AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene43024

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene43024.t1 MTR_8g051580 95.028 181 9 0 1 181 1 181 1.96e-125 350
MS.gene43024.t1 MTR_1g047550 57.714 175 74 0 1 175 1 175 5.61e-70 210
MS.gene43024.t1 MTR_8g046350 63.314 169 56 2 1 169 1 163 8.76e-69 206
MS.gene43024.t1 MTR_1g063160 56.000 175 77 0 1 175 1 175 2.59e-67 203
MS.gene43024.t1 MTR_1g054265 57.143 168 72 0 1 168 1 168 1.74e-64 196
MS.gene43024.t1 MTR_8g079502 56.627 166 72 0 1 166 1 166 1.25e-63 194
MS.gene43024.t1 MTR_4g131030 51.872 187 73 1 1 170 1 187 1.34e-62 192
MS.gene43024.t1 MTR_4g094632 41.667 168 78 5 1 164 1 152 6.27e-30 107
MS.gene43024.t1 MTR_3g080940 48.182 110 47 2 1 104 8 113 4.49e-25 96.7
MS.gene43024.t1 MTR_1g106070 46.535 101 52 1 2 100 9 109 1.21e-24 95.1
MS.gene43024.t1 MTR_2g105290 44.444 99 53 1 1 99 11 107 1.16e-23 92.0
MS.gene43024.t1 MTR_5g045560 43.925 107 58 1 1 107 8 112 1.42e-23 93.6
MS.gene43024.t1 MTR_1g105920 37.662 154 84 4 2 143 9 162 1.56e-23 93.6
MS.gene43024.t1 MTR_3g052870 59.420 69 28 0 2 70 9 77 3.49e-23 92.0
MS.gene43024.t1 MTR_8g086290 40.777 103 59 1 2 104 12 112 3.77e-23 90.9
MS.gene43024.t1 MTR_3g052920 57.971 69 29 0 2 70 9 77 5.74e-23 92.0
MS.gene43024.t1 MTR_4g094638 42.991 107 58 1 1 104 1 107 1.86e-22 89.0
MS.gene43024.t1 MTR_2g030740 57.971 69 29 0 2 70 9 77 6.37e-22 89.4
MS.gene43024.t1 MTR_1g105910 57.971 69 29 0 2 70 9 77 6.44e-22 89.4
MS.gene43024.t1 MTR_1g108580 40.476 126 70 2 2 125 9 131 7.35e-22 89.0
MS.gene43024.t1 MTR_3g030770 39.837 123 58 3 2 108 9 131 1.47e-21 88.2
MS.gene43024.t1 MTR_8g043650 56.522 69 30 0 2 70 9 77 1.54e-21 88.2
MS.gene43024.t1 MTR_1g108510 56.522 69 30 0 2 70 9 77 1.69e-21 87.8
MS.gene43024.t1 MTR_5g053390 35.897 156 84 3 2 143 9 162 1.98e-21 87.8
MS.gene43024.t1 MTR_1g012570 55.072 69 31 0 2 70 9 77 3.46e-21 87.4
MS.gene43024.t1 MTR_1g077360 50.633 79 39 0 2 80 9 87 3.80e-21 87.0
MS.gene43024.t1 MTR_5g055100 45.918 98 40 1 2 99 9 93 5.97e-21 86.7
MS.gene43024.t1 MTR_0121s0100 55.072 69 31 0 2 70 9 77 9.58e-21 83.6
MS.gene43024.t1 MTR_1g075600 56.522 69 30 0 2 70 9 77 1.21e-20 85.9
MS.gene43024.t1 MTR_2g093190 41.600 125 68 2 2 124 9 130 2.02e-20 85.1
MS.gene43024.t1 MTR_7g028448 48.649 74 38 0 17 90 27 100 2.07e-20 83.6
MS.gene43024.t1 MTR_4g036915 48.649 74 38 0 17 90 27 100 2.07e-20 83.6
MS.gene43024.t1 MTR_2g085280 50.633 79 39 0 2 80 9 87 3.40e-20 84.7
MS.gene43024.t1 MTR_2g085250 50.633 79 39 0 2 80 9 87 3.98e-20 84.3
MS.gene43024.t1 MTR_3g030780 50.725 69 34 0 2 70 9 77 7.40e-20 81.3
MS.gene43024.t1 MTR_0121s0080 53.521 71 33 0 2 72 9 79 1.14e-19 83.2
MS.gene43024.t1 MTR_1g105905 64.151 53 19 0 18 70 8 60 1.55e-18 79.7
MS.gene43024.t1 MTR_7g062350 58.333 60 25 0 13 72 32 91 2.12e-18 80.1
MS.gene43024.t1 MTR_4g084740 34.225 187 105 8 1 175 1 181 7.11e-18 79.7
MS.gene43024.t1 MTR_2g009890 52.174 69 33 0 1 69 1 69 9.04e-18 79.0
MS.gene43024.t1 MTR_5g066180 46.377 69 37 0 1 69 1 69 1.15e-17 77.8
MS.gene43024.t1 MTR_2g017865 34.821 112 70 1 1 112 16 124 1.48e-17 78.2
MS.gene43024.t1 MTR_4g127140 48.101 79 41 0 1 79 11 89 1.63e-17 76.3
MS.gene43024.t1 MTR_5g031000 50.725 69 34 0 1 69 1 69 1.75e-17 77.4
MS.gene43024.t1 MTR_1g053070 45.570 79 43 0 1 79 1 79 1.79e-17 77.4
MS.gene43024.t1 MTR_5g031000 50.725 69 34 0 1 69 1 69 2.04e-17 77.0
MS.gene43024.t1 MTR_1g101970 42.667 75 43 0 1 75 1 75 4.00e-17 75.5
MS.gene43024.t1 MTR_0003s0590 50.725 69 34 0 1 69 1 69 4.12e-17 76.6
MS.gene43024.t1 MTR_4g093970 37.857 140 71 3 1 132 27 158 6.49e-17 75.9
MS.gene43024.t1 MTR_5g046790 46.479 71 35 1 1 71 1 68 6.55e-17 75.5
MS.gene43024.t1 MTR_3g113030 38.679 106 62 1 1 106 1 103 8.07e-17 75.5
MS.gene43024.t1 MTR_5g066960 56.667 60 26 0 1 60 1 60 8.17e-17 71.2
MS.gene43024.t1 MTR_3g067875 62.500 48 18 0 18 65 8 55 8.24e-17 71.2
MS.gene43024.t1 MTR_8g087860 34.351 131 82 2 1 130 17 144 1.22e-16 75.1
MS.gene43024.t1 MTR_8g033270 44.000 75 42 0 1 75 1 75 1.35e-16 75.1
MS.gene43024.t1 MTR_8g033220 36.538 104 64 2 1 104 1 102 1.52e-16 74.7
MS.gene43024.t1 MTR_7g075870 46.377 69 37 0 1 69 1 69 1.62e-16 74.3
MS.gene43024.t1 MTR_8g033220 36.538 104 64 2 1 104 1 102 2.24e-16 74.3
MS.gene43024.t1 MTR_1g108500 56.667 60 26 0 18 77 113 172 2.53e-16 75.5
MS.gene43024.t1 MTR_3g452380 49.275 69 35 0 1 69 16 84 2.56e-16 74.3
MS.gene43024.t1 MTR_8g066260 46.479 71 35 1 1 71 1 68 5.93e-16 73.2
MS.gene43024.t1 MTR_3g005530 44.928 69 38 0 1 69 1 69 6.26e-16 73.2
MS.gene43024.t1 MTR_7g016600 33.898 177 94 6 1 164 1 167 7.29e-16 73.2
MS.gene43024.t1 MTR_2g461710 50.877 57 28 0 1 57 1 57 8.82e-16 68.6
MS.gene43024.t1 MTR_4g109830 46.479 71 35 1 1 71 1 68 9.99e-16 72.8
MS.gene43024.t1 MTR_5g021270 48.387 62 32 0 1 62 1 62 1.08e-15 72.4
MS.gene43024.t1 MTR_5g021270 48.387 62 32 0 1 62 1 62 1.13e-15 72.4
MS.gene43024.t1 MTR_4g102530 46.377 69 37 0 1 69 1 69 1.33e-15 71.6
MS.gene43024.t1 MTR_7g075870 47.143 70 36 1 1 69 1 70 2.25e-15 71.2
MS.gene43024.t1 MTR_5g046870 52.632 57 27 0 1 57 1 57 2.58e-15 68.9
MS.gene43024.t1 MTR_6g464720 31.655 139 85 4 1 134 1 134 3.03e-15 71.6
MS.gene43024.t1 MTR_7g016630 41.429 70 40 1 1 69 1 70 4.21e-15 71.2
MS.gene43024.t1 MTR_6g015975 31.609 174 102 5 1 164 1 167 4.47e-15 71.2
MS.gene43024.t1 MTR_8g097090 50.820 61 30 0 1 61 1 61 5.04e-15 70.9
MS.gene43024.t1 MTR_3g084980 52.459 61 29 0 1 61 1 61 5.39e-15 70.9
MS.gene43024.t1 MTR_4g093030 39.823 113 62 3 1 111 1 109 6.07e-15 68.9
MS.gene43024.t1 MTR_5g032520 44.615 65 36 0 1 65 1 65 6.84e-15 70.1
MS.gene43024.t1 MTR_4g036050 54.545 55 25 0 1 55 1 55 8.21e-15 68.9
MS.gene43024.t1 MTR_4g036050 54.545 55 25 0 1 55 1 55 8.31e-15 69.3
MS.gene43024.t1 MTR_4g036050 54.545 55 25 0 1 55 1 55 8.61e-15 69.7
MS.gene43024.t1 MTR_4g036050 54.545 55 25 0 1 55 1 55 9.61e-15 69.3
MS.gene43024.t1 MTR_5g032150 44.615 65 36 0 1 65 1 65 9.65e-15 69.7
MS.gene43024.t1 MTR_4g109810 46.774 62 33 0 1 62 1 62 1.96e-14 69.3
MS.gene43024.t1 MTR_1g038300 43.662 71 38 1 1 69 1 71 2.13e-14 68.9
MS.gene43024.t1 MTR_3g067910 50.943 53 26 0 18 70 6 58 2.38e-14 66.2
MS.gene43024.t1 MTR_7g075850 50.820 61 30 0 1 61 1 61 2.47e-14 68.9
MS.gene43024.t1 MTR_3g102570 38.462 104 56 3 1 103 1 97 8.43e-14 68.2
MS.gene43024.t1 MTR_1g029670 41.935 62 36 0 1 62 1 62 1.83e-13 65.5
MS.gene43024.t1 MTR_3g088615 41.935 62 36 0 1 62 1 62 2.48e-13 65.1
MS.gene43024.t1 MTR_1g041615 66.667 42 14 0 17 58 21 62 5.70e-13 63.2
MS.gene43024.t1 MTR_5g041650 30.827 133 65 2 1 106 38 170 5.72e-13 66.2
MS.gene43024.t1 MTR_3g067870 56.250 48 21 0 18 65 92 139 8.32e-13 63.2
MS.gene43024.t1 MTR_3g437790 31.852 135 79 3 19 140 30 164 4.82e-12 62.0
MS.gene43024.t1 MTR_4g108720 29.630 162 81 5 1 135 1 156 8.49e-12 62.8
MS.gene43024.t1 MTR_2g045020 34.266 143 80 5 16 145 29 170 1.91e-11 60.1
MS.gene43024.t1 MTR_3g109930 43.860 57 32 0 17 73 17 73 3.57e-11 59.3
MS.gene43024.t1 MTR_8g022970 48.148 54 28 0 20 73 36 89 3.96e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene43024.t1 AT2G34440 42.197 173 88 4 1 162 1 172 5.00e-32 113
MS.gene43024.t1 AT2G24840 38.509 161 84 4 1 147 62 221 1.30e-29 110
MS.gene43024.t1 AT3G66656 38.857 175 92 3 1 160 1 175 1.60e-29 107
MS.gene43024.t1 AT5G60440 46.341 123 53 3 2 117 7 123 1.07e-25 100
MS.gene43024.t1 AT1G01530 46.903 113 57 3 1 112 6 116 2.90e-23 92.8
MS.gene43024.t1 AT1G47760 55.882 68 30 0 1 68 1 68 4.76e-22 88.2
MS.gene43024.t1 AT4G36590 42.520 127 63 4 2 120 7 131 5.01e-21 87.0
MS.gene43024.t1 AT3G57230 47.674 86 38 1 1 86 1 79 1.78e-20 83.2
MS.gene43024.t1 AT3G57230 47.674 86 38 1 1 86 1 79 4.53e-20 84.3
MS.gene43024.t1 AT3G57230 47.674 86 38 1 1 86 1 79 4.53e-20 84.3
MS.gene43024.t1 AT1G65360 41.322 121 59 4 1 114 6 121 6.01e-20 84.0
MS.gene43024.t1 AT2G22630 53.623 69 32 0 1 69 1 69 3.01e-19 82.0
MS.gene43024.t1 AT2G22630 53.623 69 32 0 1 69 1 69 3.01e-19 82.0
MS.gene43024.t1 AT3G04100 37.410 139 64 3 2 135 14 134 5.10e-19 80.9
MS.gene43024.t1 AT4G37940 53.623 69 32 0 1 69 1 69 5.17e-19 81.3
MS.gene43024.t1 AT4G37940 53.623 69 32 0 1 69 1 69 7.66e-19 80.5
MS.gene43024.t1 AT3G61120 44.872 78 43 0 1 78 1 78 1.18e-18 80.9
MS.gene43024.t1 AT4G37940 53.623 69 32 0 1 69 1 69 1.31e-18 79.0
MS.gene43024.t1 AT1G29962 48.611 72 37 0 2 73 8 79 1.94e-18 79.0
MS.gene43024.t1 AT1G28460 47.222 72 38 0 2 73 8 79 7.35e-18 77.4
MS.gene43024.t1 AT2G03710 35.088 171 89 6 1 158 1 162 1.19e-17 77.0
MS.gene43024.t1 AT2G45660 33.036 112 72 1 1 112 1 109 2.11e-17 75.5
MS.gene43024.t1 AT1G71692 42.553 94 50 2 1 93 1 91 2.18e-17 76.6
MS.gene43024.t1 AT5G15800 33.728 169 94 4 1 158 1 162 6.14e-17 76.3
MS.gene43024.t1 AT5G15800 33.728 169 94 4 1 158 1 162 6.98e-17 76.3
MS.gene43024.t1 AT2G45660 45.714 70 38 0 1 70 1 70 7.01e-17 75.5
MS.gene43024.t1 AT2G45650 46.377 69 37 0 1 69 1 69 7.34e-17 75.9
MS.gene43024.t1 AT2G03710 35.088 171 89 6 1 158 1 162 7.65e-17 76.3
MS.gene43024.t1 AT5G13790 40.741 108 53 2 1 106 1 99 7.94e-17 76.3
MS.gene43024.t1 AT2G03710 35.088 171 89 6 1 158 1 162 9.55e-17 75.9
MS.gene43024.t1 AT3G57390 47.826 69 36 0 1 69 1 69 9.97e-17 75.1
MS.gene43024.t1 AT1G72350 53.623 69 30 1 2 70 43 109 1.01e-16 75.1
MS.gene43024.t1 AT4G22950 47.826 69 36 0 1 69 1 69 1.11e-16 73.9
MS.gene43024.t1 AT1G69120 49.296 71 33 1 1 71 1 68 1.30e-16 75.1
MS.gene43024.t1 AT5G13790 40.367 109 55 3 1 106 1 102 1.42e-16 75.5
MS.gene43024.t1 AT3G57390 47.826 69 36 0 1 69 1 69 2.10e-16 74.7
MS.gene43024.t1 AT4G24540 34.211 114 71 1 1 110 1 114 2.34e-16 73.9
MS.gene43024.t1 AT2G22540 49.231 65 33 0 1 65 1 65 2.67e-16 74.3
MS.gene43024.t1 AT2G22540 49.231 65 33 0 1 65 1 65 2.67e-16 74.3
MS.gene43024.t1 AT1G69120 49.296 71 33 1 1 71 1 68 3.13e-16 74.3
MS.gene43024.t1 AT2G14210 54.098 61 28 0 1 61 1 61 4.01e-16 73.9
MS.gene43024.t1 AT1G22130 50.704 71 34 1 1 70 1 71 4.30e-16 75.1
MS.gene43024.t1 AT5G60910 46.479 71 35 1 1 71 1 68 4.32e-16 73.9
MS.gene43024.t1 AT4G09960 33.036 112 72 1 1 112 1 109 4.62e-16 73.2
MS.gene43024.t1 AT4G09960 33.036 112 72 1 1 112 2 110 4.81e-16 73.6
MS.gene43024.t1 AT3G58780 30.625 160 102 4 1 160 16 166 4.91e-16 74.3
MS.gene43024.t1 AT1G77980 33.862 189 103 8 1 175 1 181 4.94e-16 74.7
MS.gene43024.t1 AT2G14210 54.098 61 28 0 1 61 1 61 4.95e-16 73.6
MS.gene43024.t1 AT4G09960 33.036 112 72 1 1 112 1 109 5.42e-16 73.2
MS.gene43024.t1 AT4G09960 33.036 112 72 1 1 112 11 119 6.27e-16 73.2
MS.gene43024.t1 AT3G30260 54.386 57 26 0 1 57 1 57 6.34e-16 73.6
MS.gene43024.t1 AT4G22950 47.826 69 36 0 1 69 1 69 6.90e-16 72.8
MS.gene43024.t1 AT4G22950 47.826 69 36 0 1 69 1 69 6.90e-16 72.8
MS.gene43024.t1 AT1G24260 33.728 169 95 4 1 157 1 164 7.07e-16 73.6
MS.gene43024.t1 AT4G09960 33.036 112 72 1 1 112 27 135 7.47e-16 73.6
MS.gene43024.t1 AT3G58780 33.929 112 71 1 1 112 16 124 7.53e-16 73.2
MS.gene43024.t1 AT3G58780 31.677 161 98 5 1 161 22 170 8.49e-16 73.2
MS.gene43024.t1 AT1G26310 30.822 146 99 1 1 146 1 144 8.87e-16 73.2
MS.gene43024.t1 AT3G54340 50.000 62 31 0 1 62 1 62 1.05e-15 72.8
MS.gene43024.t1 AT4G09960 33.036 112 72 1 1 112 96 204 1.11e-15 73.9
MS.gene43024.t1 AT4G11880 35.897 117 50 2 1 116 1 93 1.60e-15 71.2
MS.gene43024.t1 AT4G11880 35.897 117 50 2 1 116 1 93 1.60e-15 71.2
MS.gene43024.t1 AT1G46408 50.633 79 33 3 1 73 1 79 1.74e-15 72.4
MS.gene43024.t1 AT3G02310 33.714 175 98 5 1 164 1 168 1.82e-15 71.2
MS.gene43024.t1 AT2G42830 46.377 69 37 0 1 69 16 84 1.85e-15 72.0
MS.gene43024.t1 AT2G42830 46.377 69 37 0 1 69 16 84 1.88e-15 72.0
MS.gene43024.t1 AT5G65070 35.115 131 79 3 1 127 1 129 2.78e-15 69.7
MS.gene43024.t1 AT5G51860 43.662 71 40 0 1 71 1 71 3.23e-15 70.9
MS.gene43024.t1 AT5G51870 31.613 155 84 3 1 146 1 142 3.40e-15 70.1
MS.gene43024.t1 AT1G24260 34.118 170 92 6 1 157 1 163 3.41e-15 71.6
MS.gene43024.t1 AT5G51860 43.662 71 40 0 1 71 1 71 3.67e-15 70.9
MS.gene43024.t1 AT5G51870 31.613 155 84 3 1 146 24 165 4.03e-15 70.5
MS.gene43024.t1 AT5G10140 52.632 57 27 0 1 57 1 57 5.41e-15 69.3
MS.gene43024.t1 AT3G02310 33.714 175 98 6 1 164 1 168 5.45e-15 70.9
MS.gene43024.t1 AT4G11880 35.897 117 50 2 1 116 1 93 5.68e-15 70.5
MS.gene43024.t1 AT4G11880 35.897 117 50 2 1 116 1 93 5.68e-15 70.5
MS.gene43024.t1 AT5G10140 52.632 57 27 0 1 57 1 57 6.46e-15 69.7
MS.gene43024.t1 AT5G51870 31.613 155 84 3 1 146 1 142 6.68e-15 70.1
MS.gene43024.t1 AT1G24260 41.935 93 49 1 1 93 1 88 8.00e-15 70.5
MS.gene43024.t1 AT5G51870 31.613 155 84 3 1 146 1 142 8.32e-15 70.1
MS.gene43024.t1 AT5G65070 35.115 131 79 3 1 127 1 129 8.81e-15 69.7
MS.gene43024.t1 AT5G65070 43.590 78 41 2 1 76 1 77 8.98e-15 70.1
MS.gene43024.t1 AT5G10140 52.632 57 27 0 1 57 1 57 9.03e-15 69.3
MS.gene43024.t1 AT5G51870 31.613 155 84 3 1 146 11 152 9.15e-15 70.1
MS.gene43024.t1 AT4G18960 47.059 68 36 0 2 69 18 85 9.59e-15 70.5
MS.gene43024.t1 AT5G10140 51.724 58 28 0 1 58 1 58 1.14e-14 68.9
MS.gene43024.t1 AT4G37435 28.814 177 93 4 1 150 1 171 1.37e-14 68.6
MS.gene43024.t1 AT3G58780 39.535 86 39 1 1 73 16 101 1.46e-14 69.7
MS.gene43024.t1 AT1G28450 43.056 72 41 0 2 73 8 79 2.08e-14 68.2
MS.gene43024.t1 AT2G22540 50.877 57 28 0 1 57 1 57 2.19e-14 68.9
MS.gene43024.t1 AT5G20240 47.619 63 33 0 1 63 1 63 2.34e-14 67.4
MS.gene43024.t1 AT3G58780 50.820 61 30 0 1 61 16 76 2.71e-14 69.3
MS.gene43024.t1 AT5G65070 42.857 70 39 1 1 69 1 70 3.99e-14 68.2
MS.gene43024.t1 AT5G20240 47.619 63 33 0 1 63 1 63 4.45e-14 67.8
MS.gene43024.t1 AT5G49490 41.176 102 45 2 3 100 46 136 6.18e-14 68.6
MS.gene43024.t1 AT5G65070 38.462 91 54 1 1 91 1 89 8.96e-14 67.0
MS.gene43024.t1 AT5G23260 56.140 57 25 0 1 57 17 73 1.01e-13 67.8
MS.gene43024.t1 AT5G23260 56.140 57 25 0 1 57 17 73 1.01e-13 67.8
MS.gene43024.t1 AT5G23260 56.140 57 25 0 1 57 1 57 1.09e-13 67.4
MS.gene43024.t1 AT5G65050 52.727 55 26 0 1 55 1 55 1.16e-13 66.2
MS.gene43024.t1 AT5G62165 39.130 69 42 0 1 69 1 69 1.30e-13 65.5
MS.gene43024.t1 AT5G62165 39.130 69 42 0 1 69 1 69 1.30e-13 65.5
MS.gene43024.t1 AT5G62165 39.130 69 42 0 1 69 1 69 1.30e-13 65.5
MS.gene43024.t1 AT5G23260 56.140 57 25 0 1 57 1 57 1.31e-13 67.0
MS.gene43024.t1 AT5G65060 34.091 132 65 2 1 131 1 111 1.64e-13 65.9
MS.gene43024.t1 AT5G65080 44.286 70 38 1 1 69 8 77 1.88e-13 65.9
MS.gene43024.t1 AT5G65060 54.545 55 25 0 1 55 1 55 2.15e-13 65.5
MS.gene43024.t1 AT1G17310 57.407 54 21 1 17 70 63 114 2.45e-13 65.9
MS.gene43024.t1 AT5G65060 54.545 55 25 0 1 55 1 55 2.56e-13 65.5
MS.gene43024.t1 AT5G62165 30.693 101 59 1 1 90 1 101 2.62e-13 63.5
MS.gene43024.t1 AT5G62165 39.130 69 42 0 1 69 1 69 2.72e-13 64.7
MS.gene43024.t1 AT5G62165 39.130 69 42 0 1 69 1 69 2.72e-13 64.7
MS.gene43024.t1 AT5G62165 39.130 69 42 0 1 69 1 69 2.72e-13 64.7
MS.gene43024.t1 AT5G62165 39.130 69 42 0 1 69 1 69 2.72e-13 64.7
MS.gene43024.t1 AT5G62165 39.130 69 42 0 1 69 1 69 2.72e-13 64.7
MS.gene43024.t1 AT1G17310 57.407 54 21 1 17 70 74 125 3.02e-13 65.9
MS.gene43024.t1 AT5G62165 28.723 188 98 6 1 166 1 174 3.17e-13 65.5
MS.gene43024.t1 AT5G62165 28.723 188 98 6 1 166 1 174 3.17e-13 65.5
MS.gene43024.t1 AT5G62165 28.723 188 98 6 1 166 1 174 3.17e-13 65.5
MS.gene43024.t1 AT1G77950 40.845 71 41 1 1 70 1 71 3.20e-13 66.2
MS.gene43024.t1 AT1G77950 40.845 71 41 1 1 70 1 71 3.20e-13 66.2
MS.gene43024.t1 AT1G77950 40.845 71 41 1 1 70 1 71 3.20e-13 66.2
MS.gene43024.t1 AT1G77950 40.845 71 41 1 1 70 1 71 3.20e-13 66.2
MS.gene43024.t1 AT5G62165 39.130 69 42 0 1 69 1 69 3.38e-13 65.1
MS.gene43024.t1 AT5G62165 39.130 69 42 0 1 69 1 69 3.38e-13 65.1
MS.gene43024.t1 AT5G65050 52.727 55 26 0 1 55 1 55 3.60e-13 65.1
MS.gene43024.t1 AT1G18750 42.466 73 40 1 1 71 1 73 4.25e-13 66.6
MS.gene43024.t1 AT5G65050 52.727 55 26 0 1 55 1 55 4.35e-13 64.7
MS.gene43024.t1 AT5G65050 52.727 55 26 0 1 55 1 55 4.35e-13 64.7
MS.gene43024.t1 AT1G18750 43.662 71 38 1 1 69 1 71 4.84e-13 66.6
MS.gene43024.t1 AT1G18750 43.662 71 38 1 1 69 1 71 4.87e-13 66.6
MS.gene43024.t1 AT1G60920 43.421 76 38 2 3 73 5 80 9.30e-13 63.9
MS.gene43024.t1 AT5G65080 48.214 56 29 0 1 56 8 63 1.00e-12 63.9
MS.gene43024.t1 AT5G49420 45.333 75 37 1 3 73 8 82 2.59e-12 64.3
MS.gene43024.t1 AT1G31140 30.476 105 68 2 1 100 1 105 2.61e-12 63.2
MS.gene43024.t1 AT5G38620 45.946 74 36 1 3 72 6 79 4.10e-12 63.9
MS.gene43024.t1 AT2G26320 45.902 61 33 0 1 61 17 77 9.49e-12 59.3
MS.gene43024.t1 AT5G04640 32.812 128 73 3 3 117 5 132 1.32e-11 62.4
MS.gene43024.t1 AT1G69540 40.278 72 42 1 1 71 1 72 1.55e-11 62.0
MS.gene43024.t1 AT1G69540 41.429 70 40 1 1 69 1 70 2.32e-11 61.6
MS.gene43024.t1 AT2G03060 29.379 177 85 6 1 150 1 164 2.96e-11 61.2
MS.gene43024.t1 AT2G03060 29.379 177 85 6 1 150 1 164 3.46e-11 61.2
MS.gene43024.t1 AT2G03060 29.379 177 85 6 1 150 1 164 3.46e-11 61.2
MS.gene43024.t1 AT2G03060 29.379 177 85 6 1 150 1 164 3.46e-11 61.2

Find 44 sgRNAs with CRISPR-Local

Find 45 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGCTCTCCTTCAAGAAATT+TGG 0.179978 8.1:-55902592 None:intergenic
GGAATAAGCCTTACTCTTTC+GGG 0.203927 8.1:+55902544 MS.gene43024:CDS
AGATTCATATGGGAAATTTA+AGG 0.261798 8.1:+55902791 MS.gene43024:CDS
GGGAATAAGCCTTACTCTTT+CGG 0.264231 8.1:+55902543 MS.gene43024:CDS
CGGTCGGTTTGTATTCTTCT+AGG 0.267533 8.1:-55902743 None:intergenic
ATATGGGAAATTTAAGGAAA+TGG 0.366214 8.1:+55902797 MS.gene43024:CDS
GCTATTGTTGTGTTCTCCCC+TGG 0.368488 8.1:+55902522 MS.gene43024:CDS
GAGGAATTGAAAGATTCATA+TGG 0.396821 8.1:+55902780 MS.gene43024:CDS
ACATTCTCTAAGCGTCGAAC+AGG 0.429261 8.1:+55902450 MS.gene43024:CDS
CTATTGTTGTGTTCTCCCCT+GGG 0.431123 8.1:+55902523 MS.gene43024:CDS
GTTACTTCTTGCAGAGAAAC+CGG 0.436314 8.1:+55902860 MS.gene43024:CDS
GTTGCATCCAAATTTCTTGA+AGG 0.449324 8.1:+55902585 MS.gene43024:CDS
TGATTCAGATCCTCTCTGTT+CGG 0.453934 8.1:-55902654 None:intergenic
AATGTAACCTGCCTTATGAT+AGG 0.459002 8.1:-55902432 None:intergenic
AACAAAGTCTCAAGAAAGAA+AGG 0.467261 8.1:+55902897 MS.gene43024:CDS
ATGAACTTGCCATCTTGTGC+GGG 0.468340 8.1:+55902490 MS.gene43024:CDS
AGGAATTGAAAGATTCATAT+GGG 0.485245 8.1:+55902781 MS.gene43024:CDS
CTTGGATGCCCGAAAGAGTA+AGG 0.491836 8.1:-55902552 None:intergenic
GTCGCAAAATTGCGATTGCA+AGG 0.497909 8.1:+55902400 MS.gene43024:CDS
AGGAGGCTGAAAATGAAGCT+AGG 0.515324 8.1:+55902706 MS.gene43024:CDS
AGCTTCCTATGCCATCATCT+AGG 0.527794 8.1:-55902617 None:intergenic
AAAGAGTAAGGCTTATTCCC+AGG 0.528202 8.1:-55902540 None:intergenic
TTCCTCAAGTTGAGTGAGAT+CGG 0.528972 8.1:-55902763 None:intergenic
AATGAACTTGCCATCTTGTG+CGG 0.538350 8.1:+55902489 MS.gene43024:CDS
ATGTAACCTGCCTTATGATA+GGG 0.543825 8.1:-55902431 None:intergenic
GGGTGAGAGACCCTATCATA+AGG 0.546640 8.1:+55902421 MS.gene43024:CDS
AATTTCTGCCCCGCACAAGA+TGG 0.555860 8.1:-55902499 None:intergenic
CTTGCAGAGAAACCGGTGGT+TGG 0.563786 8.1:+55902867 MS.gene43024:CDS
GGAGAGCTCAACCTAGATGA+TGG 0.566220 8.1:+55902606 MS.gene43024:CDS
GGAGGCTGAAAATGAAGCTA+GGG 0.567281 8.1:+55902707 MS.gene43024:CDS
GAGAGACCCTATCATAAGGC+AGG 0.574297 8.1:+55902425 MS.gene43024:CDS
AGATGTGCTAGCTGAACTAA+AGG 0.580033 8.1:+55902686 MS.gene43024:CDS
TCAAGTTGAGTGAGATCGGT+CGG 0.587343 8.1:-55902759 None:intergenic
GACCGATCTCACTCAACTTG+AGG 0.587596 8.1:+55902761 MS.gene43024:CDS
AAGAGTAAGGCTTATTCCCA+GGG 0.598555 8.1:-55902539 None:intergenic
GATGCAACATCATCAACACT+TGG 0.606572 8.1:-55902570 None:intergenic
TCGCAAAATTGCGATTGCAA+GGG 0.641127 8.1:+55902401 MS.gene43024:CDS
TGTGCTAGCTGAACTAAAGG+AGG 0.641632 8.1:+55902689 MS.gene43024:CDS
TCGAACAGGATTATTCAAGA+AGG 0.647981 8.1:+55902464 MS.gene43024:CDS
CTCAACCTAGATGATGGCAT+AGG 0.656307 8.1:+55902612 MS.gene43024:CDS
TGAACTTGCCATCTTGTGCG+GGG 0.674850 8.1:+55902491 MS.gene43024:CDS
ACTTCTTGCAGAGAAACCGG+TGG 0.709944 8.1:+55902863 MS.gene43024:CDS
TTCTGAAGTTCCGAACAGAG+AGG 0.730021 8.1:+55902644 MS.gene43024:CDS
AGAGTAAGGCTTATTCCCAG+GGG 0.760036 8.1:-55902538 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AGATTCATATGGGAAATTTA+AGG + chr8.1:55902791-55902810 MS.gene43024:CDS 25.0%
! AGGAATTGAAAGATTCATAT+GGG + chr8.1:55902781-55902800 MS.gene43024:CDS 25.0%
! ATATGGGAAATTTAAGGAAA+TGG + chr8.1:55902797-55902816 MS.gene43024:CDS 25.0%
AACAAAGTCTCAAGAAAGAA+AGG + chr8.1:55902897-55902916 MS.gene43024:CDS 30.0%
GAGGAATTGAAAGATTCATA+TGG + chr8.1:55902780-55902799 MS.gene43024:CDS 30.0%
AATGTAACCTGCCTTATGAT+AGG - chr8.1:55902435-55902454 None:intergenic 35.0%
ATGTAACCTGCCTTATGATA+GGG - chr8.1:55902434-55902453 None:intergenic 35.0%
GTTGCATCCAAATTTCTTGA+AGG + chr8.1:55902585-55902604 MS.gene43024:CDS 35.0%
TCGAACAGGATTATTCAAGA+AGG + chr8.1:55902464-55902483 MS.gene43024:CDS 35.0%
!!! TTGTTTTTTGTTCCAACCAC+CGG - chr8.1:55902882-55902901 None:intergenic 35.0%
AAAGAGTAAGGCTTATTCCC+AGG - chr8.1:55902543-55902562 None:intergenic 40.0%
AAGAGTAAGGCTTATTCCCA+GGG - chr8.1:55902542-55902561 None:intergenic 40.0%
AATGAACTTGCCATCTTGTG+CGG + chr8.1:55902489-55902508 MS.gene43024:CDS 40.0%
AGATGTGCTAGCTGAACTAA+AGG + chr8.1:55902686-55902705 MS.gene43024:CDS 40.0%
GAGCTCTCCTTCAAGAAATT+TGG - chr8.1:55902595-55902614 None:intergenic 40.0%
GATGCAACATCATCAACACT+TGG - chr8.1:55902573-55902592 None:intergenic 40.0%
GGAATAAGCCTTACTCTTTC+GGG + chr8.1:55902544-55902563 MS.gene43024:CDS 40.0%
GGGAATAAGCCTTACTCTTT+CGG + chr8.1:55902543-55902562 MS.gene43024:CDS 40.0%
GTTACTTCTTGCAGAGAAAC+CGG + chr8.1:55902860-55902879 MS.gene43024:CDS 40.0%
TCGCAAAATTGCGATTGCAA+GGG + chr8.1:55902401-55902420 MS.gene43024:CDS 40.0%
TGATTCAGATCCTCTCTGTT+CGG - chr8.1:55902657-55902676 None:intergenic 40.0%
!! TTCCTCAAGTTGAGTGAGAT+CGG - chr8.1:55902766-55902785 None:intergenic 40.0%
AGAGTAAGGCTTATTCCCAG+GGG - chr8.1:55902541-55902560 None:intergenic 45.0%
AGCTTCCTATGCCATCATCT+AGG - chr8.1:55902620-55902639 None:intergenic 45.0%
AGGAGGCTGAAAATGAAGCT+AGG + chr8.1:55902706-55902725 MS.gene43024:CDS 45.0%
ATGAACTTGCCATCTTGTGC+GGG + chr8.1:55902490-55902509 MS.gene43024:CDS 45.0%
CTATTGTTGTGTTCTCCCCT+GGG + chr8.1:55902523-55902542 MS.gene43024:CDS 45.0%
GGAGGCTGAAAATGAAGCTA+GGG + chr8.1:55902707-55902726 MS.gene43024:CDS 45.0%
GTCGCAAAATTGCGATTGCA+AGG + chr8.1:55902400-55902419 MS.gene43024:CDS 45.0%
TGTGCTAGCTGAACTAAAGG+AGG + chr8.1:55902689-55902708 MS.gene43024:CDS 45.0%
! CTCAACCTAGATGATGGCAT+AGG + chr8.1:55902612-55902631 MS.gene43024:CDS 45.0%
!! ACATTCTCTAAGCGTCGAAC+AGG + chr8.1:55902450-55902469 MS.gene43024:CDS 45.0%
!! CGGTCGGTTTGTATTCTTCT+AGG - chr8.1:55902746-55902765 None:intergenic 45.0%
!! TCAAGTTGAGTGAGATCGGT+CGG - chr8.1:55902762-55902781 None:intergenic 45.0%
!! TTCTGAAGTTCCGAACAGAG+AGG + chr8.1:55902644-55902663 MS.gene43024:CDS 45.0%
AATTTCTGCCCCGCACAAGA+TGG - chr8.1:55902502-55902521 None:intergenic 50.0%
ACTTCTTGCAGAGAAACCGG+TGG + chr8.1:55902863-55902882 MS.gene43024:CDS 50.0%
CTTGGATGCCCGAAAGAGTA+AGG - chr8.1:55902555-55902574 None:intergenic 50.0%
GACCGATCTCACTCAACTTG+AGG + chr8.1:55902761-55902780 MS.gene43024:CDS 50.0%
GAGAGACCCTATCATAAGGC+AGG + chr8.1:55902425-55902444 MS.gene43024:CDS 50.0%
GCTATTGTTGTGTTCTCCCC+TGG + chr8.1:55902522-55902541 MS.gene43024:CDS 50.0%
GGAGAGCTCAACCTAGATGA+TGG + chr8.1:55902606-55902625 MS.gene43024:CDS 50.0%
GGGTGAGAGACCCTATCATA+AGG + chr8.1:55902421-55902440 MS.gene43024:CDS 50.0%
TGAACTTGCCATCTTGTGCG+GGG + chr8.1:55902491-55902510 MS.gene43024:CDS 50.0%
CTTGCAGAGAAACCGGTGGT+TGG + chr8.1:55902867-55902886 MS.gene43024:CDS 55.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 55902393 55902938 55902393 ID=MS.gene43024
chr8.1 mRNA 55902393 55902938 55902393 ID=MS.gene43024.t1;Parent=MS.gene43024
chr8.1 exon 55902393 55902938 55902393 ID=MS.gene43024.t1.exon1;Parent=MS.gene43024.t1
chr8.1 CDS 55902393 55902938 55902393 ID=cds.MS.gene43024.t1;Parent=MS.gene43024.t1
Gene Sequence

>MS.gene43024

ATGGGTCGTCGCAAAATTGCGATTGCAAGGGTGAGAGACCCTATCATAAGGCAGGTTACATTCTCTAAGCGTCGAACAGGATTATTCAAGAAGGCAAATGAACTTGCCATCTTGTGCGGGGCAGAAATTGCTATTGTTGTGTTCTCCCCTGGGAATAAGCCTTACTCTTTCGGGCATCCAAGTGTTGATGATGTTGCATCCAAATTTCTTGAAGGAGAGCTCAACCTAGATGATGGCATAGGAAGCTCATCTTCTGAAGTTCCGAACAGAGAGGATCTGAATCAACAACTTGAAGATGTGCTAGCTGAACTAAAGGAGGCTGAAAATGAAGCTAGGGCACATGATGAGATCCTAGAAGAATACAAACCGACCGATCTCACTCAACTTGAGGAATTGAAAGATTCATATGGGAAATTTAAGGAAATGGTGAGATCACGTCTTCGTGATTTAGAAACAACTGAATCTATGTTACTTCTTGCAGAGAAACCGGTGGTTGGAACAAAAAACAAAGTCTCAAGAAAGAAAGGAAAACAACCAATGCTTTAG
Protein sequence

>MS.gene43024.t1

MGRRKIAIARVRDPIIRQVTFSKRRTGLFKKANELAILCGAEIAIVVFSPGNKPYSFGHPSVDDVASKFLEGELNLDDGIGSSSSEVPNREDLNQQLEDVLAELKEAENEARAHDEILEEYKPTDLTQLEELKDSYGKFKEMVRSRLRDLETTESMLLLAEKPVVGTKNKVSRKKGKQPML