AlfalfaGEDB | MS.gene43263

M. sativa cultivar XinJiangDaYe / MS.gene43263

KEGG: -
GO: GO:0000976 GO:0000981 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0035326 GO:0043565 GO:0044212 GO:0045893 GO:0045935 GO:0045944 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene43263.t1	XP_013457839.1	80.9	293	18	1	1	293	1	255	1.10E-104	389.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene43263.t1	Q9FJK3	29.1	110	74	3	1	109	1	107	2.0e-06	54.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene43263.t1	A0A072V1C0	80.9	293	18	1	1	293	1	255	8.0e-105	389.8

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene43263.t1	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene43263.t1	MTR_4g107170	78.498	293	25	2	1	293	1	255	1.30e-165	460
MS.gene43263.t1	MTR_4g045977	47.801	341	114	6	1	293	1	325	8.56e-95	285
MS.gene43263.t1	MTR_2g049610	57.692	156	63	1	1	156	1	153	1.01e-58	188
MS.gene43263.t1	MTR_2g049630	46.939	196	97	5	1	191	1	194	4.50e-51	172
MS.gene43263.t1	MTR_2g049530	49.383	162	79	3	3	162	5	165	1.55e-46	155
MS.gene43263.t1	MTR_1g115290	61.538	117	43	1	38	152	2	118	2.55e-44	148
MS.gene43263.t1	MTR_6g018920	38.065	155	93	1	1	152	1	155	7.73e-35	129
MS.gene43263.t1	MTR_1g114730	41.290	155	88	1	1	152	1	155	2.12e-34	128
MS.gene43263.t1	MTR_6g005440	39.103	156	92	1	1	153	1	156	1.18e-33	125
MS.gene43263.t1	MTR_6g005450	36.774	155	95	1	1	152	1	155	9.14e-29	112

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene43263.t1	AT5G55690	30.464	151	94	2	1	147	1	144	5.37e-16	76.6
MS.gene43263.t1	AT5G55690	30.464	151	94	2	1	147	1	144	5.37e-16	76.6

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Find 53 sgRNAs with CRISPR-Local

Find 57 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAAGATTAAGAAAGTG+CGG	0.626571	8.4:+20121221	MS.gene43263:CDS
AAACCAACTTAGTGGGCTTG+TGG	0.552156	8.4:+20121468	MS.gene43263:CDS
AACCCAACTTAGTGGGCTTG+TGG	0.535603	8.4:+20121579	MS.gene43263:CDS
AACTTAGTGGGCTTGTGGAG+AGG	0.584533	8.4:+20121473	MS.gene43263:CDS
AACTTGTTGATCTTGATGAC+TGG	0.515181	8.4:+20121704	MS.gene43263:CDS
AAGTTGGGTAGATCTTACTG+AGG	0.750378	8.4:-20121252	None:intergenic
AATCATCTCACATATATCCA+AGG	0.609547	8.4:-20121404	None:intergenic
ACAAATAGAAACTAGCACCT+TGG	0.593239	8.4:+20121387	MS.gene43263:CDS
ACAATCTCACTCATATAATC+AGG	0.433010	8.4:-20121625	None:intergenic
ACCATCTCACTTGTATAATC+AGG	0.418843	8.4:-20121514	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATCATCTCACATATATCCA+AGG	-	chr8.4:20121407-20121426	None:intergenic	30.0%
ACAATCTCACTCATATAATC+AGG	-	chr8.4:20121628-20121647	None:intergenic	30.0%
ACTTTCAAACAAAGAAAGCA+TGG	+	chr8.4:20120980-20120999	MS.gene43263:CDS	30.0%
ATAATATTGAACCTACGACA+TGG	+	chr8.4:20121080-20121099	MS.gene43263:CDS	30.0%
TATAATCAGGATCAACAACT+TGG	-	chr8.4:20121504-20121523	None:intergenic	30.0%
TCATCCAAGTTACTAAAATG+TGG	-	chr8.4:20121283-20121302	None:intergenic	30.0%
TCCTGAGATATTTGATGTTA+AGG	+	chr8.4:20121168-20121187	MS.gene43263:CDS	30.0%
TCCTTAACATCAAATATCTC+AGG	-	chr8.4:20121172-20121191	None:intergenic	30.0%
TGATTATATGAGTGAGATTG+TGG	+	chr8.4:20121627-20121646	MS.gene43263:CDS	30.0%
ACAAATAGAAACTAGCACCT+TGG	+	chr8.4:20121387-20121406	MS.gene43263:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	20120923	20121804	20120923	ID=MS.gene43263
chr8.4	mRNA	20120923	20121804	20120923	ID=MS.gene43263.t1;Parent=MS.gene43263
chr8.4	exon	20120923	20121804	20120923	ID=MS.gene43263.t1.exon1;Parent=MS.gene43263.t1
chr8.4	CDS	20120923	20121804	20120923	ID=cds.MS.gene43263.t1;Parent=MS.gene43263.t1

Gene Sequence

>MS.gene43263

ATGGGTCGCGCAAAAATACCTATGAAATACATCCAAAGTGCGAAATCTCGCAATATAACTTTCAAACAAAGAAAGCATGGATTAGAAAAGAAAATTTCTGAATTTTGTAAGAAGTCTGGAGCAAAGGCTTGCTTTATTGTGTATGATGGTGATCATAATAATATTGAACCTACGACATGGCCAGAAGACCTTACAAGTGTAAACTCCTTGCTTCAAGAGTATCAGAATCAAAAGATTGAGAAAACTCCTGAGATATTTGATGTTAAGGACTACTTTGAAAATAAGACAGAAAAGGTTGAAACAAAGATTAAGAAAGTGCGGAGAGATATCCTCAGTAAGATCTACCCAACTTGGCATCCACATTTTAGTAACTTGGATGAGAATCAACTCAGAGACTTCATTGCTACAATAAATGCTAAGATTCAAGCTTGCAATCACAAAATTAGCATGTTGAAAAATATGCAACAAATAGAAACTAGCACCTTGGATATATGTGAGATGATTGATTTTTCTGATCTTGGTGATTTTCCTCCTAGTTCACCATCAAACCAACTTAGTGGGCTTGTGGAGAGGAATGGCCAAGTTGTTGATCCTGATTATACAAGTGAGATGGTGGATTTCACAAGTCTTGGTGATTTGCCTCCTAGTTCATCATCAACCCAACTTAGTGGGCTTGTGGAGATGAGTGACCAAGTTGTTAATCCTGATTATATGAGTGAGATTGTGGATTTCACTAGTCTTGGTGATTTGCCTCCAAGTTCATCAGCAAACCAACTTAGTCAACTTGTTGATCTTGATGACTGGATAAATCAATTAGATGACGGTGTTTTGTGCTGGGATTGTCAACCTGATCAGTTTGTTTGGAAAGATCTTTCTTTTTAA

Protein sequence

>MS.gene43263.t1

MGRAKIPMKYIQSAKSRNITFKQRKHGLEKKISEFCKKSGAKACFIVYDGDHNNIEPTTWPEDLTSVNSLLQEYQNQKIEKTPEIFDVKDYFENKTEKVETKIKKVRRDILSKIYPTWHPHFSNLDENQLRDFIATINAKIQACNHKISMLKNMQQIETSTLDICEMIDFSDLGDFPPSSPSNQLSGLVERNGQVVDPDYTSEMVDFTSLGDLPPSSSSTQLSGLVEMSDQVVNPDYMSEIVDFTSLGDLPPSSSANQLSQLVDLDDWINQLDDGVLCWDCQPDQFVWKDLSF