Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43276.t1 | AES91128.2 | 98.3 | 358 | 5 | 1 | 1 | 357 | 1 | 358 | 2.10E-166 | 595.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43276.t1 | Q8LSZ4 | 55.2 | 364 | 135 | 9 | 5 | 355 | 22 | 370 | 5.8e-80 | 299.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43276.t1 | G7JNS6 | 98.3 | 358 | 5 | 1 | 1 | 357 | 1 | 358 | 1.5e-166 | 595.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene43276.t1 | TF | E2F-DP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43276.t1 | MTR_4g106540 | 98.324 | 358 | 5 | 1 | 1 | 357 | 1 | 358 | 0.0 | 727 |
| MS.gene43276.t1 | MTR_4g106540 | 98.039 | 357 | 6 | 1 | 1 | 356 | 1 | 357 | 0.0 | 724 |
| MS.gene43276.t1 | MTR_4g106540 | 96.429 | 364 | 6 | 2 | 1 | 357 | 1 | 364 | 0.0 | 718 |
| MS.gene43276.t1 | MTR_4g106540 | 97.935 | 339 | 6 | 1 | 1 | 338 | 1 | 339 | 0.0 | 680 |
| MS.gene43276.t1 | MTR_4g106540 | 95.942 | 345 | 7 | 2 | 1 | 338 | 1 | 345 | 0.0 | 671 |
| MS.gene43276.t1 | MTR_3g113800 | 46.377 | 69 | 37 | 0 | 14 | 82 | 99 | 167 | 1.08e-11 | 65.5 |
| MS.gene43276.t1 | MTR_3g113800 | 46.377 | 69 | 37 | 0 | 14 | 82 | 99 | 167 | 1.33e-11 | 65.5 |
| MS.gene43276.t1 | MTR_4g052000 | 44.776 | 67 | 37 | 0 | 17 | 83 | 138 | 204 | 1.44e-11 | 65.9 |
| MS.gene43276.t1 | MTR_1g105110 | 44.776 | 67 | 37 | 0 | 17 | 83 | 142 | 208 | 3.49e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43276.t1 | AT3G48160 | 55.000 | 360 | 130 | 12 | 12 | 356 | 29 | 371 | 2.09e-112 | 332 |
| MS.gene43276.t1 | AT3G48160 | 54.469 | 358 | 133 | 11 | 12 | 355 | 29 | 370 | 1.98e-110 | 328 |
| MS.gene43276.t1 | AT3G01330 | 47.813 | 343 | 150 | 5 | 13 | 355 | 17 | 330 | 1.34e-95 | 288 |
| MS.gene43276.t1 | AT5G14960 | 41.761 | 352 | 169 | 9 | 13 | 354 | 9 | 334 | 7.84e-80 | 248 |
| MS.gene43276.t1 | AT5G14960 | 37.915 | 211 | 114 | 6 | 154 | 354 | 38 | 241 | 2.80e-34 | 127 |
| MS.gene43276.t1 | AT5G22220 | 44.776 | 67 | 37 | 0 | 17 | 83 | 129 | 195 | 4.63e-11 | 64.3 |
| MS.gene43276.t1 | AT5G22220 | 44.776 | 67 | 37 | 0 | 17 | 83 | 129 | 195 | 4.95e-11 | 64.3 |
Find 84 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCTGGGAAAAGTTGAATT+AGG | 0.171110 | 8.4:-20314862 | None:intergenic |
| AAAGACGATGTTCGTTTAAT+TGG | 0.211016 | 8.4:+20314118 | MS.gene43276:CDS |
| CACCCTGACTTCCAGTGGTT+TGG | 0.211662 | 8.4:-20314795 | None:intergenic |
| GGCAATTCCTGTTGCTTTAC+AGG | 0.216414 | 8.4:+20314475 | MS.gene43276:CDS |
| TTCAGGTGGCTAGGCTTAAA+AGG | 0.224076 | 8.4:+20316434 | MS.gene43276:CDS |
| GTAATAATGAATACCTAATT+TGG | 0.256592 | 8.4:-20314158 | None:intergenic |
| ATTCAAAACAAAACGATTCT+AGG | 0.280464 | 8.4:+20316486 | MS.gene43276:CDS |
| TTTCCAGGTATACTGATTCT+TGG | 0.296038 | 8.4:-20314444 | None:intergenic |
| AGTATATTACCTTCTCAATA+AGG | 0.302257 | 8.4:-20316252 | None:intergenic |
| GACGACGCTGCCGCCAAATT+AGG | 0.309438 | 8.4:+20314145 | MS.gene43276:CDS |
| ACCCTGACTTCCAGTGGTTT+GGG | 0.311184 | 8.4:-20314794 | None:intergenic |
| ATCTGGGAAAAGTTGAATTA+GGG | 0.323897 | 8.4:-20314861 | None:intergenic |
| TACCTTCTCAATAAGGTTCA+TGG | 0.335894 | 8.4:-20316245 | None:intergenic |
| AATTGCCGCAAAACCTTTCC+AGG | 0.340573 | 8.4:-20314459 | None:intergenic |
| TGTTGCTTTACAGGAGCTTA+AGG | 0.369256 | 8.4:+20314484 | MS.gene43276:CDS |
| ATTCTCAGAGCTTCCAGCTT+TGG | 0.369624 | 8.4:-20316702 | None:intergenic |
| ATCCCAAACCACTGGAAGTC+AGG | 0.370120 | 8.4:+20314792 | MS.gene43276:CDS |
| ATTCTGACTTCCAGTGGGTT+GGG | 0.370825 | 8.4:-20314827 | None:intergenic |
| ACTTCAGCTAACTATCAATT+TGG | 0.373900 | 8.4:+20316656 | MS.gene43276:CDS |
| CATTCTGACTTCCAGTGGGT+TGG | 0.380743 | 8.4:-20314828 | None:intergenic |
| GAACAAGTCTGTTCTATTCC+TGG | 0.392480 | 8.4:-20316549 | None:intergenic |
| ATGAAAATGCTTAATTGCCT+TGG | 0.399936 | 8.4:-20316787 | None:intergenic |
| TCAATGTTCTCGAAAGCATC+GGG | 0.403367 | 8.4:+20314287 | MS.gene43276:CDS |
| AAGTGAAGCAGGTGCATGAC+TGG | 0.407996 | 8.4:+20316726 | MS.gene43276:CDS |
| AACAAAACGATTCTAGGAAA+AGG | 0.426966 | 8.4:+20316492 | MS.gene43276:CDS |
| GCACATTTGCAATATCATAA+AGG | 0.434271 | 8.4:-20316216 | None:intergenic |
| GATTCTAGGAAAAGGGCGTT+TGG | 0.443366 | 8.4:+20316500 | MS.gene43276:CDS |
| TTAAGCTCCTGTAAAGCAAC+AGG | 0.443519 | 8.4:-20314482 | None:intergenic |
| ATACAAGAAAACCAGCATTC+AGG | 0.443643 | 8.4:+20316417 | MS.gene43276:CDS |
| AAATGATAGTGGGCTATGTC+TGG | 0.446224 | 8.4:+20316607 | MS.gene43276:CDS |
| CTGGCCTTGCAGCAAAAGTT+AGG | 0.448266 | 8.4:+20316191 | MS.gene43276:intron |
| AAGACAATGGAAAATGATAG+TGG | 0.463413 | 8.4:+20316596 | MS.gene43276:CDS |
| GATACAAAGGCAGGAGCAAA+AGG | 0.470114 | 8.4:-20316680 | None:intergenic |
| AAGCCTAGCCACCTGAATGC+TGG | 0.489317 | 8.4:-20316428 | None:intergenic |
| CTCTGAGAATAAAGTGAAGC+AGG | 0.496045 | 8.4:+20316715 | MS.gene43276:CDS |
| ACAAAACGATTCTAGGAAAA+GGG | 0.498407 | 8.4:+20316493 | MS.gene43276:CDS |
| ACACTTACTTGGTGCATAAG+AGG | 0.500577 | 8.4:-20313994 | None:intergenic |
| CCTGCCTTTGTATCCAAAGC+TGG | 0.506957 | 8.4:+20316689 | MS.gene43276:CDS |
| GAATAGAACAGACTTGTTCA+TGG | 0.511403 | 8.4:+20316553 | MS.gene43276:CDS |
| ACAACCTTGCTGCATCATCA+AGG | 0.524403 | 8.4:-20316048 | None:intergenic |
| AAGCCAAGAATCAGTATACC+TGG | 0.526713 | 8.4:+20314441 | MS.gene43276:CDS |
| ACTTGGTGCATAAGAGGCCG+AGG | 0.537885 | 8.4:-20313988 | None:intergenic |
| AATCTCAATTCTTCACAAGA+AGG | 0.539424 | 8.4:+20314630 | MS.gene43276:CDS |
| GTCAATGTTCTCGAAAGCAT+CGG | 0.541833 | 8.4:+20314286 | MS.gene43276:CDS |
| TCACAAACATAAGCTTTGCC+AGG | 0.545422 | 8.4:+20316531 | MS.gene43276:CDS |
| AAGAATCAGTATACCTGGAA+AGG | 0.546799 | 8.4:+20314446 | MS.gene43276:CDS |
| GATGCAGCAAGGTTGTTGCT+TGG | 0.550005 | 8.4:+20316055 | MS.gene43276:CDS |
| CCAGCTTTGGATACAAAGGC+AGG | 0.550221 | 8.4:-20316689 | None:intergenic |
| TCGTAAGTGTGGTGTCGAGA+AGG | 0.550230 | 8.4:-20313950 | None:intergenic |
| ATCGGAGGAAGAAGCAGCCA+TGG | 0.550392 | 8.4:-20313924 | None:intergenic |
| ATTGTCATTCTGACTTCCAG+TGG | 0.553060 | 8.4:-20314833 | None:intergenic |
| CTCCATGAACCTTATTGAGA+AGG | 0.554046 | 8.4:+20316243 | MS.gene43276:CDS |
| AAACCAGCATTCAGGTGGCT+AGG | 0.559723 | 8.4:+20316425 | MS.gene43276:CDS |
| TTGTCATTCTGACTTCCAGT+GGG | 0.561775 | 8.4:-20314832 | None:intergenic |
| TCAGGTGGCTAGGCTTAAAA+GGG | 0.561931 | 8.4:+20316435 | MS.gene43276:CDS |
| GTTCAGGTGTTGAGAGAAGA+CGG | 0.579277 | 8.4:+20314251 | MS.gene43276:intron |
| TCCCAAACCACTGGAAGTCA+GGG | 0.581818 | 8.4:+20314793 | MS.gene43276:CDS |
| TGATTCACCCTGACTTCCAG+TGG | 0.587552 | 8.4:-20314800 | None:intergenic |
| ATAATGAATACCTAATTTGG+CGG | 0.587773 | 8.4:-20314155 | None:intergenic |
| GCTTCCAGCTTTGGATACAA+AGG | 0.589316 | 8.4:-20316693 | None:intergenic |
| GGTATCGGATGAAGAGGATG+AGG | 0.589877 | 8.4:+20314759 | MS.gene43276:intron |
| AAAAGGGAAGACATTGAATG+AGG | 0.592429 | 8.4:+20316451 | MS.gene43276:CDS |
| AGTGAAGCAGGTGCATGACT+GGG | 0.592595 | 8.4:+20316727 | MS.gene43276:CDS |
| GATTTAGGTATCGGATGAAG+AGG | 0.593110 | 8.4:+20314753 | MS.gene43276:intron |
| TTTGTTTACGATCGTAAGTG+TGG | 0.596230 | 8.4:-20313961 | None:intergenic |
| AATAGAACAGACTTGTTCAT+GGG | 0.597678 | 8.4:+20316554 | MS.gene43276:CDS |
| GAATCATTATCCCAACCCAC+TGG | 0.603753 | 8.4:+20314817 | MS.gene43276:CDS |
| CAACCTTGCTGCATCATCAA+GGG | 0.604844 | 8.4:-20316047 | None:intergenic |
| CTCAATTCTTCACAAGAAGG+TGG | 0.607030 | 8.4:+20314633 | MS.gene43276:CDS |
| CTTGGTGCATAAGAGGCCGA+GGG | 0.608163 | 8.4:-20313987 | None:intergenic |
| AGACAATGGAAAATGATAGT+GGG | 0.608266 | 8.4:+20316597 | MS.gene43276:CDS |
| GAATTGTTATCCCAAACCAC+TGG | 0.620803 | 8.4:+20314784 | MS.gene43276:CDS |
| CTTTAAGAAGCAAAAGACAA+TGG | 0.627305 | 8.4:+20316583 | MS.gene43276:CDS |
| TAAGTGTGGTGTCGAGAAGG+AGG | 0.633826 | 8.4:-20313947 | None:intergenic |
| GTGGTGTCGAGAAGGAGGAT+CGG | 0.634729 | 8.4:-20313942 | None:intergenic |
| AGGTGGCAATGAAGATGTGA+AGG | 0.635108 | 8.4:+20314650 | MS.gene43276:CDS |
| GTGTCGAGAAGGAGGATCGG+AGG | 0.637595 | 8.4:-20313939 | None:intergenic |
| CAAGAAAACCAGCATTCAGG+TGG | 0.647844 | 8.4:+20316420 | MS.gene43276:CDS |
| CTTCTCAATAAGGTTCATGG+AGG | 0.657302 | 8.4:-20316242 | None:intergenic |
| TGCCCTCAGTATCAAAACCA+AGG | 0.661299 | 8.4:+20316770 | MS.gene43276:CDS |
| AGAACAGACTTGTTCATGGG+TGG | 0.672206 | 8.4:+20316557 | MS.gene43276:CDS |
| TGTCTGGAAGATGTGAAACA+AGG | 0.683639 | 8.4:+20316623 | MS.gene43276:CDS |
| CAATGTTCTCGAAAGCATCG+GGG | 0.717872 | 8.4:+20314288 | MS.gene43276:CDS |
| TATCCCTTGATGATGCAGCA+AGG | 0.728015 | 8.4:+20316044 | MS.gene43276:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTAATAAAAAAAAAAAA+AGG | - | chr8.4:20314366-20314385 | None:intergenic | 0.0% |
| !! | AATTAATAAAAAAAAAAAAA+GGG | - | chr8.4:20314365-20314384 | None:intergenic | 0.0% |
| !! | TTATAAAATTCAATAAACAA+TGG | - | chr8.4:20315759-20315778 | None:intergenic | 10.0% |
| !!! | GATATTTTTAAATCATTAAA+AGG | - | chr8.4:20315098-20315117 | None:intergenic | 10.0% |
| !!! | TTTATTGAATTTTATAATAC+TGG | + | chr8.4:20315762-20315781 | MS.gene43276:intron | 10.0% |
| !!! | TTTTATTAATTTTTGTTCAT+CGG | + | chr8.4:20314374-20314393 | MS.gene43276:intron | 10.0% |
| !! | AATAAAAAAAAAAAAAGGGT+GGG | - | chr8.4:20314361-20314380 | None:intergenic | 15.0% |
| !! | TAATAAAAAAAAAAAAAGGG+TGG | - | chr8.4:20314362-20314381 | None:intergenic | 15.0% |
| !!! | AAATGGTAACTTTTTTATTT+TGG | + | chr8.4:20314891-20314910 | MS.gene43276:intron | 15.0% |
| !!! | AATATAAAATGAAAAGTGTA+AGG | - | chr8.4:20316278-20316297 | None:intergenic | 15.0% |
| !!! | AATGGTAACTTTTTTATTTT+GGG | + | chr8.4:20314892-20314911 | MS.gene43276:intron | 15.0% |
| !!! | ATTTTTATGAGAAGTATAAT+TGG | + | chr8.4:20314700-20314719 | MS.gene43276:intron | 15.0% |
| !!! | TAATTGTTTTGATTTTGAAT+GGG | + | chr8.4:20314582-20314601 | MS.gene43276:intron | 15.0% |
| !!! | TCACTAATTATTTATTGATT+CGG | + | chr8.4:20314062-20314081 | MS.gene43276:intron | 15.0% |
| !!! | TTAAGGTAATTTCAAATTTT+AGG | + | chr8.4:20314501-20314520 | MS.gene43276:intron | 15.0% |
| !!! | TTTGTTTTTCTTCAAATTTT+GGG | + | chr8.4:20315060-20315079 | MS.gene43276:intron | 15.0% |
| !!! | TTTTGTTTTTCTTCAAATTT+TGG | + | chr8.4:20315059-20315078 | MS.gene43276:intron | 15.0% |
| !! | AGAAGAATAAACTGTAAATA+TGG | - | chr8.4:20315014-20315033 | None:intergenic | 20.0% |
| !! | GTAATAATGAATACCTAATT+TGG | - | chr8.4:20314161-20314180 | None:intergenic | 20.0% |
| !! | TCACAGAATTTAAATTAAGA+AGG | - | chr8.4:20314535-20314554 | None:intergenic | 20.0% |
| !! | TTAACTAAATTATCATTCTC+TGG | - | chr8.4:20315721-20315740 | None:intergenic | 20.0% |
| !! | TTTAAGTAATTTCGTGATTT+AGG | + | chr8.4:20314738-20314757 | MS.gene43276:intron | 20.0% |
| !!! | GGTTTTTTATTGTTTTTGTT+TGG | + | chr8.4:20314395-20314414 | MS.gene43276:intron | 20.0% |
| !!! | GTAATTGTTTTGATTTTGAA+TGG | + | chr8.4:20314581-20314600 | MS.gene43276:intron | 20.0% |
| !!! | GTTTTTGTTTGGTTTTTTTT+AGG | + | chr8.4:20314406-20314425 | MS.gene43276:intron | 20.0% |
| ! | AATTTAGTTAAAGATGTGCA+TGG | + | chr8.4:20315730-20315749 | MS.gene43276:intron | 25.0% |
| ! | AGTATATTACCTTCTCAATA+AGG | - | chr8.4:20316255-20316274 | None:intergenic | 25.0% |
| ! | AGTTTAACATATCAGATGTA+TGG | - | chr8.4:20315982-20316001 | None:intergenic | 25.0% |
| ! | ATAAAGAAATCAATGCAAAG+AGG | - | chr8.4:20316354-20316373 | None:intergenic | 25.0% |
| ! | ATAATGAATACCTAATTTGG+CGG | - | chr8.4:20314158-20314177 | None:intergenic | 25.0% |
| ! | ATTAAAGACATAAATCAGCT+TGG | - | chr8.4:20315952-20315971 | None:intergenic | 25.0% |
| ! | ATTCAAAACAAAACGATTCT+AGG | + | chr8.4:20316486-20316505 | MS.gene43276:CDS | 25.0% |
| ! | CTAAGTGTTTGTTTAGATTA+AGG | - | chr8.4:20315466-20315485 | None:intergenic | 25.0% |
| ! | GTTAACGAAAACAAACAAAT+TGG | - | chr8.4:20316132-20316151 | None:intergenic | 25.0% |
| ! | TAATTTCGTGATTTAGGTAT+CGG | + | chr8.4:20314744-20314763 | MS.gene43276:intron | 25.0% |
| ! | TATTCTTCTAAATGCATCAT+AGG | + | chr8.4:20315025-20315044 | MS.gene43276:intron | 25.0% |
| ! | TGCAATTTGCAAATTAAAGT+TGG | - | chr8.4:20315249-20315268 | None:intergenic | 25.0% |
| !! | AACCCTTATTTAGTTAACTT+GGG | - | chr8.4:20315338-20315357 | None:intergenic | 25.0% |
| !! | AGAAGTATAATTGGTTTAGT+AGG | + | chr8.4:20314709-20314728 | MS.gene43276:intron | 25.0% |
| !! | GAAGTATAATTGGTTTAGTA+GGG | + | chr8.4:20314710-20314729 | MS.gene43276:intron | 25.0% |
| !! | TAGGATGTTTTCTTTTCTTA+GGG | + | chr8.4:20315616-20315635 | MS.gene43276:intron | 25.0% |
| !! | TTAGGATGTTTTCTTTTCTT+AGG | + | chr8.4:20315615-20315634 | MS.gene43276:intron | 25.0% |
| !!! | ATAGCAGAATTTTTGAAACA+TGG | + | chr8.4:20315190-20315209 | MS.gene43276:intron | 25.0% |
| !!! | ATCAGATTGTTCAAGTTTTT+AGG | + | chr8.4:20315597-20315616 | MS.gene43276:intron | 25.0% |
| !!! | TAGCAGAATTTTTGAAACAT+GGG | + | chr8.4:20315191-20315210 | MS.gene43276:intron | 25.0% |
| !!! | TTACCATTTTTCAAAGATCT+GGG | - | chr8.4:20314880-20314899 | None:intergenic | 25.0% |
| !!! | TTGATTTTGAATGGGTTTTT+AGG | + | chr8.4:20314590-20314609 | MS.gene43276:intron | 25.0% |
| !!! | TTGTTTTGTTCGAATGTAAA+TGG | - | chr8.4:20315651-20315670 | None:intergenic | 25.0% |
| AAAGACGATGTTCGTTTAAT+TGG | + | chr8.4:20314118-20314137 | MS.gene43276:CDS | 30.0% | |
| AACAGTTGTTAATGATGTTC+AGG | + | chr8.4:20314235-20314254 | MS.gene43276:intron | 30.0% | |
| AACCCCAAGTTAACTAAATA+AGG | + | chr8.4:20315332-20315351 | MS.gene43276:intron | 30.0% | |
| AAGACAATGGAAAATGATAG+TGG | + | chr8.4:20316596-20316615 | MS.gene43276:CDS | 30.0% | |
| AATCTCAATTCTTCACAAGA+AGG | + | chr8.4:20314630-20314649 | MS.gene43276:CDS | 30.0% | |
| ACATGAGGGAACAAAAATTA+AGG | - | chr8.4:20314337-20314356 | None:intergenic | 30.0% | |
| ACCCCAAGTTAACTAAATAA+GGG | + | chr8.4:20315333-20315352 | MS.gene43276:intron | 30.0% | |
| ACTTCAGCTAACTATCAATT+TGG | + | chr8.4:20316656-20316675 | MS.gene43276:CDS | 30.0% | |
| AGACAATGGAAAATGATAGT+GGG | + | chr8.4:20316597-20316616 | MS.gene43276:CDS | 30.0% | |
| ATCTGGGAAAAGTTGAATTA+GGG | - | chr8.4:20314864-20314883 | None:intergenic | 30.0% | |
| CAAAAGACATAATACAGGTA+TGG | - | chr8.4:20315519-20315538 | None:intergenic | 30.0% | |
| GCACATTTGCAATATCATAA+AGG | - | chr8.4:20316219-20316238 | None:intergenic | 30.0% | |
| TAAGAAAAACTAGAGTAGAG+TGG | + | chr8.4:20315136-20315155 | MS.gene43276:intron | 30.0% | |
| TATAATACTGGAGTTGTATG+TGG | + | chr8.4:20315774-20315793 | MS.gene43276:intron | 30.0% | |
| TGAACAATCTGATGAGAATT+GGG | - | chr8.4:20315590-20315609 | None:intergenic | 30.0% | |
| TGAACATCATTAACAACTGT+TGG | - | chr8.4:20314236-20314255 | None:intergenic | 30.0% | |
| TTGAACAATCTGATGAGAAT+TGG | - | chr8.4:20315591-20315610 | None:intergenic | 30.0% | |
| ! | AACAAAACGATTCTAGGAAA+AGG | + | chr8.4:20316492-20316511 | MS.gene43276:CDS | 30.0% |
| ! | AATAGAACAGACTTGTTCAT+GGG | + | chr8.4:20316554-20316573 | MS.gene43276:CDS | 30.0% |
| ! | ACAAAACGATTCTAGGAAAA+GGG | + | chr8.4:20316493-20316512 | MS.gene43276:CDS | 30.0% |
| ! | ACCCTTATTTAGTTAACTTG+GGG | - | chr8.4:20315337-20315356 | None:intergenic | 30.0% |
| ! | CTTTAAGAAGCAAAAGACAA+TGG | + | chr8.4:20316583-20316602 | MS.gene43276:CDS | 30.0% |
| ! | GAACCCTTATTTAGTTAACT+TGG | - | chr8.4:20315339-20315358 | None:intergenic | 30.0% |
| ! | GGCGATAATTTGAATTTTTG+AGG | + | chr8.4:20315157-20315176 | MS.gene43276:intron | 30.0% |
| ! | TGTTTTCTTTTCTTAGGGTT+AGG | + | chr8.4:20315621-20315640 | MS.gene43276:intron | 30.0% |
| ! | TTAATGTTTTGCAGACAGAA+GGG | + | chr8.4:20315842-20315861 | MS.gene43276:intron | 30.0% |
| ! | TTTAATGTTTTGCAGACAGA+AGG | + | chr8.4:20315841-20315860 | MS.gene43276:intron | 30.0% |
| ! | TTTCCCAGATCTTTGAAAAA+TGG | + | chr8.4:20314874-20314893 | MS.gene43276:CDS | 30.0% |
| ! | TTTTCTTGTATCTGTGGTAT+GGG | - | chr8.4:20316408-20316427 | None:intergenic | 30.0% |
| !! | GTTACCATTTTTCAAAGATC+TGG | - | chr8.4:20314881-20314900 | None:intergenic | 30.0% |
| !!! | GAATTTTTGAAACATGGGTT+TGG | + | chr8.4:20315196-20315215 | MS.gene43276:intron | 30.0% |
| AAAAGGGAAGACATTGAATG+AGG | + | chr8.4:20316451-20316470 | MS.gene43276:CDS | 35.0% | |
| AACATATCAGATGTATGGCA+TGG | - | chr8.4:20315977-20315996 | None:intergenic | 35.0% | |
| AAGAATCAGTATACCTGGAA+AGG | + | chr8.4:20314446-20314465 | MS.gene43276:CDS | 35.0% | |
| ACACACACATTAATACGTTG+TGG | + | chr8.4:20315410-20315429 | MS.gene43276:intron | 35.0% | |
| ATACAAGAAAACCAGCATTC+AGG | + | chr8.4:20316417-20316436 | MS.gene43276:CDS | 35.0% | |
| ATTAATGTGTGTGTAGACTG+AGG | - | chr8.4:20315404-20315423 | None:intergenic | 35.0% | |
| CACACACATTAATACGTTGT+GGG | + | chr8.4:20315411-20315430 | MS.gene43276:intron | 35.0% | |
| CTATGCTTATCCAGCAAAAT+TGG | - | chr8.4:20315365-20315384 | None:intergenic | 35.0% | |
| CTTGGAATGAACAAGAAACT+AGG | - | chr8.4:20315934-20315953 | None:intergenic | 35.0% | |
| GAGTAAGAGTAACACTTACT+TGG | - | chr8.4:20314008-20314027 | None:intergenic | 35.0% | |
| GATCGTAAACAAAAATCCCT+CGG | + | chr8.4:20313971-20313990 | MS.gene43276:CDS | 35.0% | |
| GATCTGGGAAAAGTTGAATT+AGG | - | chr8.4:20314865-20314884 | None:intergenic | 35.0% | |
| GTGCACAAAAGACATAATAC+AGG | - | chr8.4:20315524-20315543 | None:intergenic | 35.0% | |
| TACCTTCTCAATAAGGTTCA+TGG | - | chr8.4:20316248-20316267 | None:intergenic | 35.0% | |
| TTTGTTTACGATCGTAAGTG+TGG | - | chr8.4:20313964-20313983 | None:intergenic | 35.0% | |
| ! | CAATTTTGCTGGATAAGCAT+AGG | + | chr8.4:20315363-20315382 | MS.gene43276:intron | 35.0% |
| ! | GAATAGAACAGACTTGTTCA+TGG | + | chr8.4:20316553-20316572 | MS.gene43276:CDS | 35.0% |
| ! | GTTTTCTTGTATCTGTGGTA+TGG | - | chr8.4:20316409-20316428 | None:intergenic | 35.0% |
| !! | CGTTGTGGGTTATAGTTTTA+AGG | + | chr8.4:20315425-20315444 | MS.gene43276:intron | 35.0% |
| !! | GTTTTTAGGAAGAGGGTTTA+TGG | + | chr8.4:20314604-20314623 | MS.gene43276:intron | 35.0% |
| !! | TGAATGGGTTTTTAGGAAGA+GGG | + | chr8.4:20314597-20314616 | MS.gene43276:intron | 35.0% |
| !! | TTATGAACCTGTGTTTTTGC+TGG | + | chr8.4:20314933-20314952 | MS.gene43276:intron | 35.0% |
| !! | TTGAATGGGTTTTTAGGAAG+AGG | + | chr8.4:20314596-20314615 | MS.gene43276:intron | 35.0% |
| !! | TTTCCAGGTATACTGATTCT+TGG | - | chr8.4:20314447-20314466 | None:intergenic | 35.0% |
| AAAAAAAGGGTGGGAACATG+AGG | - | chr8.4:20314352-20314371 | None:intergenic | 40.0% | |
| AAAAAAGGGTGGGAACATGA+GGG | - | chr8.4:20314351-20314370 | None:intergenic | 40.0% | |
| AACAACACCAGCAAAAACAC+AGG | - | chr8.4:20314943-20314962 | None:intergenic | 40.0% | |
| AAGCCAAGAATCAGTATACC+TGG | + | chr8.4:20314441-20314460 | MS.gene43276:CDS | 40.0% | |
| AGACAGAAGGGAAAAATCTC+TGG | + | chr8.4:20315854-20315873 | MS.gene43276:intron | 40.0% | |
| ATTGTCATTCTGACTTCCAG+TGG | - | chr8.4:20314836-20314855 | None:intergenic | 40.0% | |
| CTCAATTCTTCACAAGAAGG+TGG | + | chr8.4:20314633-20314652 | MS.gene43276:CDS | 40.0% | |
| CTCCATGAACCTTATTGAGA+AGG | + | chr8.4:20316243-20316262 | MS.gene43276:CDS | 40.0% | |
| CTTCTCAATAAGGTTCATGG+AGG | - | chr8.4:20316245-20316264 | None:intergenic | 40.0% | |
| GAACAAGTCTGTTCTATTCC+TGG | - | chr8.4:20316552-20316571 | None:intergenic | 40.0% | |
| GAATTGTTATCCCAAACCAC+TGG | + | chr8.4:20314784-20314803 | MS.gene43276:CDS | 40.0% | |
| GTTGTATGTGGACTTAGACT+TGG | + | chr8.4:20315786-20315805 | MS.gene43276:intron | 40.0% | |
| TCACAAACATAAGCTTTGCC+AGG | + | chr8.4:20316531-20316550 | MS.gene43276:CDS | 40.0% | |
| TGAGAATTGGGATTGTTCTG+AGG | - | chr8.4:20315578-20315597 | None:intergenic | 40.0% | |
| TGTCTGGAAGATGTGAAACA+AGG | + | chr8.4:20316623-20316642 | MS.gene43276:CDS | 40.0% | |
| TTAAGCTCCTGTAAAGCAAC+AGG | - | chr8.4:20314485-20314504 | None:intergenic | 40.0% | |
| TTGTCATTCTGACTTCCAGT+GGG | - | chr8.4:20314835-20314854 | None:intergenic | 40.0% | |
| ! | AGGGTTCAATCCAATTTTGC+TGG | + | chr8.4:20315352-20315371 | MS.gene43276:intron | 40.0% |
| ! | CTCTGAGAATAAAGTGAAGC+AGG | + | chr8.4:20316715-20316734 | MS.gene43276:CDS | 40.0% |
| ! | GTATACCTGGAAAGGTTTTG+CGG | + | chr8.4:20314454-20314473 | MS.gene43276:CDS | 40.0% |
| ! | GTCAATGTTCTCGAAAGCAT+CGG | + | chr8.4:20314286-20314305 | MS.gene43276:CDS | 40.0% |
| ! | TTTTCACTTACAGTCCCATC+TGG | + | chr8.4:20316172-20316191 | MS.gene43276:intron | 40.0% |
| !! | AAATGATAGTGGGCTATGTC+TGG | + | chr8.4:20316607-20316626 | MS.gene43276:CDS | 40.0% |
| !! | ACACTTACTTGGTGCATAAG+AGG | - | chr8.4:20313997-20314016 | None:intergenic | 40.0% |
| !! | GATTTAGGTATCGGATGAAG+AGG | + | chr8.4:20314753-20314772 | MS.gene43276:intron | 40.0% |
| !! | TCAATGTTCTCGAAAGCATC+GGG | + | chr8.4:20314287-20314306 | MS.gene43276:CDS | 40.0% |
| !! | TGTTGCTTTACAGGAGCTTA+AGG | + | chr8.4:20314484-20314503 | MS.gene43276:CDS | 40.0% |
| !!! | TGCCTTGGTTTTGATACTGA+GGG | - | chr8.4:20316775-20316794 | None:intergenic | 40.0% |
| !!! | TGCTGGTTTTCTTGTATCTG+TGG | - | chr8.4:20316414-20316433 | None:intergenic | 40.0% |
| !!! | TTGCCTTGGTTTTGATACTG+AGG | - | chr8.4:20316776-20316795 | None:intergenic | 40.0% |
| !!! | TTGGCACTGATTGCATTTTG+AGG | + | chr8.4:20315805-20315824 | MS.gene43276:intron | 40.0% |
| !!! | TTTTGCTGGTGTTGTTGTTG+TGG | + | chr8.4:20314947-20314966 | MS.gene43276:intron | 40.0% |
| AATTGCCGCAAAACCTTTCC+AGG | - | chr8.4:20314462-20314481 | None:intergenic | 45.0% | |
| ACAACCTTGCTGCATCATCA+AGG | - | chr8.4:20316051-20316070 | None:intergenic | 45.0% | |
| AGGTGGCAATGAAGATGTGA+AGG | + | chr8.4:20314650-20314669 | MS.gene43276:CDS | 45.0% | |
| ATTCTCAGAGCTTCCAGCTT+TGG | - | chr8.4:20316705-20316724 | None:intergenic | 45.0% | |
| CAACCTTGCTGCATCATCAA+GGG | - | chr8.4:20316050-20316069 | None:intergenic | 45.0% | |
| CAAGAAAACCAGCATTCAGG+TGG | + | chr8.4:20316420-20316439 | MS.gene43276:CDS | 45.0% | |
| GAATCATTATCCCAACCCAC+TGG | + | chr8.4:20314817-20314836 | MS.gene43276:CDS | 45.0% | |
| GATACAAAGGCAGGAGCAAA+AGG | - | chr8.4:20316683-20316702 | None:intergenic | 45.0% | |
| TCAGGTGGCTAGGCTTAAAA+GGG | + | chr8.4:20316435-20316454 | MS.gene43276:CDS | 45.0% | |
| TGCCCTCAGTATCAAAACCA+AGG | + | chr8.4:20316770-20316789 | MS.gene43276:CDS | 45.0% | |
| TTCAGGTGGCTAGGCTTAAA+AGG | + | chr8.4:20316434-20316453 | MS.gene43276:CDS | 45.0% | |
| ! | AGAACAGACTTGTTCATGGG+TGG | + | chr8.4:20316557-20316576 | MS.gene43276:CDS | 45.0% |
| ! | ATTCTGACTTCCAGTGGGTT+GGG | - | chr8.4:20314830-20314849 | None:intergenic | 45.0% |
| !! | CAATGTTCTCGAAAGCATCG+GGG | + | chr8.4:20314288-20314307 | MS.gene43276:CDS | 45.0% |
| !! | GATTCTAGGAAAAGGGCGTT+TGG | + | chr8.4:20316500-20316519 | MS.gene43276:CDS | 45.0% |
| !! | GCTTCCAGCTTTGGATACAA+AGG | - | chr8.4:20316696-20316715 | None:intergenic | 45.0% |
| !! | GGCAATTCCTGTTGCTTTAC+AGG | + | chr8.4:20314475-20314494 | MS.gene43276:CDS | 45.0% |
| !! | GTTCAGGTGTTGAGAGAAGA+CGG | + | chr8.4:20314251-20314270 | MS.gene43276:intron | 45.0% |
| !! | TATCCCTTGATGATGCAGCA+AGG | + | chr8.4:20316044-20316063 | MS.gene43276:CDS | 45.0% |
| !!! | TTTTAAAAAATAAAACAAAT+TGG | + | chr8.4:20314203-20314222 | MS.gene43276:intron | 5.0% |
| AAACCAGCATTCAGGTGGCT+AGG | + | chr8.4:20316425-20316444 | MS.gene43276:CDS | 50.0% | |
| AAGTGAAGCAGGTGCATGAC+TGG | + | chr8.4:20316726-20316745 | MS.gene43276:CDS | 50.0% | |
| ACCCTGACTTCCAGTGGTTT+GGG | - | chr8.4:20314797-20314816 | None:intergenic | 50.0% | |
| AGTGAAGCAGGTGCATGACT+GGG | + | chr8.4:20316727-20316746 | MS.gene43276:CDS | 50.0% | |
| ATCCCAAACCACTGGAAGTC+AGG | + | chr8.4:20314792-20314811 | MS.gene43276:CDS | 50.0% | |
| CATTCTGACTTCCAGTGGGT+TGG | - | chr8.4:20314831-20314850 | None:intergenic | 50.0% | |
| CCTGCCTTTGTATCCAAAGC+TGG | + | chr8.4:20316689-20316708 | MS.gene43276:CDS | 50.0% | |
| CTGGATAAGCATAGGTCGAG+GGG | + | chr8.4:20315371-20315390 | MS.gene43276:intron | 50.0% | |
| GATGCAGCAAGGTTGTTGCT+TGG | + | chr8.4:20316055-20316074 | MS.gene43276:CDS | 50.0% | |
| GCTGGATAAGCATAGGTCGA+GGG | + | chr8.4:20315370-20315389 | MS.gene43276:intron | 50.0% | |
| TAACCACTCTACTCTGCAGC+TGG | + | chr8.4:20316015-20316034 | MS.gene43276:intron | 50.0% | |
| TCCCAAACCACTGGAAGTCA+GGG | + | chr8.4:20314793-20314812 | MS.gene43276:CDS | 50.0% | |
| TGATTCACCCTGACTTCCAG+TGG | - | chr8.4:20314803-20314822 | None:intergenic | 50.0% | |
| TGCTGGATAAGCATAGGTCG+AGG | + | chr8.4:20315369-20315388 | MS.gene43276:intron | 50.0% | |
| TTTCCAGCTGCAGAGTAGAG+TGG | - | chr8.4:20316021-20316040 | None:intergenic | 50.0% | |
| ! | ACTTTTGCTGCAAGGCCAGA+TGG | - | chr8.4:20316190-20316209 | None:intergenic | 50.0% |
| ! | CTTTTGCTGCAAGGCCAGAT+GGG | - | chr8.4:20316189-20316208 | None:intergenic | 50.0% |
| ! | GGTATCGGATGAAGAGGATG+AGG | + | chr8.4:20314759-20314778 | MS.gene43276:intron | 50.0% |
| ! | TAAGTGTGGTGTCGAGAAGG+AGG | - | chr8.4:20313950-20313969 | None:intergenic | 50.0% |
| ! | TCGTAAGTGTGGTGTCGAGA+AGG | - | chr8.4:20313953-20313972 | None:intergenic | 50.0% |
| !! | CCAGCTTTGGATACAAAGGC+AGG | - | chr8.4:20316692-20316711 | None:intergenic | 50.0% |
| !! | CTGGCCTTGCAGCAAAAGTT+AGG | + | chr8.4:20316191-20316210 | MS.gene43276:intron | 50.0% |
| AAGCCTAGCCACCTGAATGC+TGG | - | chr8.4:20316431-20316450 | None:intergenic | 55.0% | |
| CACCCTGACTTCCAGTGGTT+TGG | - | chr8.4:20314798-20314817 | None:intergenic | 55.0% | |
| ! | CTTGGTGCATAAGAGGCCGA+GGG | - | chr8.4:20313990-20314009 | None:intergenic | 55.0% |
| ! | GGCGCCTAACTTTTGCTGCA+AGG | - | chr8.4:20316198-20316217 | None:intergenic | 55.0% |
| ! | GTGGTGTCGAGAAGGAGGAT+CGG | - | chr8.4:20313945-20313964 | None:intergenic | 55.0% |
| !! | ACTTGGTGCATAAGAGGCCG+AGG | - | chr8.4:20313991-20314010 | None:intergenic | 55.0% |
| GACGACGCTGCCGCCAAATT+AGG | + | chr8.4:20314145-20314164 | MS.gene43276:CDS | 60.0% | |
| GTGTCGAGAAGGAGGATCGG+AGG | - | chr8.4:20313942-20313961 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 20313926 | 20316799 | 20313926 | ID=MS.gene43276 |
| chr8.4 | mRNA | 20313926 | 20316799 | 20313926 | ID=MS.gene43276.t1;Parent=MS.gene43276 |
| chr8.4 | exon | 20313926 | 20314008 | 20313926 | ID=MS.gene43276.t1.exon1;Parent=MS.gene43276.t1 |
| chr8.4 | CDS | 20313926 | 20314008 | 20313926 | ID=cds.MS.gene43276.t1;Parent=MS.gene43276.t1 |
| chr8.4 | exon | 20314099 | 20314166 | 20314099 | ID=MS.gene43276.t1.exon2;Parent=MS.gene43276.t1 |
| chr8.4 | CDS | 20314099 | 20314166 | 20314099 | ID=cds.MS.gene43276.t1;Parent=MS.gene43276.t1 |
| chr8.4 | exon | 20314257 | 20314309 | 20314257 | ID=MS.gene43276.t1.exon3;Parent=MS.gene43276.t1 |
| chr8.4 | CDS | 20314257 | 20314309 | 20314257 | ID=cds.MS.gene43276.t1;Parent=MS.gene43276.t1 |
| chr8.4 | exon | 20314428 | 20314505 | 20314428 | ID=MS.gene43276.t1.exon4;Parent=MS.gene43276.t1 |
| chr8.4 | CDS | 20314428 | 20314505 | 20314428 | ID=cds.MS.gene43276.t1;Parent=MS.gene43276.t1 |
| chr8.4 | exon | 20314612 | 20314671 | 20314612 | ID=MS.gene43276.t1.exon5;Parent=MS.gene43276.t1 |
| chr8.4 | CDS | 20314612 | 20314671 | 20314612 | ID=cds.MS.gene43276.t1;Parent=MS.gene43276.t1 |
| chr8.4 | exon | 20314760 | 20314895 | 20314760 | ID=MS.gene43276.t1.exon6;Parent=MS.gene43276.t1 |
| chr8.4 | CDS | 20314760 | 20314895 | 20314760 | ID=cds.MS.gene43276.t1;Parent=MS.gene43276.t1 |
| chr8.4 | exon | 20315856 | 20315920 | 20315856 | ID=MS.gene43276.t1.exon7;Parent=MS.gene43276.t1 |
| chr8.4 | CDS | 20315856 | 20315920 | 20315856 | ID=cds.MS.gene43276.t1;Parent=MS.gene43276.t1 |
| chr8.4 | exon | 20316034 | 20316106 | 20316034 | ID=MS.gene43276.t1.exon8;Parent=MS.gene43276.t1 |
| chr8.4 | CDS | 20316034 | 20316106 | 20316034 | ID=cds.MS.gene43276.t1;Parent=MS.gene43276.t1 |
| chr8.4 | exon | 20316203 | 20316264 | 20316203 | ID=MS.gene43276.t1.exon9;Parent=MS.gene43276.t1 |
| chr8.4 | CDS | 20316203 | 20316264 | 20316203 | ID=cds.MS.gene43276.t1;Parent=MS.gene43276.t1 |
| chr8.4 | exon | 20316404 | 20316799 | 20316404 | ID=MS.gene43276.t1.exon10;Parent=MS.gene43276.t1 |
| chr8.4 | CDS | 20316404 | 20316799 | 20316404 | ID=cds.MS.gene43276.t1;Parent=MS.gene43276.t1 |
| Gene Sequence |
| Protein sequence |
