AlfalfaGEDB | MS.gene43028

M. sativa cultivar XinJiangDaYe / MS.gene43028

KEGG: -
GO: GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005515 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043565 GO:0044212 GO:0045893 GO:0045935 GO:0045944 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene43028.t1	XP_003628271.1	93.9	181	11	0	1	181	1	181	7.90E-85	323.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene43028.t1	O64703	39.9	173	92	3	1	162	1	172	5.6e-23	109.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene43028.t1	G7L988	93.9	181	11	0	1	181	1	181	5.7e-85	323.2

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene43028.t1	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene43028.t1	MTR_8g051580	93.923	181	11	0	1	181	1	181	1.40e-123	346
MS.gene43028.t1	MTR_1g047550	59.429	175	71	0	1	175	1	175	1.96e-72	216
MS.gene43028.t1	MTR_8g046350	62.722	169	57	2	1	169	1	163	1.69e-68	206
MS.gene43028.t1	MTR_1g063160	56.000	175	77	0	1	175	1	175	3.25e-68	206
MS.gene43028.t1	MTR_1g054265	58.333	168	70	0	1	168	1	168	2.32e-66	201
MS.gene43028.t1	MTR_8g079502	57.831	166	70	0	1	166	1	166	1.68e-65	199
MS.gene43028.t1	MTR_4g131030	52.941	187	71	1	1	170	1	187	1.89e-64	197
MS.gene43028.t1	MTR_4g094632	39.881	168	81	5	1	164	1	152	1.22e-28	104
MS.gene43028.t1	MTR_3g080940	43.902	123	59	2	1	117	8	126	9.17e-25	95.9
MS.gene43028.t1	MTR_1g106070	46.535	101	52	1	2	100	9	109	2.16e-24	94.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene43028.t1	AT2G34440	42.197	173	88	4	1	162	1	172	7.79e-33	115
MS.gene43028.t1	AT2G24840	38.415	164	86	4	1	150	62	224	6.31e-31	113
MS.gene43028.t1	AT3G66656	40.341	176	88	4	1	160	1	175	1.78e-30	109
MS.gene43028.t1	AT5G60440	44.172	163	64	6	2	143	7	163	5.95e-28	106
MS.gene43028.t1	AT1G01530	46.903	113	57	3	1	112	6	116	1.71e-23	93.6
MS.gene43028.t1	AT1G47760	55.882	68	30	0	1	68	1	68	6.84e-22	87.8
MS.gene43028.t1	AT1G65360	55.072	69	31	0	1	69	6	74	1.93e-20	85.1
MS.gene43028.t1	AT4G36590	57.353	68	29	0	2	69	7	74	2.33e-20	85.5
MS.gene43028.t1	AT3G57230	47.674	86	38	1	1	86	1	79	2.33e-20	82.8
MS.gene43028.t1	AT3G57230	47.674	86	38	1	1	86	1	79	6.53e-20	84.0

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Find 43 sgRNAs with CRISPR-Local

Find 44 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAAAGTCGCAAGAAAGAA+AGG	0.460568	8.1:+55981431	MS.gene43028:CDS
AACTGAACTCACTCAACTTG+AGG	0.538837	8.1:+55981295	MS.gene43028:CDS
AATGAACTTGCCATCTTGTG+CGG	0.538350	8.1:+55981023	MS.gene43028:CDS
AATGAGTAAGGCTTATTCCC+AGG	0.515959	8.1:-55981074	None:intergenic
AATGTAACCTGCCTTATGAT+AGG	0.459002	8.1:-55980966	None:intergenic
AATTTCTGCCCCGCACAAGA+TGG	0.555860	8.1:-55981033	None:intergenic
ACATTCTCTAAGCGTCGAAC+AGG	0.429261	8.1:+55980984	MS.gene43028:CDS
ACTTCTTGCAGAGAAACCGG+TGG	0.709944	8.1:+55981397	MS.gene43028:CDS
AGATGTGCTAGCTCAACTAA+AGG	0.611567	8.1:+55981220	MS.gene43028:CDS
AGATTCATATCGGAAATTGA+AGG	0.637344	8.1:+55981325	MS.gene43028:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGATTCATATCGGAAATTGA+AGG	+	chr8.1:55981325-55981344	MS.gene43028:CDS	30.0%
ATATCGGAAATTGAAGGAAA+TGG	+	chr8.1:55981331-55981350	MS.gene43028:CDS	30.0%
AACAAAGTCGCAAGAAAGAA+AGG	+	chr8.1:55981431-55981450	MS.gene43028:CDS	35.0%
AATGTAACCTGCCTTATGAT+AGG	-	chr8.1:55980969-55980988	None:intergenic	35.0%
ATGCAACATCATCAACACTT+GGG	-	chr8.1:55981106-55981125	None:intergenic	35.0%
ATGTAACCTGCCTTATGATA+GGG	-	chr8.1:55980968-55980987	None:intergenic	35.0%
GTTGCATCCAAATTTCTTGA+AGG	+	chr8.1:55981119-55981138	MS.gene43028:CDS	35.0%
TCGAACAGGATTATTCAAGA+AGG	+	chr8.1:55980998-55981017	MS.gene43028:CDS	35.0%
AACTGAACTCACTCAACTTG+AGG	+	chr8.1:55981295-55981314	MS.gene43028:CDS	40.0%
AATGAACTTGCCATCTTGTG+CGG	+	chr8.1:55981023-55981042	MS.gene43028:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	55980927	55981472	55980927	ID=MS.gene43028
chr8.1	mRNA	55980927	55981472	55980927	ID=MS.gene43028.t1;Parent=MS.gene43028
chr8.1	exon	55980927	55981472	55980927	ID=MS.gene43028.t1.exon1;Parent=MS.gene43028.t1
chr8.1	CDS	55980927	55981472	55980927	ID=cds.MS.gene43028.t1;Parent=MS.gene43028.t1

Gene Sequence

>MS.gene43028

ATGGGTCGTCGCAAAATTGCGATTGTGAGGGTGAGAGACCCTATCATAAGGCAGGTTACATTCTCTAAGCGTCGAACAGGATTATTCAAGAAGGCAAATGAACTTGCCATCTTGTGCGGGGCAGAAATTGCTATTGTTGTGTTCTCCCCTGGGAATAAGCCTTACTCATTCGGGCACCCAAGTGTTGATGATGTTGCATCCAAATTTCTTGAAGGAGAGCTCAACCTAGATGATGGCATAGGAAGCTCATCTTCTGAAGTTCCAAACAGAGAGGATCTGAATCAACAACTTGAAGATGTGCTAGCTCAACTAAAGGAGGCTGAAAATGAAGCAAGGGCACATGATGAGATCCTAGAAGAATACAAACCAACTGAACTCACTCAACTTGAGGATTTGAAAGATTCATATCGGAAATTGAAGGAAATGGTGAGATCACGTCTTAGTGATTTAGAAACAACTGAATCTATGTTACTTCTTGCAGAGAAACCGGTGGTTGGAACAAAAAACAAAGTCGCAAGAAAGAAAGGAAAACAACCAATGCTTTAG

Protein sequence

>MS.gene43028.t1

MGRRKIAIVRVRDPIIRQVTFSKRRTGLFKKANELAILCGAEIAIVVFSPGNKPYSFGHPSVDDVASKFLEGELNLDDGIGSSSSEVPNREDLNQQLEDVLAQLKEAENEARAHDEILEEYKPTELTQLEDLKDSYRKLKEMVRSRLSDLETTESMLLLAEKPVVGTKNKVARKKGKQPML