Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43428.t1 | XP_013458658.1 | 96 | 199 | 0 | 3 | 1 | 196 | 1 | 194 | 1.00E-100 | 376.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43428.t1 | Q84W66 | 60.9 | 207 | 62 | 5 | 5 | 194 | 4 | 208 | 4.7e-54 | 212.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43428.t1 | I3TAW1 | 96.0 | 199 | 0 | 3 | 1 | 196 | 1 | 194 | 7.3e-101 | 376.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene43428.t1 | TF | NF-YB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43428.t1 | MTR_4g133952 | 93.061 | 245 | 2 | 5 | 1 | 235 | 1 | 240 | 1.14e-164 | 454 |
| MS.gene43428.t1 | MTR_1g039040 | 81.188 | 101 | 19 | 0 | 58 | 158 | 4 | 104 | 1.52e-58 | 184 |
| MS.gene43428.t1 | MTR_2g026710 | 61.207 | 116 | 41 | 1 | 58 | 173 | 15 | 126 | 5.13e-51 | 164 |
| MS.gene43428.t1 | MTR_5g095740 | 61.739 | 115 | 44 | 0 | 41 | 155 | 4 | 118 | 2.02e-50 | 162 |
| MS.gene43428.t1 | MTR_7g061270 | 68.750 | 96 | 30 | 0 | 58 | 153 | 24 | 119 | 1.87e-49 | 160 |
| MS.gene43428.t1 | MTR_3g058980 | 70.103 | 97 | 29 | 0 | 59 | 155 | 26 | 122 | 1.90e-49 | 160 |
| MS.gene43428.t1 | MTR_7g100650 | 68.750 | 96 | 30 | 0 | 58 | 153 | 24 | 119 | 2.80e-49 | 159 |
| MS.gene43428.t1 | MTR_1g072790 | 62.069 | 116 | 42 | 1 | 40 | 153 | 7 | 122 | 9.15e-49 | 158 |
| MS.gene43428.t1 | MTR_4g119500 | 55.556 | 126 | 56 | 0 | 41 | 166 | 3 | 128 | 1.63e-48 | 156 |
| MS.gene43428.t1 | MTR_1g088860 | 60.177 | 113 | 44 | 1 | 42 | 154 | 19 | 130 | 2.44e-48 | 157 |
| MS.gene43428.t1 | MTR_8g091720 | 44.633 | 177 | 72 | 3 | 59 | 218 | 27 | 194 | 3.66e-47 | 155 |
| MS.gene43428.t1 | MTR_8g093920 | 60.606 | 99 | 39 | 0 | 59 | 157 | 39 | 137 | 1.72e-45 | 151 |
| MS.gene43428.t1 | MTR_0392s0020 | 61.616 | 99 | 38 | 0 | 58 | 156 | 16 | 114 | 3.22e-45 | 148 |
| MS.gene43428.t1 | MTR_4g133938 | 65.957 | 94 | 32 | 0 | 61 | 154 | 20 | 113 | 5.26e-44 | 145 |
| MS.gene43428.t1 | MTR_1g083070 | 51.087 | 92 | 45 | 0 | 60 | 151 | 4 | 95 | 2.49e-33 | 117 |
| MS.gene43428.t1 | MTR_1g029070 | 47.475 | 99 | 52 | 0 | 59 | 157 | 51 | 149 | 4.77e-28 | 105 |
| MS.gene43428.t1 | MTR_5g095900 | 50.000 | 92 | 46 | 0 | 57 | 148 | 13 | 104 | 9.40e-25 | 97.1 |
| MS.gene43428.t1 | MTR_1g028480 | 57.143 | 63 | 27 | 0 | 90 | 152 | 19 | 81 | 6.39e-21 | 84.7 |
| MS.gene43428.t1 | MTR_1g029100 | 40.789 | 76 | 45 | 0 | 65 | 140 | 7 | 82 | 9.08e-20 | 81.3 |
| MS.gene43428.t1 | MTR_2g056000 | 38.272 | 81 | 50 | 0 | 60 | 140 | 41 | 121 | 2.49e-17 | 77.4 |
| MS.gene43428.t1 | MTR_4g112380 | 37.975 | 79 | 49 | 0 | 60 | 138 | 11 | 89 | 1.88e-15 | 71.6 |
| MS.gene43428.t1 | MTR_5g095860 | 39.785 | 93 | 42 | 2 | 60 | 148 | 16 | 98 | 1.55e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43428.t1 | AT5G47670 | 60.849 | 212 | 62 | 6 | 5 | 198 | 4 | 212 | 4.67e-74 | 224 |
| MS.gene43428.t1 | AT5G47670 | 60.849 | 212 | 62 | 6 | 5 | 198 | 4 | 212 | 4.67e-74 | 224 |
| MS.gene43428.t1 | AT5G47670 | 65.537 | 177 | 41 | 5 | 39 | 198 | 10 | 183 | 8.53e-69 | 210 |
| MS.gene43428.t1 | AT1G21970 | 57.923 | 183 | 56 | 4 | 24 | 190 | 12 | 189 | 6.25e-64 | 199 |
| MS.gene43428.t1 | AT4G14540 | 61.739 | 115 | 44 | 0 | 42 | 156 | 3 | 117 | 1.35e-51 | 165 |
| MS.gene43428.t1 | AT2G38880 | 60.714 | 112 | 44 | 0 | 42 | 153 | 3 | 114 | 5.23e-50 | 160 |
| MS.gene43428.t1 | AT2G38880 | 60.714 | 112 | 44 | 0 | 42 | 153 | 3 | 114 | 6.35e-50 | 160 |
| MS.gene43428.t1 | AT2G38880 | 60.714 | 112 | 44 | 0 | 42 | 153 | 3 | 114 | 6.35e-50 | 160 |
| MS.gene43428.t1 | AT2G38880 | 60.714 | 112 | 44 | 0 | 42 | 153 | 3 | 114 | 6.35e-50 | 160 |
| MS.gene43428.t1 | AT5G47640 | 68.687 | 99 | 31 | 0 | 59 | 157 | 26 | 124 | 9.74e-50 | 161 |
| MS.gene43428.t1 | AT2G37060 | 61.818 | 110 | 42 | 0 | 44 | 153 | 14 | 123 | 3.36e-49 | 159 |
| MS.gene43428.t1 | AT2G37060 | 61.818 | 110 | 42 | 0 | 44 | 153 | 14 | 123 | 3.36e-49 | 159 |
| MS.gene43428.t1 | AT2G37060 | 61.818 | 110 | 42 | 0 | 44 | 153 | 14 | 123 | 3.36e-49 | 159 |
| MS.gene43428.t1 | AT3G53340 | 54.483 | 145 | 60 | 3 | 58 | 198 | 27 | 169 | 1.82e-48 | 157 |
| MS.gene43428.t1 | AT3G53340 | 54.483 | 145 | 60 | 3 | 58 | 198 | 27 | 169 | 1.82e-48 | 157 |
| MS.gene43428.t1 | AT2G38880 | 59.259 | 108 | 44 | 0 | 42 | 149 | 3 | 110 | 7.53e-47 | 152 |
| MS.gene43428.t1 | AT2G38880 | 65.591 | 93 | 32 | 0 | 58 | 150 | 19 | 111 | 3.60e-46 | 149 |
| MS.gene43428.t1 | AT2G38880 | 58.716 | 109 | 45 | 0 | 42 | 150 | 3 | 111 | 5.72e-46 | 150 |
| MS.gene43428.t1 | AT2G38880 | 58.716 | 109 | 45 | 0 | 42 | 150 | 3 | 111 | 5.72e-46 | 150 |
| MS.gene43428.t1 | AT2G38880 | 65.591 | 93 | 32 | 0 | 58 | 150 | 19 | 111 | 2.76e-45 | 149 |
| MS.gene43428.t1 | AT2G38880 | 65.591 | 93 | 32 | 0 | 58 | 150 | 19 | 111 | 2.76e-45 | 149 |
| MS.gene43428.t1 | AT2G38880 | 65.591 | 93 | 32 | 0 | 58 | 150 | 19 | 111 | 2.76e-45 | 149 |
| MS.gene43428.t1 | AT2G13570 | 62.887 | 97 | 36 | 0 | 59 | 155 | 35 | 131 | 6.23e-45 | 150 |
| MS.gene43428.t1 | AT3G53340 | 66.667 | 93 | 31 | 0 | 58 | 150 | 27 | 119 | 8.99e-45 | 146 |
| MS.gene43428.t1 | AT2G47810 | 59.615 | 104 | 42 | 0 | 51 | 154 | 42 | 145 | 9.17e-45 | 147 |
| MS.gene43428.t1 | AT3G53340 | 67.021 | 94 | 31 | 0 | 58 | 151 | 27 | 120 | 1.15e-44 | 147 |
| MS.gene43428.t1 | AT3G53340 | 67.021 | 94 | 31 | 0 | 58 | 151 | 27 | 120 | 1.15e-44 | 147 |
| MS.gene43428.t1 | AT1G09030 | 54.167 | 96 | 44 | 0 | 60 | 155 | 3 | 98 | 1.11e-37 | 129 |
| MS.gene43428.t1 | AT5G23090 | 31.731 | 104 | 69 | 1 | 60 | 161 | 11 | 114 | 5.27e-17 | 75.9 |
| MS.gene43428.t1 | AT5G23090 | 31.731 | 104 | 69 | 1 | 60 | 161 | 11 | 114 | 5.27e-17 | 75.9 |
| MS.gene43428.t1 | AT5G23090 | 31.731 | 104 | 69 | 1 | 60 | 161 | 11 | 114 | 5.27e-17 | 75.9 |
| MS.gene43428.t1 | AT5G23090 | 32.653 | 98 | 64 | 1 | 60 | 155 | 11 | 108 | 1.20e-16 | 75.1 |
| MS.gene43428.t1 | AT5G08190 | 32.653 | 98 | 64 | 1 | 60 | 155 | 11 | 108 | 2.88e-16 | 73.9 |
| MS.gene43428.t1 | AT5G08190 | 31.373 | 102 | 68 | 1 | 60 | 159 | 11 | 112 | 3.86e-16 | 73.6 |
| MS.gene43428.t1 | AT5G23090 | 32.558 | 86 | 56 | 1 | 78 | 161 | 16 | 101 | 6.47e-12 | 62.0 |
Find 61 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTATGGAATATGGAAATTT+AGG | 0.157903 | 8.4:-784627 | MS.gene43428:CDS |
| CATCCAAATGGAGGGTATTA+TGG | 0.196296 | 8.4:-784576 | MS.gene43428:CDS |
| CCAATACTCATTTATATTGA+TGG | 0.259870 | 8.4:+784430 | None:intergenic |
| GGAAAGAGGGGTATGGAATA+TGG | 0.311976 | 8.4:-784636 | MS.gene43428:CDS |
| ATCCTTATCACATTTGCAAT+TGG | 0.375002 | 8.4:+784927 | None:intergenic |
| GAGTACATCAGCTTCATAAC+TGG | 0.376606 | 8.4:-784831 | MS.gene43428:CDS |
| CCCACCAACACCAATTCTTC+TGG | 0.388520 | 8.4:-786843 | MS.gene43428:intron |
| TTATTACGTACCAGAAGAAT+TGG | 0.393519 | 8.4:+786833 | None:intergenic |
| TTCCCATAATACCCTCCATT+TGG | 0.403389 | 8.4:+784573 | None:intergenic |
| CACCCAGCAGCAATGGAAAC+TGG | 0.404381 | 8.4:-786894 | None:intergenic |
| ATCCAAATGGAGGGTATTAT+GGG | 0.410012 | 8.4:-784575 | MS.gene43428:CDS |
| CATCGTTACCGTGAGCTTGA+AGG | 0.410024 | 8.4:-784690 | MS.gene43428:CDS |
| AACTGCAGAAGATGTGCTTT+GGG | 0.416101 | 8.4:-784766 | MS.gene43428:CDS |
| GTATGGAATATGGAAATTTA+GGG | 0.421974 | 8.4:-784626 | MS.gene43428:CDS |
| GAAACTGGAGGAGGGTTTCA+TGG | 0.423802 | 8.4:-786879 | MS.gene43428:CDS |
| TAACTGCAGAAGATGTGCTT+TGG | 0.426184 | 8.4:-784767 | MS.gene43428:CDS |
| TGGTGTTGGTGGGGAGTTTG+CGG | 0.433913 | 8.4:+786853 | None:intergenic |
| TTTGTCCCACAGTTTCATAT+TGG | 0.443088 | 8.4:-784600 | MS.gene43428:CDS |
| TTTCATATTGGTCATCCAAA+TGG | 0.444564 | 8.4:-784588 | MS.gene43428:CDS |
| TGGAGGCTCATCTCATTCTC+AGG | 0.455169 | 8.4:-784487 | MS.gene43428:CDS |
| CTTTGGGCTATGAGTAAGCT+TGG | 0.475258 | 8.4:-784750 | MS.gene43428:CDS |
| TGCCAATTGCAAATGTGATA+AGG | 0.483489 | 8.4:-784929 | MS.gene43428:CDS |
| AACAATAGCCACTCATCAGC+TGG | 0.494856 | 8.4:-784999 | MS.gene43428:CDS |
| TGTACTCAGACACACACTCT+TGG | 0.503017 | 8.4:+784847 | None:intergenic |
| ACCAGAAGAATTGGTGTTGG+TGG | 0.512322 | 8.4:+786842 | None:intergenic |
| CCATCCCTCATCATATAAGT+TGG | 0.513039 | 8.4:+784543 | None:intergenic |
| CATTTGCAATTGGCATGAAA+CGG | 0.523120 | 8.4:+784937 | None:intergenic |
| CGATGAAGATACATTGTAAG+AGG | 0.530199 | 8.4:+784708 | None:intergenic |
| ATGGAATATGGAAATTTAGG+GGG | 0.530290 | 8.4:-784624 | MS.gene43428:CDS |
| AGTTGAACCATTGGGAAAGA+GGG | 0.531621 | 8.4:-784649 | MS.gene43428:CDS |
| CCAGAAGAATTGGTGTTGGT+GGG | 0.532173 | 8.4:+786843 | None:intergenic |
| GAGTTGAACCATTGGGAAAG+AGG | 0.533551 | 8.4:-784650 | MS.gene43428:CDS |
| TCCATACCCCTCTTTCCCAA+TGG | 0.539795 | 8.4:+784642 | None:intergenic |
| CTCAATGAGAGTTGAACCAT+TGG | 0.541003 | 8.4:-784658 | MS.gene43428:CDS |
| CAATGGTTCAACTCTCATTG+AGG | 0.552356 | 8.4:+784659 | None:intergenic |
| CATATTGGTCATCCAAATGG+AGG | 0.553538 | 8.4:-784585 | MS.gene43428:CDS |
| TGGAATATGGAAATTTAGGG+GGG | 0.554385 | 8.4:-784623 | MS.gene43428:CDS |
| ACCATTGGGAAAGAGGGGTA+TGG | 0.565142 | 8.4:-784643 | MS.gene43428:CDS |
| CTGCACCAACTTATATGATG+AGG | 0.576417 | 8.4:-784548 | MS.gene43428:CDS |
| GCAGCAATGGAAACTGGAGG+AGG | 0.578206 | 8.4:-786888 | None:intergenic |
| CTTGCAAATGCTGAAGCCAA+TGG | 0.581895 | 8.4:-784462 | MS.gene43428:CDS |
| GTTCTGTTCCAGCTGATGAG+TGG | 0.584456 | 8.4:+784991 | None:intergenic |
| ATGAATACGAGGCAGCAAGT+AGG | 0.584820 | 8.4:-785032 | MS.gene43428:CDS |
| TTGATGGTGATGATGACCAT+TGG | 0.595421 | 8.4:+784446 | None:intergenic |
| TCAATGAGAGTTGAACCATT+GGG | 0.596922 | 8.4:-784657 | MS.gene43428:CDS |
| TACGATCACCTTCAAGCTCA+CGG | 0.607319 | 8.4:+784682 | None:intergenic |
| AACGTTGTCAGAGAGAGCAA+AGG | 0.618049 | 8.4:-784797 | MS.gene43428:CDS |
| ATATTGGTCATCCAAATGGA+GGG | 0.621689 | 8.4:-784584 | MS.gene43428:CDS |
| CGTACCAGAAGAATTGGTGT+TGG | 0.622904 | 8.4:+786839 | None:intergenic |
| TATGGAATATGGAAATTTAG+GGG | 0.625046 | 8.4:-784625 | MS.gene43428:CDS |
| AAGACAATGAATGCATTGTG+AGG | 0.625324 | 8.4:-784968 | MS.gene43428:CDS |
| CCAACTTATATGATGAGGGA+TGG | 0.628590 | 8.4:-784543 | MS.gene43428:CDS |
| CAGAAGAATTGGTGTTGGTG+GGG | 0.631467 | 8.4:+786844 | None:intergenic |
| AGACAATGAATGCATTGTGA+GGG | 0.637888 | 8.4:-784967 | MS.gene43428:CDS |
| CAGCAATGGAAACTGGAGGA+GGG | 0.648465 | 8.4:-786887 | None:intergenic |
| TGCACCAACTTATATGATGA+GGG | 0.648613 | 8.4:-784547 | MS.gene43428:CDS |
| GGATGACCAATATGAAACTG+TGG | 0.661508 | 8.4:+784594 | None:intergenic |
| GTTGAACCATTGGGAAAGAG+GGG | 0.669657 | 8.4:-784648 | MS.gene43428:CDS |
| CAGTTTCTGAGATGAATACG+AGG | 0.679638 | 8.4:-785043 | MS.gene43428:CDS |
| CCAGCAGCAATGGAAACTGG+AGG | 0.696065 | 8.4:-786891 | None:intergenic |
| GATGACCAATATGAAACTGT+GGG | 0.700290 | 8.4:+784595 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATTCAAACTTAAGTTAT+GGG | + | chr8.4:785380-785399 | None:intergenic | 15.0% |
| !! | ATACATTAGTATATACTTTA+AGG | - | chr8.4:784651-784670 | MS.gene43428:CDS | 15.0% |
| !! | TGATTACAAAGTTAATATTA+TGG | - | chr8.4:786203-786222 | MS.gene43428:intron | 15.0% |
| !!! | TTAATTAAATATTTCTGAGA+TGG | - | chr8.4:786226-786245 | MS.gene43428:intron | 15.0% |
| !! | AACAAACAAACCAATAAAAA+CGG | + | chr8.4:785599-785618 | None:intergenic | 20.0% |
| !! | ACTATGATCATAATATTACA+AGG | - | chr8.4:785122-785141 | MS.gene43428:intron | 20.0% |
| !! | CAATATTCAAACTTAAGTTA+TGG | + | chr8.4:785381-785400 | None:intergenic | 20.0% |
| !!! | AAAGAAAAAGGCATAAAAAA+AGG | - | chr8.4:785569-785588 | MS.gene43428:intron | 20.0% |
| !!! | AAGAAAAAGGCATAAAAAAA+GGG | - | chr8.4:785570-785589 | MS.gene43428:intron | 20.0% |
| !!! | TGAATTGTGATTATGTATTT+TGG | - | chr8.4:785019-785038 | MS.gene43428:CDS | 20.0% |
| !!! | TGTTTGAATACACATATTTT+GGG | + | chr8.4:785480-785499 | None:intergenic | 20.0% |
| ! | AACAGTGATAAGATAGTTAA+CGG | + | chr8.4:785872-785891 | None:intergenic | 25.0% |
| ! | ATTGTTACTCATCAATTAAG+TGG | + | chr8.4:785264-785283 | None:intergenic | 25.0% |
| ! | GTATGGAATATGGAAATTTA+GGG | - | chr8.4:786693-786712 | MS.gene43428:intron | 25.0% |
| ! | TATGGAATATGGAAATTTAG+GGG | - | chr8.4:786694-786713 | MS.gene43428:intron | 25.0% |
| ! | TTCTTATTGGTCAAAAACAA+TGG | + | chr8.4:786055-786074 | None:intergenic | 25.0% |
| ! | TTTCTACTATGTCAATTTGT+TGG | - | chr8.4:784809-784828 | MS.gene43428:CDS | 25.0% |
| !! | GTGTTTGAATACACATATTT+TGG | + | chr8.4:785481-785500 | None:intergenic | 25.0% |
| !!! | AACCACTTTTTGACAATTTT+TGG | - | chr8.4:785970-785989 | MS.gene43428:intron | 25.0% |
| !!! | ATTTGTTGGTATTTTGCATA+AGG | - | chr8.4:784823-784842 | MS.gene43428:CDS | 25.0% |
| !!! | CAAAACAGAAGTATCTAATT+GGG | + | chr8.4:785221-785240 | None:intergenic | 25.0% |
| !!! | TGTGATTATGTATTTTGGAA+TGG | - | chr8.4:785024-785043 | MS.gene43428:CDS | 25.0% |
| AAAACAATGGAGAGAGAAAA+AGG | + | chr8.4:786042-786061 | None:intergenic | 30.0% | |
| AAGAAGACAAGCAGATAAAA+AGG | + | chr8.4:785181-785200 | None:intergenic | 30.0% | |
| AATAAGAAGTGAGAAAACCA+AGG | - | chr8.4:786067-786086 | MS.gene43428:intron | 30.0% | |
| ACGAATGCATGAAAAGAAAA+AGG | - | chr8.4:785557-785576 | MS.gene43428:intron | 30.0% | |
| AGATAAAAAGGCTTAAAAGG+TGG | + | chr8.4:785169-785188 | None:intergenic | 30.0% | |
| AGCAGATAAAAAGGCTTAAA+AGG | + | chr8.4:785172-785191 | None:intergenic | 30.0% | |
| AGTCCAAAAATAGTACATCA+AGG | + | chr8.4:785406-785425 | None:intergenic | 30.0% | |
| ATAGTTAACGGTGTATCAAA+TGG | + | chr8.4:785860-785879 | None:intergenic | 30.0% | |
| ATCCTTATCACATTTGCAAT+TGG | + | chr8.4:786395-786414 | None:intergenic | 30.0% | |
| ATGGAATATGGAAATTTAGG+GGG | - | chr8.4:786695-786714 | MS.gene43428:intron | 30.0% | |
| CAATTTCTTAAATGACACTG+TGG | + | chr8.4:785451-785470 | None:intergenic | 30.0% | |
| GGTATGGAATATGGAAATTT+AGG | - | chr8.4:786692-786711 | MS.gene43428:intron | 30.0% | |
| GTCCAAAAATAGTACATCAA+GGG | + | chr8.4:785405-785424 | None:intergenic | 30.0% | |
| GTCCAAAAATTGTCAAAAAG+TGG | + | chr8.4:785975-785994 | None:intergenic | 30.0% | |
| GTGAGAAATCAAGATCAAAT+TGG | + | chr8.4:784616-784635 | None:intergenic | 30.0% | |
| TGACTCAACACAATATCATA+TGG | + | chr8.4:784756-784775 | None:intergenic | 30.0% | |
| TTACTTGCACAACAAAACAA+AGG | + | chr8.4:784949-784968 | None:intergenic | 30.0% | |
| TTATTACGTACCAGAAGAAT+TGG | + | chr8.4:784489-784508 | None:intergenic | 30.0% | |
| TTTCATATTGGTCATCCAAA+TGG | - | chr8.4:786731-786750 | MS.gene43428:intron | 30.0% | |
| ! | CCAATTAGATACTTCTGTTT+TGG | - | chr8.4:785219-785238 | MS.gene43428:intron | 30.0% |
| !! | AAAAGGGAAACCGTTTTTAT+TGG | - | chr8.4:785586-785605 | MS.gene43428:intron | 30.0% |
| !! | CCAAAACAGAAGTATCTAAT+TGG | + | chr8.4:785222-785241 | None:intergenic | 30.0% |
| !! | TTGGTTTTCTCACTTCTTAT+TGG | + | chr8.4:786068-786087 | None:intergenic | 30.0% |
| !!! | TTCTTTTTTCTTTGCTGTGA+AGG | - | chr8.4:784583-784602 | MS.gene43428:CDS | 30.0% |
| AACAGAGGAATCAGAACTAA+AGG | + | chr8.4:785663-785682 | None:intergenic | 35.0% | |
| AACCTTGGAAAAGAAGATGA+TGG | - | chr8.4:784983-785002 | MS.gene43428:CDS | 35.0% | |
| AAGACAATGAATGCATTGTG+AGG | - | chr8.4:786351-786370 | MS.gene43428:intron | 35.0% | |
| AGACAATGAATGCATTGTGA+GGG | - | chr8.4:786352-786371 | MS.gene43428:intron | 35.0% | |
| ATATTGGTCATCCAAATGGA+GGG | - | chr8.4:786735-786754 | MS.gene43428:intron | 35.0% | |
| CAGAACTAAAGGACAAAAAG+AGG | + | chr8.4:785652-785671 | None:intergenic | 35.0% | |
| CATTTGCAATTGGCATGAAA+CGG | + | chr8.4:786385-786404 | None:intergenic | 35.0% | |
| CCTTTAATCGCATGCAATTA+GGG | - | chr8.4:785626-785645 | MS.gene43428:intron | 35.0% | |
| CGATGAAGATACATTGTAAG+AGG | + | chr8.4:786614-786633 | None:intergenic | 35.0% | |
| CTAAGACTAAGACTATAGGT+AGG | + | chr8.4:785735-785754 | None:intergenic | 35.0% | |
| GAAGATGTGAAAACTTGTCA+TGG | + | chr8.4:785349-785368 | None:intergenic | 35.0% | |
| GATGACCAATATGAAACTGT+GGG | + | chr8.4:786727-786746 | None:intergenic | 35.0% | |
| TCAATGAGAGTTGAACCATT+GGG | - | chr8.4:786662-786681 | MS.gene43428:intron | 35.0% | |
| TCCTTTAATCGCATGCAATT+AGG | - | chr8.4:785625-785644 | MS.gene43428:intron | 35.0% | |
| TCTTCAACTATAATCTCACG+TGG | - | chr8.4:785827-785846 | MS.gene43428:intron | 35.0% | |
| TGCACCAACTTATATGATGA+GGG | - | chr8.4:786772-786791 | MS.gene43428:intron | 35.0% | |
| TGCCAATTGCAAATGTGATA+AGG | - | chr8.4:786390-786409 | MS.gene43428:intron | 35.0% | |
| TGGAATATGGAAATTTAGGG+GGG | - | chr8.4:786696-786715 | MS.gene43428:intron | 35.0% | |
| TTGATTACTTGAGCAAGGTT+CGG | - | chr8.4:785505-785524 | MS.gene43428:intron | 35.0% | |
| TTGTCTTCTTTCACTCTTTC+AGG | - | chr8.4:785191-785210 | MS.gene43428:intron | 35.0% | |
| TTTGTCCCACAGTTTCATAT+TGG | - | chr8.4:786719-786738 | MS.gene43428:intron | 35.0% | |
| ! | AAAGAAGATGATGGCGTAAA+TGG | - | chr8.4:784992-785011 | MS.gene43428:CDS | 35.0% |
| ! | AAGAAGATGATGGCGTAAAT+GGG | - | chr8.4:784993-785012 | MS.gene43428:CDS | 35.0% |
| ! | GTCCCTTGATGTACTATTTT+TGG | - | chr8.4:785400-785419 | MS.gene43428:intron | 35.0% |
| ! | TCATCAGAGATTTTTGCATG+TGG | + | chr8.4:786437-786456 | None:intergenic | 35.0% |
| ! | TTTGTTGTGCAAGTAAAGCA+AGG | - | chr8.4:784953-784972 | MS.gene43428:CDS | 35.0% |
| !! | ACAGAAGTATCTAATTGGGT+TGG | + | chr8.4:785217-785236 | None:intergenic | 35.0% |
| !! | ATCCAAATGGAGGGTATTAT+GGG | - | chr8.4:786744-786763 | MS.gene43428:intron | 35.0% |
| AACTGCAGAAGATGTGCTTT+GGG | - | chr8.4:786553-786572 | MS.gene43428:intron | 40.0% | |
| AGAGAGAAAAAGGAAGAGAG+AGG | + | chr8.4:786032-786051 | None:intergenic | 40.0% | |
| AGTTGAACCATTGGGAAAGA+GGG | - | chr8.4:786670-786689 | MS.gene43428:intron | 40.0% | |
| AGTTGAAGAGAGAACGAAAG+AGG | + | chr8.4:785816-785835 | None:intergenic | 40.0% | |
| CAATGGTTCAACTCTCATTG+AGG | + | chr8.4:786663-786682 | None:intergenic | 40.0% | |
| CACAACAAAACAAAGGTGAC+TGG | + | chr8.4:784942-784961 | None:intergenic | 40.0% | |
| CATATTGGTCATCCAAATGG+AGG | - | chr8.4:786734-786753 | MS.gene43428:intron | 40.0% | |
| CCAACTTATATGATGAGGGA+TGG | - | chr8.4:786776-786795 | MS.gene43428:intron | 40.0% | |
| CCATCCCTCATCATATAAGT+TGG | + | chr8.4:786779-786798 | None:intergenic | 40.0% | |
| CCCTAATTGCATGCGATTAA+AGG | + | chr8.4:785629-785648 | None:intergenic | 40.0% | |
| CGCAATTGATTACTTGAGCA+AGG | - | chr8.4:785500-785519 | MS.gene43428:intron | 40.0% | |
| CTCAATGAGAGTTGAACCAT+TGG | - | chr8.4:786661-786680 | MS.gene43428:intron | 40.0% | |
| CTGCACCAACTTATATGATG+AGG | - | chr8.4:786771-786790 | MS.gene43428:intron | 40.0% | |
| GACAACTTTGTTGACAACCT+TGG | + | chr8.4:786087-786106 | None:intergenic | 40.0% | |
| GAGTACATCAGCTTCATAAC+TGG | - | chr8.4:786488-786507 | MS.gene43428:intron | 40.0% | |
| GATCTTGATTTCTCACATGC+AGG | - | chr8.4:784620-784639 | MS.gene43428:CDS | 40.0% | |
| GGATGACCAATATGAAACTG+TGG | + | chr8.4:786728-786747 | None:intergenic | 40.0% | |
| GGCTTAAAAGGTGGTAATAG+TGG | + | chr8.4:785160-785179 | None:intergenic | 40.0% | |
| GTGCAAGTAAAGCAAGGTAA+CGG | - | chr8.4:784959-784978 | MS.gene43428:CDS | 40.0% | |
| TAACTGCAGAAGATGTGCTT+TGG | - | chr8.4:786552-786571 | MS.gene43428:intron | 40.0% | |
| TGGGCTAAGACTAAGACTAT+AGG | + | chr8.4:785739-785758 | None:intergenic | 40.0% | |
| TTCCCATAATACCCTCCATT+TGG | + | chr8.4:786749-786768 | None:intergenic | 40.0% | |
| ! | AGACTATAGGTAGGTGTTGT+TGG | + | chr8.4:785726-785745 | None:intergenic | 40.0% |
| ! | TCAGAGATTTTTGCATGTGG+TGG | + | chr8.4:786434-786453 | None:intergenic | 40.0% |
| !! | CAGTTTCTGAGATGAATACG+AGG | - | chr8.4:786276-786295 | MS.gene43428:intron | 40.0% |
| !! | CATCCAAATGGAGGGTATTA+TGG | - | chr8.4:786743-786762 | MS.gene43428:intron | 40.0% |
| !! | GACTATAGGTAGGTGTTGTT+GGG | + | chr8.4:785725-785744 | None:intergenic | 40.0% |
| !! | TTGATGGTGATGATGACCAT+TGG | + | chr8.4:786876-786895 | None:intergenic | 40.0% |
| AACAATAGCCACTCATCAGC+TGG | - | chr8.4:786320-786339 | MS.gene43428:intron | 45.0% | |
| AACGTTGTCAGAGAGAGCAA+AGG | - | chr8.4:786522-786541 | MS.gene43428:intron | 45.0% | |
| AGAGGCAATGACAAGTAGGA+TGG | + | chr8.4:785798-785817 | None:intergenic | 45.0% | |
| ATGAATACGAGGCAGCAAGT+AGG | - | chr8.4:786287-786306 | MS.gene43428:intron | 45.0% | |
| CAAAGGTGACTGGAGTGATA+TGG | + | chr8.4:784932-784951 | None:intergenic | 45.0% | |
| CAATGACAAGTAGGATGGGT+CGG | + | chr8.4:785793-785812 | None:intergenic | 45.0% | |
| CCCAATTAGAGAGAGAGAGT+GGG | + | chr8.4:785758-785777 | None:intergenic | 45.0% | |
| CCCACTCTCTCTCTCTAATT+GGG | - | chr8.4:785755-785774 | MS.gene43428:intron | 45.0% | |
| CGAAAGAGGCAATGACAAGT+AGG | + | chr8.4:785802-785821 | None:intergenic | 45.0% | |
| CGTACCAGAAGAATTGGTGT+TGG | + | chr8.4:784483-784502 | None:intergenic | 45.0% | |
| CTGAGATGGATATTGCAGCA+GGG | - | chr8.4:786240-786259 | MS.gene43428:intron | 45.0% | |
| CTTGCAAATGCTGAAGCCAA+TGG | - | chr8.4:786857-786876 | MS.gene43428:CDS | 45.0% | |
| CTTTGGGCTATGAGTAAGCT+TGG | - | chr8.4:786569-786588 | MS.gene43428:intron | 45.0% | |
| GAGGCAATGACAAGTAGGAT+GGG | + | chr8.4:785797-785816 | None:intergenic | 45.0% | |
| GAGTTGAACCATTGGGAAAG+AGG | - | chr8.4:786669-786688 | MS.gene43428:intron | 45.0% | |
| GTTGAACCATTGGGAAAGAG+GGG | - | chr8.4:786671-786690 | MS.gene43428:intron | 45.0% | |
| TACGATCACCTTCAAGCTCA+CGG | + | chr8.4:786640-786659 | None:intergenic | 45.0% | |
| TGCGTGTATAGTAGTGACAG+AGG | - | chr8.4:784693-784712 | MS.gene43428:CDS | 45.0% | |
| TGTACTCAGACACACACTCT+TGG | + | chr8.4:786475-786494 | None:intergenic | 45.0% | |
| ! | CGCCATCATCTTCTTTTCCA+AGG | + | chr8.4:784988-785007 | None:intergenic | 45.0% |
| ! | GGAAAGAGGGGTATGGAATA+TGG | - | chr8.4:786683-786702 | MS.gene43428:intron | 45.0% |
| ! | GTAGCTTTTCTCGAGAACAG+AGG | + | chr8.4:785678-785697 | None:intergenic | 45.0% |
| ! | TCTGAGATGGATATTGCAGC+AGG | - | chr8.4:786239-786258 | MS.gene43428:intron | 45.0% |
| !! | AAGCAAGGTAACGGAAACCT+TGG | - | chr8.4:784968-784987 | MS.gene43428:CDS | 45.0% |
| !! | ACCAGAAGAATTGGTGTTGG+TGG | + | chr8.4:784480-784499 | None:intergenic | 45.0% |
| !! | ATAGGTAGGTGTTGTTGGGA+GGG | + | chr8.4:785721-785740 | None:intergenic | 45.0% |
| !! | CAGAAGAATTGGTGTTGGTG+GGG | + | chr8.4:784478-784497 | None:intergenic | 45.0% |
| !! | CCAGAAGAATTGGTGTTGGT+GGG | + | chr8.4:784479-784498 | None:intergenic | 45.0% |
| !! | TATAGGTAGGTGTTGTTGGG+AGG | + | chr8.4:785722-785741 | None:intergenic | 45.0% |
| ACCATTGGGAAAGAGGGGTA+TGG | - | chr8.4:786676-786695 | MS.gene43428:intron | 50.0% | |
| AGGTGACTGGAGTGATATGG+TGG | + | chr8.4:784929-784948 | None:intergenic | 50.0% | |
| CATCGTTACCGTGAGCTTGA+AGG | - | chr8.4:786629-786648 | MS.gene43428:intron | 50.0% | |
| CCCACCAACACCAATTCTTC+TGG | - | chr8.4:784476-784495 | MS.gene43428:CDS | 50.0% | |
| GAAACTGGAGGAGGGTTTCA+TGG | - | chr8.4:784440-784459 | MS.gene43428:CDS | 50.0% | |
| GCCCAATTAGAGAGAGAGAG+TGG | + | chr8.4:785759-785778 | None:intergenic | 50.0% | |
| GCCCACTCTCTCTCTCTAAT+TGG | - | chr8.4:785754-785773 | MS.gene43428:intron | 50.0% | |
| GTTCTGTTCCAGCTGATGAG+TGG | + | chr8.4:786331-786350 | None:intergenic | 50.0% | |
| TCCATACCCCTCTTTCCCAA+TGG | + | chr8.4:786680-786699 | None:intergenic | 50.0% | |
| TGACTGGAGTGATATGGTGG+TGG | + | chr8.4:784926-784945 | None:intergenic | 50.0% | |
| TGGAGGCTCATCTCATTCTC+AGG | - | chr8.4:786832-786851 | MS.gene43428:intron | 50.0% | |
| ACAAATGCTGCTGCTGCTGC+TGG | - | chr8.4:786812-786831 | MS.gene43428:intron | 55.0% | |
| TGACAAGTAGGATGGGTCGG+TGG | + | chr8.4:785790-785809 | None:intergenic | 55.0% | |
| !! | TGGTGTTGGTGGGGAGTTTG+CGG | + | chr8.4:784469-784488 | None:intergenic | 55.0% |
| AATGCTGCTGCTGCTGCTGG+AGG | - | chr8.4:786815-786834 | MS.gene43428:intron | 60.0% | |
| AGTAGGATGGGTCGGTGGTG+AGG | + | chr8.4:785785-785804 | None:intergenic | 60.0% | |
| GTAGGATGGGTCGGTGGTGA+GGG | + | chr8.4:785784-785803 | None:intergenic | 60.0% | |
| TAGGATGGGTCGGTGGTGAG+GGG | + | chr8.4:785783-785802 | None:intergenic | 60.0% | |
| AGGATGGGTCGGTGGTGAGG+GGG | + | chr8.4:785782-785801 | None:intergenic | 65.0% | |
| ! | GTTGGGAGGGAGCGTGTGTC+AGG | + | chr8.4:785708-785727 | None:intergenic | 65.0% |
| GGATGGGTCGGTGGTGAGGG+GGG | + | chr8.4:785781-785800 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 784437 | 786904 | 784437 | ID=MS.gene43428 |
| chr8.4 | mRNA | 784437 | 786904 | 784437 | ID=MS.gene43428.t1;Parent=MS.gene43428 |
| chr8.4 | exon | 786844 | 786904 | 786844 | ID=MS.gene43428.t1.exon1;Parent=MS.gene43428.t1 |
| chr8.4 | CDS | 786844 | 786904 | 786844 | ID=cds.MS.gene43428.t1;Parent=MS.gene43428.t1 |
| chr8.4 | exon | 784437 | 785083 | 784437 | ID=MS.gene43428.t1.exon2;Parent=MS.gene43428.t1 |
| chr8.4 | CDS | 784437 | 785083 | 784437 | ID=cds.MS.gene43428.t1;Parent=MS.gene43428.t1 |
| Gene Sequence |
| Protein sequence |
