Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43382.t1 | XP_024625397.1 | 95.8 | 313 | 11 | 1 | 1 | 311 | 1 | 313 | 6.70E-162 | 580.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43382.t1 | Q9LUH8 | 56.2 | 329 | 107 | 5 | 19 | 318 | 31 | 351 | 8.4e-89 | 329.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43382.t1 | A0A072U293 | 97.4 | 302 | 6 | 1 | 1 | 300 | 1 | 302 | 3.8e-159 | 571.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene43382.t1 | TF | HSF |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43382.t1 | MTR_7g095680 | 97.351 | 302 | 6 | 1 | 1 | 300 | 1 | 302 | 0.0 | 602 |
MS.gene43382.t1 | MTR_7g095690 | 96.175 | 183 | 7 | 0 | 395 | 577 | 29 | 211 | 5.76e-126 | 369 |
MS.gene43382.t1 | MTR_1g102860 | 65.957 | 235 | 76 | 2 | 26 | 259 | 17 | 248 | 7.29e-103 | 314 |
MS.gene43382.t1 | MTR_1g102720 | 77.049 | 183 | 42 | 0 | 395 | 577 | 31 | 213 | 1.52e-101 | 306 |
MS.gene43382.t1 | MTR_1g071360 | 58.170 | 306 | 87 | 5 | 1 | 296 | 1 | 275 | 8.44e-98 | 301 |
MS.gene43382.t1 | MTR_1g071360 | 57.756 | 303 | 87 | 5 | 4 | 296 | 1 | 272 | 1.01e-94 | 295 |
MS.gene43382.t1 | MTR_3g104550 | 63.761 | 218 | 73 | 2 | 34 | 251 | 31 | 242 | 2.03e-92 | 289 |
MS.gene43382.t1 | MTR_5g029680 | 59.009 | 222 | 85 | 1 | 35 | 250 | 18 | 239 | 1.29e-84 | 273 |
MS.gene43382.t1 | MTR_4g077970 | 56.522 | 207 | 85 | 1 | 48 | 249 | 11 | 217 | 4.21e-74 | 244 |
MS.gene43382.t1 | MTR_1g061170 | 51.055 | 237 | 109 | 4 | 35 | 270 | 35 | 265 | 1.36e-68 | 229 |
MS.gene43382.t1 | MTR_8g087540 | 41.228 | 228 | 122 | 3 | 48 | 275 | 11 | 226 | 1.93e-50 | 179 |
MS.gene43382.t1 | MTR_8g105780 | 47.938 | 194 | 95 | 2 | 49 | 236 | 22 | 215 | 6.00e-50 | 177 |
MS.gene43382.t1 | MTR_6g086805 | 38.521 | 257 | 143 | 3 | 49 | 302 | 11 | 255 | 9.65e-50 | 176 |
MS.gene43382.t1 | MTR_6g043060 | 44.878 | 205 | 99 | 5 | 49 | 250 | 22 | 215 | 7.41e-48 | 170 |
MS.gene43382.t1 | MTR_2g100680 | 39.655 | 232 | 129 | 5 | 46 | 273 | 28 | 252 | 1.38e-47 | 172 |
MS.gene43382.t1 | MTR_8g083100 | 46.377 | 207 | 95 | 6 | 50 | 252 | 23 | 217 | 1.44e-47 | 173 |
MS.gene43382.t1 | MTR_2g100670 | 42.708 | 192 | 99 | 2 | 43 | 231 | 27 | 210 | 6.47e-44 | 159 |
MS.gene43382.t1 | MTR_2g017890 | 36.400 | 250 | 132 | 5 | 48 | 284 | 14 | 249 | 6.93e-44 | 160 |
MS.gene43382.t1 | MTR_2g100670 | 42.708 | 192 | 99 | 2 | 43 | 231 | 135 | 318 | 7.94e-43 | 159 |
MS.gene43382.t1 | MTR_5g017470 | 65.686 | 102 | 35 | 0 | 46 | 147 | 6 | 107 | 1.71e-41 | 151 |
MS.gene43382.t1 | MTR_3g101870 | 67.961 | 103 | 32 | 1 | 43 | 145 | 18 | 119 | 4.31e-41 | 153 |
MS.gene43382.t1 | MTR_5g010680 | 65.957 | 94 | 32 | 0 | 47 | 140 | 22 | 115 | 3.72e-40 | 150 |
MS.gene43382.t1 | MTR_7g091370 | 45.062 | 162 | 77 | 3 | 40 | 189 | 9 | 170 | 2.42e-38 | 141 |
MS.gene43382.t1 | MTR_1g100777 | 61.702 | 94 | 36 | 0 | 47 | 140 | 16 | 109 | 4.21e-38 | 142 |
MS.gene43382.t1 | MTR_5g089170 | 63.725 | 102 | 36 | 1 | 39 | 140 | 16 | 116 | 4.89e-38 | 141 |
MS.gene43382.t1 | MTR_0020s0020 | 60.638 | 94 | 37 | 0 | 47 | 140 | 31 | 124 | 5.05e-37 | 140 |
MS.gene43382.t1 | MTR_5g098250 | 39.106 | 179 | 109 | 0 | 399 | 577 | 35 | 213 | 3.07e-35 | 132 |
MS.gene43382.t1 | MTR_5g098250 | 39.106 | 179 | 109 | 0 | 399 | 577 | 36 | 214 | 3.29e-35 | 132 |
MS.gene43382.t1 | MTR_4g088900 | 38.462 | 182 | 97 | 5 | 47 | 224 | 31 | 201 | 1.71e-31 | 121 |
MS.gene43382.t1 | MTR_1g061170 | 43.373 | 166 | 87 | 4 | 106 | 270 | 11 | 170 | 1.77e-29 | 120 |
MS.gene43382.t1 | MTR_3g060210 | 35.429 | 175 | 112 | 1 | 399 | 572 | 34 | 208 | 5.41e-29 | 114 |
MS.gene43382.t1 | MTR_4g045757 | 56.716 | 67 | 29 | 0 | 40 | 106 | 5 | 71 | 4.08e-20 | 85.1 |
MS.gene43382.t1 | MTR_5g047190 | 45.977 | 87 | 40 | 2 | 57 | 136 | 1 | 87 | 2.72e-17 | 77.8 |
MS.gene43382.t1 | MTR_2g043940 | 31.081 | 148 | 85 | 4 | 85 | 227 | 7 | 142 | 2.97e-13 | 72.0 |
MS.gene43382.t1 | MTR_3g072600 | 27.429 | 175 | 122 | 3 | 399 | 570 | 41 | 213 | 3.77e-13 | 69.3 |
MS.gene43382.t1 | MTR_6g044340 | 32.394 | 142 | 88 | 5 | 109 | 250 | 22 | 155 | 1.45e-11 | 65.5 |
MS.gene43382.t1 | MTR_2g007210 | 24.294 | 177 | 124 | 4 | 399 | 570 | 31 | 202 | 7.62e-11 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43382.t1 | AT3G22830 | 56.481 | 324 | 104 | 5 | 24 | 318 | 36 | 351 | 2.46e-115 | 349 |
MS.gene43382.t1 | AT3G22845 | 78.689 | 183 | 39 | 0 | 395 | 577 | 32 | 214 | 6.63e-105 | 315 |
MS.gene43382.t1 | AT3G51910 | 56.923 | 260 | 77 | 5 | 39 | 297 | 19 | 244 | 4.63e-90 | 279 |
MS.gene43382.t1 | AT2G26150 | 62.037 | 216 | 80 | 2 | 36 | 250 | 31 | 245 | 1.95e-88 | 277 |
MS.gene43382.t1 | AT2G26150 | 62.037 | 216 | 80 | 2 | 36 | 250 | 31 | 245 | 1.95e-88 | 277 |
MS.gene43382.t1 | AT1G32330 | 55.645 | 248 | 93 | 5 | 18 | 250 | 4 | 249 | 1.86e-80 | 261 |
MS.gene43382.t1 | AT1G32330 | 55.645 | 248 | 93 | 5 | 18 | 250 | 4 | 249 | 2.06e-80 | 261 |
MS.gene43382.t1 | AT4G17750 | 49.265 | 272 | 111 | 5 | 26 | 276 | 23 | 288 | 4.01e-79 | 258 |
MS.gene43382.t1 | AT3G63350 | 48.746 | 279 | 117 | 4 | 27 | 302 | 6 | 261 | 1.32e-78 | 249 |
MS.gene43382.t1 | AT5G16820 | 51.923 | 260 | 109 | 5 | 27 | 276 | 10 | 263 | 1.03e-77 | 254 |
MS.gene43382.t1 | AT5G16820 | 51.923 | 260 | 109 | 5 | 27 | 276 | 10 | 263 | 1.03e-77 | 254 |
MS.gene43382.t1 | AT3G02990 | 54.348 | 230 | 98 | 3 | 48 | 270 | 22 | 251 | 2.88e-76 | 249 |
MS.gene43382.t1 | AT5G43840 | 45.583 | 283 | 121 | 7 | 35 | 303 | 5 | 268 | 1.20e-71 | 231 |
MS.gene43382.t1 | AT5G03720 | 47.410 | 251 | 122 | 4 | 35 | 282 | 41 | 284 | 5.28e-66 | 221 |
MS.gene43382.t1 | AT5G03720 | 47.410 | 251 | 122 | 4 | 35 | 282 | 41 | 284 | 5.28e-66 | 221 |
MS.gene43382.t1 | AT1G67970 | 51.579 | 190 | 90 | 2 | 49 | 237 | 19 | 207 | 7.37e-58 | 198 |
MS.gene43382.t1 | AT3G22845 | 77.358 | 106 | 24 | 0 | 395 | 500 | 32 | 137 | 7.63e-58 | 192 |
MS.gene43382.t1 | AT5G54070 | 40.000 | 220 | 119 | 3 | 42 | 258 | 63 | 272 | 2.46e-52 | 182 |
MS.gene43382.t1 | AT3G24520 | 42.857 | 203 | 92 | 2 | 49 | 251 | 17 | 195 | 1.04e-48 | 172 |
MS.gene43382.t1 | AT4G13980 | 43.689 | 206 | 103 | 4 | 50 | 252 | 24 | 219 | 2.80e-47 | 172 |
MS.gene43382.t1 | AT2G26150 | 55.944 | 143 | 61 | 2 | 109 | 250 | 49 | 190 | 5.48e-43 | 155 |
MS.gene43382.t1 | AT2G26150 | 55.944 | 143 | 61 | 2 | 109 | 250 | 49 | 190 | 5.48e-43 | 155 |
MS.gene43382.t1 | AT4G18880 | 42.932 | 191 | 109 | 0 | 41 | 231 | 7 | 197 | 3.41e-42 | 157 |
MS.gene43382.t1 | AT1G46264 | 66.667 | 102 | 34 | 0 | 39 | 140 | 24 | 125 | 8.18e-41 | 151 |
MS.gene43382.t1 | AT5G45710 | 41.146 | 192 | 111 | 2 | 48 | 239 | 12 | 201 | 9.73e-41 | 151 |
MS.gene43382.t1 | AT5G45710 | 41.146 | 192 | 111 | 2 | 48 | 239 | 12 | 201 | 9.73e-41 | 151 |
MS.gene43382.t1 | AT4G11660 | 63.636 | 99 | 35 | 1 | 47 | 145 | 57 | 154 | 5.80e-38 | 144 |
MS.gene43382.t1 | AT4G36990 | 56.522 | 115 | 43 | 1 | 47 | 161 | 12 | 119 | 1.89e-37 | 140 |
MS.gene43382.t1 | AT5G62020 | 50.000 | 130 | 61 | 1 | 47 | 172 | 21 | 150 | 2.27e-37 | 140 |
MS.gene43382.t1 | AT2G41690 | 62.766 | 94 | 35 | 0 | 47 | 140 | 38 | 131 | 2.49e-37 | 139 |
MS.gene43382.t1 | AT3G07680 | 36.313 | 179 | 114 | 0 | 399 | 577 | 30 | 208 | 1.43e-32 | 124 |
MS.gene43382.t1 | AT4G18870 | 37.795 | 127 | 77 | 2 | 49 | 173 | 146 | 272 | 2.83e-23 | 100 |
MS.gene43382.t1 | AT4G18870 | 47.126 | 87 | 45 | 1 | 50 | 136 | 14 | 99 | 1.73e-20 | 92.4 |
MS.gene43382.t1 | AT1G09580 | 27.624 | 181 | 114 | 4 | 399 | 570 | 41 | 213 | 4.72e-14 | 72.0 |
MS.gene43382.t1 | AT1G57620 | 24.719 | 178 | 123 | 3 | 399 | 570 | 36 | 208 | 1.07e-13 | 70.9 |
MS.gene43382.t1 | AT1G21900 | 24.294 | 177 | 126 | 3 | 399 | 570 | 39 | 212 | 8.68e-11 | 62.4 |
Find 118 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTGTAAATTCCACTATTTC+TGG | 0.082987 | 7.2:+14291721 | None:intergenic |
TCAGCAATCTTCACATTAAT+TGG | 0.154501 | 7.2:+14288335 | None:intergenic |
TCATGGATCATGATATATTT+TGG | 0.171436 | 7.2:-14292192 | MS.gene43382:CDS |
CCCGGTGAAAGAAGAGTATT+TGG | 0.239647 | 7.2:-14300225 | MS.gene43382:CDS |
ACGATATTCTACGCGAAGTA+TGG | 0.283229 | 7.2:-14295833 | MS.gene43382:CDS |
ACATAGAAGGACACAGTTTC+TGG | 0.285692 | 7.2:+14291671 | None:intergenic |
TTTGCAAACTCCCATTTATC+AGG | 0.290173 | 7.2:+14299336 | None:intergenic |
TGGTGCTAGCTTTGTTGTTT+GGG | 0.299201 | 7.2:-14300024 | MS.gene43382:CDS |
CATGGCGGTGACACCATTTC+TGG | 0.299446 | 7.2:-14292226 | MS.gene43382:CDS |
ACAGGATATCGTGGTTCTTC+CGG | 0.314030 | 7.2:+14295708 | None:intergenic |
TTAGCTAAGTTATGCACATT+TGG | 0.329783 | 7.2:+14291632 | None:intergenic |
GTGGTGCTAGCTTTGTTGTT+TGG | 0.347357 | 7.2:-14300025 | MS.gene43382:CDS |
TGTGTTGAAGTTGGTCGTTT+TGG | 0.363566 | 7.2:-14299210 | MS.gene43382:CDS |
CATTTGTTGCTGCTTAATTT+CGG | 0.365368 | 7.2:+14299059 | None:intergenic |
AGGAGAAGGCCAATTGAGTA+TGG | 0.367381 | 7.2:-14298934 | MS.gene43382:CDS |
CTTGATTCTCCATACTCAAT+TGG | 0.368141 | 7.2:+14298925 | None:intergenic |
TTCCTCCATTGCTTGAAGAA+TGG | 0.378113 | 7.2:+14299095 | None:intergenic |
ACAGTTTCTGGCGTAGAGAT+AGG | 0.388624 | 7.2:+14291683 | None:intergenic |
CAACAAGTCACATAGTTTCA+TGG | 0.398902 | 7.2:-14300055 | MS.gene43382:CDS |
CACAAAGACATTTGATGTTG+TGG | 0.406218 | 7.2:-14300087 | MS.gene43382:CDS |
GACAACAAAATTTCCAGAAA+TGG | 0.407913 | 7.2:+14292213 | None:intergenic |
CACTCTTTGAAGGGAACGTC+AGG | 0.413742 | 7.2:-14291764 | MS.gene43382:CDS |
TCCAAATACTCTTCTTTCAC+CGG | 0.421749 | 7.2:+14300224 | None:intergenic |
AAATGGGAGTTTGCAAATGA+AGG | 0.436132 | 7.2:-14299330 | MS.gene43382:CDS |
GCTATGGAAATGCAGGGTCT+TGG | 0.436909 | 7.2:-14298838 | MS.gene43382:CDS |
TCAAATGTCTTTGTGAGAAA+TGG | 0.443148 | 7.2:+14300095 | None:intergenic |
CACTTACTCCCCGCCTTCAA+TGG | 0.444370 | 7.2:+14294673 | None:intergenic |
AGGTCTCTGGAGAAAGCATT+TGG | 0.449261 | 7.2:+14299999 | None:intergenic |
TGCTGAGTTAAGAGAAGCAT+TGG | 0.450097 | 7.2:-14288318 | MS.gene43382:CDS |
TTGTTGTGTTTGAAGTATCT+AGG | 0.454609 | 7.2:+14299972 | None:intergenic |
GGAAGGAGCAGTGTTAGATA+TGG | 0.456890 | 7.2:-14298889 | MS.gene43382:CDS |
ATCTATCGACAACATACAAC+CGG | 0.457100 | 7.2:-14295727 | MS.gene43382:CDS |
TGGATTTGAAGTGTCGGAGT+TGG | 0.458469 | 7.2:-14298869 | MS.gene43382:CDS |
CTTACTGTGAAATCAATTCC+AGG | 0.468002 | 7.2:+14292157 | None:intergenic |
AAGAGGTGGTGGAGAGCTTG+AGG | 0.469597 | 7.2:-14298815 | MS.gene43382:CDS |
GTATCTAGGAAGAAGGTCTC+TGG | 0.470929 | 7.2:+14299986 | None:intergenic |
GTCCATCATTAAACGCTACA+TGG | 0.471552 | 7.2:-14295869 | MS.gene43382:CDS |
GATTGTTGTTGGGAAGTACT+AGG | 0.473175 | 7.2:+14299246 | None:intergenic |
TCATTTAATGGAATACTTCA+AGG | 0.474066 | 7.2:-14295771 | MS.gene43382:CDS |
AGAGCTTGAGGAAGAGATTG+AGG | 0.477721 | 7.2:-14298803 | MS.gene43382:intron |
AGTAATTGCTGAATAAAAGC+TGG | 0.482397 | 7.2:+14299006 | None:intergenic |
GACCTTGTGATGATTGTTGT+TGG | 0.495244 | 7.2:+14299235 | None:intergenic |
CAAGGTCATTGTGTTGAAGT+TGG | 0.497401 | 7.2:-14299219 | MS.gene43382:CDS |
GTGGCCAACATGAACATAGA+AGG | 0.501930 | 7.2:+14291658 | None:intergenic |
GTTATTCCACGGCCAATGGA+GGG | 0.502097 | 7.2:-14300140 | MS.gene43382:CDS |
GAGTTAAAAGCCAGAAATAG+TGG | 0.502355 | 7.2:-14291731 | MS.gene43382:CDS |
GTGCATAACTTAGCTAAAGA+TGG | 0.502933 | 7.2:-14291626 | MS.gene43382:intron |
AAATGTGGTACACTCTTTGA+AGG | 0.503212 | 7.2:-14291774 | MS.gene43382:CDS |
CTACGTCTAACGTAACGAAC+AGG | 0.503948 | 7.2:+14295690 | None:intergenic |
CAGGGTCTTGGAAGAGGTGG+TGG | 0.504100 | 7.2:-14298826 | MS.gene43382:CDS |
ACCTTGTGATGATTGTTGTT+GGG | 0.505755 | 7.2:+14299236 | None:intergenic |
GGTTGTTATTCCACGGCCAA+TGG | 0.506460 | 7.2:-14300144 | MS.gene43382:CDS |
AATTAAGCAGCAACAAATGA+TGG | 0.512562 | 7.2:-14299055 | MS.gene43382:CDS |
GCAAATGAAGGATTTCTAAG+AGG | 0.518927 | 7.2:-14299318 | MS.gene43382:CDS |
CTATAGGTGACATCTCCTGC+TGG | 0.519297 | 7.2:-14291797 | MS.gene43382:intron |
TGTTATTCCACGGCCAATGG+AGG | 0.521139 | 7.2:-14300141 | MS.gene43382:CDS |
ACTTCATGAAGCCCCTCCAT+TGG | 0.523280 | 7.2:+14300128 | None:intergenic |
ACGAAGAAATCGATCATTTG+AGG | 0.523572 | 7.2:-14299182 | MS.gene43382:CDS |
GTTTGAAGTATCTAGGAAGA+AGG | 0.525332 | 7.2:+14299979 | None:intergenic |
TGAAGCCCCTCCATTGGCCG+TGG | 0.526845 | 7.2:+14300134 | None:intergenic |
TCAGCAATTACTTCAACAGA+AGG | 0.528664 | 7.2:-14298995 | MS.gene43382:CDS |
GTTGATTGGACAAGAACCTC+TGG | 0.533008 | 7.2:-14298260 | MS.gene43382:intron |
TGAAACTATGTGACTTGTTG+TGG | 0.534841 | 7.2:+14300058 | None:intergenic |
GACAGTACTGAAGTTGAAAG+AGG | 0.540388 | 7.2:-14295804 | MS.gene43382:CDS |
AATGCTGGCTATGGAAATGC+AGG | 0.541022 | 7.2:-14298845 | MS.gene43382:CDS |
CCAAATACTCTTCTTTCACC+GGG | 0.542514 | 7.2:+14300225 | None:intergenic |
GAATCAAGTAATGGTGGTGA+TGG | 0.544567 | 7.2:-14298910 | MS.gene43382:CDS |
GAAATGCAGGGTCTTGGAAG+AGG | 0.548123 | 7.2:-14298832 | MS.gene43382:CDS |
TCAACAGAAGGAAAAGAGAA+AGG | 0.548892 | 7.2:-14298983 | MS.gene43382:CDS |
TTATTCCACGGCCAATGGAG+GGG | 0.553219 | 7.2:-14300139 | MS.gene43382:CDS |
GAAACTATGTGACTTGTTGT+GGG | 0.554070 | 7.2:+14300059 | None:intergenic |
TTCTTCAAGCAATGGAGGAA+AGG | 0.554568 | 7.2:-14299092 | MS.gene43382:CDS |
CCCCATGTAGCGTTTAATGA+TGG | 0.554838 | 7.2:+14295867 | None:intergenic |
ATGATTCAGAAGATGTAGAA+TGG | 0.562150 | 7.2:-14298064 | MS.gene43382:intron |
GATCAACGGTTGTTATTCCA+CGG | 0.563873 | 7.2:-14300151 | MS.gene43382:CDS |
TCCATCATTAAACGCTACAT+GGG | 0.565528 | 7.2:-14295868 | MS.gene43382:CDS |
TGACAAACAAGTGTTAATGA+TGG | 0.565954 | 7.2:-14299157 | MS.gene43382:CDS |
GGAGTTGGAAATGCTGGCTA+TGG | 0.567475 | 7.2:-14298854 | MS.gene43382:CDS |
ATGGAGGGGCTTCATGAAGT+AGG | 0.569714 | 7.2:-14300125 | MS.gene43382:CDS |
CAAGTAATGGTGGTGATGGA+AGG | 0.570233 | 7.2:-14298906 | MS.gene43382:CDS |
TCATCATCGACATATGAAAG+AGG | 0.574909 | 7.2:-14300185 | MS.gene43382:CDS |
ATCCATTCTTCAAGCAATGG+AGG | 0.576630 | 7.2:-14299097 | MS.gene43382:CDS |
TAGATATGGATTTGAAGTGT+CGG | 0.581257 | 7.2:-14298875 | MS.gene43382:CDS |
AAGATGCTATTACTAAGAAG+AGG | 0.582617 | 7.2:-14298954 | MS.gene43382:CDS |
GAGTGTACCACATTTCCAGC+AGG | 0.585486 | 7.2:+14291782 | None:intergenic |
AGTGTCGGAGTTGGAAATGC+TGG | 0.585981 | 7.2:-14298860 | MS.gene43382:CDS |
AAGATCCATTCTTCAAGCAA+TGG | 0.586126 | 7.2:-14299100 | MS.gene43382:CDS |
GTGTCCTTCTATGTTCATGT+TGG | 0.591878 | 7.2:-14291662 | MS.gene43382:CDS |
TATGAAAGAGGAAGTGATGA+GGG | 0.592553 | 7.2:-14300173 | MS.gene43382:CDS |
AGTTATGCACATTTGGAATG+TGG | 0.602220 | 7.2:+14291639 | None:intergenic |
GAGTACAAGCTTATTGCAAG+TGG | 0.604992 | 7.2:-14288051 | MS.gene43382:CDS |
ATAGTTTCATGGAGCAGAGG+TGG | 0.609892 | 7.2:-14300044 | MS.gene43382:CDS |
AGGAAGTGATGAGGGATCAA+CGG | 0.610055 | 7.2:-14300165 | MS.gene43382:CDS |
CACATAGTTTCATGGAGCAG+AGG | 0.610814 | 7.2:-14300047 | MS.gene43382:CDS |
GACATCTCCTGCTGGAAATG+TGG | 0.610948 | 7.2:-14291789 | MS.gene43382:CDS |
AATGTGGTACACTCTTTGAA+GGG | 0.611243 | 7.2:-14291773 | MS.gene43382:CDS |
GAGTATGGAGAATCAAGTAA+TGG | 0.613238 | 7.2:-14298919 | MS.gene43382:CDS |
ATGCAGGGTCTTGGAAGAGG+TGG | 0.614702 | 7.2:-14298829 | MS.gene43382:CDS |
CTATTACTAAGAAGAGGAGA+AGG | 0.622937 | 7.2:-14298948 | MS.gene43382:CDS |
AAAGACATTTGATGTTGTGG+AGG | 0.626606 | 7.2:-14300084 | MS.gene43382:CDS |
ATATGAAAGAGGAAGTGATG+AGG | 0.628523 | 7.2:-14300174 | MS.gene43382:CDS |
TTCGCGTAGAATATCGTGAT+CGG | 0.629332 | 7.2:+14295839 | None:intergenic |
AATGTCTTTGTGAGAAATGG+TGG | 0.633018 | 7.2:+14300098 | None:intergenic |
CTCTTTGAAGGGAACGTCAG+GGG | 0.640550 | 7.2:-14291762 | MS.gene43382:CDS |
TATGGAGAATCAAGTAATGG+TGG | 0.653267 | 7.2:-14298916 | MS.gene43382:CDS |
ACTCTTTGAAGGGAACGTCA+GGG | 0.654256 | 7.2:-14291763 | MS.gene43382:CDS |
GTCTTTGTGAGAAATGGTGG+TGG | 0.661352 | 7.2:+14300101 | None:intergenic |
TCCCAACAACAATCATCACA+AGG | 0.680191 | 7.2:-14299237 | MS.gene43382:CDS |
TAAAATGAACTATCTATACC+CGG | 0.685371 | 7.2:-14300243 | None:intergenic |
ACGTAACGAACAGGATATCG+TGG | 0.686646 | 7.2:+14295699 | None:intergenic |
GCAATGGAGGAAAGGCTACG+TGG | 0.702933 | 7.2:-14299084 | MS.gene43382:CDS |
TTTAATGGAATACTTCAAGG+AGG | 0.705753 | 7.2:-14295768 | MS.gene43382:CDS |
AAACTTGTAAGGTCTACACT+CGG | 0.707311 | 7.2:+14287988 | None:intergenic |
CCATCATTAAACGCTACATG+GGG | 0.708028 | 7.2:-14295867 | MS.gene43382:CDS |
AAACTATGTGACTTGTTGTG+GGG | 0.712916 | 7.2:+14300060 | None:intergenic |
GTATCAGAGTATGTTGAACA+TGG | 0.734375 | 7.2:-14292244 | MS.gene43382:CDS |
ATGCTGGCTATGGAAATGCA+GGG | 0.739262 | 7.2:-14298844 | MS.gene43382:CDS |
TCAGAGTATGTTGAACATGG+CGG | 0.783314 | 7.2:-14292241 | MS.gene43382:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.2 | gene | 14288001 | 14300261 | 14288001 | ID=MS.gene43382 |
chr7.2 | mRNA | 14288001 | 14300261 | 14288001 | ID=MS.gene43382.t1;Parent=MS.gene43382 |
chr7.2 | exon | 14299938 | 14300261 | 14299938 | ID=MS.gene43382.t1.exon1;Parent=MS.gene43382.t1 |
chr7.2 | CDS | 14299938 | 14300261 | 14299938 | ID=cds.MS.gene43382.t1;Parent=MS.gene43382.t1 |
chr7.2 | exon | 14298804 | 14299376 | 14298804 | ID=MS.gene43382.t1.exon2;Parent=MS.gene43382.t1 |
chr7.2 | CDS | 14298804 | 14299376 | 14298804 | ID=cds.MS.gene43382.t1;Parent=MS.gene43382.t1 |
chr7.2 | exon | 14298261 | 14298297 | 14298261 | ID=MS.gene43382.t1.exon3;Parent=MS.gene43382.t1 |
chr7.2 | CDS | 14298261 | 14298297 | 14298261 | ID=cds.MS.gene43382.t1;Parent=MS.gene43382.t1 |
chr7.2 | exon | 14298065 | 14298086 | 14298065 | ID=MS.gene43382.t1.exon4;Parent=MS.gene43382.t1 |
chr7.2 | CDS | 14298065 | 14298086 | 14298065 | ID=cds.MS.gene43382.t1;Parent=MS.gene43382.t1 |
chr7.2 | exon | 14295694 | 14295890 | 14295694 | ID=MS.gene43382.t1.exon5;Parent=MS.gene43382.t1 |
chr7.2 | CDS | 14295694 | 14295890 | 14295694 | ID=cds.MS.gene43382.t1;Parent=MS.gene43382.t1 |
chr7.2 | exon | 14294680 | 14294707 | 14294680 | ID=MS.gene43382.t1.exon6;Parent=MS.gene43382.t1 |
chr7.2 | CDS | 14294680 | 14294707 | 14294680 | ID=cds.MS.gene43382.t1;Parent=MS.gene43382.t1 |
chr7.2 | exon | 14292162 | 14292285 | 14292162 | ID=MS.gene43382.t1.exon7;Parent=MS.gene43382.t1 |
chr7.2 | CDS | 14292162 | 14292285 | 14292162 | ID=cds.MS.gene43382.t1;Parent=MS.gene43382.t1 |
chr7.2 | exon | 14291627 | 14291813 | 14291627 | ID=MS.gene43382.t1.exon8;Parent=MS.gene43382.t1 |
chr7.2 | CDS | 14291627 | 14291813 | 14291627 | ID=cds.MS.gene43382.t1;Parent=MS.gene43382.t1 |
chr7.2 | exon | 14288261 | 14288368 | 14288261 | ID=MS.gene43382.t1.exon9;Parent=MS.gene43382.t1 |
chr7.2 | CDS | 14288261 | 14288368 | 14288261 | ID=cds.MS.gene43382.t1;Parent=MS.gene43382.t1 |
chr7.2 | exon | 14288001 | 14288134 | 14288001 | ID=MS.gene43382.t1.exon10;Parent=MS.gene43382.t1 |
chr7.2 | CDS | 14288001 | 14288134 | 14288001 | ID=cds.MS.gene43382.t1;Parent=MS.gene43382.t1 |
Gene Sequence |
Protein sequence |