AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene43028

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene43028.t1 MTR_8g051580 93.923 181 11 0 1 181 1 181 1.40e-123 346
MS.gene43028.t1 MTR_1g047550 59.429 175 71 0 1 175 1 175 1.96e-72 216
MS.gene43028.t1 MTR_8g046350 62.722 169 57 2 1 169 1 163 1.69e-68 206
MS.gene43028.t1 MTR_1g063160 56.000 175 77 0 1 175 1 175 3.25e-68 206
MS.gene43028.t1 MTR_1g054265 58.333 168 70 0 1 168 1 168 2.32e-66 201
MS.gene43028.t1 MTR_8g079502 57.831 166 70 0 1 166 1 166 1.68e-65 199
MS.gene43028.t1 MTR_4g131030 52.941 187 71 1 1 170 1 187 1.89e-64 197
MS.gene43028.t1 MTR_4g094632 39.881 168 81 5 1 164 1 152 1.22e-28 104
MS.gene43028.t1 MTR_3g080940 43.902 123 59 2 1 117 8 126 9.17e-25 95.9
MS.gene43028.t1 MTR_1g106070 46.535 101 52 1 2 100 9 109 2.16e-24 94.4
MS.gene43028.t1 MTR_3g052870 38.621 145 71 3 2 142 9 139 1.26e-23 93.2
MS.gene43028.t1 MTR_2g105290 43.269 104 57 1 1 104 11 112 1.58e-23 92.0
MS.gene43028.t1 MTR_5g045560 43.925 107 58 1 1 107 8 112 2.62e-23 92.8
MS.gene43028.t1 MTR_8g086290 40.777 103 59 1 2 104 12 112 4.25e-23 90.9
MS.gene43028.t1 MTR_1g105920 46.535 101 52 1 2 100 9 109 7.28e-23 91.7
MS.gene43028.t1 MTR_3g052920 57.971 69 29 0 2 70 9 77 7.47e-23 91.7
MS.gene43028.t1 MTR_1g108580 37.580 157 80 3 2 143 9 162 1.32e-22 90.9
MS.gene43028.t1 MTR_1g105910 40.361 166 66 7 2 166 9 142 5.06e-22 89.4
MS.gene43028.t1 MTR_4g094638 42.056 107 59 1 1 104 1 107 5.69e-22 87.8
MS.gene43028.t1 MTR_2g030740 57.971 69 29 0 2 70 9 77 9.91e-22 88.6
MS.gene43028.t1 MTR_3g030770 56.522 69 30 0 2 70 9 77 2.00e-21 87.8
MS.gene43028.t1 MTR_1g108510 56.522 69 30 0 2 70 9 77 2.29e-21 87.4
MS.gene43028.t1 MTR_8g043650 56.522 69 30 0 2 70 9 77 2.30e-21 87.8
MS.gene43028.t1 MTR_5g053390 35.897 156 84 3 2 143 9 162 2.52e-21 87.4
MS.gene43028.t1 MTR_1g012570 55.072 69 31 0 2 70 9 77 4.84e-21 87.0
MS.gene43028.t1 MTR_1g077360 50.633 79 39 0 2 80 9 87 6.23e-21 86.7
MS.gene43028.t1 MTR_2g093190 37.580 157 80 3 2 143 9 162 7.14e-21 86.3
MS.gene43028.t1 MTR_0121s0100 42.017 119 64 2 2 120 9 122 9.37e-21 83.6
MS.gene43028.t1 MTR_5g055100 45.918 98 40 1 2 99 9 93 1.01e-20 85.9
MS.gene43028.t1 MTR_7g028448 37.600 125 76 2 17 140 27 150 1.17e-20 84.3
MS.gene43028.t1 MTR_4g036915 37.600 125 76 2 17 140 27 150 1.17e-20 84.3
MS.gene43028.t1 MTR_1g075600 56.522 69 30 0 2 70 9 77 1.99e-20 85.1
MS.gene43028.t1 MTR_2g085280 34.146 164 92 4 2 151 9 170 3.33e-20 84.7
MS.gene43028.t1 MTR_2g085250 34.146 164 92 4 2 151 9 170 3.54e-20 84.7
MS.gene43028.t1 MTR_3g030780 50.725 69 34 0 2 70 9 77 1.38e-19 80.5
MS.gene43028.t1 MTR_0121s0080 53.521 71 33 0 2 72 9 79 1.98e-19 82.4
MS.gene43028.t1 MTR_1g105905 64.151 53 19 0 18 70 8 60 1.44e-18 80.1
MS.gene43028.t1 MTR_7g062350 58.333 60 25 0 13 72 32 91 2.14e-18 80.1
MS.gene43028.t1 MTR_2g017865 35.115 131 81 2 1 130 16 143 5.33e-18 79.3
MS.gene43028.t1 MTR_2g009890 52.174 69 33 0 1 69 1 69 1.03e-17 78.6
MS.gene43028.t1 MTR_4g127140 48.101 79 41 0 1 79 11 89 1.63e-17 76.3
MS.gene43028.t1 MTR_5g066180 46.377 69 37 0 1 69 1 69 1.90e-17 77.0
MS.gene43028.t1 MTR_1g053070 45.570 79 43 0 1 79 1 79 2.16e-17 77.4
MS.gene43028.t1 MTR_5g031000 50.725 69 34 0 1 69 1 69 2.81e-17 77.0
MS.gene43028.t1 MTR_5g031000 50.725 69 34 0 1 69 1 69 3.16e-17 76.6
MS.gene43028.t1 MTR_4g084740 34.225 187 105 8 1 175 1 181 4.54e-17 77.4
MS.gene43028.t1 MTR_0003s0590 50.725 69 34 0 1 69 1 69 5.67e-17 76.3
MS.gene43028.t1 MTR_3g113030 37.778 135 77 3 1 134 1 129 5.67e-17 75.9
MS.gene43028.t1 MTR_1g101970 42.667 75 43 0 1 75 1 75 7.43e-17 74.7
MS.gene43028.t1 MTR_3g067875 62.500 48 18 0 18 65 8 55 7.56e-17 71.6
MS.gene43028.t1 MTR_5g046790 46.479 71 35 1 1 71 1 68 1.15e-16 74.7
MS.gene43028.t1 MTR_5g066960 56.667 60 26 0 1 60 1 60 1.19e-16 70.9
MS.gene43028.t1 MTR_8g033270 44.000 75 42 0 1 75 1 75 1.74e-16 75.1
MS.gene43028.t1 MTR_8g087860 35.714 112 69 1 1 112 17 125 1.84e-16 74.7
MS.gene43028.t1 MTR_4g093970 37.857 140 71 3 1 132 27 158 1.98e-16 74.7
MS.gene43028.t1 MTR_8g033220 36.538 104 64 2 1 104 1 102 2.17e-16 74.3
MS.gene43028.t1 MTR_7g075870 46.377 69 37 0 1 69 1 69 2.35e-16 73.9
MS.gene43028.t1 MTR_1g108500 56.667 60 26 0 18 77 113 172 2.56e-16 75.5
MS.gene43028.t1 MTR_8g033220 36.538 104 64 2 1 104 1 102 3.12e-16 73.9
MS.gene43028.t1 MTR_3g452380 49.275 69 35 0 1 69 16 84 3.53e-16 73.9
MS.gene43028.t1 MTR_8g066260 46.479 71 35 1 1 71 1 68 8.85e-16 72.8
MS.gene43028.t1 MTR_3g005530 44.928 69 38 0 1 69 1 69 9.67e-16 72.4
MS.gene43028.t1 MTR_4g109830 46.479 71 35 1 1 71 1 68 1.57e-15 72.0
MS.gene43028.t1 MTR_2g461710 50.877 57 28 0 1 57 1 57 1.62e-15 67.8
MS.gene43028.t1 MTR_7g016600 50.820 61 30 0 1 61 1 61 1.76e-15 72.4
MS.gene43028.t1 MTR_5g021270 48.387 62 32 0 1 62 1 62 1.85e-15 72.0
MS.gene43028.t1 MTR_5g021270 48.387 62 32 0 1 62 1 62 1.85e-15 72.0
MS.gene43028.t1 MTR_4g102530 46.377 69 37 0 1 69 1 69 2.40e-15 71.2
MS.gene43028.t1 MTR_7g075870 47.143 70 36 1 1 69 1 70 2.95e-15 70.9
MS.gene43028.t1 MTR_5g046870 52.632 57 27 0 1 57 1 57 3.94e-15 68.2
MS.gene43028.t1 MTR_6g464720 31.655 139 85 4 1 134 1 134 4.24e-15 71.2
MS.gene43028.t1 MTR_8g097090 35.119 168 92 6 1 157 1 162 4.89e-15 70.9
MS.gene43028.t1 MTR_7g016630 41.429 70 40 1 1 69 1 70 6.26e-15 70.9
MS.gene43028.t1 MTR_3g084980 52.459 61 29 0 1 61 1 61 7.79e-15 70.5
MS.gene43028.t1 MTR_6g015975 50.794 63 30 1 1 62 1 63 1.16e-14 70.1
MS.gene43028.t1 MTR_5g032520 44.615 65 36 0 1 65 1 65 1.31e-14 69.3
MS.gene43028.t1 MTR_4g093030 50.794 63 31 0 1 63 1 63 1.36e-14 68.2
MS.gene43028.t1 MTR_4g036050 54.545 55 25 0 1 55 1 55 1.38e-14 68.6
MS.gene43028.t1 MTR_4g036050 54.545 55 25 0 1 55 1 55 1.40e-14 68.9
MS.gene43028.t1 MTR_4g036050 54.545 55 25 0 1 55 1 55 1.51e-14 68.2
MS.gene43028.t1 MTR_4g036050 54.545 55 25 0 1 55 1 55 1.58e-14 68.6
MS.gene43028.t1 MTR_5g032150 44.615 65 36 0 1 65 1 65 1.66e-14 69.3
MS.gene43028.t1 MTR_3g067910 50.943 53 26 0 18 70 6 58 2.12e-14 66.2
MS.gene43028.t1 MTR_4g109810 46.774 62 33 0 1 62 1 62 2.92e-14 68.9
MS.gene43028.t1 MTR_7g075850 50.820 61 30 0 1 61 1 61 3.53e-14 68.6
MS.gene43028.t1 MTR_1g038300 43.662 71 38 1 1 69 1 71 3.67e-14 68.6
MS.gene43028.t1 MTR_3g102570 35.526 152 77 9 1 151 1 132 1.12e-13 68.2
MS.gene43028.t1 MTR_1g029670 41.935 62 36 0 1 62 1 62 3.16e-13 65.1
MS.gene43028.t1 MTR_3g088615 41.935 62 36 0 1 62 1 62 4.39e-13 64.7
MS.gene43028.t1 MTR_1g041615 66.667 42 14 0 17 58 21 62 5.64e-13 63.2
MS.gene43028.t1 MTR_3g067870 56.250 48 21 0 18 65 92 139 7.19e-13 63.5
MS.gene43028.t1 MTR_5g041650 29.762 168 87 4 1 140 38 202 8.74e-13 65.9
MS.gene43028.t1 MTR_3g437790 34.459 148 58 5 19 140 30 164 1.63e-12 63.2
MS.gene43028.t1 MTR_4g108720 28.743 167 88 4 1 139 1 164 1.00e-11 62.8
MS.gene43028.t1 MTR_3g109930 43.860 57 32 0 17 73 17 73 3.57e-11 59.3
MS.gene43028.t1 MTR_8g022970 48.148 54 28 0 20 73 36 89 4.04e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene43028.t1 AT2G34440 42.197 173 88 4 1 162 1 172 7.79e-33 115
MS.gene43028.t1 AT2G24840 38.415 164 86 4 1 150 62 224 6.31e-31 113
MS.gene43028.t1 AT3G66656 40.341 176 88 4 1 160 1 175 1.78e-30 109
MS.gene43028.t1 AT5G60440 44.172 163 64 6 2 143 7 163 5.95e-28 106
MS.gene43028.t1 AT1G01530 46.903 113 57 3 1 112 6 116 1.71e-23 93.6
MS.gene43028.t1 AT1G47760 55.882 68 30 0 1 68 1 68 6.84e-22 87.8
MS.gene43028.t1 AT1G65360 55.072 69 31 0 1 69 6 74 1.93e-20 85.1
MS.gene43028.t1 AT4G36590 57.353 68 29 0 2 69 7 74 2.33e-20 85.5
MS.gene43028.t1 AT3G57230 47.674 86 38 1 1 86 1 79 2.33e-20 82.8
MS.gene43028.t1 AT3G57230 47.674 86 38 1 1 86 1 79 6.53e-20 84.0
MS.gene43028.t1 AT3G57230 47.674 86 38 1 1 86 1 79 6.53e-20 84.0
MS.gene43028.t1 AT2G22630 53.623 69 32 0 1 69 1 69 4.87e-19 81.3
MS.gene43028.t1 AT2G22630 53.623 69 32 0 1 69 1 69 4.87e-19 81.3
MS.gene43028.t1 AT4G37940 53.623 69 32 0 1 69 1 69 7.77e-19 80.9
MS.gene43028.t1 AT4G37940 53.623 69 32 0 1 69 1 69 1.09e-18 80.1
MS.gene43028.t1 AT3G61120 44.872 78 43 0 1 78 1 78 1.96e-18 80.1
MS.gene43028.t1 AT4G37940 53.623 69 32 0 1 69 1 69 2.13e-18 78.6
MS.gene43028.t1 AT1G29962 48.611 72 37 0 2 73 8 79 2.32e-18 78.6
MS.gene43028.t1 AT3G04100 36.691 139 65 3 2 135 14 134 4.58e-18 78.6
MS.gene43028.t1 AT1G28460 47.222 72 38 0 2 73 8 79 8.88e-18 77.0
MS.gene43028.t1 AT2G45660 33.036 112 72 1 1 112 1 109 3.26e-17 75.1
MS.gene43028.t1 AT1G71692 42.553 94 50 2 1 93 1 91 3.48e-17 76.3
MS.gene43028.t1 AT2G03710 35.088 171 89 6 1 158 1 162 4.67e-17 75.5
MS.gene43028.t1 AT5G13790 40.741 108 53 2 1 106 1 99 7.62e-17 76.3
MS.gene43028.t1 AT4G24540 35.088 114 70 1 1 110 1 114 9.56e-17 75.1
MS.gene43028.t1 AT5G15800 34.320 169 93 4 1 158 1 162 9.85e-17 75.9
MS.gene43028.t1 AT2G45650 46.377 69 37 0 1 69 1 69 1.02e-16 75.5
MS.gene43028.t1 AT2G45660 45.714 70 38 0 1 70 1 70 1.16e-16 74.7
MS.gene43028.t1 AT5G15800 34.320 169 93 4 1 158 1 162 1.25e-16 75.5
MS.gene43028.t1 AT4G22950 47.826 69 36 0 1 69 1 69 1.48e-16 73.6
MS.gene43028.t1 AT1G72350 53.623 69 30 1 2 70 43 109 1.53e-16 74.7
MS.gene43028.t1 AT3G57390 47.826 69 36 0 1 69 1 69 1.57e-16 74.7
MS.gene43028.t1 AT5G13790 40.367 109 55 3 1 106 1 102 1.63e-16 75.5
MS.gene43028.t1 AT1G69120 49.296 71 33 1 1 71 1 68 1.81e-16 74.7
MS.gene43028.t1 AT4G09960 33.929 112 71 1 1 112 2 110 2.21e-16 74.3
MS.gene43028.t1 AT4G09960 33.929 112 71 1 1 112 1 109 2.28e-16 73.9
MS.gene43028.t1 AT4G09960 33.929 112 71 1 1 112 1 109 2.44e-16 74.3
MS.gene43028.t1 AT2G03710 35.088 171 89 6 1 158 1 162 2.56e-16 74.7
MS.gene43028.t1 AT4G09960 33.929 112 71 1 1 112 11 119 2.84e-16 74.3
MS.gene43028.t1 AT2G03710 35.088 171 89 6 1 158 1 162 2.93e-16 74.3
MS.gene43028.t1 AT1G26310 30.667 150 102 1 1 150 1 148 3.09e-16 74.3
MS.gene43028.t1 AT2G22540 49.231 65 33 0 1 65 1 65 3.25e-16 73.9
MS.gene43028.t1 AT2G22540 49.231 65 33 0 1 65 1 65 3.25e-16 73.9
MS.gene43028.t1 AT3G57390 47.826 69 36 0 1 69 1 69 3.26e-16 74.3
MS.gene43028.t1 AT4G09960 33.929 112 71 1 1 112 27 135 3.54e-16 74.3
MS.gene43028.t1 AT3G58780 31.169 154 101 2 1 154 16 164 3.86e-16 73.9
MS.gene43028.t1 AT3G58780 31.169 154 101 2 1 154 22 170 4.19e-16 73.9
MS.gene43028.t1 AT1G69120 49.296 71 33 1 1 71 1 68 4.71e-16 73.9
MS.gene43028.t1 AT1G24260 35.503 169 92 5 1 157 1 164 5.31e-16 73.6
MS.gene43028.t1 AT2G14210 54.098 61 28 0 1 61 1 61 5.52e-16 73.6
MS.gene43028.t1 AT4G09960 33.929 112 71 1 1 112 96 204 5.97e-16 74.3
MS.gene43028.t1 AT5G60910 46.479 71 35 1 1 71 1 68 6.59e-16 73.2
MS.gene43028.t1 AT3G02310 34.857 175 96 5 1 164 1 168 6.68e-16 72.4
MS.gene43028.t1 AT2G14210 54.098 61 28 0 1 61 1 61 7.02e-16 73.2
MS.gene43028.t1 AT3G58780 34.821 112 70 1 1 112 16 124 7.22e-16 73.9
MS.gene43028.t1 AT1G22130 50.704 71 34 1 1 70 1 71 7.97e-16 74.3
MS.gene43028.t1 AT3G30260 52.459 61 29 0 1 61 1 61 8.45e-16 73.2
MS.gene43028.t1 AT4G22950 47.826 69 36 0 1 69 1 69 1.00e-15 72.4
MS.gene43028.t1 AT4G22950 47.826 69 36 0 1 69 1 69 1.00e-15 72.4
MS.gene43028.t1 AT3G54340 50.000 62 31 0 1 62 1 62 1.86e-15 72.0
MS.gene43028.t1 AT4G18960 34.615 130 81 2 2 130 18 144 2.01e-15 72.0
MS.gene43028.t1 AT3G02310 34.857 175 96 6 1 164 1 168 2.07e-15 72.0
MS.gene43028.t1 AT1G77980 48.101 79 36 2 1 78 1 75 2.13e-15 73.2
MS.gene43028.t1 AT4G11880 35.897 117 50 2 1 116 1 93 2.19e-15 70.9
MS.gene43028.t1 AT4G11880 35.897 117 50 2 1 116 1 93 2.19e-15 70.9
MS.gene43028.t1 AT1G24260 35.882 170 89 7 1 157 1 163 2.29e-15 72.0
MS.gene43028.t1 AT2G42830 46.377 69 37 0 1 69 16 84 2.64e-15 71.6
MS.gene43028.t1 AT2G42830 33.945 109 69 1 1 109 16 121 2.65e-15 71.6
MS.gene43028.t1 AT1G46408 50.633 79 33 3 1 73 1 79 2.72e-15 72.0
MS.gene43028.t1 AT5G65070 35.115 131 79 3 1 127 1 129 3.51e-15 69.3
MS.gene43028.t1 AT5G51860 43.662 71 40 0 1 71 1 71 5.37e-15 70.1
MS.gene43028.t1 AT5G51860 43.662 71 40 0 1 71 1 71 6.42e-15 70.1
MS.gene43028.t1 AT4G11880 35.897 117 50 2 1 116 1 93 7.50e-15 70.1
MS.gene43028.t1 AT4G11880 35.897 117 50 2 1 116 1 93 7.50e-15 70.1
MS.gene43028.t1 AT5G10140 52.632 57 27 0 1 57 1 57 9.53e-15 68.6
MS.gene43028.t1 AT5G65070 35.115 131 79 3 1 127 1 129 1.02e-14 69.3
MS.gene43028.t1 AT5G10140 52.632 57 27 0 1 57 1 57 1.17e-14 68.9
MS.gene43028.t1 AT1G24260 41.935 93 49 1 1 93 1 88 1.31e-14 69.7
MS.gene43028.t1 AT5G65070 43.590 78 41 2 1 76 1 77 1.34e-14 69.7
MS.gene43028.t1 AT5G10140 52.632 57 27 0 1 57 1 57 1.49e-14 68.9
MS.gene43028.t1 AT5G51870 42.029 69 40 0 1 69 1 69 1.58e-14 68.9
MS.gene43028.t1 AT5G10140 51.724 58 28 0 1 58 1 58 2.05e-14 68.2
MS.gene43028.t1 AT3G58780 39.535 86 39 1 1 73 16 101 2.37e-14 68.9
MS.gene43028.t1 AT2G22540 50.877 57 28 0 1 57 1 57 2.53e-14 68.9
MS.gene43028.t1 AT5G51870 42.029 69 40 0 1 69 1 69 2.75e-14 68.6
MS.gene43028.t1 AT1G28450 43.056 72 41 0 2 73 8 79 2.82e-14 67.8
MS.gene43028.t1 AT5G51870 42.029 69 40 0 1 69 1 69 2.99e-14 67.4
MS.gene43028.t1 AT5G51870 42.029 69 40 0 1 69 11 79 3.77e-14 68.2
MS.gene43028.t1 AT3G58780 50.820 61 30 0 1 61 16 76 4.36e-14 68.9
MS.gene43028.t1 AT5G20240 47.619 63 33 0 1 63 1 63 4.49e-14 66.6
MS.gene43028.t1 AT5G51870 42.029 69 40 0 1 69 24 92 4.62e-14 67.4
MS.gene43028.t1 AT1G18750 28.977 176 84 4 1 138 1 173 4.68e-14 69.3
MS.gene43028.t1 AT1G18750 28.977 176 84 4 1 138 1 173 4.88e-14 69.3
MS.gene43028.t1 AT5G65070 42.857 70 39 1 1 69 1 70 6.72e-14 67.8
MS.gene43028.t1 AT5G20240 47.619 63 33 0 1 63 1 63 7.60e-14 67.0
MS.gene43028.t1 AT4G37435 28.249 177 94 4 1 150 1 171 9.08e-14 66.6
MS.gene43028.t1 AT5G49490 41.176 102 45 2 3 100 46 136 1.04e-13 67.8
MS.gene43028.t1 AT5G23260 56.140 57 25 0 1 57 17 73 1.39e-13 67.4
MS.gene43028.t1 AT5G23260 56.140 57 25 0 1 57 17 73 1.42e-13 67.4
MS.gene43028.t1 AT5G23260 56.140 57 25 0 1 57 1 57 1.43e-13 67.0
MS.gene43028.t1 AT5G65070 48.276 58 30 0 1 58 1 58 1.45e-13 66.6
MS.gene43028.t1 AT5G23260 36.129 155 85 6 1 149 1 147 1.66e-13 66.6
MS.gene43028.t1 AT5G65050 52.727 55 26 0 1 55 1 55 1.88e-13 65.5
MS.gene43028.t1 AT1G17310 57.407 54 21 1 17 70 63 114 2.26e-13 66.2
MS.gene43028.t1 AT5G62165 39.130 69 42 0 1 69 1 69 2.37e-13 64.7
MS.gene43028.t1 AT5G62165 39.130 69 42 0 1 69 1 69 2.37e-13 64.7
MS.gene43028.t1 AT5G62165 39.130 69 42 0 1 69 1 69 2.37e-13 64.7
MS.gene43028.t1 AT1G17310 57.407 54 21 1 17 70 74 125 2.87e-13 65.9
MS.gene43028.t1 AT5G65080 44.286 70 38 1 1 69 8 77 3.18e-13 65.1
MS.gene43028.t1 AT5G65060 54.545 55 25 0 1 55 1 55 3.79e-13 65.1
MS.gene43028.t1 AT5G65060 54.545 55 25 0 1 55 1 55 4.33e-13 65.1
MS.gene43028.t1 AT5G62165 30.693 101 59 1 1 90 1 101 4.45e-13 62.8
MS.gene43028.t1 AT5G65060 54.545 55 25 0 1 55 1 55 5.03e-13 64.7
MS.gene43028.t1 AT5G62165 39.130 69 42 0 1 69 1 69 5.09e-13 63.9
MS.gene43028.t1 AT5G62165 39.130 69 42 0 1 69 1 69 5.09e-13 63.9
MS.gene43028.t1 AT5G62165 39.130 69 42 0 1 69 1 69 5.09e-13 63.9
MS.gene43028.t1 AT5G62165 39.130 69 42 0 1 69 1 69 5.09e-13 63.9
MS.gene43028.t1 AT5G62165 39.130 69 42 0 1 69 1 69 5.09e-13 63.9
MS.gene43028.t1 AT5G62165 39.130 69 42 0 1 69 1 69 5.40e-13 65.1
MS.gene43028.t1 AT5G62165 39.130 69 42 0 1 69 1 69 5.40e-13 65.1
MS.gene43028.t1 AT5G62165 39.130 69 42 0 1 69 1 69 5.40e-13 65.1
MS.gene43028.t1 AT1G77950 40.845 71 41 1 1 70 1 71 5.63e-13 65.5
MS.gene43028.t1 AT1G77950 40.845 71 41 1 1 70 1 71 5.63e-13 65.5
MS.gene43028.t1 AT1G77950 40.845 71 41 1 1 70 1 71 5.63e-13 65.5
MS.gene43028.t1 AT1G77950 40.845 71 41 1 1 70 1 71 5.63e-13 65.5
MS.gene43028.t1 AT5G62165 39.130 69 42 0 1 69 1 69 5.66e-13 64.7
MS.gene43028.t1 AT5G62165 39.130 69 42 0 1 69 1 69 5.66e-13 64.7
MS.gene43028.t1 AT5G65050 52.727 55 26 0 1 55 1 55 6.54e-13 64.3
MS.gene43028.t1 AT5G65050 52.727 55 26 0 1 55 1 55 7.77e-13 63.9
MS.gene43028.t1 AT5G65050 52.727 55 26 0 1 55 1 55 7.94e-13 63.9
MS.gene43028.t1 AT1G18750 43.662 71 38 1 1 69 1 71 9.31e-13 65.9
MS.gene43028.t1 AT1G60920 43.421 76 38 2 3 73 5 80 1.67e-12 63.2
MS.gene43028.t1 AT5G65080 48.214 56 29 0 1 56 8 63 1.68e-12 63.5
MS.gene43028.t1 AT5G49420 46.753 77 33 3 3 73 8 82 3.75e-12 63.9
MS.gene43028.t1 AT1G31140 30.476 105 68 2 1 100 1 105 4.90e-12 62.4
MS.gene43028.t1 AT5G38620 47.368 76 32 3 3 72 6 79 5.76e-12 63.5
MS.gene43028.t1 AT2G26320 45.902 61 33 0 1 61 17 77 1.82e-11 58.5
MS.gene43028.t1 AT5G04640 41.333 75 40 1 3 73 5 79 4.80e-11 60.5
MS.gene43028.t1 AT2G03060 33.083 133 59 4 1 106 1 130 5.16e-11 60.8
MS.gene43028.t1 AT2G03060 33.083 133 59 4 1 106 1 130 6.33e-11 60.5
MS.gene43028.t1 AT2G03060 33.083 133 59 4 1 106 1 130 6.33e-11 60.5
MS.gene43028.t1 AT2G03060 33.083 133 59 4 1 106 1 130 6.33e-11 60.5

Find 43 sgRNAs with CRISPR-Local

Find 44 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGCTCTCCTTCAAGAAATT+TGG 0.179978 8.1:-55981126 None:intergenic
CAGTTGGTTTGTATTCTTCT+AGG 0.270957 8.1:-55981277 None:intergenic
TGATTCAGATCCTCTCTGTT+TGG 0.338080 8.1:-55981188 None:intergenic
GGGAATAAGCCTTACTCATT+CGG 0.356415 8.1:+55981077 MS.gene43028:CDS
GCTATTGTTGTGTTCTCCCC+TGG 0.368488 8.1:+55981056 MS.gene43028:CDS
AGGATTTGAAAGATTCATAT+CGG 0.405934 8.1:+55981315 MS.gene43028:CDS
GGAATAAGCCTTACTCATTC+GGG 0.418546 8.1:+55981078 MS.gene43028:CDS
ACATTCTCTAAGCGTCGAAC+AGG 0.429261 8.1:+55980984 MS.gene43028:CDS
CTATTGTTGTGTTCTCCCCT+GGG 0.431123 8.1:+55981057 MS.gene43028:CDS
GTTACTTCTTGCAGAGAAAC+CGG 0.436314 8.1:+55981394 MS.gene43028:CDS
ATATCGGAAATTGAAGGAAA+TGG 0.440694 8.1:+55981331 MS.gene43028:CDS
GTTGCATCCAAATTTCTTGA+AGG 0.449324 8.1:+55981119 MS.gene43028:CDS
AATGTAACCTGCCTTATGAT+AGG 0.459002 8.1:-55980966 None:intergenic
AACAAAGTCGCAAGAAAGAA+AGG 0.460568 8.1:+55981431 MS.gene43028:CDS
ATGAACTTGCCATCTTGTGC+GGG 0.468340 8.1:+55981024 MS.gene43028:CDS
CTTGGGTGCCCGAATGAGTA+AGG 0.483546 8.1:-55981086 None:intergenic
TCAAGTTGAGTGAGTTCAGT+TGG 0.504549 8.1:-55981293 None:intergenic
AATGAGTAAGGCTTATTCCC+AGG 0.515959 8.1:-55981074 None:intergenic
AGCTTCCTATGCCATCATCT+AGG 0.527794 8.1:-55981151 None:intergenic
AATGAACTTGCCATCTTGTG+CGG 0.538350 8.1:+55981023 MS.gene43028:CDS
AACTGAACTCACTCAACTTG+AGG 0.538837 8.1:+55981295 MS.gene43028:CDS
ATGTAACCTGCCTTATGATA+GGG 0.543825 8.1:-55980965 None:intergenic
GTCGCAAAATTGCGATTGTG+AGG 0.548876 8.1:+55980934 MS.gene43028:CDS
GATGCAACATCATCAACACT+TGG 0.549337 8.1:-55981104 None:intergenic
AATTTCTGCCCCGCACAAGA+TGG 0.555860 8.1:-55981033 None:intergenic
GGGTGAGAGACCCTATCATA+AGG 0.562652 8.1:+55980955 MS.gene43028:CDS
CTTGCAGAGAAACCGGTGGT+TGG 0.563786 8.1:+55981401 MS.gene43028:CDS
GGAGAGCTCAACCTAGATGA+TGG 0.566220 8.1:+55981140 MS.gene43028:CDS
GAGAGACCCTATCATAAGGC+AGG 0.574297 8.1:+55980959 MS.gene43028:CDS
ATGAGTAAGGCTTATTCCCA+GGG 0.586047 8.1:-55981073 None:intergenic
GGAGGCTGAAAATGAAGCAA+GGG 0.606305 8.1:+55981241 MS.gene43028:CDS
AGATGTGCTAGCTCAACTAA+AGG 0.611567 8.1:+55981220 MS.gene43028:CDS
AGGAGGCTGAAAATGAAGCA+AGG 0.618287 8.1:+55981240 MS.gene43028:CDS
AGATTCATATCGGAAATTGA+AGG 0.637344 8.1:+55981325 MS.gene43028:CDS
TCGCAAAATTGCGATTGTGA+GGG 0.641127 8.1:+55980935 MS.gene43028:CDS
TGTGCTAGCTCAACTAAAGG+AGG 0.641632 8.1:+55981223 MS.gene43028:CDS
TCGAACAGGATTATTCAAGA+AGG 0.647981 8.1:+55980998 MS.gene43028:CDS
CTCAACCTAGATGATGGCAT+AGG 0.656307 8.1:+55981146 MS.gene43028:CDS
ATGCAACATCATCAACACTT+GGG 0.663273 8.1:-55981103 None:intergenic
TGAACTTGCCATCTTGTGCG+GGG 0.674850 8.1:+55981025 MS.gene43028:CDS
TTCTGAAGTTCCAAACAGAG+AGG 0.695196 8.1:+55981178 MS.gene43028:CDS
ACTTCTTGCAGAGAAACCGG+TGG 0.709944 8.1:+55981397 MS.gene43028:CDS
TGAGTAAGGCTTATTCCCAG+GGG 0.760036 8.1:-55981072 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AGGATTTGAAAGATTCATAT+CGG + chr8.1:55981315-55981334 MS.gene43028:CDS 25.0%
AGATTCATATCGGAAATTGA+AGG + chr8.1:55981325-55981344 MS.gene43028:CDS 30.0%
ATATCGGAAATTGAAGGAAA+TGG + chr8.1:55981331-55981350 MS.gene43028:CDS 30.0%
AACAAAGTCGCAAGAAAGAA+AGG + chr8.1:55981431-55981450 MS.gene43028:CDS 35.0%
AATGTAACCTGCCTTATGAT+AGG - chr8.1:55980969-55980988 None:intergenic 35.0%
ATGCAACATCATCAACACTT+GGG - chr8.1:55981106-55981125 None:intergenic 35.0%
ATGTAACCTGCCTTATGATA+GGG - chr8.1:55980968-55980987 None:intergenic 35.0%
GTTGCATCCAAATTTCTTGA+AGG + chr8.1:55981119-55981138 MS.gene43028:CDS 35.0%
TCGAACAGGATTATTCAAGA+AGG + chr8.1:55980998-55981017 MS.gene43028:CDS 35.0%
!! CAGTTGGTTTGTATTCTTCT+AGG - chr8.1:55981280-55981299 None:intergenic 35.0%
!!! TTGTTTTTTGTTCCAACCAC+CGG - chr8.1:55981416-55981435 None:intergenic 35.0%
AACTGAACTCACTCAACTTG+AGG + chr8.1:55981295-55981314 MS.gene43028:CDS 40.0%
AATGAACTTGCCATCTTGTG+CGG + chr8.1:55981023-55981042 MS.gene43028:CDS 40.0%
AATGAGTAAGGCTTATTCCC+AGG - chr8.1:55981077-55981096 None:intergenic 40.0%
AGATGTGCTAGCTCAACTAA+AGG + chr8.1:55981220-55981239 MS.gene43028:CDS 40.0%
ATGAGTAAGGCTTATTCCCA+GGG - chr8.1:55981076-55981095 None:intergenic 40.0%
GAGCTCTCCTTCAAGAAATT+TGG - chr8.1:55981129-55981148 None:intergenic 40.0%
GATGCAACATCATCAACACT+TGG - chr8.1:55981107-55981126 None:intergenic 40.0%
GGAATAAGCCTTACTCATTC+GGG + chr8.1:55981078-55981097 MS.gene43028:CDS 40.0%
GGGAATAAGCCTTACTCATT+CGG + chr8.1:55981077-55981096 MS.gene43028:CDS 40.0%
GTTACTTCTTGCAGAGAAAC+CGG + chr8.1:55981394-55981413 MS.gene43028:CDS 40.0%
TCGCAAAATTGCGATTGTGA+GGG + chr8.1:55980935-55980954 MS.gene43028:CDS 40.0%
TGATTCAGATCCTCTCTGTT+TGG - chr8.1:55981191-55981210 None:intergenic 40.0%
!! TCAAGTTGAGTGAGTTCAGT+TGG - chr8.1:55981296-55981315 None:intergenic 40.0%
!! TTCTGAAGTTCCAAACAGAG+AGG + chr8.1:55981178-55981197 MS.gene43028:CDS 40.0%
AGCTTCCTATGCCATCATCT+AGG - chr8.1:55981154-55981173 None:intergenic 45.0%
AGGAGGCTGAAAATGAAGCA+AGG + chr8.1:55981240-55981259 MS.gene43028:CDS 45.0%
ATGAACTTGCCATCTTGTGC+GGG + chr8.1:55981024-55981043 MS.gene43028:CDS 45.0%
CTATTGTTGTGTTCTCCCCT+GGG + chr8.1:55981057-55981076 MS.gene43028:CDS 45.0%
GGAGGCTGAAAATGAAGCAA+GGG + chr8.1:55981241-55981260 MS.gene43028:CDS 45.0%
GTCGCAAAATTGCGATTGTG+AGG + chr8.1:55980934-55980953 MS.gene43028:CDS 45.0%
TGAGTAAGGCTTATTCCCAG+GGG - chr8.1:55981075-55981094 None:intergenic 45.0%
TGTGCTAGCTCAACTAAAGG+AGG + chr8.1:55981223-55981242 MS.gene43028:CDS 45.0%
! CTCAACCTAGATGATGGCAT+AGG + chr8.1:55981146-55981165 MS.gene43028:CDS 45.0%
!! ACATTCTCTAAGCGTCGAAC+AGG + chr8.1:55980984-55981003 MS.gene43028:CDS 45.0%
AATTTCTGCCCCGCACAAGA+TGG - chr8.1:55981036-55981055 None:intergenic 50.0%
ACTTCTTGCAGAGAAACCGG+TGG + chr8.1:55981397-55981416 MS.gene43028:CDS 50.0%
GAGAGACCCTATCATAAGGC+AGG + chr8.1:55980959-55980978 MS.gene43028:CDS 50.0%
GCTATTGTTGTGTTCTCCCC+TGG + chr8.1:55981056-55981075 MS.gene43028:CDS 50.0%
GGAGAGCTCAACCTAGATGA+TGG + chr8.1:55981140-55981159 MS.gene43028:CDS 50.0%
GGGTGAGAGACCCTATCATA+AGG + chr8.1:55980955-55980974 MS.gene43028:CDS 50.0%
TGAACTTGCCATCTTGTGCG+GGG + chr8.1:55981025-55981044 MS.gene43028:CDS 50.0%
CTTGCAGAGAAACCGGTGGT+TGG + chr8.1:55981401-55981420 MS.gene43028:CDS 55.0%
CTTGGGTGCCCGAATGAGTA+AGG - chr8.1:55981089-55981108 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 55980927 55981472 55980927 ID=MS.gene43028
chr8.1 mRNA 55980927 55981472 55980927 ID=MS.gene43028.t1;Parent=MS.gene43028
chr8.1 exon 55980927 55981472 55980927 ID=MS.gene43028.t1.exon1;Parent=MS.gene43028.t1
chr8.1 CDS 55980927 55981472 55980927 ID=cds.MS.gene43028.t1;Parent=MS.gene43028.t1
Gene Sequence

>MS.gene43028

ATGGGTCGTCGCAAAATTGCGATTGTGAGGGTGAGAGACCCTATCATAAGGCAGGTTACATTCTCTAAGCGTCGAACAGGATTATTCAAGAAGGCAAATGAACTTGCCATCTTGTGCGGGGCAGAAATTGCTATTGTTGTGTTCTCCCCTGGGAATAAGCCTTACTCATTCGGGCACCCAAGTGTTGATGATGTTGCATCCAAATTTCTTGAAGGAGAGCTCAACCTAGATGATGGCATAGGAAGCTCATCTTCTGAAGTTCCAAACAGAGAGGATCTGAATCAACAACTTGAAGATGTGCTAGCTCAACTAAAGGAGGCTGAAAATGAAGCAAGGGCACATGATGAGATCCTAGAAGAATACAAACCAACTGAACTCACTCAACTTGAGGATTTGAAAGATTCATATCGGAAATTGAAGGAAATGGTGAGATCACGTCTTAGTGATTTAGAAACAACTGAATCTATGTTACTTCTTGCAGAGAAACCGGTGGTTGGAACAAAAAACAAAGTCGCAAGAAAGAAAGGAAAACAACCAATGCTTTAG
Protein sequence

>MS.gene43028.t1

MGRRKIAIVRVRDPIIRQVTFSKRRTGLFKKANELAILCGAEIAIVVFSPGNKPYSFGHPSVDDVASKFLEGELNLDDGIGSSSSEVPNREDLNQQLEDVLAQLKEAENEARAHDEILEEYKPTELTQLEDLKDSYRKLKEMVRSRLSDLETTESMLLLAEKPVVGTKNKVARKKGKQPML