Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43043.t1 | XP_003596811.1 | 80.3 | 290 | 37 | 3 | 1 | 272 | 1 | 288 | 8.20E-110 | 406.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43043.t1 | Q8RYD6 | 38.8 | 304 | 136 | 9 | 3 | 265 | 25 | 319 | 3.1e-33 | 143.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43043.t1 | G7ITS3 | 80.3 | 290 | 37 | 3 | 1 | 272 | 1 | 288 | 5.9e-110 | 406.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene43043.t1 | TF | bZIP |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43043.t1 | MTR_2g086390 | 82.759 | 290 | 30 | 3 | 1 | 272 | 1 | 288 | 1.66e-169 | 470 |
MS.gene43043.t1 | MTR_2g086390 | 80.620 | 258 | 30 | 3 | 1 | 240 | 1 | 256 | 3.95e-145 | 408 |
MS.gene43043.t1 | MTR_2g086340 | 64.000 | 325 | 63 | 8 | 1 | 272 | 1 | 324 | 7.35e-123 | 353 |
MS.gene43043.t1 | MTR_3g010660 | 32.372 | 312 | 118 | 12 | 19 | 257 | 29 | 320 | 2.52e-26 | 105 |
MS.gene43043.t1 | MTR_8g043960 | 35.581 | 267 | 112 | 12 | 18 | 237 | 32 | 285 | 7.01e-26 | 103 |
MS.gene43043.t1 | MTR_7g088090 | 33.216 | 283 | 112 | 10 | 19 | 238 | 25 | 293 | 3.49e-24 | 99.4 |
MS.gene43043.t1 | MTR_7g104480 | 42.222 | 135 | 61 | 3 | 18 | 135 | 47 | 181 | 2.63e-23 | 98.6 |
MS.gene43043.t1 | MTR_7g104480 | 57.732 | 97 | 38 | 1 | 172 | 265 | 323 | 419 | 1.44e-20 | 90.9 |
MS.gene43043.t1 | MTR_6g026800 | 32.609 | 276 | 122 | 9 | 19 | 237 | 25 | 293 | 1.09e-17 | 81.6 |
MS.gene43043.t1 | MTR_5g088230 | 31.081 | 222 | 135 | 5 | 17 | 237 | 37 | 241 | 7.10e-17 | 78.6 |
MS.gene43043.t1 | MTR_5g088230 | 31.081 | 222 | 135 | 5 | 17 | 237 | 32 | 236 | 7.78e-17 | 78.6 |
MS.gene43043.t1 | MTR_3g101780 | 52.564 | 78 | 30 | 1 | 160 | 237 | 325 | 395 | 4.40e-15 | 75.1 |
MS.gene43043.t1 | MTR_3g101780 | 38.095 | 126 | 55 | 7 | 18 | 134 | 35 | 146 | 2.26e-13 | 69.7 |
MS.gene43043.t1 | MTR_4g085910 | 45.098 | 102 | 44 | 3 | 163 | 263 | 281 | 371 | 7.23e-13 | 68.2 |
MS.gene43043.t1 | MTR_4g094390 | 35.556 | 135 | 63 | 4 | 117 | 251 | 77 | 187 | 1.92e-12 | 65.1 |
MS.gene43043.t1 | MTR_7g015990 | 43.956 | 91 | 45 | 3 | 153 | 237 | 76 | 166 | 5.36e-12 | 63.5 |
MS.gene43043.t1 | MTR_5g022780 | 39.516 | 124 | 53 | 3 | 141 | 249 | 120 | 236 | 6.15e-11 | 61.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43043.t1 | AT3G44460 | 42.308 | 286 | 118 | 10 | 18 | 265 | 43 | 319 | 7.33e-49 | 164 |
MS.gene43043.t1 | AT2G36270 | 56.436 | 101 | 43 | 1 | 151 | 250 | 312 | 412 | 1.63e-27 | 110 |
MS.gene43043.t1 | AT2G36270 | 45.333 | 75 | 28 | 2 | 71 | 132 | 145 | 219 | 1.64e-11 | 64.3 |
MS.gene43043.t1 | AT2G36270 | 55.340 | 103 | 45 | 1 | 151 | 252 | 312 | 414 | 2.29e-27 | 110 |
MS.gene43043.t1 | AT2G36270 | 32.203 | 177 | 56 | 6 | 18 | 132 | 45 | 219 | 1.50e-15 | 76.3 |
MS.gene43043.t1 | AT2G36270 | 55.340 | 103 | 45 | 1 | 151 | 252 | 312 | 414 | 2.29e-27 | 110 |
MS.gene43043.t1 | AT2G36270 | 32.203 | 177 | 56 | 6 | 18 | 132 | 45 | 219 | 1.50e-15 | 76.3 |
MS.gene43043.t1 | AT3G56850 | 34.231 | 260 | 117 | 11 | 18 | 237 | 24 | 269 | 5.57e-27 | 106 |
MS.gene43043.t1 | AT2G41070 | 32.735 | 223 | 115 | 4 | 25 | 238 | 39 | 235 | 3.62e-25 | 100 |
MS.gene43043.t1 | AT2G41070 | 32.735 | 223 | 115 | 4 | 25 | 238 | 39 | 235 | 7.10e-25 | 100 |
MS.gene43043.t1 | AT2G41070 | 32.735 | 223 | 115 | 4 | 25 | 238 | 39 | 235 | 7.10e-25 | 100 |
MS.gene43043.t1 | AT2G41070 | 32.735 | 223 | 115 | 4 | 25 | 238 | 39 | 235 | 7.10e-25 | 100 |
MS.gene43043.t1 | AT2G41070 | 32.735 | 223 | 115 | 4 | 25 | 238 | 48 | 244 | 8.80e-25 | 100 |
MS.gene43043.t1 | AT5G44080 | 29.787 | 188 | 99 | 5 | 81 | 252 | 120 | 290 | 3.87e-15 | 74.3 |
MS.gene43043.t1 | AT1G45249 | 48.718 | 78 | 32 | 1 | 160 | 237 | 311 | 380 | 9.13e-15 | 73.9 |
MS.gene43043.t1 | AT1G45249 | 32.576 | 132 | 75 | 4 | 18 | 137 | 29 | 158 | 1.60e-11 | 64.3 |
MS.gene43043.t1 | AT1G45249 | 48.718 | 78 | 32 | 1 | 160 | 237 | 326 | 395 | 1.12e-14 | 73.9 |
MS.gene43043.t1 | AT1G45249 | 32.576 | 132 | 75 | 4 | 18 | 137 | 44 | 173 | 1.56e-11 | 64.3 |
MS.gene43043.t1 | AT1G45249 | 48.718 | 78 | 32 | 1 | 160 | 237 | 326 | 395 | 1.12e-14 | 73.9 |
MS.gene43043.t1 | AT1G45249 | 32.576 | 132 | 75 | 4 | 18 | 137 | 44 | 173 | 1.56e-11 | 64.3 |
MS.gene43043.t1 | AT4G34000 | 57.143 | 63 | 27 | 0 | 190 | 252 | 369 | 431 | 7.56e-14 | 71.2 |
MS.gene43043.t1 | AT4G34000 | 57.143 | 63 | 27 | 0 | 190 | 252 | 369 | 431 | 7.56e-14 | 71.2 |
MS.gene43043.t1 | AT4G34000 | 57.143 | 63 | 27 | 0 | 190 | 252 | 369 | 431 | 7.56e-14 | 71.2 |
MS.gene43043.t1 | AT1G03970 | 30.168 | 179 | 101 | 5 | 81 | 252 | 85 | 246 | 8.70e-14 | 70.1 |
MS.gene43043.t1 | AT1G49720 | 34.694 | 147 | 73 | 5 | 18 | 148 | 31 | 170 | 1.73e-13 | 70.1 |
MS.gene43043.t1 | AT1G49720 | 55.738 | 61 | 27 | 0 | 190 | 250 | 308 | 368 | 7.56e-12 | 65.5 |
MS.gene43043.t1 | AT1G49720 | 34.694 | 147 | 73 | 5 | 18 | 148 | 31 | 170 | 1.73e-13 | 70.1 |
MS.gene43043.t1 | AT1G49720 | 55.738 | 61 | 27 | 0 | 190 | 250 | 308 | 368 | 7.56e-12 | 65.5 |
MS.gene43043.t1 | AT3G19290 | 59.016 | 61 | 25 | 0 | 190 | 250 | 348 | 408 | 1.74e-13 | 70.1 |
MS.gene43043.t1 | AT3G19290 | 59.016 | 61 | 25 | 0 | 190 | 250 | 348 | 408 | 1.74e-13 | 70.1 |
MS.gene43043.t1 | AT3G19290 | 56.452 | 62 | 27 | 0 | 190 | 251 | 348 | 409 | 1.77e-13 | 70.1 |
MS.gene43043.t1 | AT1G49720 | 34.694 | 147 | 73 | 5 | 18 | 148 | 31 | 170 | 1.85e-13 | 70.1 |
MS.gene43043.t1 | AT1G49720 | 53.226 | 62 | 29 | 0 | 190 | 251 | 308 | 369 | 9.98e-12 | 65.1 |
MS.gene43043.t1 | AT3G19290 | 51.316 | 76 | 35 | 1 | 190 | 265 | 348 | 421 | 3.65e-13 | 69.3 |
MS.gene43043.t1 | AT4G34000 | 64.583 | 48 | 17 | 0 | 190 | 237 | 369 | 416 | 3.41e-12 | 66.6 |
MS.gene43043.t1 | AT2G17770 | 32.143 | 196 | 107 | 7 | 84 | 257 | 2 | 193 | 4.63e-12 | 63.9 |
MS.gene43043.t1 | AT1G45249 | 42.697 | 89 | 32 | 2 | 160 | 237 | 311 | 391 | 7.57e-12 | 65.5 |
MS.gene43043.t1 | AT1G45249 | 32.576 | 132 | 75 | 4 | 18 | 137 | 29 | 158 | 2.30e-11 | 63.9 |
MS.gene43043.t1 | AT1G45249 | 32.576 | 132 | 75 | 4 | 18 | 137 | 29 | 158 | 4.28e-11 | 63.2 |
MS.gene43043.t1 | AT1G45249 | 32.576 | 132 | 75 | 4 | 18 | 137 | 29 | 158 | 4.28e-11 | 63.2 |
MS.gene43043.t1 | AT4G35900 | 52.941 | 68 | 27 | 1 | 195 | 257 | 216 | 283 | 6.32e-11 | 62.0 |
MS.gene43043.t1 | AT1G45249 | 32.576 | 132 | 75 | 4 | 18 | 137 | 29 | 158 | 6.75e-11 | 62.4 |
MS.gene43043.t1 | AT1G45249 | 32.576 | 132 | 75 | 4 | 18 | 137 | 29 | 158 | 6.75e-11 | 62.4 |
MS.gene43043.t1 | AT1G45249 | 32.576 | 132 | 75 | 4 | 18 | 137 | 29 | 158 | 6.75e-11 | 62.4 |
MS.gene43043.t1 | AT1G45249 | 32.576 | 132 | 75 | 4 | 18 | 137 | 29 | 158 | 6.75e-11 | 62.4 |
Find 46 sgRNAs with CRISPR-Local
Find 78 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACCATCAATTATCCTCTTTC+TGG | 0.164582 | 2.4:+13824528 | None:intergenic |
ATGAGTTCCTAGCCAGTATT+TGG | 0.254341 | 2.4:-13824969 | MS.gene43043:CDS |
TAAAATGCTGAAACAATTTC+TGG | 0.256037 | 2.4:-13824002 | MS.gene43043:intron |
CTTGTCATTTGGTATGTTGC+AGG | 0.294849 | 2.4:+13824577 | None:intergenic |
TTTCGCTCCAATAGAACTTC+AGG | 0.322405 | 2.4:+13824502 | None:intergenic |
CCACTGAATATTGCAAGTTC+TGG | 0.324558 | 2.4:-13824616 | MS.gene43043:CDS |
ACTCAGCTCCACTTGTCATT+TGG | 0.334133 | 2.4:+13824566 | None:intergenic |
AGAAAACTTCGGATGAAGTT+TGG | 0.353717 | 2.4:-13824828 | MS.gene43043:CDS |
CAAAGTTCTTGAAATCATCT+AGG | 0.390515 | 2.4:+13825007 | None:intergenic |
GCAATCAGCAAAGGTTCAAA+AGG | 0.420453 | 2.4:-13823752 | MS.gene43043:CDS |
GACTGAATCACCAAGTTGTT+GGG | 0.423167 | 2.4:+13824873 | None:intergenic |
ATCACTGGAACTCCAAATAC+TGG | 0.430426 | 2.4:+13824957 | None:intergenic |
GAGGATTTCTTGGTAAAAGC+TGG | 0.453104 | 2.4:-13824706 | MS.gene43043:CDS |
TTTCTTCTTTGAATTGTGGT+TGG | 0.465921 | 2.4:+13824788 | None:intergenic |
GTCATTGAGGCTTATTCACC+AGG | 0.470334 | 2.4:+13823702 | None:intergenic |
AGACTGAATCACCAAGTTGT+TGG | 0.471123 | 2.4:+13824872 | None:intergenic |
TGGTTGGTATTTATGAATCT+CGG | 0.488633 | 2.4:+13824804 | None:intergenic |
ATCACCAAGTTGTTGGGAAC+TGG | 0.493001 | 2.4:+13824879 | None:intergenic |
CACACCAGTTCCCAACAACT+TGG | 0.498257 | 2.4:-13824883 | MS.gene43043:CDS |
TCCTCAAAAGTCATTTCTCC+AGG | 0.507331 | 2.4:+13824724 | None:intergenic |
CAATCAGCAAAGGTTCAAAA+GGG | 0.509524 | 2.4:-13823751 | MS.gene43043:CDS |
TTCGCTCCAATAGAACTTCA+GGG | 0.513014 | 2.4:+13824503 | None:intergenic |
TAGGAACTCATCCATGTTGA+GGG | 0.517404 | 2.4:+13824981 | None:intergenic |
TTGTGTAGTAGCTTCATCAC+TGG | 0.520796 | 2.4:+13824942 | None:intergenic |
ACGTTCTCGAGCAAGACGTC+AGG | 0.524988 | 2.4:-13824443 | MS.gene43043:intron |
ACCAGAAAGAGGATAATTGA+TGG | 0.532983 | 2.4:-13824529 | MS.gene43043:CDS |
TCCAGTTTGCAAGAAAACTT+CGG | 0.535572 | 2.4:-13824839 | MS.gene43043:CDS |
AAAGTTCTTGAAATCATCTA+GGG | 0.543413 | 2.4:+13825008 | None:intergenic |
GCAAAGAAAGCAATCAGCAA+AGG | 0.559335 | 2.4:-13823761 | MS.gene43043:CDS |
TTGTCGTTTCAGAATCATAG+TGG | 0.559475 | 2.4:-13824661 | MS.gene43043:CDS |
CGCTCCAATAGAACTTCAGG+GGG | 0.565451 | 2.4:+13824505 | None:intergenic |
CTAGGAACTCATCCATGTTG+AGG | 0.566833 | 2.4:+13824980 | None:intergenic |
CTCAAGAAGCAAGAAACACC+TGG | 0.571531 | 2.4:-13824742 | MS.gene43043:CDS |
AGGCTGAAGCTGAGAACAAG+AGG | 0.580689 | 2.4:-13823883 | MS.gene43043:CDS |
TGGAACTCCAAATACTGGCT+AGG | 0.584202 | 2.4:+13824962 | None:intergenic |
TCTACAACAATTAGATCAAG+AGG | 0.584508 | 2.4:-13825061 | MS.gene43043:CDS |
AATCAAGCTCAAGCACAACC+TGG | 0.585556 | 2.4:-13823720 | MS.gene43043:CDS |
GTGGAGCTGCTACCAGAAAG+AGG | 0.587980 | 2.4:-13824540 | MS.gene43043:CDS |
GGCTTATACAATAGAGCTAG+AGG | 0.593351 | 2.4:-13824053 | MS.gene43043:CDS |
GAACTTTGACTCCCTCAACA+TGG | 0.606896 | 2.4:-13824992 | MS.gene43043:CDS |
GCAACATACCAAATGACAAG+TGG | 0.610150 | 2.4:-13824574 | MS.gene43043:CDS |
ACAAGTGGAGCTGAGTCAAG+TGG | 0.615825 | 2.4:-13824559 | MS.gene43043:CDS |
CCAGAACTTGCAATATTCAG+TGG | 0.629052 | 2.4:+13824616 | None:intergenic |
TCGCTCCAATAGAACTTCAG+GGG | 0.629189 | 2.4:+13824504 | None:intergenic |
TGAGAACAAGAGGAAACAAG+AGG | 0.643173 | 2.4:-13823873 | MS.gene43043:intron |
AATCAGCAAAGGTTCAAAAG+GGG | 0.678708 | 2.4:-13823750 | MS.gene43043:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TACTTATTAATCACATAACT+TGG | - | chr2.4:13824408-13824427 | MS.gene43043:intron | 20.0% |
!!! | TACCTATTTAAATCTGAAAT+AGG | - | chr2.4:13824880-13824899 | MS.gene43043:CDS | 20.0% |
!!! | TTATTTTCTTCTTTGAATTG+TGG | + | chr2.4:13824002-13824021 | None:intergenic | 20.0% |
!!! | TTTTTTATATGCAAACGTTA+CGG | + | chr2.4:13824695-13824714 | None:intergenic | 20.0% |
! | AAAAAAAAATCTTGCAATGC+AGG | - | chr2.4:13824709-13824728 | MS.gene43043:CDS | 25.0% |
! | AAAGTTCTTGAAATCATCTA+GGG | + | chr2.4:13823778-13823797 | None:intergenic | 25.0% |
! | AATGATGAAAAATCGAGAAT+CGG | - | chr2.4:13824313-13824332 | MS.gene43043:intron | 25.0% |
! | AGCCTATTTCAGATTTAAAT+AGG | + | chr2.4:13824885-13824904 | None:intergenic | 25.0% |
! | CAATACTGAAACTGAATATA+CGG | - | chr2.4:13824808-13824827 | MS.gene43043:CDS | 25.0% |
! | TAAAATGCTGAAACAATTTC+TGG | - | chr2.4:13824781-13824800 | MS.gene43043:CDS | 25.0% |
!! | AGATTTTAAATAACAGTCTG+TGG | - | chr2.4:13824590-13824609 | MS.gene43043:CDS | 25.0% |
!!! | ATGTCTCTGAAATTAAAGTT+GGG | - | chr2.4:13824645-13824664 | MS.gene43043:CDS | 25.0% |
!!! | TATGTCTCTGAAATTAAAGT+TGG | - | chr2.4:13824644-13824663 | MS.gene43043:CDS | 25.0% |
CAAAGTTCTTGAAATCATCT+AGG | + | chr2.4:13823779-13823798 | None:intergenic | 30.0% | |
TAAAATCGTGTTTACCTTTG+CGG | - | chr2.4:13824452-13824471 | MS.gene43043:CDS | 30.0% | |
TCTACAACAATTAGATCAAG+AGG | - | chr2.4:13823722-13823741 | MS.gene43043:CDS | 30.0% | |
TTTCTTCTTTGAATTGTGGT+TGG | + | chr2.4:13823998-13824017 | None:intergenic | 30.0% | |
! | TGAGTGTCTCATTTCTTTTA+AGG | + | chr2.4:13824025-13824044 | None:intergenic | 30.0% |
! | TGGTTGGTATTTATGAATCT+CGG | + | chr2.4:13823982-13824001 | None:intergenic | 30.0% |
!! | AATGACTTTTGAGGATTTCT+TGG | - | chr2.4:13824067-13824086 | MS.gene43043:intron | 30.0% |
AAATCCAACACAAATGTGAC+AGG | - | chr2.4:13824502-13824521 | MS.gene43043:CDS | 35.0% | |
AATCAGCAAAGGTTCAAAAG+GGG | - | chr2.4:13825033-13825052 | MS.gene43043:CDS | 35.0% | |
ACCAGAAAGAGGATAATTGA+TGG | - | chr2.4:13824254-13824273 | MS.gene43043:intron | 35.0% | |
ACCATCAATTATCCTCTTTC+TGG | + | chr2.4:13824258-13824277 | None:intergenic | 35.0% | |
AGAAAACTTCGGATGAAGTT+TGG | - | chr2.4:13823955-13823974 | MS.gene43043:intron | 35.0% | |
CAATCAGCAAAGGTTCAAAA+GGG | - | chr2.4:13825032-13825051 | MS.gene43043:CDS | 35.0% | |
TCCAGTTTGCAAGAAAACTT+CGG | - | chr2.4:13823944-13823963 | MS.gene43043:intron | 35.0% | |
TTATGTCACAGCCTAAATCA+CGG | + | chr2.4:13824616-13824635 | None:intergenic | 35.0% | |
TTGGATTTATCGCGAAATCA+AGG | + | chr2.4:13824490-13824509 | None:intergenic | 35.0% | |
! | TTGTCGTTTCAGAATCATAG+TGG | - | chr2.4:13824122-13824141 | MS.gene43043:intron | 35.0% |
!! | CTCTGAAATTAAAGTTGGGA+CGG | - | chr2.4:13824649-13824668 | MS.gene43043:CDS | 35.0% |
AGACTGAATCACCAAGTTGT+TGG | + | chr2.4:13823914-13823933 | None:intergenic | 40.0% | |
ATCACTGGAACTCCAAATAC+TGG | + | chr2.4:13823829-13823848 | None:intergenic | 40.0% | |
ATGAGTTCCTAGCCAGTATT+TGG | - | chr2.4:13823814-13823833 | MS.gene43043:intron | 40.0% | |
CCACTGAATATTGCAAGTTC+TGG | - | chr2.4:13824167-13824186 | MS.gene43043:intron | 40.0% | |
CCAGAACTTGCAATATTCAG+TGG | + | chr2.4:13824170-13824189 | None:intergenic | 40.0% | |
GACTGAATCACCAAGTTGTT+GGG | + | chr2.4:13823913-13823932 | None:intergenic | 40.0% | |
GAGGATTTCTTGGTAAAAGC+TGG | - | chr2.4:13824077-13824096 | MS.gene43043:intron | 40.0% | |
GCAAAGAAAGCAATCAGCAA+AGG | - | chr2.4:13825022-13825041 | MS.gene43043:CDS | 40.0% | |
GCAACATACCAAATGACAAG+TGG | - | chr2.4:13824209-13824228 | MS.gene43043:intron | 40.0% | |
GCAATCAGCAAAGGTTCAAA+AGG | - | chr2.4:13825031-13825050 | MS.gene43043:CDS | 40.0% | |
GGCTTATACAATAGAGCTAG+AGG | - | chr2.4:13824730-13824749 | MS.gene43043:CDS | 40.0% | |
GTGATTTAGGCTGTGACATA+AGG | - | chr2.4:13824615-13824634 | MS.gene43043:CDS | 40.0% | |
TAGGAACTCATCCATGTTGA+GGG | + | chr2.4:13823805-13823824 | None:intergenic | 40.0% | |
TCCTCAAAAGTCATTTCTCC+AGG | + | chr2.4:13824062-13824081 | None:intergenic | 40.0% | |
TGAACCTGTCACATTTGTGT+TGG | + | chr2.4:13824509-13824528 | None:intergenic | 40.0% | |
TGAGAACAAGAGGAAACAAG+AGG | - | chr2.4:13824910-13824929 | MS.gene43043:CDS | 40.0% | |
TTCGCTCCAATAGAACTTCA+GGG | + | chr2.4:13824283-13824302 | None:intergenic | 40.0% | |
TTGTGTAGTAGCTTCATCAC+TGG | + | chr2.4:13823844-13823863 | None:intergenic | 40.0% | |
TTTCGCTCCAATAGAACTTC+AGG | + | chr2.4:13824284-13824303 | None:intergenic | 40.0% | |
! | ACCTGGAGAAATGACTTTTG+AGG | - | chr2.4:13824058-13824077 | MS.gene43043:intron | 40.0% |
! | CTTGTCATTTGGTATGTTGC+AGG | + | chr2.4:13824209-13824228 | None:intergenic | 40.0% |
! | GAAGTTTTCTTGCAAACTGG+AGG | + | chr2.4:13823945-13823964 | None:intergenic | 40.0% |
! | TCCGAAGTTTTCTTGCAAAC+TGG | + | chr2.4:13823948-13823967 | None:intergenic | 40.0% |
! | TTTTCTTGCAAACTGGAGGA+GGG | + | chr2.4:13823941-13823960 | None:intergenic | 40.0% |
!!! | GTAAGTGCGTTTTGATTGCT+CGG | + | chr2.4:13823756-13823775 | None:intergenic | 40.0% |
AAAGTCTGTGACCGTGATTG+AGG | + | chr2.4:13824533-13824552 | None:intergenic | 45.0% | |
AATCAAGCTCAAGCACAACC+TGG | - | chr2.4:13825063-13825082 | MS.gene43043:CDS | 45.0% | |
ACTCAGCTCCACTTGTCATT+TGG | + | chr2.4:13824220-13824239 | None:intergenic | 45.0% | |
ATCACCAAGTTGTTGGGAAC+TGG | + | chr2.4:13823907-13823926 | None:intergenic | 45.0% | |
CTAGGAACTCATCCATGTTG+AGG | + | chr2.4:13823806-13823825 | None:intergenic | 45.0% | |
CTCAAGAAGCAAGAAACACC+TGG | - | chr2.4:13824041-13824060 | MS.gene43043:CDS | 45.0% | |
GAACTTTGACTCCCTCAACA+TGG | - | chr2.4:13823791-13823810 | MS.gene43043:intron | 45.0% | |
TCGCTCCAATAGAACTTCAG+GGG | + | chr2.4:13824282-13824301 | None:intergenic | 45.0% | |
! | GCAAACGTTACGGACTATCA+CGG | + | chr2.4:13824685-13824704 | None:intergenic | 45.0% |
! | GTTTTCTTGCAAACTGGAGG+AGG | + | chr2.4:13823942-13823961 | None:intergenic | 45.0% |
! | TGGAACTCCAAATACTGGCT+AGG | + | chr2.4:13823824-13823843 | None:intergenic | 45.0% |
! | TTGGAGAGTGCATCTGTGAA+AGG | - | chr2.4:13824427-13824446 | MS.gene43043:intron | 45.0% |
ACAAGTGGAGCTGAGTCAAG+TGG | - | chr2.4:13824224-13824243 | MS.gene43043:intron | 50.0% | |
ACAGTCTGTGGCCGTGATTT+AGG | - | chr2.4:13824602-13824621 | MS.gene43043:CDS | 50.0% | |
AGGCTGAAGCTGAGAACAAG+AGG | - | chr2.4:13824900-13824919 | MS.gene43043:CDS | 50.0% | |
CACACCAGTTCCCAACAACT+TGG | - | chr2.4:13823900-13823919 | MS.gene43043:intron | 50.0% | |
CGCTCCAATAGAACTTCAGG+GGG | + | chr2.4:13824281-13824300 | None:intergenic | 50.0% | |
GACAGGTTCAGCCTCAATCA+CGG | - | chr2.4:13824519-13824538 | MS.gene43043:CDS | 50.0% | |
TGGTCCCCCTGAAGTTCTAT+TGG | - | chr2.4:13824274-13824293 | MS.gene43043:intron | 50.0% | |
ACGTTCTCGAGCAAGACGTC+AGG | - | chr2.4:13824340-13824359 | MS.gene43043:intron | 55.0% | |
GGATTGTGAAGCGACCGCAA+AGG | + | chr2.4:13824469-13824488 | None:intergenic | 55.0% | |
GTGGAGCTGCTACCAGAAAG+AGG | - | chr2.4:13824243-13824262 | MS.gene43043:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 13823717 | 13825088 | 13823717 | ID=MS.gene43043 |
chr2.4 | mRNA | 13823717 | 13825088 | 13823717 | ID=MS.gene43043.t1;Parent=MS.gene43043 |
chr2.4 | exon | 13824444 | 13825088 | 13824444 | ID=MS.gene43043.t1.exon1;Parent=MS.gene43043.t1 |
chr2.4 | CDS | 13824444 | 13825088 | 13824444 | ID=cds.MS.gene43043.t1;Parent=MS.gene43043.t1 |
chr2.4 | exon | 13824003 | 13824074 | 13824003 | ID=MS.gene43043.t1.exon2;Parent=MS.gene43043.t1 |
chr2.4 | CDS | 13824003 | 13824074 | 13824003 | ID=cds.MS.gene43043.t1;Parent=MS.gene43043.t1 |
chr2.4 | exon | 13823874 | 13823903 | 13823874 | ID=MS.gene43043.t1.exon3;Parent=MS.gene43043.t1 |
chr2.4 | CDS | 13823874 | 13823903 | 13823874 | ID=cds.MS.gene43043.t1;Parent=MS.gene43043.t1 |
chr2.4 | exon | 13823717 | 13823788 | 13823717 | ID=MS.gene43043.t1.exon4;Parent=MS.gene43043.t1 |
chr2.4 | CDS | 13823717 | 13823788 | 13823717 | ID=cds.MS.gene43043.t1;Parent=MS.gene43043.t1 |
Gene Sequence |
Protein sequence |