Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43228.t1 | XP_013457844.1 | 93.5 | 294 | 8 | 5 | 1 | 290 | 1 | 287 | 9.50E-141 | 509.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43228.t1 | Q2V9B0 | 63.5 | 189 | 65 | 3 | 2 | 189 | 10 | 195 | 1.1e-52 | 208.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43228.t1 | A0A072V1C4 | 93.5 | 294 | 8 | 5 | 1 | 290 | 1 | 287 | 6.9e-141 | 509.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene43228.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43228.t1 | MTR_4g107230 | 92.517 | 294 | 11 | 5 | 1 | 290 | 1 | 287 | 1.82e-175 | 486 |
| MS.gene43228.t1 | MTR_5g037080 | 56.757 | 185 | 47 | 5 | 6 | 175 | 19 | 185 | 1.15e-49 | 167 |
| MS.gene43228.t1 | MTR_4g100630 | 57.746 | 142 | 52 | 4 | 18 | 155 | 25 | 162 | 2.86e-47 | 161 |
| MS.gene43228.t1 | MTR_2g100930 | 43.684 | 190 | 67 | 5 | 3 | 167 | 15 | 189 | 1.11e-42 | 150 |
| MS.gene43228.t1 | MTR_0036s0260 | 91.176 | 68 | 6 | 0 | 88 | 155 | 28 | 95 | 3.43e-38 | 134 |
| MS.gene43228.t1 | MTR_6g092540 | 51.020 | 147 | 56 | 4 | 13 | 152 | 24 | 161 | 8.62e-38 | 135 |
| MS.gene43228.t1 | MTR_2g090305 | 88.235 | 68 | 8 | 0 | 88 | 155 | 28 | 95 | 6.33e-36 | 127 |
| MS.gene43228.t1 | MTR_3g462790 | 61.702 | 94 | 32 | 1 | 76 | 165 | 135 | 228 | 1.97e-34 | 127 |
| MS.gene43228.t1 | MTR_8g101650 | 73.239 | 71 | 18 | 1 | 82 | 152 | 99 | 168 | 4.55e-34 | 125 |
| MS.gene43228.t1 | MTR_4g111975 | 71.622 | 74 | 21 | 0 | 81 | 154 | 131 | 204 | 6.45e-34 | 125 |
| MS.gene43228.t1 | MTR_1g111830 | 59.223 | 103 | 40 | 2 | 81 | 181 | 117 | 219 | 1.94e-33 | 122 |
| MS.gene43228.t1 | MTR_5g069710 | 65.854 | 82 | 28 | 0 | 77 | 158 | 121 | 202 | 1.36e-32 | 122 |
| MS.gene43228.t1 | MTR_7g067080 | 49.138 | 116 | 56 | 1 | 76 | 188 | 128 | 243 | 7.64e-32 | 120 |
| MS.gene43228.t1 | MTR_5g081860 | 61.176 | 85 | 31 | 1 | 76 | 158 | 113 | 197 | 6.71e-30 | 114 |
| MS.gene43228.t1 | MTR_3g104370 | 53.933 | 89 | 38 | 1 | 70 | 155 | 73 | 161 | 3.75e-27 | 105 |
| MS.gene43228.t1 | MTR_8g063600 | 60.811 | 74 | 27 | 1 | 82 | 153 | 100 | 173 | 5.50e-25 | 101 |
| MS.gene43228.t1 | MTR_5g027570 | 32.500 | 160 | 78 | 4 | 48 | 177 | 27 | 186 | 7.82e-24 | 97.1 |
| MS.gene43228.t1 | MTR_5g027550 | 45.631 | 103 | 49 | 3 | 70 | 166 | 60 | 161 | 9.85e-22 | 91.7 |
| MS.gene43228.t1 | MTR_5g088010 | 44.944 | 89 | 43 | 2 | 82 | 164 | 54 | 142 | 2.52e-20 | 88.2 |
| MS.gene43228.t1 | MTR_8g063870 | 44.545 | 110 | 51 | 3 | 90 | 189 | 94 | 203 | 3.90e-20 | 88.2 |
| MS.gene43228.t1 | MTR_1g048660 | 56.250 | 64 | 28 | 0 | 89 | 152 | 13 | 76 | 1.96e-19 | 81.6 |
| MS.gene43228.t1 | MTR_1g033620 | 46.875 | 96 | 46 | 1 | 104 | 194 | 21 | 116 | 3.20e-19 | 85.1 |
| MS.gene43228.t1 | MTR_5g088060 | 48.148 | 81 | 36 | 2 | 90 | 164 | 274 | 354 | 1.28e-18 | 85.9 |
| MS.gene43228.t1 | MTR_5g488160 | 48.148 | 81 | 36 | 2 | 90 | 164 | 274 | 354 | 1.28e-18 | 85.9 |
| MS.gene43228.t1 | MTR_4g015130 | 64.286 | 56 | 20 | 0 | 98 | 153 | 3 | 58 | 4.89e-18 | 77.4 |
| MS.gene43228.t1 | MTR_1g083180 | 51.429 | 70 | 30 | 2 | 90 | 156 | 63 | 131 | 3.93e-15 | 72.4 |
| MS.gene43228.t1 | MTR_5g075760 | 36.752 | 117 | 64 | 4 | 59 | 173 | 78 | 186 | 1.96e-14 | 71.2 |
| MS.gene43228.t1 | MTR_3g070110 | 48.611 | 72 | 30 | 1 | 90 | 154 | 97 | 168 | 3.32e-13 | 67.8 |
| MS.gene43228.t1 | MTR_5g075790 | 43.023 | 86 | 41 | 3 | 90 | 173 | 115 | 194 | 6.79e-13 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43228.t1 | AT1G74840 | 56.579 | 228 | 78 | 8 | 8 | 229 | 16 | 228 | 3.14e-60 | 192 |
| MS.gene43228.t1 | AT1G74840 | 63.542 | 192 | 60 | 6 | 8 | 194 | 16 | 202 | 1.18e-59 | 190 |
| MS.gene43228.t1 | AT1G19000 | 55.769 | 208 | 69 | 5 | 1 | 194 | 4 | 202 | 2.51e-53 | 176 |
| MS.gene43228.t1 | AT1G19000 | 55.769 | 208 | 69 | 5 | 1 | 194 | 4 | 202 | 2.51e-53 | 176 |
| MS.gene43228.t1 | AT5G47390 | 54.658 | 161 | 63 | 3 | 18 | 173 | 25 | 180 | 7.71e-52 | 174 |
| MS.gene43228.t1 | AT1G70000 | 61.988 | 171 | 43 | 6 | 5 | 168 | 23 | 178 | 2.83e-50 | 167 |
| MS.gene43228.t1 | AT1G70000 | 61.988 | 171 | 43 | 6 | 5 | 168 | 23 | 178 | 2.83e-50 | 167 |
| MS.gene43228.t1 | AT3G16350 | 44.550 | 211 | 87 | 7 | 18 | 207 | 49 | 250 | 1.17e-39 | 142 |
| MS.gene43228.t1 | AT5G58900 | 51.304 | 115 | 50 | 1 | 76 | 190 | 129 | 237 | 3.20e-34 | 126 |
| MS.gene43228.t1 | AT1G49010 | 72.973 | 74 | 20 | 0 | 81 | 154 | 127 | 200 | 3.93e-34 | 126 |
| MS.gene43228.t1 | AT2G38090 | 58.763 | 97 | 40 | 0 | 65 | 161 | 118 | 214 | 7.03e-34 | 125 |
| MS.gene43228.t1 | AT5G04760 | 65.116 | 86 | 29 | 1 | 77 | 161 | 88 | 173 | 1.46e-33 | 122 |
| MS.gene43228.t1 | AT5G61620 | 39.362 | 188 | 83 | 6 | 4 | 177 | 22 | 192 | 4.44e-33 | 124 |
| MS.gene43228.t1 | AT5G08520 | 70.270 | 74 | 22 | 0 | 81 | 154 | 111 | 184 | 8.70e-33 | 122 |
| MS.gene43228.t1 | AT5G56840 | 57.282 | 103 | 32 | 3 | 63 | 164 | 73 | 164 | 6.00e-32 | 118 |
| MS.gene43228.t1 | AT5G01200 | 64.865 | 74 | 26 | 0 | 81 | 154 | 139 | 212 | 2.56e-29 | 112 |
| MS.gene43228.t1 | AT5G05790 | 61.250 | 80 | 31 | 0 | 75 | 154 | 118 | 197 | 2.76e-29 | 112 |
| MS.gene43228.t1 | AT5G05790 | 61.250 | 80 | 31 | 0 | 75 | 154 | 118 | 197 | 2.76e-29 | 112 |
| MS.gene43228.t1 | AT3G11280 | 61.250 | 80 | 31 | 0 | 75 | 154 | 114 | 193 | 3.35e-29 | 112 |
| MS.gene43228.t1 | AT3G11280 | 61.250 | 80 | 31 | 0 | 75 | 154 | 114 | 193 | 3.35e-29 | 112 |
| MS.gene43228.t1 | AT3G10580 | 60.000 | 70 | 26 | 1 | 84 | 153 | 91 | 158 | 4.86e-23 | 95.5 |
| MS.gene43228.t1 | AT3G10580 | 60.000 | 70 | 26 | 1 | 84 | 153 | 91 | 158 | 7.86e-23 | 95.9 |
| MS.gene43228.t1 | AT4G09450 | 50.000 | 94 | 46 | 1 | 69 | 161 | 71 | 164 | 1.14e-22 | 93.2 |
| MS.gene43228.t1 | AT5G23650 | 58.333 | 72 | 30 | 0 | 82 | 153 | 114 | 185 | 2.34e-22 | 95.5 |
| MS.gene43228.t1 | AT3G10590 | 46.512 | 86 | 45 | 1 | 76 | 161 | 99 | 183 | 3.35e-19 | 84.0 |
Find 69 sgRNAs with CRISPR-Local
Find 101 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGTTCGCGGTCGCGGTTTC+TGG | 0.130907 | 8.4:+19650259 | None:intergenic |
| AACTCATATACTGACATAAA+AGG | 0.288173 | 8.4:+19649285 | None:intergenic |
| ATGCCATGTTTCAATAATAA+TGG | 0.319591 | 8.4:-19649024 | MS.gene43228:CDS |
| ATCAGACACAATGGAAGCTT+TGG | 0.326101 | 8.4:+19649149 | None:intergenic |
| GGAAGAGCACAAGCTGTTCT+TGG | 0.356599 | 8.4:-19650116 | MS.gene43228:CDS |
| TTGACCTGTTCTTCCTCCAT+TGG | 0.357105 | 8.4:+19649369 | None:intergenic |
| AATTGAATAGATTGTTGGTT+TGG | 0.361654 | 8.4:+19649196 | None:intergenic |
| GTCATCGGCGGAGGCGTAAC+CGG | 0.383661 | 8.4:+19650301 | None:intergenic |
| CTCGTTTACGTTCGCGGTCG+CGG | 0.408987 | 8.4:+19650252 | None:intergenic |
| TGGAACCTCGTTTACGTTCG+CGG | 0.412917 | 8.4:+19650246 | None:intergenic |
| AATTGAATTGAATAGATTGT+TGG | 0.420883 | 8.4:+19649191 | None:intergenic |
| TTGGTTGGATTGCAGAAAGT+TGG | 0.429183 | 8.4:-19650097 | MS.gene43228:CDS |
| TTTATGTCAGTATATGAGTT+GGG | 0.444220 | 8.4:-19649282 | MS.gene43228:CDS |
| ACCGCAGACTCCACCGTCTC+CGG | 0.449707 | 8.4:-19650470 | MS.gene43228:CDS |
| AATTCCAATGGAGGAAGAAC+AGG | 0.463202 | 8.4:-19649373 | MS.gene43228:CDS |
| TCAGACACAATGGAAGCTTT+GGG | 0.470464 | 8.4:+19649150 | None:intergenic |
| AGAAAGTTGGAAAAGGTGAT+TGG | 0.477943 | 8.4:-19650084 | MS.gene43228:CDS |
| TGGAGGGTCAATGGATGAAC+TGG | 0.479134 | 8.4:+19649113 | None:intergenic |
| GGAAAGTGTTGGAGGGTCAA+TGG | 0.479524 | 8.4:+19649104 | None:intergenic |
| GAGCACAAGCTGTTCTTGGT+TGG | 0.483963 | 8.4:-19650112 | MS.gene43228:CDS |
| CCAATGGAAGAACTCACTCT+TGG | 0.488703 | 8.4:-19649243 | MS.gene43228:CDS |
| AGGAACGGCGTCATCGGCGG+AGG | 0.501551 | 8.4:+19650292 | None:intergenic |
| TCCGGCGAATTCATGCTCTT+CGG | 0.514098 | 8.4:-19650452 | MS.gene43228:CDS |
| CCAAGAGTGAGTTCTTCCAT+TGG | 0.515535 | 8.4:+19649243 | None:intergenic |
| GAGCATGAATTCGCCGGAGA+CGG | 0.519327 | 8.4:+19650457 | None:intergenic |
| TTTCCTTCTCGTCCGATCAA+AGG | 0.521674 | 8.4:-19649074 | MS.gene43228:CDS |
| GACCCTCCAACACTTTCCCT+CGG | 0.522607 | 8.4:-19649099 | MS.gene43228:CDS |
| TTGGGATCTGAAACAACAAA+AGG | 0.525424 | 8.4:+19649168 | None:intergenic |
| TGGATCAGGGATTCCGTGGA+CGG | 0.525462 | 8.4:-19650140 | MS.gene43228:intron |
| TGATGATGTCTTCCTTTGAT+CGG | 0.527840 | 8.4:+19649062 | None:intergenic |
| ATGATGTTGTTGTTGTCTTG+AGG | 0.532951 | 8.4:+19650359 | None:intergenic |
| GGTGGTGATATCAAAGAGAC+TGG | 0.540239 | 8.4:+19649952 | None:intergenic |
| TTGTGCTCTTCCTCCGTCCA+CGG | 0.546086 | 8.4:+19650127 | None:intergenic |
| GGATTGCAGAAAGTTGGAAA+AGG | 0.553347 | 8.4:-19650091 | MS.gene43228:CDS |
| AGTCCGAGGGAAAGTGTTGG+AGG | 0.562456 | 8.4:+19649096 | None:intergenic |
| TTCGCGGTCGCGGTTTCTGG+CGG | 0.563265 | 8.4:+19650262 | None:intergenic |
| CATGAATTCGCCGGAGACGG+TGG | 0.565729 | 8.4:+19650460 | None:intergenic |
| TCAGGTATCTGCAATTCCAA+TGG | 0.575185 | 8.4:-19649385 | MS.gene43228:intron |
| CTTCCTTTGATCGGACGAGA+AGG | 0.575650 | 8.4:+19649071 | None:intergenic |
| GCCGGAGACGGTGGAGTCTG+CGG | 0.589898 | 8.4:+19650469 | None:intergenic |
| TTGAGGAACGGCGTCATCGG+CGG | 0.592610 | 8.4:+19650289 | None:intergenic |
| TATCAAAGAGACTGGATCTA+CGG | 0.592657 | 8.4:+19649960 | None:intergenic |
| CGTTAATGAGAGTACTCCAA+TGG | 0.593695 | 8.4:-19649259 | MS.gene43228:CDS |
| TCCGAAGAGCATGAATTCGC+CGG | 0.594213 | 8.4:+19650451 | None:intergenic |
| AGACAACAACAACATCATCA+AGG | 0.604820 | 8.4:-19650354 | MS.gene43228:CDS |
| TCTCCATTATTATTGAAACA+TGG | 0.609269 | 8.4:+19649021 | None:intergenic |
| AACAAAGACGTTATCACCGC+CGG | 0.612643 | 8.4:-19650320 | MS.gene43228:CDS |
| GTGATTGGAGAGGTATCTCA+AGG | 0.614661 | 8.4:-19650069 | MS.gene43228:CDS |
| AATGGATGAACTGGAACTAG+AGG | 0.623042 | 8.4:+19649122 | None:intergenic |
| GAAGAACTCACTCTTGGACA+AGG | 0.624406 | 8.4:-19649237 | MS.gene43228:CDS |
| ATCGGCGGAGGCGTAACCGG+CGG | 0.626944 | 8.4:+19650304 | None:intergenic |
| CAGAAAAGTTACCGTGTCGG+TGG | 0.629241 | 8.4:+19649934 | None:intergenic |
| GGCGATTGAGATTACTTCGG+CGG | 0.629813 | 8.4:+19649987 | None:intergenic |
| CGCGACCGCGAACGTAAACG+AGG | 0.635630 | 8.4:-19650251 | MS.gene43228:intron |
| CTTTGATATCACCACCGACA+CGG | 0.638033 | 8.4:-19649945 | MS.gene43228:intron |
| GTCCGAGGGAAAGTGTTGGA+GGG | 0.638496 | 8.4:+19649097 | None:intergenic |
| GAAAGTCCGAGGGAAAGTGT+TGG | 0.638503 | 8.4:+19649093 | None:intergenic |
| TGCCAGAAAAGTTACCGTGT+CGG | 0.638678 | 8.4:+19649931 | None:intergenic |
| CGGACGAGAAGGAAAGTCCG+AGG | 0.639721 | 8.4:+19649082 | None:intergenic |
| GACGGCGATTGAGATTACTT+CGG | 0.641222 | 8.4:+19649984 | None:intergenic |
| GGTATCTGCAATTCCAATGG+AGG | 0.648622 | 8.4:-19649382 | MS.gene43228:CDS |
| AGAGGTGATATCAGACACAA+TGG | 0.652354 | 8.4:+19649140 | None:intergenic |
| GGACGAGAAGGAAAGTCCGA+GGG | 0.654533 | 8.4:+19649083 | None:intergenic |
| GTTGGAAAAGGTGATTGGAG+AGG | 0.659248 | 8.4:-19650079 | MS.gene43228:CDS |
| GGAGACGGTGGAGTCTGCGG+TGG | 0.660956 | 8.4:+19650472 | None:intergenic |
| ATCAGGGATTCCGTGGACGG+AGG | 0.665588 | 8.4:-19650137 | MS.gene43228:intron |
| GAAAACAAGAACACCTACGC+AGG | 0.669459 | 8.4:-19650038 | MS.gene43228:CDS |
| AGAGACTGGATCTACGGCGA+CGG | 0.684123 | 8.4:+19649966 | None:intergenic |
| GCATGACTTGCAACCTGCGT+AGG | 0.689624 | 8.4:+19650025 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTGATATAAGATTAATATAT+AGG | - | chr8.4:19649823-19649842 | MS.gene43228:intron | 15.0% |
| !!! | CTTTTTTTTTTTTTTTTGTG+TGG | - | chr8.4:19649754-19649773 | MS.gene43228:intron | 15.0% |
| !!! | TAATTTTCTCTCTTATTTAT+TGG | - | chr8.4:19649664-19649683 | MS.gene43228:intron | 15.0% |
| !! | AAGGAAACAAAAAAATACAA+TGG | - | chr8.4:19649723-19649742 | MS.gene43228:intron | 20.0% |
| !! | AATGCTATTAAAGATTGTAA+AGG | - | chr8.4:19649704-19649723 | MS.gene43228:intron | 20.0% |
| !! | AATTGAATTGAATAGATTGT+TGG | + | chr8.4:19650299-19650318 | None:intergenic | 20.0% |
| !! | AGATTTCTTAACAACTATAA+AGG | + | chr8.4:19649784-19649803 | None:intergenic | 20.0% |
| !! | ATAAGATATATATCAACTCT+TGG | + | chr8.4:19649890-19649909 | None:intergenic | 20.0% |
| ! | AACTCATATACTGACATAAA+AGG | + | chr8.4:19650205-19650224 | None:intergenic | 25.0% |
| ! | ATGCCATGTTTCAATAATAA+TGG | - | chr8.4:19650463-19650482 | MS.gene43228:CDS | 25.0% |
| ! | CTTATAATAGTTGATCTATC+TGG | - | chr8.4:19649905-19649924 | MS.gene43228:intron | 25.0% |
| ! | GAAATCTAACAAAACTAGAA+TGG | - | chr8.4:19649797-19649816 | MS.gene43228:intron | 25.0% |
| ! | TAATCAATAGAGTAGGATTA+TGG | - | chr8.4:19649623-19649642 | MS.gene43228:intron | 25.0% |
| ! | TAGTTACTAATCAATAGAGT+AGG | - | chr8.4:19649616-19649635 | MS.gene43228:intron | 25.0% |
| ! | TCTCCATTATTATTGAAACA+TGG | + | chr8.4:19650469-19650488 | None:intergenic | 25.0% |
| ! | TTGTTTATACTTAGTAACAG+AGG | + | chr8.4:19649946-19649965 | None:intergenic | 25.0% |
| ! | TTTATGTCAGTATATGAGTT+GGG | - | chr8.4:19650205-19650224 | MS.gene43228:intron | 25.0% |
| !! | AATTGAATAGATTGTTGGTT+TGG | + | chr8.4:19650294-19650313 | None:intergenic | 25.0% |
| !! | TTTTATGTCAGTATATGAGT+TGG | - | chr8.4:19650204-19650223 | MS.gene43228:intron | 25.0% |
| !!! | GTGATTATCGTTATTGATTT+TGG | - | chr8.4:19649327-19649346 | MS.gene43228:CDS | 25.0% |
| AACAACTTTGTGTTTATGTC+AGG | - | chr8.4:19650084-19650103 | MS.gene43228:CDS | 30.0% | |
| ATGCATTTCAAAGAGTTTAC+TGG | - | chr8.4:19649864-19649883 | MS.gene43228:intron | 30.0% | |
| ATTGAAGAGATTGATCGAAT+TGG | + | chr8.4:19649264-19649283 | None:intergenic | 30.0% | |
| !!! | ATCGTTATTGATTTTGGATC+AGG | - | chr8.4:19649333-19649352 | MS.gene43228:CDS | 30.0% |
| !!! | TCCATTGATTTTTCTAGCTT+CGG | + | chr8.4:19650179-19650198 | None:intergenic | 30.0% |
| !!! | TCGTTATTGATTTTGGATCA+GGG | - | chr8.4:19649334-19649353 | MS.gene43228:CDS | 30.0% |
| AGAAAGTTGGAAAAGGTGAT+TGG | - | chr8.4:19649403-19649422 | MS.gene43228:intron | 35.0% | |
| AGACAACAACAACATCATCA+AGG | - | chr8.4:19649133-19649152 | MS.gene43228:CDS | 35.0% | |
| TATCAAAGAGACTGGATCTA+CGG | + | chr8.4:19649530-19649549 | None:intergenic | 35.0% | |
| TTCGATCAATCTCTTCAATC+TGG | - | chr8.4:19649265-19649284 | MS.gene43228:CDS | 35.0% | |
| ! | ATGATGTTGTTGTTGTCTTG+AGG | + | chr8.4:19649131-19649150 | None:intergenic | 35.0% |
| ! | TGATGATGTCTTCCTTTGAT+CGG | + | chr8.4:19650428-19650447 | None:intergenic | 35.0% |
| ! | TTGGGATCTGAAACAACAAA+AGG | + | chr8.4:19650322-19650341 | None:intergenic | 35.0% |
| !!! | ATTGATTTTTCTAGCTTCGG+GGG | + | chr8.4:19650176-19650195 | None:intergenic | 35.0% |
| !!! | CATTGATTTTTCTAGCTTCG+GGG | + | chr8.4:19650177-19650196 | None:intergenic | 35.0% |
| !!! | CCATTGATTTTTCTAGCTTC+GGG | + | chr8.4:19650178-19650197 | None:intergenic | 35.0% |
| AATGGATGAACTGGAACTAG+AGG | + | chr8.4:19650368-19650387 | None:intergenic | 40.0% | |
| AATTCCAATGGAGGAAGAAC+AGG | - | chr8.4:19650114-19650133 | MS.gene43228:CDS | 40.0% | |
| AGAGGTGATATCAGACACAA+TGG | + | chr8.4:19650350-19650369 | None:intergenic | 40.0% | |
| ATCAGACACAATGGAAGCTT+TGG | + | chr8.4:19650341-19650360 | None:intergenic | 40.0% | |
| CCCGAAGCTAGAAAAATCAA+TGG | - | chr8.4:19650175-19650194 | MS.gene43228:intron | 40.0% | |
| GGATTGCAGAAAGTTGGAAA+AGG | - | chr8.4:19649396-19649415 | MS.gene43228:intron | 40.0% | |
| TCAGACACAATGGAAGCTTT+GGG | + | chr8.4:19650340-19650359 | None:intergenic | 40.0% | |
| TCAGGTATCTGCAATTCCAA+TGG | - | chr8.4:19650102-19650121 | MS.gene43228:CDS | 40.0% | |
| TTGGTTGGATTGCAGAAAGT+TGG | - | chr8.4:19649390-19649409 | MS.gene43228:intron | 40.0% | |
| !! | CGTTAATGAGAGTACTCCAA+TGG | - | chr8.4:19650228-19650247 | MS.gene43228:intron | 40.0% |
| AACAAAGACGTTATCACCGC+CGG | - | chr8.4:19649167-19649186 | MS.gene43228:CDS | 45.0% | |
| CCAAGAGTGAGTTCTTCCAT+TGG | + | chr8.4:19650247-19650266 | None:intergenic | 45.0% | |
| CCAATGGAAGAACTCACTCT+TGG | - | chr8.4:19650244-19650263 | MS.gene43228:intron | 45.0% | |
| CTTTGATATCACCACCGACA+CGG | - | chr8.4:19649542-19649561 | MS.gene43228:intron | 45.0% | |
| GAAAACAAGAACACCTACGC+AGG | - | chr8.4:19649449-19649468 | MS.gene43228:intron | 45.0% | |
| GAAGAACTCACTCTTGGACA+AGG | - | chr8.4:19650250-19650269 | MS.gene43228:intron | 45.0% | |
| GACGGCGATTGAGATTACTT+CGG | + | chr8.4:19649506-19649525 | None:intergenic | 45.0% | |
| GGTATCTGCAATTCCAATGG+AGG | - | chr8.4:19650105-19650124 | MS.gene43228:CDS | 45.0% | |
| GGTGGTGATATCAAAGAGAC+TGG | + | chr8.4:19649538-19649557 | None:intergenic | 45.0% | |
| GTTGGAAAAGGTGATTGGAG+AGG | - | chr8.4:19649408-19649427 | MS.gene43228:intron | 45.0% | |
| TGCCAGAAAAGTTACCGTGT+CGG | + | chr8.4:19649559-19649578 | None:intergenic | 45.0% | |
| TTGACCTGTTCTTCCTCCAT+TGG | + | chr8.4:19650121-19650140 | None:intergenic | 45.0% | |
| TTTCCTTCTCGTCCGATCAA+AGG | - | chr8.4:19650413-19650432 | MS.gene43228:CDS | 45.0% | |
| ! | ATTTTGGATCAGGGATTCCG+TGG | - | chr8.4:19649343-19649362 | MS.gene43228:CDS | 45.0% |
| !! | GTGATTGGAGAGGTATCTCA+AGG | - | chr8.4:19649418-19649437 | MS.gene43228:intron | 45.0% |
| CAGAAAAGTTACCGTGTCGG+TGG | + | chr8.4:19649556-19649575 | None:intergenic | 50.0% | |
| CTTCCTTTGATCGGACGAGA+AGG | + | chr8.4:19650419-19650438 | None:intergenic | 50.0% | |
| GAGCACAAGCTGTTCTTGGT+TGG | - | chr8.4:19649375-19649394 | MS.gene43228:CDS | 50.0% | |
| GGCGATTGAGATTACTTCGG+CGG | + | chr8.4:19649503-19649522 | None:intergenic | 50.0% | |
| TCCGGCGAATTCATGCTCTT+CGG | - | chr8.4:19649035-19649054 | MS.gene43228:CDS | 50.0% | |
| TGGAACCTCGTTTACGTTCG+CGG | + | chr8.4:19649244-19649263 | None:intergenic | 50.0% | |
| TGGAGGGTCAATGGATGAAC+TGG | + | chr8.4:19650377-19650396 | None:intergenic | 50.0% | |
| ! | CACCGACACGGTAACTTTTC+TGG | - | chr8.4:19649554-19649573 | MS.gene43228:intron | 50.0% |
| ! | GAAAGTCCGAGGGAAAGTGT+TGG | + | chr8.4:19650397-19650416 | None:intergenic | 50.0% |
| ! | GGAAGAGCACAAGCTGTTCT+TGG | - | chr8.4:19649371-19649390 | MS.gene43228:CDS | 50.0% |
| ! | TCCGAAGAGCATGAATTCGC+CGG | + | chr8.4:19649039-19649058 | None:intergenic | 50.0% |
| !! | GGAAAGTGTTGGAGGGTCAA+TGG | + | chr8.4:19650386-19650405 | None:intergenic | 50.0% |
| !!! | GTTTTGAGGAACGGCGTCAT+CGG | + | chr8.4:19649204-19649223 | None:intergenic | 50.0% |
| !!! | TCTGGCGGAGTTTTGAGGAA+CGG | + | chr8.4:19649213-19649232 | None:intergenic | 50.0% |
| AGAGACTGGATCTACGGCGA+CGG | + | chr8.4:19649524-19649543 | None:intergenic | 55.0% | |
| GACCCTCCAACACTTTCCCT+CGG | - | chr8.4:19650388-19650407 | MS.gene43228:CDS | 55.0% | |
| GAGCATGAATTCGCCGGAGA+CGG | + | chr8.4:19649033-19649052 | None:intergenic | 55.0% | |
| GGACGAGAAGGAAAGTCCGA+GGG | + | chr8.4:19650407-19650426 | None:intergenic | 55.0% | |
| TGGATCAGGGATTCCGTGGA+CGG | - | chr8.4:19649347-19649366 | MS.gene43228:CDS | 55.0% | |
| TTGTGCTCTTCCTCCGTCCA+CGG | + | chr8.4:19649363-19649382 | None:intergenic | 55.0% | |
| ! | GCATGACTTGCAACCTGCGT+AGG | + | chr8.4:19649465-19649484 | None:intergenic | 55.0% |
| !! | AGTCCGAGGGAAAGTGTTGG+AGG | + | chr8.4:19650394-19650413 | None:intergenic | 55.0% |
| !! | GTCCGAGGGAAAGTGTTGGA+GGG | + | chr8.4:19650393-19650412 | None:intergenic | 55.0% |
| !!! | CGGTTTCTGGCGGAGTTTTG+AGG | + | chr8.4:19649218-19649237 | None:intergenic | 55.0% |
| ATCAGGGATTCCGTGGACGG+AGG | - | chr8.4:19649350-19649369 | MS.gene43228:CDS | 60.0% | |
| CATGAATTCGCCGGAGACGG+TGG | + | chr8.4:19649030-19649049 | None:intergenic | 60.0% | |
| CGGACGAGAAGGAAAGTCCG+AGG | + | chr8.4:19650408-19650427 | None:intergenic | 60.0% | |
| CTCGTTTACGTTCGCGGTCG+CGG | + | chr8.4:19649238-19649257 | None:intergenic | 60.0% | |
| TTGAGGAACGGCGTCATCGG+CGG | + | chr8.4:19649201-19649220 | None:intergenic | 60.0% | |
| !! | TTCTAGCTTCGGGGGCTGCA+GGG | + | chr8.4:19650168-19650187 | None:intergenic | 60.0% |
| !! | TTTCTAGCTTCGGGGGCTGC+AGG | + | chr8.4:19650169-19650188 | None:intergenic | 60.0% |
| ACCGCAGACTCCACCGTCTC+CGG | - | chr8.4:19649017-19649036 | MS.gene43228:CDS | 65.0% | |
| ACGTTCGCGGTCGCGGTTTC+TGG | + | chr8.4:19649231-19649250 | None:intergenic | 65.0% | |
| CGCGACCGCGAACGTAAACG+AGG | - | chr8.4:19649236-19649255 | MS.gene43228:CDS | 65.0% | |
| ! | GTCATCGGCGGAGGCGTAAC+CGG | + | chr8.4:19649189-19649208 | None:intergenic | 65.0% |
| ! | TTCGCGGTCGCGGTTTCTGG+CGG | + | chr8.4:19649228-19649247 | None:intergenic | 65.0% |
| AGGAACGGCGTCATCGGCGG+AGG | + | chr8.4:19649198-19649217 | None:intergenic | 70.0% | |
| GCCGGAGACGGTGGAGTCTG+CGG | + | chr8.4:19649021-19649040 | None:intergenic | 70.0% | |
| GGAGACGGTGGAGTCTGCGG+TGG | + | chr8.4:19649018-19649037 | None:intergenic | 70.0% | |
| ! | ATCGGCGGAGGCGTAACCGG+CGG | + | chr8.4:19649186-19649205 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 19648999 | 19650510 | 19648999 | ID=MS.gene43228 |
| chr8.4 | mRNA | 19648999 | 19650510 | 19648999 | ID=MS.gene43228.t1;Parent=MS.gene43228 |
| chr8.4 | exon | 19650252 | 19650510 | 19650252 | ID=MS.gene43228.t1.exon1;Parent=MS.gene43228.t1 |
| chr8.4 | CDS | 19650252 | 19650510 | 19650252 | ID=cds.MS.gene43228.t1;Parent=MS.gene43228.t1 |
| chr8.4 | exon | 19649946 | 19650154 | 19649946 | ID=MS.gene43228.t1.exon2;Parent=MS.gene43228.t1 |
| chr8.4 | CDS | 19649946 | 19650154 | 19649946 | ID=cds.MS.gene43228.t1;Parent=MS.gene43228.t1 |
| chr8.4 | exon | 19648999 | 19649403 | 19648999 | ID=MS.gene43228.t1.exon3;Parent=MS.gene43228.t1 |
| chr8.4 | CDS | 19648999 | 19649403 | 19648999 | ID=cds.MS.gene43228.t1;Parent=MS.gene43228.t1 |
| Gene Sequence |
| Protein sequence |
