Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42963.t1 | XP_024630853.1 | 71.5 | 719 | 96 | 8 | 1 | 611 | 55 | 772 | 4.30E-244 | 854 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42963.t1 | Q9SLH0 | 53.0 | 296 | 129 | 3 | 29 | 315 | 43 | 337 | 3.5e-85 | 317.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42963.t1 | G7KNC0 | 77.0 | 660 | 102 | 5 | 1 | 611 | 1 | 659 | 1.7e-237 | 831.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene42963.t1 | TF | EIL |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42963.t1 | MTR_6g060600 | 83.485 | 660 | 59 | 5 | 1 | 611 | 1 | 659 | 0.0 | 1067 |
| MS.gene42963.t1 | MTR_6g460640 | 80.694 | 663 | 74 | 6 | 1 | 610 | 1 | 662 | 0.0 | 1049 |
| MS.gene42963.t1 | MTR_3g010790 | 48.807 | 545 | 211 | 15 | 83 | 609 | 1 | 495 | 1.36e-153 | 451 |
| MS.gene42963.t1 | MTR_3g078770 | 39.610 | 462 | 228 | 10 | 34 | 453 | 51 | 503 | 3.04e-110 | 344 |
| MS.gene42963.t1 | MTR_5g087790 | 40.299 | 469 | 240 | 8 | 29 | 460 | 43 | 508 | 2.99e-109 | 341 |
| MS.gene42963.t1 | MTR_2g098470 | 51.852 | 270 | 119 | 3 | 21 | 282 | 24 | 290 | 1.94e-93 | 300 |
| MS.gene42963.t1 | MTR_3g087530 | 49.035 | 259 | 108 | 5 | 35 | 279 | 32 | 280 | 4.71e-83 | 267 |
| MS.gene42963.t1 | MTR_8g091370 | 47.510 | 261 | 130 | 4 | 25 | 279 | 12 | 271 | 1.45e-76 | 251 |
| MS.gene42963.t1 | MTR_1g024420 | 75.238 | 105 | 18 | 1 | 29 | 125 | 4 | 108 | 1.04e-48 | 166 |
| MS.gene42963.t1 | MTR_6g060630 | 61.438 | 153 | 40 | 3 | 448 | 581 | 55 | 207 | 3.93e-48 | 167 |
| MS.gene42963.t1 | MTR_7g095580 | 60.000 | 45 | 18 | 0 | 92 | 136 | 21 | 65 | 4.46e-14 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42963.t1 | AT2G27050 | 38.911 | 514 | 249 | 12 | 29 | 501 | 43 | 532 | 2.15e-108 | 338 |
| MS.gene42963.t1 | AT3G20770 | 39.351 | 493 | 241 | 14 | 29 | 479 | 43 | 519 | 8.18e-107 | 335 |
| MS.gene42963.t1 | AT5G10120 | 50.000 | 260 | 122 | 3 | 28 | 279 | 16 | 275 | 2.17e-89 | 285 |
| MS.gene42963.t1 | AT1G73730 | 49.451 | 273 | 125 | 3 | 18 | 282 | 21 | 288 | 6.35e-89 | 287 |
| MS.gene42963.t1 | AT1G73730 | 49.451 | 273 | 125 | 3 | 18 | 282 | 9 | 276 | 6.60e-89 | 286 |
| MS.gene42963.t1 | AT5G65100 | 45.788 | 273 | 122 | 3 | 30 | 278 | 33 | 303 | 1.06e-79 | 262 |
| MS.gene42963.t1 | AT5G21120 | 38.108 | 370 | 196 | 11 | 40 | 388 | 53 | 410 | 2.02e-73 | 244 |
| MS.gene42963.t1 | AT5G21120 | 38.108 | 370 | 196 | 11 | 40 | 388 | 53 | 410 | 2.02e-73 | 244 |
| MS.gene42963.t1 | AT5G21120 | 38.108 | 370 | 196 | 11 | 40 | 388 | 60 | 417 | 2.50e-73 | 244 |
Find 113 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTTGATGCTGCATATTT+TGG | 0.183879 | 6.3:+62557534 | None:intergenic |
| CTTGATGGCCATGAAAATTT+TGG | 0.189175 | 6.3:+62557510 | None:intergenic |
| TGGCATCATCAAGTTATAAT+TGG | 0.197242 | 6.3:-62557361 | MS.gene42963:CDS |
| ATCATCGTCATCGTCGTATA+AGG | 0.216455 | 6.3:-62558890 | MS.gene42963:CDS |
| GTACTAAGGAAACATCTATT+TGG | 0.250087 | 6.3:-62559101 | MS.gene42963:CDS |
| CGGAGATTTCCATTGGAAAA+AGG | 0.266811 | 6.3:-62559339 | MS.gene42963:CDS |
| AATGCTGCTAAGAAAGTTAA+AGG | 0.267746 | 6.3:-62560340 | MS.gene42963:CDS |
| GTTGTTGCTGCTTCCTATTT+CGG | 0.289926 | 6.3:+62558720 | None:intergenic |
| AACAATGCAAAACAAGAAAA+AGG | 0.304941 | 6.3:-62560417 | MS.gene42963:CDS |
| AGATTATGAGGCTTTCTATA+AGG | 0.304992 | 6.3:+62559237 | None:intergenic |
| GCTAAATACGAAACAGAAAA+TGG | 0.309146 | 6.3:-62559489 | MS.gene42963:CDS |
| TTCAGCGAGTGAAGTGTAAT+TGG | 0.310216 | 6.3:+62559429 | None:intergenic |
| GAGTAATATGATTCCAAATC+AGG | 0.316724 | 6.3:-62557693 | MS.gene42963:CDS |
| CTTTGATTAACACCCTGATT+TGG | 0.319131 | 6.3:+62557680 | None:intergenic |
| GAACTACCCGACACCATATT+AGG | 0.324492 | 6.3:-62559405 | MS.gene42963:CDS |
| TTGATGGACATATATAATTC+AGG | 0.341441 | 6.3:-62557830 | MS.gene42963:CDS |
| CAACTTCATCCATTTCGAAT+TGG | 0.341610 | 6.3:+62558698 | None:intergenic |
| AGAAGTGGTTTCTGATTTGA+TGG | 0.347106 | 6.3:-62557846 | MS.gene42963:CDS |
| ATAGTTAAATTTGACATAAA+CGG | 0.356609 | 6.3:-62559525 | MS.gene42963:CDS |
| GATGCTCGTGGCTTCATCTA+TGG | 0.357885 | 6.3:-62559615 | MS.gene42963:CDS |
| TTCCTAATCTTATGAACATT+AGG | 0.362413 | 6.3:+62559162 | None:intergenic |
| GATTATGAGGCTTTCTATAA+GGG | 0.363151 | 6.3:+62559238 | None:intergenic |
| CAAACCTTCTTCAGATTATG+AGG | 0.369249 | 6.3:+62559225 | None:intergenic |
| GTGCACAAGAACACATATTA+AGG | 0.370390 | 6.3:-62560254 | MS.gene42963:intron |
| CTCCATGATTCTTTCCCTGT+TGG | 0.376931 | 6.3:+62559297 | None:intergenic |
| CCTCCACCATGGTGGCCAAC+AGG | 0.377036 | 6.3:-62559312 | MS.gene42963:CDS |
| TAGTTAAATTTGACATAAAC+GGG | 0.385553 | 6.3:-62559524 | MS.gene42963:CDS |
| CTCATAATCTGAAGAAGGTT+TGG | 0.391254 | 6.3:-62559224 | MS.gene42963:CDS |
| CACTTGCATGATAGATTTGA+TGG | 0.399089 | 6.3:+62557738 | None:intergenic |
| AACATCAGATTGAGAATTGA+AGG | 0.406687 | 6.3:+62557403 | None:intergenic |
| CTATCATGCAAGTGTTCAAC+AGG | 0.406920 | 6.3:-62557729 | MS.gene42963:CDS |
| AGTTATGATTCTCGTGTTGA+AGG | 0.407240 | 6.3:-62559018 | MS.gene42963:CDS |
| CCAAAATATGCAGCATCAAA+TGG | 0.411899 | 6.3:-62557534 | MS.gene42963:CDS |
| AAGAGACAATATTATATCAT+TGG | 0.420119 | 6.3:-62560304 | MS.gene42963:CDS |
| TCATCGTCATCGTCGTATAA+GGG | 0.428901 | 6.3:-62558889 | MS.gene42963:CDS |
| TGAGAGAAGTGAACCTAATA+TGG | 0.432462 | 6.3:+62559392 | None:intergenic |
| CACTCATTGGTTTGCCCTCG+TGG | 0.436143 | 6.3:+62559583 | None:intergenic |
| GTTGCAACCATGTTCATAAC+TGG | 0.438691 | 6.3:+62557569 | None:intergenic |
| GTTGAGGCATTTGCTTGCAT+TGG | 0.441840 | 6.3:+62557431 | None:intergenic |
| TTGAAGCTTCCCCTCTTGAA+TGG | 0.445723 | 6.3:+62560439 | None:intergenic |
| CAGCAACAACCAATTCGAAA+TGG | 0.453871 | 6.3:-62558707 | MS.gene42963:CDS |
| ACATTAGCTACTTCAGCATT+AGG | 0.464999 | 6.3:+62557455 | None:intergenic |
| TACCGCAGCTTGCACACGTT+GGG | 0.467304 | 6.3:+62558639 | None:intergenic |
| GATAAGATCATTCATCATAC+AGG | 0.467684 | 6.3:-62558607 | MS.gene42963:intron |
| TTGTCTGATGAACCACTCAT+TGG | 0.468990 | 6.3:+62559570 | None:intergenic |
| CCTGTTGGCCACCATGGTGG+AGG | 0.469951 | 6.3:+62559312 | None:intergenic |
| TGAATGATCTTATCTGCAAC+AGG | 0.473671 | 6.3:+62558616 | None:intergenic |
| TTTCTTGGTGGAATTCATGT+TGG | 0.474978 | 6.3:+62558776 | None:intergenic |
| CTCCTAATGTTCATAAGATT+AGG | 0.475251 | 6.3:-62559164 | MS.gene42963:CDS |
| CAGGTACATGTTAATGATGA+TGG | 0.486249 | 6.3:-62559646 | MS.gene42963:CDS |
| CATCAGACAATTTACGAGGC+TGG | 0.493913 | 6.3:-62559557 | MS.gene42963:CDS |
| ACAAATAATGACAAGTTGAA+TGG | 0.495226 | 6.3:-62559456 | MS.gene42963:CDS |
| GATAGCACCATTATGAACTC+TGG | 0.501076 | 6.3:+62560467 | None:intergenic |
| ACCATGTTCATAACTGGCAT+TGG | 0.505692 | 6.3:+62557575 | None:intergenic |
| TGATGCTTACAACAACTTTG+TGG | 0.507166 | 6.3:-62557381 | MS.gene42963:CDS |
| ACAAGATAAACTCAGTACTA+AGG | 0.510016 | 6.3:-62559115 | MS.gene42963:CDS |
| GGCCAACAGGGAAAGAATCA+TGG | 0.513222 | 6.3:-62559299 | MS.gene42963:CDS |
| AATGGAAATCTCCGTTGTGG+TGG | 0.514931 | 6.3:+62559348 | None:intergenic |
| AGTGAACCTAATATGGTGTC+GGG | 0.518068 | 6.3:+62559399 | None:intergenic |
| TCTTTCCCTGTTGGCCACCA+TGG | 0.518755 | 6.3:+62559306 | None:intergenic |
| ACTCATTGGTTTGCCCTCGT+GGG | 0.520053 | 6.3:+62559584 | None:intergenic |
| ACCACAACGGAGATTTCCAT+TGG | 0.522988 | 6.3:-62559346 | MS.gene42963:CDS |
| ATGTATCCCAGAGTTCATAA+TGG | 0.523895 | 6.3:-62560474 | MS.gene42963:CDS |
| AACAAGAGAAAACGTAAACT+TGG | 0.524798 | 6.3:-62558862 | MS.gene42963:CDS |
| GCTTGCACACGTTGGGCAAG+AGG | 0.525430 | 6.3:+62558646 | None:intergenic |
| TTATGATTAACACCGGGAGT+TGG | 0.525458 | 6.3:+62557767 | None:intergenic |
| TAATCTGAAGAAGGTTTGGA+AGG | 0.542382 | 6.3:-62559220 | MS.gene42963:CDS |
| TTCCCTGTTGGCCACCATGG+TGG | 0.549900 | 6.3:+62559309 | None:intergenic |
| AGTAATATGATTCCAAATCA+GGG | 0.554504 | 6.3:-62557692 | MS.gene42963:CDS |
| AAGTGAACCTAATATGGTGT+CGG | 0.558954 | 6.3:+62559398 | None:intergenic |
| AAAGCCTCATAATCTGAAGA+AGG | 0.560995 | 6.3:-62559229 | MS.gene42963:CDS |
| GGAACATAGTCAGACAATCA+AGG | 0.561355 | 6.3:-62559143 | MS.gene42963:CDS |
| TCGTATTTAGCAATTGCCGC+TGG | 0.562404 | 6.3:+62559501 | None:intergenic |
| CTCATTGGTTTGCCCTCGTG+GGG | 0.563133 | 6.3:+62559585 | None:intergenic |
| ACAAAGGAAAAGAAAGACAT+TGG | 0.563170 | 6.3:-62560280 | MS.gene42963:CDS |
| CTCCACCATGGTGGCCAACA+GGG | 0.563459 | 6.3:-62559311 | MS.gene42963:CDS |
| CATCATTGAAGTATTCATCA+TGG | 0.563846 | 6.3:+62557604 | None:intergenic |
| TCCAATGGAAATCTCCGTTG+TGG | 0.567968 | 6.3:+62559345 | None:intergenic |
| TGCCCAACGTGTGCAAGCTG+CGG | 0.574797 | 6.3:-62558641 | MS.gene42963:CDS |
| AACAATGCAGGTAATTACTC+AGG | 0.576216 | 6.3:-62557875 | MS.gene42963:intron |
| AGAATTGAAGGTTGTTGTTG+AGG | 0.577679 | 6.3:+62557415 | None:intergenic |
| ATGAGATTTAGTGAAGATCC+CGG | 0.583376 | 6.3:-62559267 | MS.gene42963:CDS |
| ATAGCACCATTATGAACTCT+GGG | 0.587051 | 6.3:+62560468 | None:intergenic |
| GCAGGTAATTACTCAGGAGG+AGG | 0.589511 | 6.3:-62557869 | MS.gene42963:intron |
| ATTATGAGGCTTTCTATAAG+GGG | 0.590034 | 6.3:+62559239 | None:intergenic |
| ATATTATATCATTGGAACAA+AGG | 0.591577 | 6.3:-62560296 | MS.gene42963:CDS |
| AAGTAATTATGTGCTTGTTG+AGG | 0.609719 | 6.3:-62558995 | MS.gene42963:CDS |
| GTTAACTATTGAGGAACTAG+AGG | 0.610445 | 6.3:-62560382 | MS.gene42963:CDS |
| GTGCATGTTATGATTAACAC+CGG | 0.611942 | 6.3:+62557760 | None:intergenic |
| ATGGAAATCTCCGTTGTGGT+GGG | 0.614439 | 6.3:+62559349 | None:intergenic |
| AGTACGATGATTCCAACTCC+CGG | 0.614991 | 6.3:-62557779 | MS.gene42963:CDS |
| TTACTCAGGAGGAGGAGAAG+TGG | 0.624741 | 6.3:-62557861 | MS.gene42963:CDS |
| CAGACAATTTACGAGGCTGG+TGG | 0.628174 | 6.3:-62559554 | MS.gene42963:CDS |
| ATTTGACATAAACGGGCCAG+CGG | 0.631675 | 6.3:-62559517 | MS.gene42963:CDS |
| TGGAATTCATGTTGGTCAAG+AGG | 0.631768 | 6.3:+62558784 | None:intergenic |
| CGTTGTGGTGGGTCACAATG+CGG | 0.634330 | 6.3:+62559360 | None:intergenic |
| CGCATTGTGACCCACCACAA+CGG | 0.638363 | 6.3:-62559359 | MS.gene42963:CDS |
| GTACCGCAGCTTGCACACGT+TGG | 0.638406 | 6.3:+62558638 | None:intergenic |
| GCTATCGCTAACCATTCAAG+AGG | 0.639976 | 6.3:-62560450 | MS.gene42963:CDS |
| TTATGAGGCTTTCTATAAGG+GGG | 0.640626 | 6.3:+62559240 | None:intergenic |
| TCCAATGCCAGTTATGAACA+TGG | 0.642108 | 6.3:-62557576 | MS.gene42963:CDS |
| TGGAATCATCGTACTCATGA+CGG | 0.645856 | 6.3:+62557787 | None:intergenic |
| CTATCGCTAACCATTCAAGA+GGG | 0.648395 | 6.3:-62560449 | MS.gene42963:CDS |
| GACGATGACGATGATGATGA+TGG | 0.648657 | 6.3:+62558898 | None:intergenic |
| ATGGAAGTTTGTGATGCTCG+TGG | 0.649462 | 6.3:-62559627 | MS.gene42963:CDS |
| AATGCAGGTAATTACTCAGG+AGG | 0.654047 | 6.3:-62557872 | MS.gene42963:intron |
| CACGAGGGCAAACCAATGAG+TGG | 0.675933 | 6.3:-62559582 | MS.gene42963:CDS |
| TGCATGTTATGATTAACACC+GGG | 0.698948 | 6.3:+62557761 | None:intergenic |
| CTATGGAGTAATACCCCACG+AGG | 0.701029 | 6.3:-62559598 | MS.gene42963:CDS |
| AAGGCATTCCTCCACCATGG+TGG | 0.706316 | 6.3:-62559320 | MS.gene42963:CDS |
| TATCGCTAACCATTCAAGAG+GGG | 0.726590 | 6.3:-62560448 | MS.gene42963:CDS |
| GGTTCATCAGACAATTTACG+AGG | 0.727611 | 6.3:-62559561 | MS.gene42963:CDS |
| TATGGAGTAATACCCCACGA+GGG | 0.783328 | 6.3:-62559597 | MS.gene42963:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTTCAACCTAATTATT+TGG | + | chr6.3:62557976-62557995 | None:intergenic | 15.0% |
| !! | ATAGTTAAATTTGACATAAA+CGG | - | chr6.3:62558301-62558320 | MS.gene42963:intron | 15.0% |
| !! | CTATTTCATTATATATTACT+TGG | - | chr6.3:62559618-62559637 | MS.gene42963:CDS | 15.0% |
| !! | TATAATTCACAATTTGATTA+TGG | - | chr6.3:62559504-62559523 | MS.gene42963:CDS | 15.0% |
| !! | TCCTAGTTAAAATAAAAATA+AGG | + | chr6.3:62557604-62557623 | None:intergenic | 15.0% |
| !!! | AAAGGTATTTTTATTTAACT+AGG | - | chr6.3:62559328-62559347 | MS.gene42963:CDS | 15.0% |
| !!! | ACCTTATTTTTATTTTAACT+AGG | - | chr6.3:62557600-62557619 | MS.gene42963:CDS | 15.0% |
| !! | AAGAGACAATATTATATCAT+TGG | - | chr6.3:62557522-62557541 | MS.gene42963:CDS | 20.0% |
| !! | AATTCAAATCTCATTTAAAG+CGG | + | chr6.3:62557706-62557725 | None:intergenic | 20.0% |
| !! | ATATTATATCATTGGAACAA+AGG | - | chr6.3:62557530-62557549 | MS.gene42963:CDS | 20.0% |
| !! | ATGTAAGTATATTTAATACG+AGG | - | chr6.3:62558021-62558040 | MS.gene42963:intron | 20.0% |
| !! | TAGTTAAATTTGACATAAAC+GGG | - | chr6.3:62558302-62558321 | MS.gene42963:intron | 20.0% |
| !!! | AACTTGAATTTTAGTTTACT+TGG | - | chr6.3:62557827-62557846 | MS.gene42963:CDS | 20.0% |
| !!! | TAAATGATATGTTAGCTTAT+AGG | - | chr6.3:62559277-62559296 | MS.gene42963:CDS | 20.0% |
| !!! | TTATTCATTTTCGATTTACT+TGG | - | chr6.3:62557800-62557819 | MS.gene42963:CDS | 20.0% |
| ! | AACAATGCAAAACAAGAAAA+AGG | - | chr6.3:62557409-62557428 | MS.gene42963:CDS | 25.0% |
| ! | AGTAATATGATTCCAAATCA+GGG | - | chr6.3:62560134-62560153 | MS.gene42963:intron | 25.0% |
| ! | CACCAAAAGAAAAATAAATC+TGG | - | chr6.3:62559569-62559588 | MS.gene42963:CDS | 25.0% |
| ! | CATATCATTTACTAGATATG+TGG | + | chr6.3:62559268-62559287 | None:intergenic | 25.0% |
| ! | TAAAATCACAAGTTAACTCA+TGG | - | chr6.3:62557747-62557766 | MS.gene42963:CDS | 25.0% |
| ! | TCATAACTTGAGAAAAATTC+AGG | + | chr6.3:62558796-62558815 | None:intergenic | 25.0% |
| ! | TCATACGCTTTCATAAATTT+AGG | - | chr6.3:62557772-62557791 | MS.gene42963:CDS | 25.0% |
| ! | TGCTTGTTTCAAACTTAAAA+AGG | - | chr6.3:62559310-62559329 | MS.gene42963:CDS | 25.0% |
| ! | TTCCTAATCTTATGAACATT+AGG | + | chr6.3:62558667-62558686 | None:intergenic | 25.0% |
| ! | TTTAAACCAACAGAATTGTT+TGG | + | chr6.3:62559649-62559668 | None:intergenic | 25.0% |
| !! | AAGCTAACATAATTTTTACG+AGG | + | chr6.3:62559906-62559925 | None:intergenic | 25.0% |
| !! | ACAAATAATGACAAGTTGAA+TGG | - | chr6.3:62558370-62558389 | MS.gene42963:intron | 25.0% |
| !! | AGCTAACATAATTTTTACGA+GGG | + | chr6.3:62559905-62559924 | None:intergenic | 25.0% |
| !! | GATTTGAATTTTATCTCTTG+AGG | - | chr6.3:62557716-62557735 | MS.gene42963:CDS | 25.0% |
| !! | GTATTTTTCGCCAAATAATT+AGG | - | chr6.3:62557963-62557982 | MS.gene42963:intron | 25.0% |
| !! | TAGCTTATAGGTATCAATTT+TGG | - | chr6.3:62559358-62559377 | MS.gene42963:CDS | 25.0% |
| !! | TTGATGGACATATATAATTC+AGG | - | chr6.3:62559996-62560015 | MS.gene42963:intron | 25.0% |
| !!! | TGCATATTTTGGTTAAATCT+GGG | + | chr6.3:62560284-62560303 | None:intergenic | 25.0% |
| !!! | TGCCAGATTTATTTTTCTTT+TGG | + | chr6.3:62559574-62559593 | None:intergenic | 25.0% |
| AACAAGAGAAAACGTAAACT+TGG | - | chr6.3:62558964-62558983 | MS.gene42963:CDS | 30.0% | |
| AACATCAGATTGAGAATTGA+AGG | + | chr6.3:62560426-62560445 | None:intergenic | 30.0% | |
| AATGCTGCTAAGAAAGTTAA+AGG | - | chr6.3:62557486-62557505 | MS.gene42963:CDS | 30.0% | |
| ACAAAGGAAAAGAAAGACAT+TGG | - | chr6.3:62557546-62557565 | MS.gene42963:CDS | 30.0% | |
| ACAAGATAAACTCAGTACTA+AGG | - | chr6.3:62558711-62558730 | MS.gene42963:CDS | 30.0% | |
| AGATTATGAGGCTTTCTATA+AGG | + | chr6.3:62558592-62558611 | None:intergenic | 30.0% | |
| AGTAATTACCTGCATTGTTA+TGG | + | chr6.3:62559950-62559969 | None:intergenic | 30.0% | |
| ATTATGAGGCTTTCTATAAG+GGG | + | chr6.3:62558590-62558609 | None:intergenic | 30.0% | |
| ATTCATCATACAGGTAATCA+TGG | - | chr6.3:62559228-62559247 | MS.gene42963:CDS | 30.0% | |
| CTCCTAATGTTCATAAGATT+AGG | - | chr6.3:62558662-62558681 | MS.gene42963:CDS | 30.0% | |
| GAGTAATATGATTCCAAATC+AGG | - | chr6.3:62560133-62560152 | MS.gene42963:intron | 30.0% | |
| GATAAGATCATTCATCATAC+AGG | - | chr6.3:62559219-62559238 | MS.gene42963:CDS | 30.0% | |
| GATTATGAGGCTTTCTATAA+GGG | + | chr6.3:62558591-62558610 | None:intergenic | 30.0% | |
| GCTAAATACGAAACAGAAAA+TGG | - | chr6.3:62558337-62558356 | MS.gene42963:intron | 30.0% | |
| GGAAAAAGAGTTAACTATTG+AGG | - | chr6.3:62557435-62557454 | MS.gene42963:CDS | 30.0% | |
| GTACTAAGGAAACATCTATT+TGG | - | chr6.3:62558725-62558744 | MS.gene42963:CDS | 30.0% | |
| TCACAATTTGATTATGGTCA+GGG | - | chr6.3:62559510-62559529 | MS.gene42963:CDS | 30.0% | |
| TGCAAAACAAGAAAAAGGAA+AGG | - | chr6.3:62557414-62557433 | MS.gene42963:CDS | 30.0% | |
| TGGCATCATCAAGTTATAAT+TGG | - | chr6.3:62560465-62560484 | MS.gene42963:CDS | 30.0% | |
| TTCACAATTTGATTATGGTC+AGG | - | chr6.3:62559509-62559528 | MS.gene42963:CDS | 30.0% | |
| ! | AAAATTTTCATGGCCATCAA+GGG | - | chr6.3:62560318-62560337 | MS.gene42963:CDS | 30.0% |
| ! | AAGTAATTATGTGCTTGTTG+AGG | - | chr6.3:62558831-62558850 | MS.gene42963:CDS | 30.0% |
| ! | CAAATGGACCAAAATTTTCA+TGG | - | chr6.3:62560308-62560327 | MS.gene42963:CDS | 30.0% |
| ! | CATCATTGAAGTATTCATCA+TGG | + | chr6.3:62560225-62560244 | None:intergenic | 30.0% |
| ! | CTAACATAATTTTTACGAGG+GGG | + | chr6.3:62559903-62559922 | None:intergenic | 30.0% |
| ! | CTAGGAAAATGTTAGCTTAT+AGG | - | chr6.3:62559346-62559365 | MS.gene42963:CDS | 30.0% |
| ! | GCTAACATAATTTTTACGAG+GGG | + | chr6.3:62559904-62559923 | None:intergenic | 30.0% |
| !! | TGACTCATGCTTTAGAAAAT+AGG | - | chr6.3:62559478-62559497 | MS.gene42963:CDS | 30.0% |
| !!! | CTGCATATTTTGGTTAAATC+TGG | + | chr6.3:62560285-62560304 | None:intergenic | 30.0% |
| !!! | TGTTCCTCACATTTTTTTCT+TGG | + | chr6.3:62559068-62559087 | None:intergenic | 30.0% |
| AAAGCCTCATAATCTGAAGA+AGG | - | chr6.3:62558597-62558616 | MS.gene42963:intron | 35.0% | |
| AACAATGCAGGTAATTACTC+AGG | - | chr6.3:62559951-62559970 | MS.gene42963:intron | 35.0% | |
| AAGGCAAAGTTCTCAAAATC+AGG | + | chr6.3:62558118-62558137 | None:intergenic | 35.0% | |
| AAGTGAACCTAATATGGTGT+CGG | + | chr6.3:62558431-62558450 | None:intergenic | 35.0% | |
| ACATTAGCTACTTCAGCATT+AGG | + | chr6.3:62560374-62560393 | None:intergenic | 35.0% | |
| AGTTATGATTCTCGTGTTGA+AGG | - | chr6.3:62558808-62558827 | MS.gene42963:CDS | 35.0% | |
| ATAGCACCATTATGAACTCT+GGG | + | chr6.3:62557361-62557380 | None:intergenic | 35.0% | |
| ATGAGATTTAGTGAAGATCC+CGG | - | chr6.3:62558559-62558578 | MS.gene42963:intron | 35.0% | |
| ATGTATCCCAGAGTTCATAA+TGG | - | chr6.3:62557352-62557371 | MS.gene42963:CDS | 35.0% | |
| CAAACCTTCTTCAGATTATG+AGG | + | chr6.3:62558604-62558623 | None:intergenic | 35.0% | |
| CAACTTCATCCATTTCGAAT+TGG | + | chr6.3:62559131-62559150 | None:intergenic | 35.0% | |
| CACAATTTGATTATGGTCAG+GGG | - | chr6.3:62559511-62559530 | MS.gene42963:CDS | 35.0% | |
| CACTTGCATGATAGATTTGA+TGG | + | chr6.3:62560091-62560110 | None:intergenic | 35.0% | |
| CAGGTACATGTTAATGATGA+TGG | - | chr6.3:62558180-62558199 | MS.gene42963:intron | 35.0% | |
| CCAAAATATGCAGCATCAAA+TGG | - | chr6.3:62560292-62560311 | MS.gene42963:CDS | 35.0% | |
| CTCATAATCTGAAGAAGGTT+TGG | - | chr6.3:62558602-62558621 | MS.gene42963:intron | 35.0% | |
| CTTTGATTAACACCCTGATT+TGG | + | chr6.3:62560149-62560168 | None:intergenic | 35.0% | |
| GTGCACAAGAACACATATTA+AGG | - | chr6.3:62557572-62557591 | MS.gene42963:CDS | 35.0% | |
| GTGCATGTTATGATTAACAC+CGG | + | chr6.3:62560069-62560088 | None:intergenic | 35.0% | |
| GTTAACTATTGAGGAACTAG+AGG | - | chr6.3:62557444-62557463 | MS.gene42963:CDS | 35.0% | |
| TAATCTGAAGAAGGTTTGGA+AGG | - | chr6.3:62558606-62558625 | MS.gene42963:intron | 35.0% | |
| TATGGATTCCATAACAATGC+AGG | - | chr6.3:62559939-62559958 | MS.gene42963:intron | 35.0% | |
| TCATTTACTAGATATGTGGC+TGG | + | chr6.3:62559264-62559283 | None:intergenic | 35.0% | |
| TCCACCAAGAAAAAAATGTG+AGG | - | chr6.3:62559061-62559080 | MS.gene42963:CDS | 35.0% | |
| TCTGAGCTTATAGTGAACTA+AGG | - | chr6.3:62557870-62557889 | MS.gene42963:intron | 35.0% | |
| TGAATGATCTTATCTGCAAC+AGG | + | chr6.3:62559213-62559232 | None:intergenic | 35.0% | |
| TGAGAGAAGTGAACCTAATA+TGG | + | chr6.3:62558437-62558456 | None:intergenic | 35.0% | |
| TGATGCTTACAACAACTTTG+TGG | - | chr6.3:62560445-62560464 | MS.gene42963:CDS | 35.0% | |
| TGCATGTTATGATTAACACC+GGG | + | chr6.3:62560068-62560087 | None:intergenic | 35.0% | |
| TTATGAGGCTTTCTATAAGG+GGG | + | chr6.3:62558589-62558608 | None:intergenic | 35.0% | |
| TTTCTTGGTGGAATTCATGT+TGG | + | chr6.3:62559053-62559072 | None:intergenic | 35.0% | |
| ! | AAATTTTCATGGCCATCAAG+GGG | - | chr6.3:62560319-62560338 | MS.gene42963:CDS | 35.0% |
| ! | AATTGACTTTGTTCACCTCA+AGG | + | chr6.3:62558137-62558156 | None:intergenic | 35.0% |
| ! | AGAAGTGGTTTCTGATTTGA+TGG | - | chr6.3:62559980-62559999 | MS.gene42963:intron | 35.0% |
| ! | AGAATTGAAGGTTGTTGTTG+AGG | + | chr6.3:62560414-62560433 | None:intergenic | 35.0% |
| ! | ATTTTATCTCTTGAGGCAAG+TGG | - | chr6.3:62557723-62557742 | MS.gene42963:CDS | 35.0% |
| ! | CAAAATTTTCATGGCCATCA+AGG | - | chr6.3:62560317-62560336 | MS.gene42963:CDS | 35.0% |
| ! | CCATTTGATGCTGCATATTT+TGG | + | chr6.3:62560295-62560314 | None:intergenic | 35.0% |
| !! | AGTGATTTTGATGTTGTGGA+AGG | - | chr6.3:62558856-62558875 | MS.gene42963:CDS | 35.0% |
| !! | ATTTTGAGAACTTTGCCTTG+AGG | - | chr6.3:62558119-62558138 | MS.gene42963:intron | 35.0% |
| !! | CTTGATGGCCATGAAAATTT+TGG | + | chr6.3:62560319-62560338 | None:intergenic | 35.0% |
| !! | GGTTTGGAAGGTTTTTGTTT+TGG | - | chr6.3:62558618-62558637 | MS.gene42963:CDS | 35.0% |
| !!! | TCCTCACATTTTTTTCTTGG+TGG | + | chr6.3:62559065-62559084 | None:intergenic | 35.0% |
| AACATGTACCTGTTCACACT+AGG | + | chr6.3:62558172-62558191 | None:intergenic | 40.0% | |
| AATGCAGGTAATTACTCAGG+AGG | - | chr6.3:62559954-62559973 | MS.gene42963:intron | 40.0% | |
| ACCATGTTCATAACTGGCAT+TGG | + | chr6.3:62560254-62560273 | None:intergenic | 40.0% | |
| AGTGAACCTAATATGGTGTC+GGG | + | chr6.3:62558430-62558449 | None:intergenic | 40.0% | |
| ATCATCGTCATCGTCGTATA+AGG | - | chr6.3:62558936-62558955 | MS.gene42963:CDS | 40.0% | |
| CAGCAACAACCAATTCGAAA+TGG | - | chr6.3:62559119-62559138 | MS.gene42963:CDS | 40.0% | |
| CGGAGATTTCCATTGGAAAA+AGG | - | chr6.3:62558487-62558506 | MS.gene42963:intron | 40.0% | |
| CTATCATGCAAGTGTTCAAC+AGG | - | chr6.3:62560097-62560116 | MS.gene42963:intron | 40.0% | |
| CTATCGCTAACCATTCAAGA+GGG | - | chr6.3:62557377-62557396 | MS.gene42963:CDS | 40.0% | |
| GATAGCACCATTATGAACTC+TGG | + | chr6.3:62557362-62557381 | None:intergenic | 40.0% | |
| GCTACTCCAAACAATTCTGT+TGG | - | chr6.3:62559640-62559659 | MS.gene42963:CDS | 40.0% | |
| GGAACATAGTCAGACAATCA+AGG | - | chr6.3:62558683-62558702 | MS.gene42963:CDS | 40.0% | |
| GGTTCATCAGACAATTTACG+AGG | - | chr6.3:62558265-62558284 | MS.gene42963:intron | 40.0% | |
| GTTGCAACCATGTTCATAAC+TGG | + | chr6.3:62560260-62560279 | None:intergenic | 40.0% | |
| TATCGCTAACCATTCAAGAG+GGG | - | chr6.3:62557378-62557397 | MS.gene42963:CDS | 40.0% | |
| TCATCGTCATCGTCGTATAA+GGG | - | chr6.3:62558937-62558956 | MS.gene42963:CDS | 40.0% | |
| TCCAATGCCAGTTATGAACA+TGG | - | chr6.3:62560250-62560269 | MS.gene42963:intron | 40.0% | |
| TGGAATCATCGTACTCATGA+CGG | + | chr6.3:62560042-62560061 | None:intergenic | 40.0% | |
| TGGAATTCATGTTGGTCAAG+AGG | + | chr6.3:62559045-62559064 | None:intergenic | 40.0% | |
| TTATGATTAACACCGGGAGT+TGG | + | chr6.3:62560062-62560081 | None:intergenic | 40.0% | |
| TTCAGCGAGTGAAGTGTAAT+TGG | + | chr6.3:62558400-62558419 | None:intergenic | 40.0% | |
| TTGTCTGATGAACCACTCAT+TGG | + | chr6.3:62558259-62558278 | None:intergenic | 40.0% | |
| ! | AATTTTCATGGCCATCAAGG+GGG | - | chr6.3:62560320-62560339 | MS.gene42963:CDS | 40.0% |
| ! | GTTGTTGCTGCTTCCTATTT+CGG | + | chr6.3:62559109-62559128 | None:intergenic | 40.0% |
| !! | CATTTTACTAGCGCCGAAAT+AGG | - | chr6.3:62559093-62559112 | MS.gene42963:CDS | 40.0% |
| !! | GATTTTGATGTTGTGGAAGG+TGG | - | chr6.3:62558859-62558878 | MS.gene42963:CDS | 40.0% |
| !! | GGCAAGTGATTTTGATGTTG+TGG | - | chr6.3:62558852-62558871 | MS.gene42963:CDS | 40.0% |
| !!! | GAAGGTTTTTGTTTTGGCAG+CGG | - | chr6.3:62558624-62558643 | MS.gene42963:CDS | 40.0% |
| AACTGACACCTAGTGTGAAC+AGG | - | chr6.3:62558161-62558180 | MS.gene42963:intron | 45.0% | |
| AATGGAAATCTCCGTTGTGG+TGG | + | chr6.3:62558481-62558500 | None:intergenic | 45.0% | |
| ACCACAACGGAGATTTCCAT+TGG | - | chr6.3:62558480-62558499 | MS.gene42963:intron | 45.0% | |
| AGTACGATGATTCCAACTCC+CGG | - | chr6.3:62560047-62560066 | MS.gene42963:intron | 45.0% | |
| ATGCTACCCCATTGATGTGA+CGG | + | chr6.3:62559543-62559562 | None:intergenic | 45.0% | |
| ATGGAAATCTCCGTTGTGGT+GGG | + | chr6.3:62558480-62558499 | None:intergenic | 45.0% | |
| ATGGAAGTTTGTGATGCTCG+TGG | - | chr6.3:62558199-62558218 | MS.gene42963:intron | 45.0% | |
| ATTTGACATAAACGGGCCAG+CGG | - | chr6.3:62558309-62558328 | MS.gene42963:intron | 45.0% | |
| CATCAGACAATTTACGAGGC+TGG | - | chr6.3:62558269-62558288 | MS.gene42963:intron | 45.0% | |
| CTCCATGATTCTTTCCCTGT+TGG | + | chr6.3:62558532-62558551 | None:intergenic | 45.0% | |
| GAACTACCCGACACCATATT+AGG | - | chr6.3:62558421-62558440 | MS.gene42963:intron | 45.0% | |
| GCTATCGCTAACCATTCAAG+AGG | - | chr6.3:62557376-62557395 | MS.gene42963:CDS | 45.0% | |
| TATGGAGTAATACCCCACGA+GGG | - | chr6.3:62558229-62558248 | MS.gene42963:intron | 45.0% | |
| TCACATCAATGGGGTAGCAT+TGG | - | chr6.3:62559543-62559562 | MS.gene42963:CDS | 45.0% | |
| TCCAATGGAAATCTCCGTTG+TGG | + | chr6.3:62558484-62558503 | None:intergenic | 45.0% | |
| TCGTATTTAGCAATTGCCGC+TGG | + | chr6.3:62558328-62558347 | None:intergenic | 45.0% | |
| TTGAAGCTTCCCCTCTTGAA+TGG | + | chr6.3:62557390-62557409 | None:intergenic | 45.0% | |
| ! | AGCTTCACTGCTGCTGATTA+TGG | - | chr6.3:62559921-62559940 | MS.gene42963:intron | 45.0% |
| ! | GACGATGACGATGATGATGA+TGG | + | chr6.3:62558931-62558950 | None:intergenic | 45.0% |
| ! | GGAGGAATGCCTTTTTCCAA+TGG | + | chr6.3:62558499-62558518 | None:intergenic | 45.0% |
| ! | GTTGAGGCATTTGCTTGCAT+TGG | + | chr6.3:62560398-62560417 | None:intergenic | 45.0% |
| !! | AAAAAGGCATTCCTCCACCA+TGG | - | chr6.3:62558503-62558522 | MS.gene42963:intron | 45.0% |
| AGCTATTTGCACCCCCTTGA+TGG | + | chr6.3:62560334-62560353 | None:intergenic | 50.0% | |
| CAGACAATTTACGAGGCTGG+TGG | - | chr6.3:62558272-62558291 | MS.gene42963:intron | 50.0% | |
| CGAATCCCGTCACATCAATG+GGG | - | chr6.3:62559534-62559553 | MS.gene42963:CDS | 50.0% | |
| CTATGGAGTAATACCCCACG+AGG | - | chr6.3:62558228-62558247 | MS.gene42963:intron | 50.0% | |
| CTTTCTATAAGGGGGTAGGC+CGG | + | chr6.3:62558581-62558600 | None:intergenic | 50.0% | |
| GAGGCTTTCTATAAGGGGGT+AGG | + | chr6.3:62558585-62558604 | None:intergenic | 50.0% | |
| GATGCTCGTGGCTTCATCTA+TGG | - | chr6.3:62558211-62558230 | MS.gene42963:intron | 50.0% | |
| GCAGGTAATTACTCAGGAGG+AGG | - | chr6.3:62559957-62559976 | MS.gene42963:intron | 50.0% | |
| GCGAATCCCGTCACATCAAT+GGG | - | chr6.3:62559533-62559552 | MS.gene42963:CDS | 50.0% | |
| GGCCAACAGGGAAAGAATCA+TGG | - | chr6.3:62558527-62558546 | MS.gene42963:intron | 50.0% | |
| TGCTACCCCATTGATGTGAC+GGG | + | chr6.3:62559542-62559561 | None:intergenic | 50.0% | |
| TTACTCAGGAGGAGGAGAAG+TGG | - | chr6.3:62559965-62559984 | MS.gene42963:intron | 50.0% | |
| TTTCTATAAGGGGGTAGGCC+GGG | + | chr6.3:62558580-62558599 | None:intergenic | 50.0% | |
| !! | ACTCATTGGTTTGCCCTCGT+GGG | + | chr6.3:62558245-62558264 | None:intergenic | 50.0% |
| CACGAGGGCAAACCAATGAG+TGG | - | chr6.3:62558244-62558263 | MS.gene42963:intron | 55.0% | |
| CGCATTGTGACCCACCACAA+CGG | - | chr6.3:62558467-62558486 | MS.gene42963:intron | 55.0% | |
| GGCGAATCCCGTCACATCAA+TGG | - | chr6.3:62559532-62559551 | MS.gene42963:CDS | 55.0% | |
| TACCGCAGCTTGCACACGTT+GGG | + | chr6.3:62559190-62559209 | None:intergenic | 55.0% | |
| TCTTTCCCTGTTGGCCACCA+TGG | + | chr6.3:62558523-62558542 | None:intergenic | 55.0% | |
| ! | AAGGCATTCCTCCACCATGG+TGG | - | chr6.3:62558506-62558525 | MS.gene42963:intron | 55.0% |
| !! | CACTCATTGGTTTGCCCTCG+TGG | + | chr6.3:62558246-62558265 | None:intergenic | 55.0% |
| !! | CGTTGTGGTGGGTCACAATG+CGG | + | chr6.3:62558469-62558488 | None:intergenic | 55.0% |
| !! | CTCATTGGTTTGCCCTCGTG+GGG | + | chr6.3:62558244-62558263 | None:intergenic | 55.0% |
| CTCCACCATGGTGGCCAACA+GGG | - | chr6.3:62558515-62558534 | MS.gene42963:intron | 60.0% | |
| GCTTGCACACGTTGGGCAAG+AGG | + | chr6.3:62559183-62559202 | None:intergenic | 60.0% | |
| GTACCGCAGCTTGCACACGT+TGG | + | chr6.3:62559191-62559210 | None:intergenic | 60.0% | |
| TGCCCAACGTGTGCAAGCTG+CGG | - | chr6.3:62559185-62559204 | MS.gene42963:CDS | 60.0% | |
| TTCCCTGTTGGCCACCATGG+TGG | + | chr6.3:62558520-62558539 | None:intergenic | 60.0% | |
| CCTCCACCATGGTGGCCAAC+AGG | - | chr6.3:62558514-62558533 | MS.gene42963:intron | 65.0% | |
| CCTGTTGGCCACCATGGTGG+AGG | + | chr6.3:62558517-62558536 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 62557352 | 62560496 | 62557352 | ID=MS.gene42963 |
| chr6.3 | mRNA | 62557352 | 62560496 | 62557352 | ID=MS.gene42963.t1;Parent=MS.gene42963 |
| chr6.3 | exon | 62560255 | 62560496 | 62560255 | ID=MS.gene42963.t1.exon1;Parent=MS.gene42963.t1 |
| chr6.3 | CDS | 62560255 | 62560496 | 62560255 | ID=cds.MS.gene42963.t1;Parent=MS.gene42963.t1 |
| chr6.3 | exon | 62558608 | 62559665 | 62558608 | ID=MS.gene42963.t1.exon2;Parent=MS.gene42963.t1 |
| chr6.3 | CDS | 62558608 | 62559665 | 62558608 | ID=cds.MS.gene42963.t1;Parent=MS.gene42963.t1 |
| chr6.3 | exon | 62557352 | 62557887 | 62557352 | ID=MS.gene42963.t1.exon3;Parent=MS.gene42963.t1 |
| chr6.3 | CDS | 62557352 | 62557887 | 62557352 | ID=cds.MS.gene42963.t1;Parent=MS.gene42963.t1 |
| Gene Sequence |
| Protein sequence |
