | 84 | 5 | 22 | 172 | 7 | 148 | 1.62e-16 | 82.8 |
MS.gene42902.t1 | AT3G06250 | 40.594 | 101 | 48 | 2 | 44 | 144 | 190 | 278 | 2.18e-14 | 75.9 |
MS.gene42902.t1 | AT1G10240 | 32.796 | 186 | 117 | 4 | 27 | 205 | 32 | 216 | 3.12e-16 | 81.6 |
MS.gene42902.t1 | AT1G10240 | 32.796 | 186 | 117 | 4 | 27 | 205 | 32 | 216 | 3.12e-16 | 81.6 |
MS.gene42902.t1 | AT4G12850 | 37.398 | 123 | 73 | 3 | 44 | 164 | 11 | 131 | 2.18e-15 | 73.6 |
MS.gene42902.t1 | AT5G28530 | 29.480 | 173 | 109 | 5 | 44 | 207 | 55 | 223 | 2.23e-14 | 75.9 |
MS.gene42902.t1 | AT5G28530 | 29.480 | 173 | 109 | 5 | 44 | 207 | 55 | 223 | 2.34e-14 | 75.9 |
MS.gene42902.t1 | AT5G28530 | 29.480 | 173 | 109 | 5 | 44 | 207 | 55 | 223 | 2.88e-14 | 75.5 |
MS.gene42902.t1 | AT5G28530 | 29.480 | 173 | 109 | 5 | 44 | 207 | 55 | 223 | 3.14e-14 | 75.5 |
MS.gene42902.t1 | AT5G28530 | 29.480 | 173 | 109 | 5 | 44 | 207 | 55 | 223 | 3.14e-14 | 75.5 |
MS.gene42902.t1 | AT4G12850 | 38.614 | 101 | 60 | 2 | 44 | 144 | 11 | 109 | 3.69e-13 | 68.2 |
MS.gene42902.t1 | AT4G15090 | 29.493 | 217 | 130 | 6 | 41 | 252 | 48 | 246 | 4.28e-13 | 72.0 |
MS.gene42902.t1 | AT4G15090 | 29.493 | 217 | 130 | 6 | 41 | 252 | 48 | 246 | 4.28e-13 | 72.0 |
MS.gene42902.t1 | AT4G15090 | 29.493 | 217 | 130 | 6 | 41 | 252 | 48 | 246 | 4.28e-13 | 72.0 |
MS.gene42902.t1 | AT4G15090 | 29.493 | 217 | 130 | 6 | 41 | 252 | 48 | 246 | 4.28e-13 | 72.0 |
MS.gene42902.t1 | AT4G15090 | 29.493 | 217 | 130 | 6 | 41 | 252 | 48 | 246 | 4.28e-13 | 72.0 |
MS.gene42902.t1 | AT4G12850 | 38.614 | 101 | 60 | 2 | 44 | 144 | 11 | 109 | 5.39e-13 | 66.6 |
MS.gene42902.t1 | AT1G52520 | 39.091 | 110 | 58 | 4 | 44 | 150 | 85 | 188 | 4.76e-12 | 68.6 |
Find 83 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGTAATTTATGCTTACTTAT+AGG | 0.189034 | 6.4:+42559408 | None:intergenic |
GTAATTTATGCTTACTTATA+GGG | 0.213606 | 6.4:+42559409 | None:intergenic |
ACCTCTTCAATATGTACTTT+TGG | 0.218894 | 6.4:+42558077 | None:intergenic |
CGATTTGCCACAACTATCTT+TGG | 0.225821 | 6.4:+42557992 | None:intergenic |
CCATTAGAATTCATATTTAC+TGG | 0.226524 | 6.4:+42560220 | None:intergenic |
TTATGTAGTACCTGCATAAT+TGG | 0.248682 | 6.4:+42557620 | None:intergenic |
AATTTATATGCTGGCTTTGT+TGG | 0.254717 | 6.4:-42559666 | MS.gene42902:CDS |
TACATGATGGCTTGTCTTCA+TGG | 0.309415 | 6.4:-42557069 | MS.gene42902:CDS |
AATGACATGAATAACGAAAA+TGG | 0.314237 | 6.4:-42557334 | MS.gene42902:CDS |
GATGGTAAATCACGCATAAA+AGG | 0.338412 | 6.4:-42557734 | MS.gene42902:CDS |
GGAGAACACGGGGAAGAATT+TGG | 0.347555 | 6.4:-42557313 | MS.gene42902:CDS |
CTTCATTTCCTTCATCCTCT+TGG | 0.349382 | 6.4:+42559227 | None:intergenic |
CGGGAATCAAGTGGAAAATA+TGG | 0.357462 | 6.4:-42559474 | MS.gene42902:CDS |
TCAAACTCCATGCCAACATA+TGG | 0.373528 | 6.4:+42559717 | None:intergenic |
ATCATCTGTTACTATCTCAT+TGG | 0.379350 | 6.4:+42557796 | None:intergenic |
CCAGTAAATATGAATTCTAA+TGG | 0.398242 | 6.4:-42560220 | MS.gene42902:intron |
GGGATGCAAGCTCATGATTA+TGG | 0.401814 | 6.4:+42559430 | None:intergenic |
ACATGATGGCTTGTCTTCAT+GGG | 0.409074 | 6.4:-42557068 | MS.gene42902:CDS |
TCAATTTCAACCAAGTCCTT+TGG | 0.409112 | 6.4:-42557194 | MS.gene42902:intron |
AGCAATGTCAATGAACCATT+AGG | 0.429016 | 6.4:-42560259 | MS.gene42902:CDS |
AGCACATGTTGTCATTAGTC+GGG | 0.431183 | 6.4:-42559493 | MS.gene42902:CDS |
TCCACATCAACAACAAATCT+TGG | 0.437345 | 6.4:-42557836 | MS.gene42902:CDS |
GGTTTATCGCCACTCCCTAA+TGG | 0.444741 | 6.4:+42560244 | None:intergenic |
TCTCGTAAGGATATCAGAAC+TGG | 0.455278 | 6.4:-42559522 | MS.gene42902:CDS |
TCAAGCAGCTGAGGTAGAAA+TGG | 0.462861 | 6.4:-42559361 | MS.gene42902:CDS |
TCAAGCAAGGCTGCTGAAGA+TGG | 0.463547 | 6.4:-42557935 | MS.gene42902:CDS |
TAGCACATGTTGTCATTAGT+CGG | 0.467396 | 6.4:-42559494 | MS.gene42902:CDS |
TGGATGTGTGCTAGACAGTA+AGG | 0.470932 | 6.4:-42558035 | MS.gene42902:CDS |
GCAATGTCAATGAACCATTA+GGG | 0.473025 | 6.4:-42560258 | MS.gene42902:CDS |
CATTCTACCGATGCTTATCA+TGG | 0.489055 | 6.4:-42557289 | MS.gene42902:CDS |
GTAGAAATGGCAAATCGATC+TGG | 0.489212 | 6.4:-42559348 | MS.gene42902:CDS |
GATCTATGTCGCACTGCAGT+AGG | 0.499374 | 6.4:-42557962 | MS.gene42902:CDS |
AAATCTATATGCATGGTCTT+CGG | 0.500652 | 6.4:+42559692 | None:intergenic |
GCTTAAAATACCAAAGGACT+TGG | 0.501002 | 6.4:+42557184 | None:intergenic |
GCGTGAAGAACCATATCAAT+TGG | 0.502432 | 6.4:+42557030 | None:intergenic |
CTCAACAAATGTAGAGCCTC+AGG | 0.502446 | 6.4:-42557233 | MS.gene42902:CDS |
GTCTTCATGGGGTGGAAACA+AGG | 0.516471 | 6.4:-42557056 | MS.gene42902:CDS |
AACCATCATGCCAATTATGC+AGG | 0.524501 | 6.4:-42557630 | MS.gene42902:intron |
TTCTGCTGCTCAAGCAGCTG+AGG | 0.524786 | 6.4:-42559370 | MS.gene42902:CDS |
CAAACTCCATGCCAACATAT+GGG | 0.526793 | 6.4:+42559718 | None:intergenic |
TAATTTATGCTTACTTATAG+GGG | 0.532358 | 6.4:+42559410 | None:intergenic |
TAGGAATTTAGCTTACATGA+TGG | 0.535116 | 6.4:-42557082 | MS.gene42902:CDS |
TACCACTGTATCAAAAGCCA+TGG | 0.535613 | 6.4:-42557771 | MS.gene42902:CDS |
TTTAACTGCCAAGAGGATGA+AGG | 0.543689 | 6.4:-42559235 | MS.gene42902:CDS |
CAAGAGGATGAAGGAAATGA+AGG | 0.543859 | 6.4:-42559226 | MS.gene42902:CDS |
ATAAATTACCATCACAAAGG+AGG | 0.551834 | 6.4:-42559395 | MS.gene42902:CDS |
AGGATGAAGGAAATGAAGGA+AGG | 0.556547 | 6.4:-42559222 | MS.gene42902:intron |
GAAGATATAATCCCATATGT+TGG | 0.564964 | 6.4:-42559729 | MS.gene42902:CDS |
TAAATTACCATCACAAAGGA+GGG | 0.565763 | 6.4:-42559394 | MS.gene42902:CDS |
AAAAGTACATATTGAAGAGG+TGG | 0.567774 | 6.4:-42558075 | MS.gene42902:CDS |
GAGTCAATACGTTGGAGGGA+GGG | 0.571811 | 6.4:-42559295 | MS.gene42902:CDS |
TTATGAGTCAATACGTTGGA+GGG | 0.572691 | 6.4:-42559299 | MS.gene42902:CDS |
GTCAATGAACCATTAGGGAG+TGG | 0.572938 | 6.4:-42560253 | MS.gene42902:CDS |
TTTATGAGTCAATACGTTGG+AGG | 0.573484 | 6.4:-42559300 | MS.gene42902:CDS |
GTTGGAGGGAGGGAGAATGT+TGG | 0.573588 | 6.4:-42559285 | MS.gene42902:CDS |
GTAAATCACGCATAAAAGGC+AGG | 0.583524 | 6.4:-42557730 | MS.gene42902:CDS |
AATTATAAAATCTATATGCA+TGG | 0.584715 | 6.4:+42559685 | None:intergenic |
ACCAAGATTTGTTGTTGATG+TGG | 0.585966 | 6.4:+42557835 | None:intergenic |
CCCAAAAGTACATATTGAAG+AGG | 0.586430 | 6.4:-42558078 | MS.gene42902:CDS |
TATAATCCCATATGTTGGCA+TGG | 0.590560 | 6.4:-42559724 | MS.gene42902:CDS |
TGAGTCAATACGTTGGAGGG+AGG | 0.595045 | 6.4:-42559296 | MS.gene42902:CDS |
CATGATGGCTTGTCTTCATG+GGG | 0.595058 | 6.4:-42557067 | MS.gene42902:CDS |
TACCTGCATAATTGGCATGA+TGG | 0.603981 | 6.4:+42557628 | None:intergenic |
AACTCAGCAGATGGTGCCTG+AGG | 0.610239 | 6.4:+42557217 | None:intergenic |
GCAGAAACCCTCCTTTGTGA+TGG | 0.614369 | 6.4:+42559387 | None:intergenic |
TTAGAATTCATATTTACTGG+AGG | 0.621664 | 6.4:+42560223 | None:intergenic |
AGAAGATCCAAAGATAGTTG+TGG | 0.622671 | 6.4:-42557999 | MS.gene42902:CDS |
TGCAGTAGGAATATCAAGCA+AGG | 0.624129 | 6.4:-42557948 | MS.gene42902:CDS |
AATAACGAAAATGGAGAACA+CGG | 0.627085 | 6.4:-42557325 | MS.gene42902:CDS |
GAAATCATTTAACTGCCAAG+AGG | 0.627769 | 6.4:-42559242 | MS.gene42902:CDS |
AGAGGTGGACTAAACAAGCT+CGG | 0.635859 | 6.4:-42558060 | MS.gene42902:CDS |
GTCATTAGTCGGGAATCAAG+TGG | 0.642505 | 6.4:-42559483 | MS.gene42902:CDS |
ACCACTGTATCAAAAGCCAT+GGG | 0.643278 | 6.4:-42557770 | MS.gene42902:CDS |
AGCATAAATTACCATCACAA+AGG | 0.644723 | 6.4:-42559398 | MS.gene42902:CDS |
GATGGCTTGTCTTCATGGGG+TGG | 0.647236 | 6.4:-42557064 | MS.gene42902:CDS |
ATCAACAACAAATCTTGGTG+AGG | 0.650143 | 6.4:-42557831 | MS.gene42902:CDS |
ATAACGAAAATGGAGAACAC+GGG | 0.654047 | 6.4:-42557324 | MS.gene42902:CDS |
AGGCAGGCCTAAGAGTTGTG+TGG | 0.658380 | 6.4:-42557714 | MS.gene42902:CDS |
GGATGTGTGCTAGACAGTAA+GGG | 0.658517 | 6.4:-42558034 | MS.gene42902:CDS |
TGGACTAAACAAGCTCGGAG+TGG | 0.667189 | 6.4:-42558055 | MS.gene42902:CDS |
GAGTTTATGAGTCAATACGT+TGG | 0.676949 | 6.4:-42559303 | MS.gene42902:CDS |
TGAAATTGAAACTCAGCAGA+TGG | 0.678366 | 6.4:+42557208 | None:intergenic |
TAACGAAAATGGAGAACACG+GGG | 0.724055 | 6.4:-42557323 | MS.gene42902:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATTATAGTGTTATTATTAA+AGG | + | chr6.4:42557349-42557368 | None:intergenic | 10.0% |
!!! | CAATGTTTTTAAATATTTTT+AGG | - | chr6.4:42557158-42557177 | MS.gene42902:intron | 10.0% |
!! | AAATTTAATGGTTAAATCAT+CGG | + | chr6.4:42557521-42557540 | None:intergenic | 15.0% |
!! | AATTATAAAATCTATATGCA+TGG | + | chr6.4:42557646-42557665 | None:intergenic | 15.0% |
!! | CTATAAGAAAAAAGAAAAAT+GGG | - | chr6.4:42558732-42558751 | MS.gene42902:intron | 15.0% |
!! | TCTATAAGAAAAAAGAAAAA+TGG | - | chr6.4:42558731-42558750 | MS.gene42902:intron | 15.0% |
!!! | AGATTTTATAATTTATATGC+TGG | - | chr6.4:42557653-42557672 | MS.gene42902:CDS | 15.0% |
!!! | ATTTTCTTATTCACAATTAA+AGG | - | chr6.4:42557545-42557564 | MS.gene42902:intron | 15.0% |
!!! | TTTTCTTATTCACAATTAAA+GGG | - | chr6.4:42557546-42557565 | MS.gene42902:intron | 15.0% |
!!! | TTTTGGATTATGTTTATTTT+GGG | - | chr6.4:42558254-42558273 | MS.gene42902:intron | 15.0% |
!! | AAAAAATACAAAAGAAGCAA+AGG | - | chr6.4:42559639-42559658 | MS.gene42902:CDS | 20.0% |
!! | AAATTCTAACACATTATAAG+TGG | + | chr6.4:42558851-42558870 | None:intergenic | 20.0% |
!! | ATACTTAGAAATTGATAGAT+AGG | - | chr6.4:42557186-42557205 | MS.gene42902:intron | 20.0% |
!! | ATCTATTATAAACAAGCATT+CGG | + | chr6.4:42557494-42557513 | None:intergenic | 20.0% |
!! | GTAATTTATGCTTACTTATA+GGG | + | chr6.4:42557922-42557941 | None:intergenic | 20.0% |
!! | TAATTTATGCTTACTTATAG+GGG | + | chr6.4:42557921-42557940 | None:intergenic | 20.0% |
!!! | AAGCAAATTTTTTTAATCAG+TGG | - | chr6.4:42560206-42560225 | MS.gene42902:intron | 20.0% |
!!! | AAGTTTGTTTGTTTTAAAGA+AGG | - | chr6.4:42557749-42557768 | MS.gene42902:CDS | 20.0% |
!!! | AATATGTAGTAAGTTTTTTC+AGG | - | chr6.4:42559091-42559110 | MS.gene42902:intron | 20.0% |
!!! | ATATGTAGTAAGTTTTTTCA+GGG | - | chr6.4:42559092-42559111 | MS.gene42902:intron | 20.0% |
!!! | CATTTATGATTTTGAATATG+AGG | - | chr6.4:42558636-42558655 | MS.gene42902:intron | 20.0% |
!!! | GTTGTTTAAAACTTTTCTTA+AGG | - | chr6.4:42558420-42558439 | MS.gene42902:intron | 20.0% |
!!! | GTTTTGGATTATGTTTATTT+TGG | - | chr6.4:42558253-42558272 | MS.gene42902:intron | 20.0% |
!!! | TTTGGATTATGTTTATTTTG+GGG | - | chr6.4:42558255-42558274 | MS.gene42902:intron | 20.0% |
! | AATGACATGAATAACGAAAA+TGG | - | chr6.4:42559994-42560013 | MS.gene42902:intron | 25.0% |
! | CCAGTAAATATGAATTCTAA+TGG | - | chr6.4:42557108-42557127 | MS.gene42902:intron | 25.0% |
! | CCATTAGAATTCATATTTAC+TGG | + | chr6.4:42557111-42557130 | None:intergenic | 25.0% |
! | CTAGTTATAGTTGTTTATGT+TGG | - | chr6.4:42557263-42557282 | MS.gene42902:CDS | 25.0% |
! | GGTAATTTATGCTTACTTAT+AGG | + | chr6.4:42557923-42557942 | None:intergenic | 25.0% |
! | TAAACATTTAACATGAACGT+AGG | + | chr6.4:42557443-42557462 | None:intergenic | 25.0% |
! | TCTTGATATGTATGTGAAAA+TGG | + | chr6.4:42559832-42559851 | None:intergenic | 25.0% |
! | TGGGGAATAACTATTATATT+TGG | + | chr6.4:42559234-42559253 | None:intergenic | 25.0% |
! | TTAGAATTCATATTTACTGG+AGG | + | chr6.4:42557108-42557127 | None:intergenic | 25.0% |
!! | AAAAATGGGCTTTAGTATAT+GGG | - | chr6.4:42558746-42558765 | MS.gene42902:intron | 25.0% |
!! | ATCAAATCACAAACATTTTC+TGG | - | chr6.4:42558215-42558234 | MS.gene42902:intron | 25.0% |
!! | TCAAATCACAAACATTTTCT+GGG | - | chr6.4:42558216-42558235 | MS.gene42902:intron | 25.0% |
!!! | AGTTTTAGCAAGAAAATTGA+TGG | - | chr6.4:42559428-42559447 | MS.gene42902:CDS | 25.0% |
!!! | ATCAGTGGTATATTTTTTGT+TGG | - | chr6.4:42560221-42560240 | MS.gene42902:CDS | 25.0% |
!!! | GTTTTAAAGAAGGTTTTAAG+AGG | - | chr6.4:42557759-42557778 | MS.gene42902:CDS | 25.0% |
!!! | GTTTTAGCATTAGAAAAGAT+TGG | - | chr6.4:42557684-42557703 | MS.gene42902:CDS | 25.0% |
AAAAGAATCTGATCTCTGAA+AGG | + | chr6.4:42558596-42558615 | None:intergenic | 30.0% | |
AAATCTATATGCATGGTCTT+CGG | + | chr6.4:42557639-42557658 | None:intergenic | 30.0% | |
AATAACGAAAATGGAGAACA+CGG | - | chr6.4:42560003-42560022 | MS.gene42902:intron | 30.0% | |
AATCCAATAAAAGGAGCAAA+TGG | + | chr6.4:42558328-42558347 | None:intergenic | 30.0% | |
ACACACTACAAGAAAACAAA+GGG | - | chr6.4:42557303-42557322 | MS.gene42902:CDS | 30.0% | |
ACTTTGATCTTCAGAGTTAA+AGG | + | chr6.4:42559139-42559158 | None:intergenic | 30.0% | |
AGAAATTGATAGATAGGAGT+TGG | - | chr6.4:42557192-42557211 | MS.gene42902:intron | 30.0% | |
AGCATAAATTACCATCACAA+AGG | - | chr6.4:42557930-42557949 | MS.gene42902:CDS | 30.0% | |
ATAAATTACCATCACAAAGG+AGG | - | chr6.4:42557933-42557952 | MS.gene42902:CDS | 30.0% | |
ATATCACACTTTCTCTATGA+TGG | + | chr6.4:42558354-42558373 | None:intergenic | 30.0% | |
ATCATCTGTTACTATCTCAT+TGG | + | chr6.4:42559535-42559554 | None:intergenic | 30.0% | |
ATGATATCCATATTCAATGC+AGG | + | chr6.4:42558952-42558971 | None:intergenic | 30.0% | |
ATGGGTATAAAAAAGAAGGA+TGG | - | chr6.4:42559576-42559595 | MS.gene42902:CDS | 30.0% | |
GAAGATATAATCCCATATGT+TGG | - | chr6.4:42557599-42557618 | MS.gene42902:intron | 30.0% | |
GATAAATGACATGCGTTATA+AGG | - | chr6.4:42558891-42558910 | MS.gene42902:intron | 30.0% | |
TAAATTACCATCACAAAGGA+GGG | - | chr6.4:42557934-42557953 | MS.gene42902:CDS | 30.0% | |
TGATCTGTGAAAATTGTCTT+CGG | + | chr6.4:42558463-42558482 | None:intergenic | 30.0% | |
TGATGGTTGAATCCAATAAA+AGG | + | chr6.4:42558337-42558356 | None:intergenic | 30.0% | |
TTATGTAGTACCTGCATAAT+TGG | + | chr6.4:42559711-42559730 | None:intergenic | 30.0% | |
TTGAGTGCTTAAAATACCAA+AGG | + | chr6.4:42560153-42560172 | None:intergenic | 30.0% | |
! | AAAAGTACATATTGAAGAGG+TGG | - | chr6.4:42559253-42559272 | MS.gene42902:CDS | 30.0% |
! | ACCTCTTCAATATGTACTTT+TGG | + | chr6.4:42559254-42559273 | None:intergenic | 30.0% |
! | CATAGAGAAAGTGTGATATT+CGG | - | chr6.4:42558355-42558374 | MS.gene42902:intron | 30.0% |
! | CCTCTTCAATATGTACTTTT+GGG | + | chr6.4:42559253-42559272 | None:intergenic | 30.0% |
! | CTCTTCAATATGTACTTTTG+GGG | + | chr6.4:42559252-42559271 | None:intergenic | 30.0% |
! | GAAAAATGGGCTTTAGTATA+TGG | - | chr6.4:42558745-42558764 | MS.gene42902:intron | 30.0% |
! | GATCTTGCATCCATTTATTT+TGG | + | chr6.4:42558711-42558730 | None:intergenic | 30.0% |
! | TAGGAATTTAGCTTACATGA+TGG | - | chr6.4:42560246-42560265 | MS.gene42902:CDS | 30.0% |
!! | AATTTATATGCTGGCTTTGT+TGG | - | chr6.4:42557662-42557681 | MS.gene42902:CDS | 30.0% |
!!! | ACGTAGGTTTTTTTCTAGTT+TGG | + | chr6.4:42557427-42557446 | None:intergenic | 30.0% |
!!! | ATCCTTCTTTTTTATACCCA+TGG | + | chr6.4:42559577-42559596 | None:intergenic | 30.0% |
!!! | GGTATATTTTTTGTTGGTGT+AGG | - | chr6.4:42560227-42560246 | MS.gene42902:CDS | 30.0% |
!!! | TGTCGACTTTTTCAATTCAT+TGG | - | chr6.4:42559171-42559190 | MS.gene42902:intron | 30.0% |
ACGACCTTCACCAAAATAAA+TGG | - | chr6.4:42558698-42558717 | MS.gene42902:intron | 35.0% | |
AGAAGATCCAAAGATAGTTG+TGG | - | chr6.4:42559329-42559348 | MS.gene42902:CDS | 35.0% | |
AGCAATGTCAATGAACCATT+AGG | - | chr6.4:42557069-42557088 | MS.gene42902:CDS | 35.0% | |
AGCCATGGGTATAAAAAAGA+AGG | - | chr6.4:42559572-42559591 | MS.gene42902:CDS | 35.0% | |
ATAACGAAAATGGAGAACAC+GGG | - | chr6.4:42560004-42560023 | MS.gene42902:intron | 35.0% | |
ATCAACAACAAATCTTGGTG+AGG | - | chr6.4:42559497-42559516 | MS.gene42902:CDS | 35.0% | |
ATCATATCCCCTTCAAATGT+AGG | - | chr6.4:42559969-42559988 | MS.gene42902:intron | 35.0% | |
CAATTAAGTGAGAGCTTCAA+TGG | - | chr6.4:42558802-42558821 | MS.gene42902:intron | 35.0% | |
CACACACTACAAGAAAACAA+AGG | - | chr6.4:42557302-42557321 | MS.gene42902:CDS | 35.0% | |
CATATCATCGTTTATGCTTG+TGG | - | chr6.4:42558533-42558552 | MS.gene42902:intron | 35.0% | |
CGAACTAGAGAAAAGATAAC+TGG | + | chr6.4:42559006-42559025 | None:intergenic | 35.0% | |
CGATGATATGTTTCACTTTC+AGG | + | chr6.4:42558523-42558542 | None:intergenic | 35.0% | |
GAAATCATTTAACTGCCAAG+AGG | - | chr6.4:42558086-42558105 | MS.gene42902:CDS | 35.0% | |
GAGTTTATGAGTCAATACGT+TGG | - | chr6.4:42558025-42558044 | MS.gene42902:CDS | 35.0% | |
GATGGTAAATCACGCATAAA+AGG | - | chr6.4:42559594-42559613 | MS.gene42902:CDS | 35.0% | |
GCAATGTCAATGAACCATTA+GGG | - | chr6.4:42557070-42557089 | MS.gene42902:CDS | 35.0% | |
GCTTAAAATACCAAAGGACT+TGG | + | chr6.4:42560147-42560166 | None:intergenic | 35.0% | |
GTCGTAGATTCTTATTAGTG+CGG | + | chr6.4:42558306-42558325 | None:intergenic | 35.0% | |
TAGCACATGTTGTCATTAGT+CGG | - | chr6.4:42557834-42557853 | MS.gene42902:CDS | 35.0% | |
TATAATCCCATATGTTGGCA+TGG | - | chr6.4:42557604-42557623 | MS.gene42902:intron | 35.0% | |
TCAATTTCAACCAAGTCCTT+TGG | - | chr6.4:42560134-42560153 | MS.gene42902:intron | 35.0% | |
TCCACATCAACAACAAATCT+TGG | - | chr6.4:42559492-42559511 | MS.gene42902:CDS | 35.0% | |
TGAAATTGAAACTCAGCAGA+TGG | + | chr6.4:42560123-42560142 | None:intergenic | 35.0% | |
TTATGAGTCAATACGTTGGA+GGG | - | chr6.4:42558029-42558048 | MS.gene42902:CDS | 35.0% | |
TTTATGAGTCAATACGTTGG+AGG | - | chr6.4:42558028-42558047 | MS.gene42902:CDS | 35.0% | |
! | ACTTTTCTTAAGGCAATGTG+TGG | - | chr6.4:42558430-42558449 | MS.gene42902:intron | 35.0% |
! | CCCAAAAGTACATATTGAAG+AGG | - | chr6.4:42559250-42559269 | MS.gene42902:CDS | 35.0% |
! | CTTTTGTCCATGATAAGCAT+CGG | + | chr6.4:42560049-42560068 | None:intergenic | 35.0% |
! | GAGATCAGATTCTTTTGCTA+TGG | - | chr6.4:42558600-42558619 | MS.gene42902:intron | 35.0% |
! | GTCATTAGCCTACATTTGAA+GGG | + | chr6.4:42559980-42559999 | None:intergenic | 35.0% |
! | TCATTAGCCTACATTTGAAG+GGG | + | chr6.4:42559979-42559998 | None:intergenic | 35.0% |
! | TGTCATTAGCCTACATTTGA+AGG | + | chr6.4:42559981-42560000 | None:intergenic | 35.0% |
! | TTTTTCTCCACACAACTCTT+AGG | + | chr6.4:42559624-42559643 | None:intergenic | 35.0% |
!! | ACCAAGATTTGTTGTTGATG+TGG | + | chr6.4:42559496-42559515 | None:intergenic | 35.0% |
!! | GTTATCTTTTCTCTAGTTCG+TGG | - | chr6.4:42559006-42559025 | MS.gene42902:intron | 35.0% |
!! | TGATGAAAAAGTGTCTCGTA+AGG | - | chr6.4:42557793-42557812 | MS.gene42902:CDS | 35.0% |
!!! | GCATCCATTTATTTTGGTGA+AGG | + | chr6.4:42558705-42558724 | None:intergenic | 35.0% |
!!! | TAAGTTTTTTCAGGGACATG+AGG | - | chr6.4:42559100-42559119 | MS.gene42902:intron | 35.0% |
AAACTGCAGCATCATTTGAG+TGG | - | chr6.4:42558398-42558417 | MS.gene42902:intron | 40.0% | |
AACCATCATGCCAATTATGC+AGG | - | chr6.4:42559698-42559717 | MS.gene42902:CDS | 40.0% | |
AACCCGTGATGTACTAATAC+TGG | + | chr6.4:42559866-42559885 | None:intergenic | 40.0% | |
ACCACTGTATCAAAAGCCAT+GGG | - | chr6.4:42559558-42559577 | MS.gene42902:CDS | 40.0% | |
AGCACATGTTGTCATTAGTC+GGG | - | chr6.4:42557835-42557854 | MS.gene42902:CDS | 40.0% | |
AGCCAGTATTAGTACATCAC+GGG | - | chr6.4:42559861-42559880 | MS.gene42902:intron | 40.0% | |
AGGATGAAGGAAATGAAGGA+AGG | - | chr6.4:42558106-42558125 | MS.gene42902:intron | 40.0% | |
AGTATTAGTACATCACGGGT+TGG | - | chr6.4:42559865-42559884 | MS.gene42902:intron | 40.0% | |
CAAACTCCATGCCAACATAT+GGG | + | chr6.4:42557613-42557632 | None:intergenic | 40.0% | |
CAAGAGGATGAAGGAAATGA+AGG | - | chr6.4:42558102-42558121 | MS.gene42902:intron | 40.0% | |
CAGCCAGTATTAGTACATCA+CGG | - | chr6.4:42559860-42559879 | MS.gene42902:intron | 40.0% | |
CATGGCAAAAGCAATTTCAG+AGG | - | chr6.4:42558492-42558511 | MS.gene42902:intron | 40.0% | |
CATTCTACCGATGCTTATCA+TGG | - | chr6.4:42560039-42560058 | MS.gene42902:intron | 40.0% | |
CGATTTGCCACAACTATCTT+TGG | + | chr6.4:42559339-42559358 | None:intergenic | 40.0% | |
CGGGAATCAAGTGGAAAATA+TGG | - | chr6.4:42557854-42557873 | MS.gene42902:CDS | 40.0% | |
CTTCATTTCCTTCATCCTCT+TGG | + | chr6.4:42558104-42558123 | None:intergenic | 40.0% | |
GAAGATGCCTGCATTGAATA+TGG | - | chr6.4:42558942-42558961 | MS.gene42902:intron | 40.0% | |
GTAAATCACGCATAAAAGGC+AGG | - | chr6.4:42559598-42559617 | MS.gene42902:CDS | 40.0% | |
GTAGAAATGGCAAATCGATC+TGG | - | chr6.4:42557980-42557999 | MS.gene42902:CDS | 40.0% | |
TAACGAAAATGGAGAACACG+GGG | - | chr6.4:42560005-42560024 | MS.gene42902:intron | 40.0% | |
TACCACTGTATCAAAAGCCA+TGG | - | chr6.4:42559557-42559576 | MS.gene42902:CDS | 40.0% | |
TACCTGCATAATTGGCATGA+TGG | + | chr6.4:42559703-42559722 | None:intergenic | 40.0% | |
TATTCAATGCAGGCATCTTC+TGG | + | chr6.4:42558942-42558961 | None:intergenic | 40.0% | |
TCAAACTCCATGCCAACATA+TGG | + | chr6.4:42557614-42557633 | None:intergenic | 40.0% | |
TCTCGTAAGGATATCAGAAC+TGG | - | chr6.4:42557806-42557825 | MS.gene42902:CDS | 40.0% | |
TGCAGTAGGAATATCAAGCA+AGG | - | chr6.4:42559380-42559399 | MS.gene42902:CDS | 40.0% | |
TTTAACTGCCAAGAGGATGA+AGG | - | chr6.4:42558093-42558112 | MS.gene42902:intron | 40.0% | |
TTTCTGGGCAGATGCTAAAA+TGG | - | chr6.4:42558231-42558250 | MS.gene42902:intron | 40.0% | |
! | ACATGATGGCTTGTCTTCAT+GGG | - | chr6.4:42560260-42560279 | MS.gene42902:CDS | 40.0% |
! | ATAGATAGGAGTTGGTCAGT+AGG | - | chr6.4:42557200-42557219 | MS.gene42902:CDS | 40.0% |
! | CGACCATTTGCTCCTTTTAT+TGG | - | chr6.4:42558322-42558341 | MS.gene42902:intron | 40.0% |
! | GGCAGATGCTAAAATGGTTT+TGG | - | chr6.4:42558237-42558256 | MS.gene42902:intron | 40.0% |
! | TACATGATGGCTTGTCTTCA+TGG | - | chr6.4:42560259-42560278 | MS.gene42902:CDS | 40.0% |
!!! | CTCTGAAATTGCTTTTGCCA+TGG | + | chr6.4:42558494-42558513 | None:intergenic | 40.0% |
AGGATGACTTTCTTGCAGCT+TGG | - | chr6.4:42558656-42558675 | MS.gene42902:intron | 45.0% | |
CTCAACAAATGTAGAGCCTC+AGG | - | chr6.4:42560095-42560114 | MS.gene42902:intron | 45.0% | |
GGATGTGTGCTAGACAGTAA+GGG | - | chr6.4:42559294-42559313 | MS.gene42902:CDS | 45.0% | |
GGGATGCAAGCTCATGATTA+TGG | + | chr6.4:42557901-42557920 | None:intergenic | 45.0% | |
GTCAATGAACCATTAGGGAG+TGG | - | chr6.4:42557075-42557094 | MS.gene42902:CDS | 45.0% | |
GTCATTAGTCGGGAATCAAG+TGG | - | chr6.4:42557845-42557864 | MS.gene42902:CDS | 45.0% | |
GTTGGTCAGTAGGTTAGAGA+TGG | - | chr6.4:42557210-42557229 | MS.gene42902:CDS | 45.0% | |
TCAAGCAGCTGAGGTAGAAA+TGG | - | chr6.4:42557967-42557986 | MS.gene42902:CDS | 45.0% | |
TGGATGTGTGCTAGACAGTA+AGG | - | chr6.4:42559293-42559312 | MS.gene42902:CDS | 45.0% | |
! | ACCCATGGCTTTTGATACAG+TGG | + | chr6.4:42559562-42559581 | None:intergenic | 45.0% |
! | CATGATGGCTTGTCTTCATG+GGG | - | chr6.4:42560261-42560280 | MS.gene42902:CDS | 45.0% |
! | CTCGAAGAGCATGACAACAA+AGG | + | chr6.4:42559200-42559219 | None:intergenic | 45.0% |
! | GGGTGAAACACATTTTCAGC+TGG | - | chr6.4:42558766-42558785 | MS.gene42902:intron | 45.0% |
!! | AGAGGTGGACTAAACAAGCT+CGG | - | chr6.4:42559268-42559287 | MS.gene42902:CDS | 45.0% |
!! | AAGAAAATATATAAATTTAA+TGG | + | chr6.4:42557533-42557552 | None:intergenic | 5.0% |
CACAGATCAAGATGCTGCCA+TGG | - | chr6.4:42558474-42558493 | MS.gene42902:intron | 50.0% | |
GAGTCAATACGTTGGAGGGA+GGG | - | chr6.4:42558033-42558052 | MS.gene42902:CDS | 50.0% | |
GATCTATGTCGCACTGCAGT+AGG | - | chr6.4:42559366-42559385 | MS.gene42902:CDS | 50.0% | |
GCAGAAACCCTCCTTTGTGA+TGG | + | chr6.4:42557944-42557963 | None:intergenic | 50.0% | |
GGAGAACACGGGGAAGAATT+TGG | - | chr6.4:42560015-42560034 | MS.gene42902:intron | 50.0% | |
GGTTTATCGCCACTCCCTAA+TGG | + | chr6.4:42557087-42557106 | None:intergenic | 50.0% | |
GTCTTCATGGGGTGGAAACA+AGG | - | chr6.4:42560272-42560291 | MS.gene42902:CDS | 50.0% | |
TCAAGCAAGGCTGCTGAAGA+TGG | - | chr6.4:42559393-42559412 | MS.gene42902:CDS | 50.0% | |
TGAGTCAATACGTTGGAGGG+AGG | - | chr6.4:42558032-42558051 | MS.gene42902:CDS | 50.0% | |
TGGACTAAACAAGCTCGGAG+TGG | - | chr6.4:42559273-42559292 | MS.gene42902:CDS | 50.0% | |
AACTCAGCAGATGGTGCCTG+AGG | + | chr6.4:42560114-42560133 | None:intergenic | 55.0% | |
AGGCAGGCCTAAGAGTTGTG+TGG | - | chr6.4:42559614-42559633 | MS.gene42902:CDS | 55.0% | |
GTTGGAGGGAGGGAGAATGT+TGG | - | chr6.4:42558043-42558062 | MS.gene42902:CDS | 55.0% | |
TTCTGCTGCTCAAGCAGCTG+AGG | - | chr6.4:42557958-42557977 | MS.gene42902:CDS | 55.0% | |
! | GATGGCTTGTCTTCATGGGG+TGG | - | chr6.4:42560264-42560283 | MS.gene42902:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.4 | gene | 42557045 | 42560305 | 42557045 | ID=MS.gene42902 |
chr6.4 | mRNA | 42557045 | 42560305 | 42557045 | ID=MS.gene42902.t1;Parent=MS.gene42902 |
chr6.4 | exon | 42560221 | 42560305 | 42560221 | ID=MS.gene42902.t1.exon1;Parent=MS.gene42902.t1 |
chr6.4 | CDS | 42560221 | 42560305 | 42560221 | ID=cds.MS.gene42902.t1;Parent=MS.gene42902.t1 |
chr6.4 | exon | 42559223 | 42559783 | 42559223 | ID=MS.gene42902.t1.exon2;Parent=MS.gene42902.t1 |
chr6.4 | CDS | 42559223 | 42559783 | 42559223 | ID=cds.MS.gene42902.t1;Parent=MS.gene42902.t1 |
chr6.4 | exon | 42557631 | 42558106 | 42557631 | ID=MS.gene42902.t1.exon3;Parent=MS.gene42902.t1 |
chr6.4 | CDS | 42557631 | 42558106 | 42557631 | ID=cds.MS.gene42902.t1;Parent=MS.gene42902.t1 |
chr6.4 | exon | 42557195 | 42557359 | 42557195 | ID=MS.gene42902.t1.exon4;Parent=MS.gene42902.t1 |
chr6.4 | CDS | 42557195 | 42557359 | 42557195 | ID=cds.MS.gene42902.t1;Parent=MS.gene42902.t1 |
chr6.4 | exon | 42557045 | 42557101 | 42557045 | ID=MS.gene42902.t1.exon5;Parent=MS.gene42902.t1 |
chr6.4 | CDS | 42557045 | 42557101 | 42557045 | ID=cds.MS.gene42902.t1;Parent=MS.gene42902.t1 |
Gene Sequence |
Protein sequence |