AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene42902


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene42902.t1 MTR_0402s0040 41.714 175 97 4 43 214 25 197 2.28e-35 137
MS.gene42902.t1 MTR_7g074790 34.857 175 90 4 40 211 6 159 2.17e-25 103
MS.gene42902.t1 MTR_2g070590 44.762 105 54 4 43 144 16 119 6.01e-20 85.5
MS.gene42902.t1 MTR_5g039760 34.503 171 83 3 46 213 12 156 2.49e-19 85.9
MS.gene42902.t1 MTR_6g017200 33.333 153 84 5 1 136 1 152 5.08e-19 84.0
MS.gene42902.t1 MTR_5g015480 38.788 165 80 8 14 163 19 177 8.31e-19 86.3
MS.gene42902.t1 MTR_4g067290 34.524 168 91 6 44 199 56 216 9.75e-19 85.5
MS.gene42902.t1 MTR_4g067290 34.524 168 91 6 44 199 76 236 1.13e-18 85.9
MS.gene42902.t1 MTR_4g067290 34.524 168 91 6 44 199 116 276 2.67e-18 85.5
MS.gene42902.t1 MTR_4g067290 33.735 166 93 6 44 199 56 214 5.65e-18 83.2
MS.gene42902.t1 MTR_4g067290 33.735 166 93 6 44 199 76 234 6.96e-18 83.6
MS.gene42902.t1 MTR_4g067290 33.735 166 93 6 44 199 74 232 7.70e-18 83.2
MS.gene42902.t1 MTR_2g098920 41.748 103 56 3 44 144 80 180 3.58e-17 81.6
MS.gene42902.t1 MTR_1g057920 43.956 91 47 3 44 131 34 123 7.65e-17 77.0
MS.gene42902.t1 MTR_4g102720 27.547 265 139 7 39 300 2 216 1.09e-16 79.3
MS.gene42902.t1 MTR_2g098880 36.290 124 65 5 33 147 49 167 6.16e-16 77.8
MS.gene42902.t1 MTR_2g098880 36.290 124 65 5 33 147 61 179 8.36e-16 77.4
MS.gene42902.t1 MTR_7g061980 35.345 116 69 3 41 153 7 119 1.86e-15 72.8
MS.gene42902.t1 MTR_6g051425 27.604 192 134 1 45 231 18 209 2.03e-15 77.4
MS.gene42902.t1 MTR_1g013060 31.609 174 109 3 39 204 19 190 7.33e-15 74.3
MS.gene42902.t1 MTR_7g113010 33.333 150 77 5 25 168 437 569 2.93e-14 75.5
MS.gene42902.t1 MTR_0137s0040 47.368 76 33 2 23 98 21 89 1.20e-13 67.4
MS.gene42902.t1 MTR_5g076070 27.778 162 110 4 47 203 56 215 2.61e-13 70.5
MS.gene42902.t1 MTR_1g070355 27.976 168 114 3 48 210 78 243 3.68e-13 72.0
MS.gene42902.t1 MTR_2g014100 28.723 188 111 4 59 223 59 246 5.24e-13 69.3
MS.gene42902.t1 MTR_3g006370 41.667 108 58 3 44 147 50 156 5.39e-13 68.6
MS.gene42902.t1 MTR_7g446520 27.885 208 130 5 12 215 53 244 2.01e-12 68.6
MS.gene42902.t1 MTR_4g035820 27.368 190 126 4 23 203 54 240 2.49e-11 66.2
MS.gene42902.t1 MTR_3g450850 28.962 183 114 5 40 208 43 223 9.33e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene42902.t1 AT4G38180 32.677 254 148 6 14 251 45 291 1.18e-24 107
MS.gene42902.t1 AT3G59470 43.137 102 56 2 44 144 70 170 3.07e-19 87.4
MS.gene42902.t1 AT3G59470 43.137 102 56 2 44 144 70 170 3.07e-19 87.4
MS.gene42902.t1 AT3G59470 43.137 102 56 2 44 144 82 182 4.34e-19 87.0
MS.gene42902.t1 AT3G07500 42.735 117 59 4 44 158 33 143 1.62e-18 84.3
MS.gene42902.t1 AT5G18960 39.516 124 63 2 22 145 21 132 9.88e-18 86.7
MS.gene42902.t1 AT5G18960 39.604 101 49 2 44 144 211 299 6.40e-14 74.7
MS.gene42902.t1 AT5G18960 39.516 124 63 2 22 145 21 132 9.88e-18 86.7
MS.gene42902.t1 AT5G18960 39.604 101 49 2 44 144 211 299 6.40e-14 74.7
MS.gene42902.t1 AT3G06250 34.839 155 84 5 22 172 7 148 1.62e-16 82.8
MS.gene42902.t1 AT3G06250 40.594 101 48 2 44 144 190 278 2.18e-14 75.9
MS.gene42902.t1 AT3G06250 34.839 155 84 5 22 172 7 148 1.62e-16 82.8
MS.gene42902.t1 AT3G06250 40.594 101 48 2 44 144 190 278 2.18e-14 75.9
MS.gene42902.t1 AT3G06250 34.839 155 84 5 22 172 7 148 1.62e-16 82.8
MS.gene42902.t1 AT3G06250 40.594 101 48 2 44 144 190 278 2.18e-14 75.9
MS.gene42902.t1 AT1G10240 32.796 186 117 4 27 205 32 216 3.12e-16 81.6
MS.gene42902.t1 AT1G10240 32.796 186 117 4 27 205 32 216 3.12e-16 81.6
MS.gene42902.t1 AT4G12850 37.398 123 73 3 44 164 11 131 2.18e-15 73.6
MS.gene42902.t1 AT5G28530 29.480 173 109 5 44 207 55 223 2.23e-14 75.9
MS.gene42902.t1 AT5G28530 29.480 173 109 5 44 207 55 223 2.34e-14 75.9
MS.gene42902.t1 AT5G28530 29.480 173 109 5 44 207 55 223 2.88e-14 75.5
MS.gene42902.t1 AT5G28530 29.480 173 109 5 44 207 55 223 3.14e-14 75.5
MS.gene42902.t1 AT5G28530 29.480 173 109 5 44 207 55 223 3.14e-14 75.5
MS.gene42902.t1 AT4G12850 38.614 101 60 2 44 144 11 109 3.69e-13 68.2
MS.gene42902.t1 AT4G15090 29.493 217 130 6 41 252 48 246 4.28e-13 72.0
MS.gene42902.t1 AT4G15090 29.493 217 130 6 41 252 48 246 4.28e-13 72.0
MS.gene42902.t1 AT4G15090 29.493 217 130 6 41 252 48 246 4.28e-13 72.0
MS.gene42902.t1 AT4G15090 29.493 217 130 6 41 252 48 246 4.28e-13 72.0
MS.gene42902.t1 AT4G15090 29.493 217 130 6 41 252 48 246 4.28e-13 72.0
MS.gene42902.t1 AT4G12850 38.614 101 60 2 44 144 11 109 5.39e-13 66.6
MS.gene42902.t1 AT1G52520 39.091 110 58 4 44 150 85 188 4.76e-12 68.6

Find 83 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTAATTTATGCTTACTTAT+AGG 0.189034 6.4:+42559408 None:intergenic
GTAATTTATGCTTACTTATA+GGG 0.213606 6.4:+42559409 None:intergenic
ACCTCTTCAATATGTACTTT+TGG 0.218894 6.4:+42558077 None:intergenic
CGATTTGCCACAACTATCTT+TGG 0.225821 6.4:+42557992 None:intergenic
CCATTAGAATTCATATTTAC+TGG 0.226524 6.4:+42560220 None:intergenic
TTATGTAGTACCTGCATAAT+TGG 0.248682 6.4:+42557620 None:intergenic
AATTTATATGCTGGCTTTGT+TGG 0.254717 6.4:-42559666 MS.gene42902:CDS
TACATGATGGCTTGTCTTCA+TGG 0.309415 6.4:-42557069 MS.gene42902:CDS
AATGACATGAATAACGAAAA+TGG 0.314237 6.4:-42557334 MS.gene42902:CDS
GATGGTAAATCACGCATAAA+AGG 0.338412 6.4:-42557734 MS.gene42902:CDS
GGAGAACACGGGGAAGAATT+TGG 0.347555 6.4:-42557313 MS.gene42902:CDS
CTTCATTTCCTTCATCCTCT+TGG 0.349382 6.4:+42559227 None:intergenic
CGGGAATCAAGTGGAAAATA+TGG 0.357462 6.4:-42559474 MS.gene42902:CDS
TCAAACTCCATGCCAACATA+TGG 0.373528 6.4:+42559717 None:intergenic
ATCATCTGTTACTATCTCAT+TGG 0.379350 6.4:+42557796 None:intergenic
CCAGTAAATATGAATTCTAA+TGG 0.398242 6.4:-42560220 MS.gene42902:intron
GGGATGCAAGCTCATGATTA+TGG 0.401814 6.4:+42559430 None:intergenic
ACATGATGGCTTGTCTTCAT+GGG 0.409074 6.4:-42557068 MS.gene42902:CDS
TCAATTTCAACCAAGTCCTT+TGG 0.409112 6.4:-42557194 MS.gene42902:intron
AGCAATGTCAATGAACCATT+AGG 0.429016 6.4:-42560259 MS.gene42902:CDS
AGCACATGTTGTCATTAGTC+GGG 0.431183 6.4:-42559493 MS.gene42902:CDS
TCCACATCAACAACAAATCT+TGG 0.437345 6.4:-42557836 MS.gene42902:CDS
GGTTTATCGCCACTCCCTAA+TGG 0.444741 6.4:+42560244 None:intergenic
TCTCGTAAGGATATCAGAAC+TGG 0.455278 6.4:-42559522 MS.gene42902:CDS
TCAAGCAGCTGAGGTAGAAA+TGG 0.462861 6.4:-42559361 MS.gene42902:CDS
TCAAGCAAGGCTGCTGAAGA+TGG 0.463547 6.4:-42557935 MS.gene42902:CDS
TAGCACATGTTGTCATTAGT+CGG 0.467396 6.4:-42559494 MS.gene42902:CDS
TGGATGTGTGCTAGACAGTA+AGG 0.470932 6.4:-42558035 MS.gene42902:CDS
GCAATGTCAATGAACCATTA+GGG 0.473025 6.4:-42560258 MS.gene42902:CDS
CATTCTACCGATGCTTATCA+TGG 0.489055 6.4:-42557289 MS.gene42902:CDS
GTAGAAATGGCAAATCGATC+TGG 0.489212 6.4:-42559348 MS.gene42902:CDS
GATCTATGTCGCACTGCAGT+AGG 0.499374 6.4:-42557962 MS.gene42902:CDS
AAATCTATATGCATGGTCTT+CGG 0.500652 6.4:+42559692 None:intergenic
GCTTAAAATACCAAAGGACT+TGG 0.501002 6.4:+42557184 None:intergenic
GCGTGAAGAACCATATCAAT+TGG 0.502432 6.4:+42557030 None:intergenic
CTCAACAAATGTAGAGCCTC+AGG 0.502446 6.4:-42557233 MS.gene42902:CDS
GTCTTCATGGGGTGGAAACA+AGG 0.516471 6.4:-42557056 MS.gene42902:CDS
AACCATCATGCCAATTATGC+AGG 0.524501 6.4:-42557630 MS.gene42902:intron
TTCTGCTGCTCAAGCAGCTG+AGG 0.524786 6.4:-42559370 MS.gene42902:CDS
CAAACTCCATGCCAACATAT+GGG 0.526793 6.4:+42559718 None:intergenic
TAATTTATGCTTACTTATAG+GGG 0.532358 6.4:+42559410 None:intergenic
TAGGAATTTAGCTTACATGA+TGG 0.535116 6.4:-42557082 MS.gene42902:CDS
TACCACTGTATCAAAAGCCA+TGG 0.535613 6.4:-42557771 MS.gene42902:CDS
TTTAACTGCCAAGAGGATGA+AGG 0.543689 6.4:-42559235 MS.gene42902:CDS
CAAGAGGATGAAGGAAATGA+AGG 0.543859 6.4:-42559226 MS.gene42902:CDS
ATAAATTACCATCACAAAGG+AGG 0.551834 6.4:-42559395 MS.gene42902:CDS
AGGATGAAGGAAATGAAGGA+AGG 0.556547 6.4:-42559222 MS.gene42902:intron
GAAGATATAATCCCATATGT+TGG 0.564964 6.4:-42559729 MS.gene42902:CDS
TAAATTACCATCACAAAGGA+GGG 0.565763 6.4:-42559394 MS.gene42902:CDS
AAAAGTACATATTGAAGAGG+TGG 0.567774 6.4:-42558075 MS.gene42902:CDS
GAGTCAATACGTTGGAGGGA+GGG 0.571811 6.4:-42559295 MS.gene42902:CDS
TTATGAGTCAATACGTTGGA+GGG 0.572691 6.4:-42559299 MS.gene42902:CDS
GTCAATGAACCATTAGGGAG+TGG 0.572938 6.4:-42560253 MS.gene42902:CDS
TTTATGAGTCAATACGTTGG+AGG 0.573484 6.4:-42559300 MS.gene42902:CDS
GTTGGAGGGAGGGAGAATGT+TGG 0.573588 6.4:-42559285 MS.gene42902:CDS
GTAAATCACGCATAAAAGGC+AGG 0.583524 6.4:-42557730 MS.gene42902:CDS
AATTATAAAATCTATATGCA+TGG 0.584715 6.4:+42559685 None:intergenic
ACCAAGATTTGTTGTTGATG+TGG 0.585966 6.4:+42557835 None:intergenic
CCCAAAAGTACATATTGAAG+AGG 0.586430 6.4:-42558078 MS.gene42902:CDS
TATAATCCCATATGTTGGCA+TGG 0.590560 6.4:-42559724 MS.gene42902:CDS
TGAGTCAATACGTTGGAGGG+AGG 0.595045 6.4:-42559296 MS.gene42902:CDS
CATGATGGCTTGTCTTCATG+GGG 0.595058 6.4:-42557067 MS.gene42902:CDS
TACCTGCATAATTGGCATGA+TGG 0.603981 6.4:+42557628 None:intergenic
AACTCAGCAGATGGTGCCTG+AGG 0.610239 6.4:+42557217 None:intergenic
GCAGAAACCCTCCTTTGTGA+TGG 0.614369 6.4:+42559387 None:intergenic
TTAGAATTCATATTTACTGG+AGG 0.621664 6.4:+42560223 None:intergenic
AGAAGATCCAAAGATAGTTG+TGG 0.622671 6.4:-42557999 MS.gene42902:CDS
TGCAGTAGGAATATCAAGCA+AGG 0.624129 6.4:-42557948 MS.gene42902:CDS
AATAACGAAAATGGAGAACA+CGG 0.627085 6.4:-42557325 MS.gene42902:CDS
GAAATCATTTAACTGCCAAG+AGG 0.627769 6.4:-42559242 MS.gene42902:CDS
AGAGGTGGACTAAACAAGCT+CGG 0.635859 6.4:-42558060 MS.gene42902:CDS
GTCATTAGTCGGGAATCAAG+TGG 0.642505 6.4:-42559483 MS.gene42902:CDS
ACCACTGTATCAAAAGCCAT+GGG 0.643278 6.4:-42557770 MS.gene42902:CDS
AGCATAAATTACCATCACAA+AGG 0.644723 6.4:-42559398 MS.gene42902:CDS
GATGGCTTGTCTTCATGGGG+TGG 0.647236 6.4:-42557064 MS.gene42902:CDS
ATCAACAACAAATCTTGGTG+AGG 0.650143 6.4:-42557831 MS.gene42902:CDS
ATAACGAAAATGGAGAACAC+GGG 0.654047 6.4:-42557324 MS.gene42902:CDS
AGGCAGGCCTAAGAGTTGTG+TGG 0.658380 6.4:-42557714 MS.gene42902:CDS
GGATGTGTGCTAGACAGTAA+GGG 0.658517 6.4:-42558034 MS.gene42902:CDS
TGGACTAAACAAGCTCGGAG+TGG 0.667189 6.4:-42558055 MS.gene42902:CDS
GAGTTTATGAGTCAATACGT+TGG 0.676949 6.4:-42559303 MS.gene42902:CDS
TGAAATTGAAACTCAGCAGA+TGG 0.678366 6.4:+42557208 None:intergenic
TAACGAAAATGGAGAACACG+GGG 0.724055 6.4:-42557323 MS.gene42902:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTATAGTGTTATTATTAA+AGG + chr6.4:42557349-42557368 None:intergenic 10.0%
!!! CAATGTTTTTAAATATTTTT+AGG - chr6.4:42557158-42557177 MS.gene42902:intron 10.0%
!! AAATTTAATGGTTAAATCAT+CGG + chr6.4:42557521-42557540 None:intergenic 15.0%
!! AATTATAAAATCTATATGCA+TGG + chr6.4:42557646-42557665 None:intergenic 15.0%
!! CTATAAGAAAAAAGAAAAAT+GGG - chr6.4:42558732-42558751 MS.gene42902:intron 15.0%
!! TCTATAAGAAAAAAGAAAAA+TGG - chr6.4:42558731-42558750 MS.gene42902:intron 15.0%
!!! AGATTTTATAATTTATATGC+TGG - chr6.4:42557653-42557672 MS.gene42902:CDS 15.0%
!!! ATTTTCTTATTCACAATTAA+AGG - chr6.4:42557545-42557564 MS.gene42902:intron 15.0%
!!! TTTTCTTATTCACAATTAAA+GGG - chr6.4:42557546-42557565 MS.gene42902:intron 15.0%
!!! TTTTGGATTATGTTTATTTT+GGG - chr6.4:42558254-42558273 MS.gene42902:intron 15.0%
!! AAAAAATACAAAAGAAGCAA+AGG - chr6.4:42559639-42559658 MS.gene42902:CDS 20.0%
!! AAATTCTAACACATTATAAG+TGG + chr6.4:42558851-42558870 None:intergenic 20.0%
!! ATACTTAGAAATTGATAGAT+AGG - chr6.4:42557186-42557205 MS.gene42902:intron 20.0%
!! ATCTATTATAAACAAGCATT+CGG + chr6.4:42557494-42557513 None:intergenic 20.0%
!! GTAATTTATGCTTACTTATA+GGG + chr6.4:42557922-42557941 None:intergenic 20.0%
!! TAATTTATGCTTACTTATAG+GGG + chr6.4:42557921-42557940 None:intergenic 20.0%
!!! AAGCAAATTTTTTTAATCAG+TGG - chr6.4:42560206-42560225 MS.gene42902:intron 20.0%
!!! AAGTTTGTTTGTTTTAAAGA+AGG - chr6.4:42557749-42557768 MS.gene42902:CDS 20.0%
!!! AATATGTAGTAAGTTTTTTC+AGG - chr6.4:42559091-42559110 MS.gene42902:intron 20.0%
!!! ATATGTAGTAAGTTTTTTCA+GGG - chr6.4:42559092-42559111 MS.gene42902:intron 20.0%
!!! CATTTATGATTTTGAATATG+AGG - chr6.4:42558636-42558655 MS.gene42902:intron 20.0%
!!! GTTGTTTAAAACTTTTCTTA+AGG - chr6.4:42558420-42558439 MS.gene42902:intron 20.0%
!!! GTTTTGGATTATGTTTATTT+TGG - chr6.4:42558253-42558272 MS.gene42902:intron 20.0%
!!! TTTGGATTATGTTTATTTTG+GGG - chr6.4:42558255-42558274 MS.gene42902:intron 20.0%
! AATGACATGAATAACGAAAA+TGG - chr6.4:42559994-42560013 MS.gene42902:intron 25.0%
! CCAGTAAATATGAATTCTAA+TGG - chr6.4:42557108-42557127 MS.gene42902:intron 25.0%
! CCATTAGAATTCATATTTAC+TGG + chr6.4:42557111-42557130 None:intergenic 25.0%
! CTAGTTATAGTTGTTTATGT+TGG - chr6.4:42557263-42557282 MS.gene42902:CDS 25.0%
! GGTAATTTATGCTTACTTAT+AGG + chr6.4:42557923-42557942 None:intergenic 25.0%
! TAAACATTTAACATGAACGT+AGG + chr6.4:42557443-42557462 None:intergenic 25.0%
! TCTTGATATGTATGTGAAAA+TGG + chr6.4:42559832-42559851 None:intergenic 25.0%
! TGGGGAATAACTATTATATT+TGG + chr6.4:42559234-42559253 None:intergenic 25.0%
! TTAGAATTCATATTTACTGG+AGG + chr6.4:42557108-42557127 None:intergenic 25.0%
!! AAAAATGGGCTTTAGTATAT+GGG - chr6.4:42558746-42558765 MS.gene42902:intron 25.0%
!! ATCAAATCACAAACATTTTC+TGG - chr6.4:42558215-42558234 MS.gene42902:intron 25.0%
!! TCAAATCACAAACATTTTCT+GGG - chr6.4:42558216-42558235 MS.gene42902:intron 25.0%
!!! AGTTTTAGCAAGAAAATTGA+TGG - chr6.4:42559428-42559447 MS.gene42902:CDS 25.0%
!!! ATCAGTGGTATATTTTTTGT+TGG - chr6.4:42560221-42560240 MS.gene42902:CDS 25.0%
!!! GTTTTAAAGAAGGTTTTAAG+AGG - chr6.4:42557759-42557778 MS.gene42902:CDS 25.0%
!!! GTTTTAGCATTAGAAAAGAT+TGG - chr6.4:42557684-42557703 MS.gene42902:CDS 25.0%
AAAAGAATCTGATCTCTGAA+AGG + chr6.4:42558596-42558615 None:intergenic 30.0%
AAATCTATATGCATGGTCTT+CGG + chr6.4:42557639-42557658 None:intergenic 30.0%
AATAACGAAAATGGAGAACA+CGG - chr6.4:42560003-42560022 MS.gene42902:intron 30.0%
AATCCAATAAAAGGAGCAAA+TGG + chr6.4:42558328-42558347 None:intergenic 30.0%
ACACACTACAAGAAAACAAA+GGG - chr6.4:42557303-42557322 MS.gene42902:CDS 30.0%
ACTTTGATCTTCAGAGTTAA+AGG + chr6.4:42559139-42559158 None:intergenic 30.0%
AGAAATTGATAGATAGGAGT+TGG - chr6.4:42557192-42557211 MS.gene42902:intron 30.0%
AGCATAAATTACCATCACAA+AGG - chr6.4:42557930-42557949 MS.gene42902:CDS 30.0%
ATAAATTACCATCACAAAGG+AGG - chr6.4:42557933-42557952 MS.gene42902:CDS 30.0%
ATATCACACTTTCTCTATGA+TGG + chr6.4:42558354-42558373 None:intergenic 30.0%
ATCATCTGTTACTATCTCAT+TGG + chr6.4:42559535-42559554 None:intergenic 30.0%
ATGATATCCATATTCAATGC+AGG + chr6.4:42558952-42558971 None:intergenic 30.0%
ATGGGTATAAAAAAGAAGGA+TGG - chr6.4:42559576-42559595 MS.gene42902:CDS 30.0%
GAAGATATAATCCCATATGT+TGG - chr6.4:42557599-42557618 MS.gene42902:intron 30.0%
GATAAATGACATGCGTTATA+AGG - chr6.4:42558891-42558910 MS.gene42902:intron 30.0%
TAAATTACCATCACAAAGGA+GGG - chr6.4:42557934-42557953 MS.gene42902:CDS 30.0%
TGATCTGTGAAAATTGTCTT+CGG + chr6.4:42558463-42558482 None:intergenic 30.0%
TGATGGTTGAATCCAATAAA+AGG + chr6.4:42558337-42558356 None:intergenic 30.0%
TTATGTAGTACCTGCATAAT+TGG + chr6.4:42559711-42559730 None:intergenic 30.0%
TTGAGTGCTTAAAATACCAA+AGG + chr6.4:42560153-42560172 None:intergenic 30.0%
! AAAAGTACATATTGAAGAGG+TGG - chr6.4:42559253-42559272 MS.gene42902:CDS 30.0%
! ACCTCTTCAATATGTACTTT+TGG + chr6.4:42559254-42559273 None:intergenic 30.0%
! CATAGAGAAAGTGTGATATT+CGG - chr6.4:42558355-42558374 MS.gene42902:intron 30.0%
! CCTCTTCAATATGTACTTTT+GGG + chr6.4:42559253-42559272 None:intergenic 30.0%
! CTCTTCAATATGTACTTTTG+GGG + chr6.4:42559252-42559271 None:intergenic 30.0%
! GAAAAATGGGCTTTAGTATA+TGG - chr6.4:42558745-42558764 MS.gene42902:intron 30.0%
! GATCTTGCATCCATTTATTT+TGG + chr6.4:42558711-42558730 None:intergenic 30.0%
! TAGGAATTTAGCTTACATGA+TGG - chr6.4:42560246-42560265 MS.gene42902:CDS 30.0%
!! AATTTATATGCTGGCTTTGT+TGG - chr6.4:42557662-42557681 MS.gene42902:CDS 30.0%
!!! ACGTAGGTTTTTTTCTAGTT+TGG + chr6.4:42557427-42557446 None:intergenic 30.0%
!!! ATCCTTCTTTTTTATACCCA+TGG + chr6.4:42559577-42559596 None:intergenic 30.0%
!!! GGTATATTTTTTGTTGGTGT+AGG - chr6.4:42560227-42560246 MS.gene42902:CDS 30.0%
!!! TGTCGACTTTTTCAATTCAT+TGG - chr6.4:42559171-42559190 MS.gene42902:intron 30.0%
ACGACCTTCACCAAAATAAA+TGG - chr6.4:42558698-42558717 MS.gene42902:intron 35.0%
AGAAGATCCAAAGATAGTTG+TGG - chr6.4:42559329-42559348 MS.gene42902:CDS 35.0%
AGCAATGTCAATGAACCATT+AGG - chr6.4:42557069-42557088 MS.gene42902:CDS 35.0%
AGCCATGGGTATAAAAAAGA+AGG - chr6.4:42559572-42559591 MS.gene42902:CDS 35.0%
ATAACGAAAATGGAGAACAC+GGG - chr6.4:42560004-42560023 MS.gene42902:intron 35.0%
ATCAACAACAAATCTTGGTG+AGG - chr6.4:42559497-42559516 MS.gene42902:CDS 35.0%
ATCATATCCCCTTCAAATGT+AGG - chr6.4:42559969-42559988 MS.gene42902:intron 35.0%
CAATTAAGTGAGAGCTTCAA+TGG - chr6.4:42558802-42558821 MS.gene42902:intron 35.0%
CACACACTACAAGAAAACAA+AGG - chr6.4:42557302-42557321 MS.gene42902:CDS 35.0%
CATATCATCGTTTATGCTTG+TGG - chr6.4:42558533-42558552 MS.gene42902:intron 35.0%
CGAACTAGAGAAAAGATAAC+TGG + chr6.4:42559006-42559025 None:intergenic 35.0%
CGATGATATGTTTCACTTTC+AGG + chr6.4:42558523-42558542 None:intergenic 35.0%
GAAATCATTTAACTGCCAAG+AGG - chr6.4:42558086-42558105 MS.gene42902:CDS 35.0%
GAGTTTATGAGTCAATACGT+TGG - chr6.4:42558025-42558044 MS.gene42902:CDS 35.0%
GATGGTAAATCACGCATAAA+AGG - chr6.4:42559594-42559613 MS.gene42902:CDS 35.0%
GCAATGTCAATGAACCATTA+GGG - chr6.4:42557070-42557089 MS.gene42902:CDS 35.0%
GCTTAAAATACCAAAGGACT+TGG + chr6.4:42560147-42560166 None:intergenic 35.0%
GTCGTAGATTCTTATTAGTG+CGG + chr6.4:42558306-42558325 None:intergenic 35.0%
TAGCACATGTTGTCATTAGT+CGG - chr6.4:42557834-42557853 MS.gene42902:CDS 35.0%
TATAATCCCATATGTTGGCA+TGG - chr6.4:42557604-42557623 MS.gene42902:intron 35.0%
TCAATTTCAACCAAGTCCTT+TGG - chr6.4:42560134-42560153 MS.gene42902:intron 35.0%
TCCACATCAACAACAAATCT+TGG - chr6.4:42559492-42559511 MS.gene42902:CDS 35.0%
TGAAATTGAAACTCAGCAGA+TGG + chr6.4:42560123-42560142 None:intergenic 35.0%
TTATGAGTCAATACGTTGGA+GGG - chr6.4:42558029-42558048 MS.gene42902:CDS 35.0%
TTTATGAGTCAATACGTTGG+AGG - chr6.4:42558028-42558047 MS.gene42902:CDS 35.0%
! ACTTTTCTTAAGGCAATGTG+TGG - chr6.4:42558430-42558449 MS.gene42902:intron 35.0%
! CCCAAAAGTACATATTGAAG+AGG - chr6.4:42559250-42559269 MS.gene42902:CDS 35.0%
! CTTTTGTCCATGATAAGCAT+CGG + chr6.4:42560049-42560068 None:intergenic 35.0%
! GAGATCAGATTCTTTTGCTA+TGG - chr6.4:42558600-42558619 MS.gene42902:intron 35.0%
! GTCATTAGCCTACATTTGAA+GGG + chr6.4:42559980-42559999 None:intergenic 35.0%
! TCATTAGCCTACATTTGAAG+GGG + chr6.4:42559979-42559998 None:intergenic 35.0%
! TGTCATTAGCCTACATTTGA+AGG + chr6.4:42559981-42560000 None:intergenic 35.0%
! TTTTTCTCCACACAACTCTT+AGG + chr6.4:42559624-42559643 None:intergenic 35.0%
!! ACCAAGATTTGTTGTTGATG+TGG + chr6.4:42559496-42559515 None:intergenic 35.0%
!! GTTATCTTTTCTCTAGTTCG+TGG - chr6.4:42559006-42559025 MS.gene42902:intron 35.0%
!! TGATGAAAAAGTGTCTCGTA+AGG - chr6.4:42557793-42557812 MS.gene42902:CDS 35.0%
!!! GCATCCATTTATTTTGGTGA+AGG + chr6.4:42558705-42558724 None:intergenic 35.0%
!!! TAAGTTTTTTCAGGGACATG+AGG - chr6.4:42559100-42559119 MS.gene42902:intron 35.0%
AAACTGCAGCATCATTTGAG+TGG - chr6.4:42558398-42558417 MS.gene42902:intron 40.0%
AACCATCATGCCAATTATGC+AGG - chr6.4:42559698-42559717 MS.gene42902:CDS 40.0%
AACCCGTGATGTACTAATAC+TGG + chr6.4:42559866-42559885 None:intergenic 40.0%
ACCACTGTATCAAAAGCCAT+GGG - chr6.4:42559558-42559577 MS.gene42902:CDS 40.0%
AGCACATGTTGTCATTAGTC+GGG - chr6.4:42557835-42557854 MS.gene42902:CDS 40.0%
AGCCAGTATTAGTACATCAC+GGG - chr6.4:42559861-42559880 MS.gene42902:intron 40.0%
AGGATGAAGGAAATGAAGGA+AGG - chr6.4:42558106-42558125 MS.gene42902:intron 40.0%
AGTATTAGTACATCACGGGT+TGG - chr6.4:42559865-42559884 MS.gene42902:intron 40.0%
CAAACTCCATGCCAACATAT+GGG + chr6.4:42557613-42557632 None:intergenic 40.0%
CAAGAGGATGAAGGAAATGA+AGG - chr6.4:42558102-42558121 MS.gene42902:intron 40.0%
CAGCCAGTATTAGTACATCA+CGG - chr6.4:42559860-42559879 MS.gene42902:intron 40.0%
CATGGCAAAAGCAATTTCAG+AGG - chr6.4:42558492-42558511 MS.gene42902:intron 40.0%
CATTCTACCGATGCTTATCA+TGG - chr6.4:42560039-42560058 MS.gene42902:intron 40.0%
CGATTTGCCACAACTATCTT+TGG + chr6.4:42559339-42559358 None:intergenic 40.0%
CGGGAATCAAGTGGAAAATA+TGG - chr6.4:42557854-42557873 MS.gene42902:CDS 40.0%
CTTCATTTCCTTCATCCTCT+TGG + chr6.4:42558104-42558123 None:intergenic 40.0%
GAAGATGCCTGCATTGAATA+TGG - chr6.4:42558942-42558961 MS.gene42902:intron 40.0%
GTAAATCACGCATAAAAGGC+AGG - chr6.4:42559598-42559617 MS.gene42902:CDS 40.0%
GTAGAAATGGCAAATCGATC+TGG - chr6.4:42557980-42557999 MS.gene42902:CDS 40.0%
TAACGAAAATGGAGAACACG+GGG - chr6.4:42560005-42560024 MS.gene42902:intron 40.0%
TACCACTGTATCAAAAGCCA+TGG - chr6.4:42559557-42559576 MS.gene42902:CDS 40.0%
TACCTGCATAATTGGCATGA+TGG + chr6.4:42559703-42559722 None:intergenic 40.0%
TATTCAATGCAGGCATCTTC+TGG + chr6.4:42558942-42558961 None:intergenic 40.0%
TCAAACTCCATGCCAACATA+TGG + chr6.4:42557614-42557633 None:intergenic 40.0%
TCTCGTAAGGATATCAGAAC+TGG - chr6.4:42557806-42557825 MS.gene42902:CDS 40.0%
TGCAGTAGGAATATCAAGCA+AGG - chr6.4:42559380-42559399 MS.gene42902:CDS 40.0%
TTTAACTGCCAAGAGGATGA+AGG - chr6.4:42558093-42558112 MS.gene42902:intron 40.0%
TTTCTGGGCAGATGCTAAAA+TGG - chr6.4:42558231-42558250 MS.gene42902:intron 40.0%
! ACATGATGGCTTGTCTTCAT+GGG - chr6.4:42560260-42560279 MS.gene42902:CDS 40.0%
! ATAGATAGGAGTTGGTCAGT+AGG - chr6.4:42557200-42557219 MS.gene42902:CDS 40.0%
! CGACCATTTGCTCCTTTTAT+TGG - chr6.4:42558322-42558341 MS.gene42902:intron 40.0%
! GGCAGATGCTAAAATGGTTT+TGG - chr6.4:42558237-42558256 MS.gene42902:intron 40.0%
! TACATGATGGCTTGTCTTCA+TGG - chr6.4:42560259-42560278 MS.gene42902:CDS 40.0%
!!! CTCTGAAATTGCTTTTGCCA+TGG + chr6.4:42558494-42558513 None:intergenic 40.0%
AGGATGACTTTCTTGCAGCT+TGG - chr6.4:42558656-42558675 MS.gene42902:intron 45.0%
CTCAACAAATGTAGAGCCTC+AGG - chr6.4:42560095-42560114 MS.gene42902:intron 45.0%
GGATGTGTGCTAGACAGTAA+GGG - chr6.4:42559294-42559313 MS.gene42902:CDS 45.0%
GGGATGCAAGCTCATGATTA+TGG + chr6.4:42557901-42557920 None:intergenic 45.0%
GTCAATGAACCATTAGGGAG+TGG - chr6.4:42557075-42557094 MS.gene42902:CDS 45.0%
GTCATTAGTCGGGAATCAAG+TGG - chr6.4:42557845-42557864 MS.gene42902:CDS 45.0%
GTTGGTCAGTAGGTTAGAGA+TGG - chr6.4:42557210-42557229 MS.gene42902:CDS 45.0%
TCAAGCAGCTGAGGTAGAAA+TGG - chr6.4:42557967-42557986 MS.gene42902:CDS 45.0%
TGGATGTGTGCTAGACAGTA+AGG - chr6.4:42559293-42559312 MS.gene42902:CDS 45.0%
! ACCCATGGCTTTTGATACAG+TGG + chr6.4:42559562-42559581 None:intergenic 45.0%
! CATGATGGCTTGTCTTCATG+GGG - chr6.4:42560261-42560280 MS.gene42902:CDS 45.0%
! CTCGAAGAGCATGACAACAA+AGG + chr6.4:42559200-42559219 None:intergenic 45.0%
! GGGTGAAACACATTTTCAGC+TGG - chr6.4:42558766-42558785 MS.gene42902:intron 45.0%
!! AGAGGTGGACTAAACAAGCT+CGG - chr6.4:42559268-42559287 MS.gene42902:CDS 45.0%
!! AAGAAAATATATAAATTTAA+TGG + chr6.4:42557533-42557552 None:intergenic 5.0%
CACAGATCAAGATGCTGCCA+TGG - chr6.4:42558474-42558493 MS.gene42902:intron 50.0%
GAGTCAATACGTTGGAGGGA+GGG - chr6.4:42558033-42558052 MS.gene42902:CDS 50.0%
GATCTATGTCGCACTGCAGT+AGG - chr6.4:42559366-42559385 MS.gene42902:CDS 50.0%
GCAGAAACCCTCCTTTGTGA+TGG + chr6.4:42557944-42557963 None:intergenic 50.0%
GGAGAACACGGGGAAGAATT+TGG - chr6.4:42560015-42560034 MS.gene42902:intron 50.0%
GGTTTATCGCCACTCCCTAA+TGG + chr6.4:42557087-42557106 None:intergenic 50.0%
GTCTTCATGGGGTGGAAACA+AGG - chr6.4:42560272-42560291 MS.gene42902:CDS 50.0%
TCAAGCAAGGCTGCTGAAGA+TGG - chr6.4:42559393-42559412 MS.gene42902:CDS 50.0%
TGAGTCAATACGTTGGAGGG+AGG - chr6.4:42558032-42558051 MS.gene42902:CDS 50.0%
TGGACTAAACAAGCTCGGAG+TGG - chr6.4:42559273-42559292 MS.gene42902:CDS 50.0%
AACTCAGCAGATGGTGCCTG+AGG + chr6.4:42560114-42560133 None:intergenic 55.0%
AGGCAGGCCTAAGAGTTGTG+TGG - chr6.4:42559614-42559633 MS.gene42902:CDS 55.0%
GTTGGAGGGAGGGAGAATGT+TGG - chr6.4:42558043-42558062 MS.gene42902:CDS 55.0%
TTCTGCTGCTCAAGCAGCTG+AGG - chr6.4:42557958-42557977 MS.gene42902:CDS 55.0%
! GATGGCTTGTCTTCATGGGG+TGG - chr6.4:42560264-42560283 MS.gene42902:CDS 55.0%


Chromosome Type Strat End Strand Name
chr6.4 gene 42557045 42560305 42557045 ID=MS.gene42902
chr6.4 mRNA 42557045 42560305 42557045 ID=MS.gene42902.t1;Parent=MS.gene42902
chr6.4 exon 42560221 42560305 42560221 ID=MS.gene42902.t1.exon1;Parent=MS.gene42902.t1
chr6.4 CDS 42560221 42560305 42560221 ID=cds.MS.gene42902.t1;Parent=MS.gene42902.t1
chr6.4 exon 42559223 42559783 42559223 ID=MS.gene42902.t1.exon2;Parent=MS.gene42902.t1
chr6.4 CDS 42559223 42559783 42559223 ID=cds.MS.gene42902.t1;Parent=MS.gene42902.t1
chr6.4 exon 42557631 42558106 42557631 ID=MS.gene42902.t1.exon3;Parent=MS.gene42902.t1
chr6.4 CDS 42557631 42558106 42557631 ID=cds.MS.gene42902.t1;Parent=MS.gene42902.t1
chr6.4 exon 42557195 42557359 42557195 ID=MS.gene42902.t1.exon4;Parent=MS.gene42902.t1
chr6.4 CDS 42557195 42557359 42557195 ID=cds.MS.gene42902.t1;Parent=MS.gene42902.t1
chr6.4 exon 42557045 42557101 42557045 ID=MS.gene42902.t1.exon5;Parent=MS.gene42902.t1
chr6.4 CDS 42557045 42557101 42557045 ID=cds.MS.gene42902.t1;Parent=MS.gene42902.t1
Gene Sequence

>MS.gene42902

ATGGAAAATTCAAATTTCATTGCAAGCAATGTCAATGAACCATTAGGGAGTGGCGATAAACCTCCAGTAAATATGAATTCTAATGGTATGTATTTTTCTATTTAAATTATATTCAATGTTTTTAAATATTTTTAGGAGAAGATACTTAGAAATTGATAGATAGGAGTTGGTCAGTAGGTTAGAGATGGTACAAATTGATAACATAATAAAGCATTGTTCTAGTTATAGTTGTTTATGTTGGTACTGTCATAGAATAACACACACTACAAGAAAACAAAGGGTTCATAGAGACATAACTACACCTTTAATAATAACACTATAATTGTAATTTATAACAACGTTTAAATTCATAATAATAGTAACATTGAAGCTTTATCTACCAAACTAGAAAAAAACCTACGTTCATGTTAAATGTTTACGTATTGCTTTTTCTTATAATATGTTTGCCGAATGCTTGTTTATAATAGATTGAGCCGATGATTTAACCATTAAATTTATATATTTTCTTATTCACAATTAAAGGGAATGATAATCTTGAGCATGAACTAACTGAAGAAGATATAATCCCATATGTTGGCATGGAGTTTGATACCGAAGACCATGCATATAGATTTTATAATTTATATGCTGGCTTTGTTGGTTTTAGCATTAGAAAAGATTGGAGAAACAAAAGCAAATTAGATAATGAAACTGTGATGTCTCGAAAGTTTGTTTGTTTTAAAGAAGGTTTTAAGAGGATCAAAGAATATGATGAAAAAGTGTCTCGTAAGGATATCAGAACTGGATGTTTAGCACATGTTGTCATTAGTCGGGAATCAAGTGGAAAATATGGTGTTACATCTTTCAGAAAAGACCATAATCATGAGCTTGCATCCCCTATAAGTAAGCATAAATTACCATCACAAAGGAGGGTTTCTGCTGCTCAAGCAGCTGAGGTAGAAATGGCAAATCGATCTGGTATACGTCAAAAATTGATTTTTGAGTTTATGAGTCAATACGTTGGAGGGAGGGAGAATGTTGGTTGCACTTCTAAAGATATTAGAAATCATTTAACTGCCAAGAGGATGAAGGAAATGAAGGAAGGTGAAGCATATACTTTGCTTCATTATTTTAAAGCAAAGCAAACAGAGAATCAATCATTCTTTTATGATATTCAACTTGATGTTGATAATCAAATCACAAACATTTTCTGGGCAGATGCTAAAATGGTTTTGGATTATGTTTATTTTGGGGATGTAGTATGTTTTGATACAACATACCGCACTAATAAGAATCTACGACCATTTGCTCCTTTTATTGGATTCAACCATCATAGAGAAAGTGTGATATTCGGTGCAGCATTGTTATACGATGAAACTGCAGCATCATTTGAGTGGTTGTTTAAAACTTTTCTTAAGGCAATGTGTGGAAAAAAGCCGAAGACAATTTTCACAGATCAAGATGCTGCCATGGCAAAAGCAATTTCAGAGGTTTTTCCTGAAAGTGAAACATATCATCGTTTATGCTTGTGGCATTTATTTCAGAATGCACTTAAGAATCTTAATCATGCCTTTCAGAGATCAGATTCTTTTGCTATGGATTTGAGAAGTTGCATTTATGATTTTGAATATGAGGATGACTTTCTTGCAGCTTGGAATTCGTTACTTGAAAAGCACGACCTTCACCAAAATAAATGGATGCAAGATCTCTATAAGAAAAAAGAAAAATGGGCTTTAGTATATGGGTGAAACACATTTTCAGCTGGTGCTACAACAACACAATTAAGTGAGAGCTTCAATGGTCGTTTACGACTTTACATGAAGTCCACTTATAATGTGTTAGAATTTTTCACACACTTAGAAAGATTGATAAATGACATGCGTTATAAGGAGATAGAGTCTAAATATGAAATGAGCCAGAAGATGCCTGCATTGAATATGGATATCATGTTACTCAAAACTGCTAGAGATATCTACACACCAGTTATCTTTTCTCTAGTTCGTGGAGAATATGAAAAGTCTTGTAATCTTCTTTTGAACAACTGCTCTAAAAACTTGCAATTATATGAATATGTAGTAAGTTTTTTCAGGGACATGAGGCAGCATAAAGTTACCTTTAACTCTGAAGATCAAAGTGTTGAGTGCAGTTGTCGACTTTTTCAATTCATTGGAATCCTTTGTTGTCATGCTCTTCGAGTACTTAATCATCCAAATATAATAGTTATTCCCCAAAAGTACATATTGAAGAGGTGGACTAAACAAGCTCGGAGTGGATGTGTGCTAGACAGTAAGGGACAAATTATCAAAGAAGATCCAAAGATAGTTGTGGCAAATCGCTTCAAAGATCTATGTCGCACTGCAGTAGGAATATCAAGCAAGGCTGCTGAAGATGGAGATGCTTCAGCAGTTTTAGCAAGAAAATTGATGGAAGCTAGCATTGAAGTTGATAAAATCTTAAGCAAAAGATCTTCCACATCAACAACAAATCTTGGTGAGGTAAATAGTCAAACCAATGAGATAGTAACAGATGATATTACCACTGTATCAAAAGCCATGGGTATAAAAAAGAAGGATGGTAAATCACGCATAAAAGGCAGGCCTAAGAGTTGTGTGGAGAAAAAATACAAAAGAAGCAAAGGCACTCACAAGCGTAGTCATGTGACACAAAATTATTCAACCATCATGCCAATTATGCAGGTACTACATAATAGTAACTCATATTTCTTTGTTTGAGTATAAATTATTTTGTTCAATACTTTATCTATTAAATTAAATATGTTTTTGATTGTTGTATGTGCAGAATTTTCCATTTTCACATACATATCAAGATCTAGAAGCAGCCAGTATTAGTACATCACGGGTTGGATTATTCATCACACAATTTATTTTTCTTTTTTGTACTTGCAGATTATTTTTTTTGTTCAGCTTTATATGTGTGTCATACTCATCATATCCCCTTCAAATGTAGGCTAATGACATGAATAACGAAAATGGAGAACACGGGGAAGAATTTGGTCATTCTACCGATGCTTATCATGGACAAAAGCATCTGAGTCAAAGTCGCATGCTTAACTCAACAAATGTAGAGCCTCAGGCACCATCTGCTGAGTTTCAATTTCAACCAAGTCCTTTGGTATTTTAAGCACTCAATGCTTTATCACTAATGTTGTCAACACTCATTACAAGCAAATTTTTTTAATCAGTGGTATATTTTTTGTTGGTGTAGGAATTTAGCTTACATGATGGCTTGTCTTCATGGGGTGGAAACAAGGAGACCAATTGA

Protein sequence

>MS.gene42902.t1

MENSNFIASNVNEPLGSGDKPPVNMNSNGNDNLEHELTEEDIIPYVGMEFDTEDHAYRFYNLYAGFVGFSIRKDWRNKSKLDNETVMSRKFVCFKEGFKRIKEYDEKVSRKDIRTGCLAHVVISRESSGKYGVTSFRKDHNHELASPISKHKLPSQRRVSAAQAAEVEMANRSGIRQKLIFEFMSQYVGGRENVGCTSKDIRNHLTAKRMKEMKEVIPQKYILKRWTKQARSGCVLDSKGQIIKEDPKIVVANRFKDLCRTAVGISSKAAEDGDASAVLARKLMEASIEVDKILSKRSSTSTTNLGEVNSQTNEIVTDDITTVSKAMGIKKKDGKSRIKGRPKSCVEKKYKRSKGTHKRSHVTQNYSTIMPIMQANDMNNENGEHGEEFGHSTDAYHGQKHLSQSRMLNSTNVEPQAPSAEFQFQPSPLEFSLHDGLSSWGGNKETN