AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene43044

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene43044.t1 MTR_2g086340 94.154 325 18 1 1 325 1 324 0.0 608
MS.gene43044.t1 MTR_2g086390 67.485 326 67 5 1 325 1 288 7.64e-149 420
MS.gene43044.t1 MTR_2g086390 67.474 289 60 4 1 288 1 256 3.50e-132 378
MS.gene43044.t1 MTR_8g043960 37.324 284 131 11 25 285 26 285 9.35e-36 131
MS.gene43044.t1 MTR_3g010660 35.714 294 145 14 20 285 17 294 2.51e-34 128
MS.gene43044.t1 MTR_7g088090 35.855 304 148 12 12 286 8 293 3.15e-34 127
MS.gene43044.t1 MTR_7g104480 47.761 134 57 4 29 149 45 178 2.48e-29 116
MS.gene43044.t1 MTR_7g104480 47.929 169 56 5 168 319 272 425 3.95e-26 107
MS.gene43044.t1 MTR_6g026800 36.455 299 131 11 24 285 17 293 7.50e-27 108
MS.gene43044.t1 MTR_3g101780 42.748 131 60 6 24 151 28 146 9.38e-20 89.7
MS.gene43044.t1 MTR_3g101780 70.175 57 17 0 229 285 339 395 2.15e-16 79.7
MS.gene43044.t1 MTR_4g085910 50.549 91 35 2 236 325 295 376 1.04e-15 77.4
MS.gene43044.t1 MTR_4g085910 34.559 136 69 4 24 151 19 142 9.24e-15 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene43044.t1 AT3G44460 44.144 333 155 9 7 325 16 331 1.56e-68 217
MS.gene43044.t1 AT2G36270 35.252 417 139 12 20 319 34 436 6.20e-56 188
MS.gene43044.t1 AT2G36270 35.252 417 139 12 20 319 34 436 6.20e-56 188
MS.gene43044.t1 AT2G36270 35.623 393 125 11 20 298 34 412 7.70e-55 185
MS.gene43044.t1 AT3G56850 39.785 279 123 12 25 285 18 269 5.72e-41 145
MS.gene43044.t1 AT2G41070 35.338 266 122 8 24 286 17 235 2.31e-36 131
MS.gene43044.t1 AT2G41070 35.338 266 122 8 24 286 26 244 3.86e-36 131
MS.gene43044.t1 AT2G41070 35.793 271 123 9 24 291 17 239 4.12e-36 131
MS.gene43044.t1 AT2G41070 35.793 271 123 9 24 291 17 239 4.12e-36 131
MS.gene43044.t1 AT2G41070 35.793 271 123 9 24 291 17 239 4.12e-36 131
MS.gene43044.t1 AT1G49720 31.638 354 163 12 21 299 20 369 2.76e-25 105
MS.gene43044.t1 AT1G49720 28.756 386 181 13 21 325 20 392 8.19e-22 95.5
MS.gene43044.t1 AT1G49720 28.756 386 181 13 21 325 20 392 8.19e-22 95.5
MS.gene43044.t1 AT1G45249 35.294 153 88 2 24 165 37 189 1.05e-19 89.7
MS.gene43044.t1 AT1G45249 51.456 103 41 4 224 325 337 431 8.48e-16 78.2
MS.gene43044.t1 AT1G45249 35.294 153 88 2 24 165 37 189 1.05e-19 89.7
MS.gene43044.t1 AT1G45249 51.456 103 41 4 224 325 337 431 8.48e-16 78.2
MS.gene43044.t1 AT1G45249 35.294 153 88 2 24 165 22 174 1.21e-19 89.4
MS.gene43044.t1 AT1G45249 51.456 103 41 4 224 325 322 416 7.51e-16 78.2
MS.gene43044.t1 AT1G45249 35.294 153 88 2 24 165 22 174 1.87e-19 89.0
MS.gene43044.t1 AT1G45249 46.491 114 41 5 224 325 322 427 4.89e-13 69.7
MS.gene43044.t1 AT1G45249 35.294 153 88 2 24 165 22 174 2.57e-19 87.8
MS.gene43044.t1 AT1G45249 35.294 153 88 2 24 165 22 174 2.57e-19 87.8
MS.gene43044.t1 AT1G45249 35.294 153 88 2 24 165 22 174 3.42e-19 87.8
MS.gene43044.t1 AT1G45249 35.294 153 88 2 24 165 22 174 3.42e-19 87.8
MS.gene43044.t1 AT1G45249 35.294 153 88 2 24 165 22 174 3.42e-19 87.8
MS.gene43044.t1 AT1G45249 35.294 153 88 2 24 165 22 174 3.42e-19 87.8
MS.gene43044.t1 AT4G34000 31.532 222 96 6 24 201 28 237 9.00e-18 84.0
MS.gene43044.t1 AT4G34000 50.000 88 42 1 238 325 369 454 4.75e-16 79.0
MS.gene43044.t1 AT4G34000 31.532 222 96 6 24 201 28 237 9.00e-18 84.0
MS.gene43044.t1 AT4G34000 50.000 88 42 1 238 325 369 454 4.75e-16 79.0
MS.gene43044.t1 AT4G34000 31.532 222 96 6 24 201 28 237 9.00e-18 84.0
MS.gene43044.t1 AT4G34000 50.000 88 42 1 238 325 369 454 4.75e-16 79.0
MS.gene43044.t1 AT4G34000 31.532 222 96 6 24 201 28 237 9.01e-18 84.0
MS.gene43044.t1 AT4G34000 72.917 48 13 0 238 285 369 416 2.82e-14 73.6
MS.gene43044.t1 AT3G19290 47.664 107 52 2 219 325 329 431 5.19e-17 81.6
MS.gene43044.t1 AT3G19290 37.063 143 77 4 24 153 35 177 1.51e-16 80.5
MS.gene43044.t1 AT3G19290 47.664 107 52 2 219 325 329 431 5.19e-17 81.6
MS.gene43044.t1 AT3G19290 37.063 143 77 4 24 153 35 177 1.51e-16 80.5
MS.gene43044.t1 AT3G19290 47.664 107 53 2 219 325 329 432 8.09e-17 81.3
MS.gene43044.t1 AT3G19290 37.063 143 77 4 24 153 35 177 1.66e-16 80.1
MS.gene43044.t1 AT3G19290 37.063 143 77 4 24 153 35 177 1.14e-16 80.5
MS.gene43044.t1 AT3G19290 54.321 81 37 0 219 299 329 409 9.34e-16 77.8
MS.gene43044.t1 AT3G19290 37.063 143 77 4 24 153 35 177 1.54e-16 80.1
MS.gene43044.t1 AT5G44080 30.000 230 125 6 98 325 120 315 1.59e-16 79.3
MS.gene43044.t1 AT2G17770 31.100 209 117 8 100 301 1 189 6.52e-13 67.0
MS.gene43044.t1 AT5G42910 38.095 126 55 5 24 146 21 126 1.27e-12 68.2
MS.gene43044.t1 AT1G03970 26.667 210 99 4 98 300 85 246 2.54e-12 66.6

Find 63 sgRNAs with CRISPR-Local

Find 93 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTCACCAGGTTGTGCTTAT+AGG 0.185713 2.4:+13828178 None:intergenic
AATCATAATGGCAATGTTTC+AGG 0.221412 2.4:-13829215 MS.gene43044:CDS
TCTCTGTCCCTCCTCCAATT+TGG 0.252757 2.4:-13829418 MS.gene43044:CDS
TTGAATATTGCAAGTTGTTA+TGG 0.294474 2.4:-13829179 MS.gene43044:CDS
AATCAAGTGGGTGTAGTAAT+AGG 0.330386 2.4:-13829019 MS.gene43044:CDS
TGAAAATCTAAAACAAGTTC+TGG 0.355048 2.4:-13828523 MS.gene43044:intron
GTCATTGAGGCTTGTTCACC+AGG 0.361408 2.4:+13828165 None:intergenic
AACACTTGGAGAAATGAGTT+TGG 0.378783 2.4:-13829294 MS.gene43044:CDS
GCATTCAACAAAGGCTCAAA+AGG 0.385055 2.4:-13828230 MS.gene43044:CDS
CTTCGCTCCACTACAACTTC+AGG 0.394469 2.4:+13828975 None:intergenic
ACTTACCTCTTGTTTCCTCT+TGG 0.402763 2.4:+13828368 None:intergenic
TGTTATTGTGTGACAACATT+TGG 0.412341 2.4:+13829090 None:intergenic
AGAATGAATTACCAAGTTGT+TGG 0.415586 2.4:+13829438 None:intergenic
ACTCAATGTGTGTCTAGAAA+TGG 0.419253 2.4:-13829125 MS.gene43044:CDS
AGCTCTTTCCACTCTTGCAT+TGG 0.422494 2.4:+13829573 None:intergenic
GAGGATTTCTTAGTAAAAGC+TGG 0.422923 2.4:-13829272 MS.gene43044:CDS
TGCAAGAGTGGAAAGAGCTT+TGG 0.423243 2.4:-13829569 MS.gene43044:CDS
ATGAATTCCTTGCCAGCATA+TGG 0.439595 2.4:-13829532 MS.gene43044:CDS
TTGCAAGTTGTTATGGTTTG+AGG 0.440862 2.4:-13829172 MS.gene43044:CDS
GAATGAATTACCAAGTTGTT+GGG 0.445076 2.4:+13829439 None:intergenic
TCTTGCATTGGAACTCATCA+AGG 0.446472 2.4:+13829585 None:intergenic
TTGCCATTCAAGAATCATAA+TGG 0.446766 2.4:-13829227 MS.gene43044:CDS
TTGCCATTATGATTCTTGAA+TGG 0.449693 2.4:+13829224 None:intergenic
TTATGGTTTGAGGCCTTCAA+TGG 0.451042 2.4:-13829162 MS.gene43044:CDS
GAAAATCCCATTCCCATTGA+AGG 0.469209 2.4:+13829149 None:intergenic
AGAAAACTGTGGATGAAGTT+TGG 0.470434 2.4:-13829394 MS.gene43044:CDS
TTGAGGCCTTCAATGGGAAT+GGG 0.472705 2.4:-13829155 MS.gene43044:CDS
CTCAAGAAGCAACAAACACT+TGG 0.475735 2.4:-13829308 MS.gene43044:CDS
TTATTTGTTTCTTTGAATTG+TGG 0.479374 2.4:+13829350 None:intergenic
GCTTCTGCTTGTTCTTGCAA+TGG 0.484450 2.4:+13829653 None:intergenic
TTTGAGGCCTTCAATGGGAA+TGG 0.489129 2.4:-13829156 MS.gene43044:CDS
ATTACCAAGTTGTTGGGAAA+CGG 0.492082 2.4:+13829445 None:intergenic
TTGTTTCTTTGAATTGTGGT+TGG 0.500429 2.4:+13829354 None:intergenic
CACACCGTTTCCCAACAACT+TGG 0.501090 2.4:-13829449 MS.gene43044:CDS
AATAGGAAGAGGATAATTGA+TGG 0.515045 2.4:-13829002 MS.gene43044:CDS
GTCATTAGAACTCCATATGC+TGG 0.516405 2.4:+13829520 None:intergenic
GTGGGTGTAGTAATAGGAAG+AGG 0.522464 2.4:-13829013 MS.gene43044:CDS
ACTTGGAGAAATGAGTTTGG+AGG 0.522848 2.4:-13829291 MS.gene43044:CDS
AAGGAATTCATCCATGTTGA+GGG 0.524720 2.4:+13829544 None:intergenic
TAACAACTTGCAATATTCAA+TGG 0.527054 2.4:+13829182 None:intergenic
TTGTCACACAATAACAACTT+AGG 0.536827 2.4:-13829083 MS.gene43044:CDS
ATCTAATTGTTGTAGAGCCA+TGG 0.537356 2.4:+13829685 None:intergenic
TATGGTTTGAGGCCTTCAAT+GGG 0.547796 2.4:-13829161 MS.gene43044:CDS
TCGTTCTCGAGCAAGAAGAC+AGG 0.556810 2.4:-13828916 MS.gene43044:intron
GAGCTTTGGTTCCCTCAACA+TGG 0.562617 2.4:-13829555 MS.gene43044:CDS
CATTCAACAAAGGCTCAAAA+GGG 0.564482 2.4:-13828229 MS.gene43044:CDS
GGCATATACATTAGAGCTAG+AGG 0.565644 2.4:-13828574 MS.gene43044:CDS
CAAGGAATTCATCCATGTTG+AGG 0.566750 2.4:+13829543 None:intergenic
TAGAACTCCATATGCTGGCA+AGG 0.571014 2.4:+13829525 None:intergenic
CAATAACAACTTAGGAGTGA+AGG 0.581916 2.4:-13829075 MS.gene43044:CDS
TGGTCCTCCTGAAGTTGTAG+TGG 0.592007 2.4:-13828982 MS.gene43044:CDS
TCTACAACAATTAGATCAAG+AGG 0.593387 2.4:-13829678 MS.gene43044:CDS
TCCAATTTGGAAGAAAACTG+TGG 0.593419 2.4:-13829405 MS.gene43044:CDS
GCAACGAAAGCATTCAACAA+AGG 0.598492 2.4:-13828239 MS.gene43044:CDS
CTGAAGTTGTAGTGGAGCGA+AGG 0.600061 2.4:-13828974 MS.gene43044:CDS
GATGAGTTCCAATGCAAGAG+TGG 0.607955 2.4:-13829581 MS.gene43044:CDS
CTTGCATTGGAACTCATCAA+GGG 0.629128 2.4:+13829586 None:intergenic
CGCTCCACTACAACTTCAGG+AGG 0.642123 2.4:+13828978 None:intergenic
AGGCTGAAGCTGAGACCAAG+AGG 0.647700 2.4:-13828383 MS.gene43044:CDS
TGAGACCAAGAGGAAACAAG+AGG 0.662863 2.4:-13828373 MS.gene43044:intron
GAAGGCCTATAAGCACAACC+TGG 0.668432 2.4:-13828183 MS.gene43044:CDS
CAAAGCTTGACTGAATCAAG+TGG 0.677316 2.4:-13829032 MS.gene43044:CDS
AAAGCTTGACTGAATCAAGT+GGG 0.724655 2.4:-13829031 MS.gene43044:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTCTATCTAAATATGAAAT+AGG - chr2.4:13829460-13829479 MS.gene43044:CDS 15.0%
!!! AAGTTGATATTTATATAACA+AGG - chr2.4:13829541-13829560 MS.gene43044:CDS 15.0%
!!! AGTTGATATTTATATAACAA+GGG - chr2.4:13829542-13829561 MS.gene43044:CDS 15.0%
!!! TTGCAAGATATTTTTTTTAT+AGG + chr2.4:13829265-13829284 None:intergenic 15.0%
!!! AAAATGCAGGTTTTAAAAAA+AGG + chr2.4:13829119-13829138 None:intergenic 20.0%
!!! TTATTTGTTTCTTTGAATTG+TGG + chr2.4:13828516-13828535 None:intergenic 20.0%
! AAAAAAATATCTTGCAATGC+AGG - chr2.4:13829268-13829287 MS.gene43044:CDS 25.0%
! AAAAATTAAGAGCAATGAGA+AGG - chr2.4:13829662-13829681 MS.gene43044:CDS 25.0%
! AATGTTGAAAAATCGTGAAT+CGG - chr2.4:13828920-13828939 MS.gene43044:CDS 25.0%
! CTTGATTTCGCAATAAATTA+TGG - chr2.4:13829055-13829074 MS.gene43044:CDS 25.0%
! TAACAACTTGCAATATTCAA+TGG + chr2.4:13828684-13828703 None:intergenic 25.0%
! TTGAATATTGCAAGTTGTTA+TGG - chr2.4:13828684-13828703 MS.gene43044:intron 25.0%
!! CTTTGTTATAGTTCTATGTT+AGG - chr2.4:13828994-13829013 MS.gene43044:CDS 25.0%
!! TGAAAATCTAAAACAAGTTC+TGG - chr2.4:13829340-13829359 MS.gene43044:CDS 25.0%
!!! TCTTGTTTTTTTTTCCTTCA+TGG - chr2.4:13829410-13829429 MS.gene43044:CDS 25.0%
AATAGGAAGAGGATAATTGA+TGG - chr2.4:13828861-13828880 MS.gene43044:intron 30.0%
AATCATAATGGCAATGTTTC+AGG - chr2.4:13828648-13828667 MS.gene43044:intron 30.0%
AGAATGAATTACCAAGTTGT+TGG + chr2.4:13828428-13828447 None:intergenic 30.0%
GAATGAATTACCAAGTTGTT+GGG + chr2.4:13828427-13828446 None:intergenic 30.0%
TAATGTGAATCACAAAATGC+AGG + chr2.4:13829132-13829151 None:intergenic 30.0%
TCTACAACAATTAGATCAAG+AGG - chr2.4:13828185-13828204 MS.gene43044:CDS 30.0%
TGTTATTGTGTGACAACATT+TGG + chr2.4:13828776-13828795 None:intergenic 30.0%
TTGCCATTATGATTCTTGAA+TGG + chr2.4:13828642-13828661 None:intergenic 30.0%
TTGCCATTCAAGAATCATAA+TGG - chr2.4:13828636-13828655 MS.gene43044:intron 30.0%
TTGTCACACAATAACAACTT+AGG - chr2.4:13828780-13828799 MS.gene43044:intron 30.0%
! TTGTTTCTTTGAATTGTGGT+TGG + chr2.4:13828512-13828531 None:intergenic 30.0%
!!! AGTATTGAGTTTTGTTTGCT+TGG + chr2.4:13828249-13828268 None:intergenic 30.0%
AAAGCTTGACTGAATCAAGT+GGG - chr2.4:13828832-13828851 MS.gene43044:intron 35.0%
AACACTTGGAGAAATGAGTT+TGG - chr2.4:13828569-13828588 MS.gene43044:CDS 35.0%
AAGGAATTCATCCATGTTGA+GGG + chr2.4:13828322-13828341 None:intergenic 35.0%
AATCAAGTGGGTGTAGTAAT+AGG - chr2.4:13828844-13828863 MS.gene43044:intron 35.0%
ACTCAATGTGTGTCTAGAAA+TGG - chr2.4:13828738-13828757 MS.gene43044:intron 35.0%
AGAAAACTGTGGATGAAGTT+TGG - chr2.4:13828469-13828488 MS.gene43044:intron 35.0%
ATGTTAGCAACTAGTTACCA+AGG + chr2.4:13829239-13829258 None:intergenic 35.0%
ATTACCAAGTTGTTGGGAAA+CGG + chr2.4:13828421-13828440 None:intergenic 35.0%
CAATAACAACTTAGGAGTGA+AGG - chr2.4:13828788-13828807 MS.gene43044:intron 35.0%
CATTCAACAAAGGCTCAAAA+GGG - chr2.4:13829634-13829653 MS.gene43044:CDS 35.0%
GAGGATTTCTTAGTAAAAGC+TGG - chr2.4:13828591-13828610 MS.gene43044:intron 35.0%
TCAGAAGACATAAACCATGA+AGG + chr2.4:13829427-13829446 None:intergenic 35.0%
TCCAATTTGGAAGAAAACTG+TGG - chr2.4:13828458-13828477 MS.gene43044:intron 35.0%
TGTGATTCACATTAAGCTCA+AGG - chr2.4:13829138-13829157 MS.gene43044:CDS 35.0%
TGTTAAGGCAACCTAAATTG+TGG + chr2.4:13829184-13829203 None:intergenic 35.0%
TTGCAAGTTGTTATGGTTTG+AGG - chr2.4:13828691-13828710 MS.gene43044:intron 35.0%
! ACAGTTTTCTTCCAAATTGG+AGG + chr2.4:13828459-13828478 None:intergenic 35.0%
! TCCACAGTTTTCTTCCAAAT+TGG + chr2.4:13828462-13828481 None:intergenic 35.0%
! TTTTCTTCCAAATTGGAGGA+GGG + chr2.4:13828455-13828474 None:intergenic 35.0%
AAATTATGGTCGAATGCGAC+AGG - chr2.4:13829069-13829088 MS.gene43044:CDS 40.0%
ACTTGGAGAAATGAGTTTGG+AGG - chr2.4:13828572-13828591 MS.gene43044:CDS 40.0%
ATCATGTCTGGTACAAACCT+TGG - chr2.4:13829219-13829238 MS.gene43044:CDS 40.0%
ATGAATTCCTTGCCAGCATA+TGG - chr2.4:13828331-13828350 MS.gene43044:intron 40.0%
CAAAGCTTGACTGAATCAAG+TGG - chr2.4:13828831-13828850 MS.gene43044:intron 40.0%
CAAGGAATTCATCCATGTTG+AGG + chr2.4:13828323-13828342 None:intergenic 40.0%
CTCAAGAAGCAACAAACACT+TGG - chr2.4:13828555-13828574 MS.gene43044:CDS 40.0%
CTTGCATTGGAACTCATCAA+GGG + chr2.4:13828280-13828299 None:intergenic 40.0%
GAAAATCCCATTCCCATTGA+AGG + chr2.4:13828717-13828736 None:intergenic 40.0%
GCATTCAACAAAGGCTCAAA+AGG - chr2.4:13829633-13829652 MS.gene43044:CDS 40.0%
GGCATATACATTAGAGCTAG+AGG - chr2.4:13829289-13829308 MS.gene43044:CDS 40.0%
GGTTTGTACCAGACATGATA+TGG + chr2.4:13829218-13829237 None:intergenic 40.0%
GTCATTAGAACTCCATATGC+TGG + chr2.4:13828346-13828365 None:intergenic 40.0%
TACGTCTGTGACCACAATTT+AGG - chr2.4:13829170-13829189 MS.gene43044:CDS 40.0%
TCTTGCATTGGAACTCATCA+AGG + chr2.4:13828281-13828300 None:intergenic 40.0%
TTGTACCAGACATGATATGG+CGG + chr2.4:13829215-13829234 None:intergenic 40.0%
! ACTTACCTCTTGTTTCCTCT+TGG + chr2.4:13829498-13829517 None:intergenic 40.0%
! GTTTTCTTCCAAATTGGAGG+AGG + chr2.4:13828456-13828475 None:intergenic 40.0%
! TATGGTTTGAGGCCTTCAAT+GGG - chr2.4:13828702-13828721 MS.gene43044:intron 40.0%
! TGAGTGTCTCGCTTCTTTTA+AGG + chr2.4:13828539-13828558 None:intergenic 40.0%
! TTATGGTTTGAGGCCTTCAA+TGG - chr2.4:13828701-13828720 MS.gene43044:intron 40.0%
!! GCAACGAAAGCATTCAACAA+AGG - chr2.4:13829624-13829643 MS.gene43044:CDS 40.0%
AGCTCTTTCCACTCTTGCAT+TGG + chr2.4:13828293-13828312 None:intergenic 45.0%
ATGGCGGTCAAATGCTGTTA+AGG + chr2.4:13829199-13829218 None:intergenic 45.0%
GATGAGTTCCAATGCAAGAG+TGG - chr2.4:13828282-13828301 MS.gene43044:intron 45.0%
GCTTCTGCTTGTTCTTGCAA+TGG + chr2.4:13828213-13828232 None:intergenic 45.0%
GTGGGTGTAGTAATAGGAAG+AGG - chr2.4:13828850-13828869 MS.gene43044:intron 45.0%
TAGAACTCCATATGCTGGCA+AGG + chr2.4:13828341-13828360 None:intergenic 45.0%
TGAGACCAAGAGGAAACAAG+AGG - chr2.4:13829490-13829509 MS.gene43044:CDS 45.0%
TGCAAGAGTGGAAAGAGCTT+TGG - chr2.4:13828294-13828313 MS.gene43044:intron 45.0%
TTGAGGCCTTCAATGGGAAT+GGG - chr2.4:13828708-13828727 MS.gene43044:intron 45.0%
TTTGACCGCCATATCATGTC+TGG - chr2.4:13829207-13829226 MS.gene43044:CDS 45.0%
! AGGAGTGAAGGATTTTGCTG+TGG - chr2.4:13828800-13828819 MS.gene43044:intron 45.0%
! TTTGAGGCCTTCAATGGGAA+TGG - chr2.4:13828707-13828726 MS.gene43044:intron 45.0%
CACACCGTTTCCCAACAACT+TGG - chr2.4:13828414-13828433 MS.gene43044:intron 50.0%
CTTCGCTCCACTACAACTTC+AGG + chr2.4:13828891-13828910 None:intergenic 50.0%
GAAGGCCTATAAGCACAACC+TGG - chr2.4:13829680-13829699 MS.gene43044:CDS 50.0%
GAATTGTGAAGCGACAGCGA+AGG + chr2.4:13829036-13829055 None:intergenic 50.0%
TCGTTCTCGAGCAAGAAGAC+AGG - chr2.4:13828947-13828966 MS.gene43044:CDS 50.0%
TCTCTGTCCCTCCTCCAATT+TGG - chr2.4:13828445-13828464 MS.gene43044:intron 50.0%
TGGTCCTCCTGAAGTTGTAG+TGG - chr2.4:13828881-13828900 MS.gene43044:intron 50.0%
! CTGAAGTTGTAGTGGAGCGA+AGG - chr2.4:13828889-13828908 MS.gene43044:intron 50.0%
! GAGCTTTGGTTCCCTCAACA+TGG - chr2.4:13828308-13828327 MS.gene43044:intron 50.0%
AAGGTCTGTGACCGTGATCG+AGG + chr2.4:13829100-13829119 None:intergenic 55.0%
AGGCTGAAGCTGAGACCAAG+AGG - chr2.4:13829480-13829499 MS.gene43044:CDS 55.0%
CGCTCCACTACAACTTCAGG+AGG + chr2.4:13828888-13828907 None:intergenic 55.0%
GACAGGTTCAGCCTCGATCA+CGG - chr2.4:13829086-13829105 MS.gene43044:CDS 55.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 13828180 13829705 13828180 ID=MS.gene43044
chr2.4 mRNA 13828180 13829705 13828180 ID=MS.gene43044.t1;Parent=MS.gene43044
chr2.4 exon 13828917 13829705 13828917 ID=MS.gene43044.t1.exon1;Parent=MS.gene43044.t1
chr2.4 CDS 13828917 13829705 13828917 ID=cds.MS.gene43044.t1;Parent=MS.gene43044.t1
chr2.4 exon 13828524 13828595 13828524 ID=MS.gene43044.t1.exon2;Parent=MS.gene43044.t1
chr2.4 CDS 13828524 13828595 13828524 ID=cds.MS.gene43044.t1;Parent=MS.gene43044.t1
chr2.4 exon 13828374 13828403 13828374 ID=MS.gene43044.t1.exon3;Parent=MS.gene43044.t1
chr2.4 CDS 13828374 13828403 13828374 ID=cds.MS.gene43044.t1;Parent=MS.gene43044.t1
chr2.4 exon 13828180 13828266 13828180 ID=MS.gene43044.t1.exon4;Parent=MS.gene43044.t1
chr2.4 CDS 13828180 13828266 13828180 ID=cds.MS.gene43044.t1;Parent=MS.gene43044.t1
Gene Sequence

>MS.gene43044

ATGGCTCTACAACAATTAGATCAAGAGGTTCCATTGCAAGAACAAGCAGAAGCTACATTTTCTCAACCAAGCAAACAAAACTCAATACTCTCACTCACCCTTGATGAGTTCCAATGCAAGAGTGGAAAGAGCTTTGGTTCCCTCAACATGGATGAATTCCTTGCCAGCATATGGAGTTCTAATGACGAAGCTACAACTCAAACTCAAAATGCTAAAAATGTTGCAACAACAGAACACACCGTTTCCCAACAACTTGGTAATTCATTCTCTGTCCCTCCTCCAATTTGGAAGAAAACTGTGGATGAAGTTTGGTCTGAGATTCATAAAAACCAACCACAATTCAAAGAAACAAATAACCTTAAAAGAAGCGAGACACTCAAGAAGCAACAAACACTTGGAGAAATGAGTTTGGAGGATTTCTTAGTAAAAGCTGGAGTAGTACAACAATCATCAGCATTGCCATTCAAGAATCATAATGGCAATGTTTCAGGTAATATGAGACCATTGAATATTGCAAGTTGTTATGGTTTGAGGCCTTCAATGGGAATGGGATTTTCTACTCAATGTGTGTCTAGAAATGGTTTTGCAACATACCAAATGTTGTCACACAATAACAACTTAGGAGTGAAGGATTTTGCTGTGGAGAAATGTCAAAGCTTGACTGAATCAAGTGGGTGTAGTAATAGGAAGAGGATAATTGATGGTCCTCCTGAAGTTGTAGTGGAGCGAAGGCAACGTAGAATGTTGAAAAATCGTGAATCGGCTGCTCGTTCTCGAGCAAGAAGACAGGTTTTTGTGTTCATCATACTTCACTCTTTGTTATAGTTCTATGTTAGGTTTAAAGTTGCAGTTACCTTCGCTGTCGCTTCACAATTCTTGATTTCGCAATAAATTATGGTCGAATGCGACAGGTTCAGCCTCGATCACGGTCACAGACCTTTTTTTAAAACCTGCATTTTGTGATTCACATTAAGCTCAAGGTTTTAAATATACGTCTGTGACCACAATTTAGGTTGCCTTAACAGCATTTGACCGCCATATCATGTCTGGTACAAACCTTGGTAACTAGTTGCTAACATTTGCCTATAAAAAAAATATCTTGCAATGCAGGCATATACATTAGAGCTAGAGGCAGAGCTGAATCTGCTAAAAGAAGAGAATGAAAATCTAAAACAAGTTCTGGTAAACAATACTGAAATTCAATATTCTGTTCTTTTTTTCTTTCTTATTTCTTGTTTTTTTTTCCTTCATGGTTTATGTCTTCTGATGCTTAACATATATTTCTATCTAAATATGAAATAGGCTGAAGCTGAGACCAAGAGGAAACAAGAGGTAAGTGATTGATTATATGTTTCAAATATAAGTTGATATTTATATAACAAGGGCTAATATTACTAACATCATTGTGAATGTTTGTTTATTATTATATATTGCTACAGCTTTTGCAACGAAAGCATTCAACAAAGGCTCAAAAGGGCGCAGAAAAATTAAGAGCAATGAGAAGGCCTATAAGCACAACCTGGTGA
Protein sequence

>MS.gene43044.t1

MALQQLDQEVPLQEQAEATFSQPSKQNSILSLTLDEFQCKSGKSFGSLNMDEFLASIWSSNDEATTQTQNAKNVATTEHTVSQQLGNSFSVPPPIWKKTVDEVWSEIHKNQPQFKETNNLKRSETLKKQQTLGEMSLEDFLVKAGVVQQSSALPFKNHNGNVSGNMRPLNIASCYGLRPSMGMGFSTQCVSRNGFATYQMLSHNNNLGVKDFAVEKCQSLTESSGCSNRKRIIDGPPEVVVERRQRRMLKNRESAARSRARRQAYTLELEAELNLLKEENENLKQVLAEAETKRKQELLQRKHSTKAQKGAEKLRAMRRPISTTW