Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43549.t1 | XP_003611597.2 | 97.6 | 368 | 9 | 0 | 3 | 370 | 8 | 375 | 4.80E-214 | 753.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43549.t1 | Q9FJX5 | 65.0 | 360 | 114 | 2 | 11 | 369 | 20 | 368 | 7.5e-139 | 495.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43549.t1 | G7K3T4 | 97.6 | 368 | 9 | 0 | 3 | 370 | 47 | 414 | 3.5e-214 | 753.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene43549.t1 | TR | TAZ |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43549.t1 | MTR_5g015680 | 97.554 | 368 | 9 | 0 | 3 | 370 | 47 | 414 | 0.0 | 754 |
| MS.gene43549.t1 | MTR_5g015680 | 97.554 | 368 | 9 | 0 | 3 | 370 | 8 | 375 | 0.0 | 753 |
| MS.gene43549.t1 | MTR_5g015680 | 98.214 | 280 | 5 | 0 | 91 | 370 | 1 | 280 | 0.0 | 572 |
| MS.gene43549.t1 | MTR_4g104140 | 44.781 | 297 | 159 | 5 | 63 | 355 | 17 | 312 | 7.33e-83 | 256 |
| MS.gene43549.t1 | MTR_4g104140 | 46.218 | 238 | 123 | 5 | 121 | 355 | 7 | 242 | 5.64e-67 | 213 |
| MS.gene43549.t1 | MTR_3g075270 | 36.923 | 260 | 163 | 1 | 103 | 362 | 7 | 265 | 4.08e-64 | 207 |
| MS.gene43549.t1 | MTR_4g005050 | 34.426 | 122 | 66 | 4 | 243 | 364 | 1598 | 1705 | 4.73e-15 | 77.4 |
| MS.gene43549.t1 | MTR_3g088660 | 29.412 | 153 | 101 | 3 | 76 | 226 | 97 | 244 | 7.21e-13 | 68.2 |
| MS.gene43549.t1 | MTR_5g085310 | 38.356 | 73 | 44 | 1 | 273 | 345 | 953 | 1024 | 1.70e-12 | 69.3 |
| MS.gene43549.t1 | MTR_3g107960 | 39.506 | 81 | 47 | 2 | 274 | 353 | 1119 | 1198 | 5.76e-12 | 67.8 |
| MS.gene43549.t1 | MTR_6g017010 | 38.889 | 72 | 43 | 1 | 274 | 345 | 685 | 755 | 9.01e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43549.t1 | AT5G67480 | 65.000 | 360 | 114 | 2 | 11 | 369 | 20 | 368 | 9.31e-178 | 498 |
| MS.gene43549.t1 | AT5G67480 | 65.000 | 360 | 114 | 2 | 11 | 369 | 20 | 368 | 9.31e-178 | 498 |
| MS.gene43549.t1 | AT5G67480 | 65.000 | 360 | 114 | 2 | 11 | 369 | 31 | 379 | 1.52e-177 | 498 |
| MS.gene43549.t1 | AT4G37610 | 60.976 | 328 | 126 | 2 | 41 | 367 | 34 | 360 | 8.44e-150 | 427 |
| MS.gene43549.t1 | AT1G05690 | 49.861 | 361 | 167 | 4 | 4 | 360 | 1 | 351 | 1.56e-110 | 327 |
| MS.gene43549.t1 | AT3G48360 | 43.789 | 322 | 163 | 8 | 56 | 361 | 28 | 347 | 2.20e-79 | 248 |
| MS.gene43549.t1 | AT5G63160 | 43.770 | 313 | 163 | 7 | 61 | 361 | 24 | 335 | 8.65e-76 | 239 |
| MS.gene43549.t1 | AT3G48360 | 45.862 | 290 | 142 | 6 | 56 | 331 | 28 | 316 | 1.55e-73 | 232 |
| MS.gene43549.t1 | AT5G63160 | 46.099 | 282 | 140 | 6 | 61 | 331 | 24 | 304 | 2.64e-71 | 225 |
| MS.gene43549.t1 | AT5G63160 | 45.020 | 251 | 127 | 7 | 120 | 361 | 2 | 250 | 8.38e-60 | 194 |
| MS.gene43549.t1 | AT3G48360 | 44.033 | 243 | 122 | 7 | 131 | 361 | 1 | 241 | 1.30e-58 | 191 |
| MS.gene43549.t1 | AT1G79000 | 29.577 | 142 | 82 | 4 | 223 | 364 | 1546 | 1669 | 6.41e-15 | 77.0 |
| MS.gene43549.t1 | AT1G79000 | 29.577 | 142 | 82 | 4 | 223 | 364 | 1570 | 1693 | 6.45e-15 | 77.0 |
| MS.gene43549.t1 | AT1G79000 | 29.577 | 142 | 82 | 4 | 223 | 364 | 1570 | 1693 | 6.48e-15 | 77.0 |
| MS.gene43549.t1 | AT1G16710 | 28.873 | 142 | 83 | 4 | 223 | 364 | 1550 | 1673 | 9.78e-13 | 70.5 |
| MS.gene43549.t1 | AT1G16710 | 28.873 | 142 | 83 | 4 | 223 | 364 | 1553 | 1676 | 9.96e-13 | 70.5 |
| MS.gene43549.t1 | AT1G16710 | 28.873 | 142 | 83 | 4 | 223 | 364 | 1553 | 1676 | 9.96e-13 | 70.5 |
| MS.gene43549.t1 | AT1G16710 | 28.873 | 142 | 83 | 4 | 223 | 364 | 1553 | 1676 | 9.96e-13 | 70.5 |
| MS.gene43549.t1 | AT1G16710 | 28.873 | 142 | 83 | 4 | 223 | 364 | 1553 | 1676 | 9.96e-13 | 70.5 |
| MS.gene43549.t1 | AT1G16710 | 28.873 | 142 | 83 | 4 | 223 | 364 | 1514 | 1637 | 1.03e-12 | 70.1 |
| MS.gene43549.t1 | AT1G16710 | 28.873 | 142 | 83 | 4 | 223 | 364 | 1514 | 1637 | 1.03e-12 | 70.1 |
| MS.gene43549.t1 | AT1G16710 | 28.873 | 142 | 83 | 4 | 223 | 364 | 1514 | 1637 | 1.03e-12 | 70.1 |
| MS.gene43549.t1 | AT1G16710 | 28.873 | 142 | 83 | 4 | 223 | 364 | 1579 | 1702 | 1.07e-12 | 70.1 |
| MS.gene43549.t1 | AT3G12980 | 36.471 | 85 | 50 | 2 | 276 | 360 | 1581 | 1661 | 4.79e-11 | 65.1 |
| MS.gene43549.t1 | AT3G12980 | 36.471 | 85 | 50 | 2 | 276 | 360 | 1500 | 1580 | 4.80e-11 | 65.1 |
Find 74 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAAATTAGATGGACAATTT+TGG | 0.186306 | 5.3:+8594216 | MS.gene43549:CDS |
| GGCGATCGATCTCAATCTTT+GGG | 0.258443 | 5.3:+8592820 | MS.gene43549:CDS |
| TGGCGATCGATCTCAATCTT+TGG | 0.276993 | 5.3:+8592819 | MS.gene43549:CDS |
| TTCGATATTTGTACTCTTCC+TGG | 0.283350 | 5.3:+8592871 | MS.gene43549:CDS |
| ATCTTGAAAACAAGAGGAAT+TGG | 0.329795 | 5.3:+8594247 | MS.gene43549:CDS |
| AAGCAATTCAAGCCCTTTGC+AGG | 0.347578 | 5.3:-8593936 | None:intergenic |
| TTGGGATTGCACCATGCTTT+CGG | 0.361459 | 5.3:+8594266 | MS.gene43549:CDS |
| AAAGAACTTCAAAACTGTTT+CGG | 0.374386 | 5.3:+8593533 | MS.gene43549:CDS |
| AGTTCTAGAAAAGGAAATTC+TGG | 0.390373 | 5.3:+8593593 | MS.gene43549:CDS |
| CGCATACTCGCAAGGATAAC+CGG | 0.402463 | 5.3:-8592208 | None:intergenic |
| GCAAGAAAGACGAAATTAGA+TGG | 0.406485 | 5.3:+8594206 | MS.gene43549:CDS |
| AAAGGAACTCTACAGAAATC+TGG | 0.408140 | 5.3:-8594061 | None:intergenic |
| ATGTGAACAGAAGCTAGAAT+TGG | 0.410891 | 5.3:+8593416 | MS.gene43549:CDS |
| AGAGATGGTTGTCGAACTAT+TGG | 0.415706 | 5.3:+8593866 | MS.gene43549:CDS |
| GGTTGCAAGTTGAGAGTCCC+TGG | 0.418562 | 5.3:+8593974 | MS.gene43549:CDS |
| CTAGTTCACATTTGTAGAGA+TGG | 0.440223 | 5.3:+8593851 | MS.gene43549:CDS |
| CGAGGCGAAGGAGGTGGTAT+CGG | 0.446905 | 5.3:-8592174 | None:intergenic |
| TCTGTAGAGTTCCTTTGTGC+AGG | 0.450851 | 5.3:+8594068 | MS.gene43549:CDS |
| TCTTGAAAACAAGAGGAATT+GGG | 0.451569 | 5.3:+8594248 | MS.gene43549:CDS |
| TTCAGCATGCCTCTCAATAC+AGG | 0.459183 | 5.3:-8592774 | None:intergenic |
| TGAGATCGATCGCCACCGAT+TGG | 0.468351 | 5.3:-8592811 | None:intergenic |
| GGAATTTGTCCTACATTTGT+TGG | 0.476702 | 5.3:+8593353 | MS.gene43549:CDS |
| GAGTCACCCAGTTCTAGAAA+AGG | 0.485308 | 5.3:+8593584 | MS.gene43549:CDS |
| GTTTGCATTAATACTGATAA+CGG | 0.495992 | 5.3:+8592330 | MS.gene43549:CDS |
| TGTGAACAGAAGCTAGAATT+GGG | 0.501782 | 5.3:+8593417 | MS.gene43549:CDS |
| GCTTTGAAGTCTTTATCATG+TGG | 0.503773 | 5.3:-8593890 | None:intergenic |
| ACACAGCTGCTTCGCCCTCT+CGG | 0.509722 | 5.3:-8592249 | None:intergenic |
| CTTTGAAGTCTTTATCATGT+GGG | 0.509997 | 5.3:-8593889 | None:intergenic |
| TTACGAGAAAGAAGAAATGA+AGG | 0.513436 | 5.3:+8593332 | MS.gene43549:CDS |
| TTCTGCAACAAGAGATCTGT+GGG | 0.515476 | 5.3:+8592275 | MS.gene43549:CDS |
| TCGCCTCGATCAGCAGCAAC+CGG | 0.515743 | 5.3:+8592189 | MS.gene43549:CDS |
| GTTGCAAGTTGAGAGTCCCT+GGG | 0.520761 | 5.3:+8593975 | MS.gene43549:CDS |
| CACATTCACGCTTCAAGTGA+GGG | 0.529306 | 5.3:-8593398 | None:intergenic |
| GTGCTCATTGCAAGAGGATG+TGG | 0.529329 | 5.3:+8594002 | MS.gene43549:CDS |
| ATAAGCTGATGGCTAACATT+CGG | 0.529455 | 5.3:+8592133 | None:intergenic |
| AAAACTGTTTCGGAGTCAGA+AGG | 0.543714 | 5.3:+8593543 | MS.gene43549:CDS |
| GAGAAAGCACCAACAAATGT+AGG | 0.546221 | 5.3:-8593362 | None:intergenic |
| CAAGAGGATGTGGCAACTGT+TGG | 0.547416 | 5.3:+8594012 | MS.gene43549:CDS |
| AGCAAGCAAATCGTTCCAAT+CGG | 0.549306 | 5.3:+8592796 | MS.gene43549:CDS |
| GTTGCTGCTGATCGAGGCGA+AGG | 0.550246 | 5.3:-8592186 | None:intergenic |
| TTTGCAATTATACGATGCAA+TGG | 0.552736 | 5.3:+8593823 | MS.gene43549:CDS |
| GTAGGTATACTTCCTGCAAA+GGG | 0.554458 | 5.3:+8593924 | MS.gene43549:CDS |
| GCTGATCGAGGCGAAGGAGG+TGG | 0.554736 | 5.3:-8592180 | None:intergenic |
| ATCAGTATTAATGCAAACAT+CGG | 0.559796 | 5.3:-8592325 | None:intergenic |
| AGGAAGTATACCTACACGGC+TGG | 0.561333 | 5.3:-8593916 | None:intergenic |
| GAAAAGATCTTGAAAACAAG+AGG | 0.566400 | 5.3:+8594241 | MS.gene43549:CDS |
| TTCATCGCCGCATACTCGCA+AGG | 0.575928 | 5.3:-8592216 | None:intergenic |
| ATGAATAATTTATCACCGAG+AGG | 0.575964 | 5.3:+8592234 | MS.gene43549:CDS |
| CTGATCAGAGTAAGAAGGAG+AGG | 0.579129 | 5.3:+8593771 | MS.gene43549:intron |
| GCTGCTGATCGAGGCGAAGG+AGG | 0.588376 | 5.3:-8592183 | None:intergenic |
| TGTAGGTATACTTCCTGCAA+AGG | 0.593266 | 5.3:+8593923 | MS.gene43549:CDS |
| TCACATTCACGCTTCAAGTG+AGG | 0.596344 | 5.3:-8593399 | None:intergenic |
| ATTGACTGATCAGAGTAAGA+AGG | 0.599953 | 5.3:+8593766 | MS.gene43549:intron |
| CGGTTATCCTTGCGAGTATG+CGG | 0.602040 | 5.3:+8592209 | MS.gene43549:CDS |
| CTGTTTCGGAGTCAGAAGGA+TGG | 0.605228 | 5.3:+8593547 | MS.gene43549:CDS |
| AAGCAAATCGTTCCAATCGG+TGG | 0.607764 | 5.3:+8592799 | MS.gene43549:CDS |
| TCAAAGCAAACCAGCCGTGT+AGG | 0.611970 | 5.3:+8593906 | MS.gene43549:CDS |
| TGTCATTGTGGCCGAAAGCA+TGG | 0.612906 | 5.3:-8594277 | None:intergenic |
| TAACCGGTTGCTGCTGATCG+AGG | 0.614451 | 5.3:-8592192 | None:intergenic |
| GGGGTTGTGCTCATTGCAAG+AGG | 0.622565 | 5.3:+8593996 | MS.gene43549:CDS |
| AAAACTCGTACTGCATCATG+TGG | 0.623793 | 5.3:-8592846 | None:intergenic |
| GTGGCTTCTCCTGTATTGAG+AGG | 0.626268 | 5.3:+8592765 | MS.gene43549:CDS |
| TACATCAACTAGATTATCCA+CGG | 0.627170 | 5.3:-8593448 | None:intergenic |
| GCGATCGATCTCAATCTTTG+GGG | 0.627705 | 5.3:+8592821 | MS.gene43549:CDS |
| CTTCTGCAACAAGAGATCTG+TGG | 0.636785 | 5.3:+8592274 | MS.gene43549:CDS |
| TGAATAATTTATCACCGAGA+GGG | 0.647099 | 5.3:+8592235 | MS.gene43549:CDS |
| TGCATTAATACTGATAACGG+TGG | 0.661014 | 5.3:+8592333 | MS.gene43549:CDS |
| TTGCAAGTTGAGAGTCCCTG+GGG | 0.661286 | 5.3:+8593976 | MS.gene43549:CDS |
| TAATATTGTTACCTGCACAA+AGG | 0.667930 | 5.3:-8594079 | None:intergenic |
| AGAATTGGGTTTACTCACCG+TGG | 0.691467 | 5.3:+8593431 | MS.gene43549:CDS |
| TTGCAGGAAGTATACCTACA+CGG | 0.699708 | 5.3:-8593920 | None:intergenic |
| TGCAAGTTGAGAGTCCCTGG+GGG | 0.717689 | 5.3:+8593977 | MS.gene43549:CDS |
| CATTACTGTGTGATGCTCCG+CGG | 0.722450 | 5.3:+8593481 | MS.gene43549:CDS |
| TGACAAATGAGACTGAGCCG+CGG | 0.747022 | 5.3:-8593498 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTACACAATAATAGATAATT+AGG | + | chr5.3:8593693-8593712 | MS.gene43549:intron | 15.0% |
| !!! | AAAAAAAATTGAGTTTTGTT+TGG | + | chr5.3:8593157-8593176 | MS.gene43549:intron | 15.0% |
| !!! | AAAAAAATTGAGTTTTGTTT+GGG | + | chr5.3:8593158-8593177 | MS.gene43549:intron | 15.0% |
| !!! | AAACTTTAAGAAATTTCAAT+CGG | + | chr5.3:8593051-8593070 | MS.gene43549:intron | 15.0% |
| !!! | TAATTATCTTTTTTTGGTTA+CGG | - | chr5.3:8593719-8593738 | None:intergenic | 15.0% |
| !!! | TATGCAATTAATCAATTTTA+AGG | + | chr5.3:8592546-8592565 | MS.gene43549:intron | 15.0% |
| !! | GTAACCAAAAAAAGATAATT+AGG | + | chr5.3:8593718-8593737 | MS.gene43549:intron | 20.0% |
| !!! | AAAAAATTGAGTTTTGTTTG+GGG | + | chr5.3:8593159-8593178 | MS.gene43549:intron | 20.0% |
| !!! | ATGATTTTGAGGTTTATAAA+GGG | - | chr5.3:8592907-8592926 | None:intergenic | 20.0% |
| !!! | ATTTCTTAAAGTTTTCCTAT+CGG | - | chr5.3:8593045-8593064 | None:intergenic | 20.0% |
| !!! | TATGATTTTGAGGTTTATAA+AGG | - | chr5.3:8592908-8592927 | None:intergenic | 20.0% |
| !!! | TGAAGTTCTTTAGTATTTTA+CGG | - | chr5.3:8593524-8593543 | None:intergenic | 20.0% |
| ! | AAAGAACTTCAAAACTGTTT+CGG | + | chr5.3:8593533-8593552 | MS.gene43549:CDS | 25.0% |
| ! | AACTGTGAAATTGAAACAAA+TGG | + | chr5.3:8593127-8593146 | MS.gene43549:intron | 25.0% |
| ! | ATCAGTATTAATGCAAACAT+CGG | - | chr5.3:8592328-8592347 | None:intergenic | 25.0% |
| ! | ATTCAAAAGTAGTTAGACAA+TGG | - | chr5.3:8593744-8593763 | None:intergenic | 25.0% |
| ! | GTTTGCATTAATACTGATAA+CGG | + | chr5.3:8592330-8592349 | MS.gene43549:CDS | 25.0% |
| ! | TCACTTTATACTATATGATC+AGG | + | chr5.3:8592740-8592759 | MS.gene43549:intron | 25.0% |
| ! | TGATTGAAGAAGAAAATGTA+AGG | + | chr5.3:8593622-8593641 | MS.gene43549:intron | 25.0% |
| ! | TGATTGTATTTATTTCAGCT+CGG | + | chr5.3:8594117-8594136 | MS.gene43549:intron | 25.0% |
| !! | CAAACATTCTTATGATTTTG+AGG | - | chr5.3:8592918-8592937 | None:intergenic | 25.0% |
| !! | GTAACAAATCTTTTCATTTC+AGG | + | chr5.3:8594155-8594174 | MS.gene43549:intron | 25.0% |
| !!! | AAAAATTGAGTTTTGTTTGG+GGG | + | chr5.3:8593160-8593179 | MS.gene43549:intron | 25.0% |
| !!! | ATGGCCTAATTATCTTTTTT+TGG | - | chr5.3:8593725-8593744 | None:intergenic | 25.0% |
| ATCTTGAAAACAAGAGGAAT+TGG | + | chr5.3:8594247-8594266 | MS.gene43549:CDS | 30.0% | |
| ATGAATAATTTATCACCGAG+AGG | + | chr5.3:8592234-8592253 | MS.gene43549:CDS | 30.0% | |
| CAGAAAAATGAATGAAAGAG+AGG | + | chr5.3:8593796-8593815 | MS.gene43549:CDS | 30.0% | |
| CTTTATACTATATGATCAGG+CGG | + | chr5.3:8592743-8592762 | MS.gene43549:intron | 30.0% | |
| GAAAAGATCTTGAAAACAAG+AGG | + | chr5.3:8594241-8594260 | MS.gene43549:CDS | 30.0% | |
| GTGCATATACAAAATCAAGT+GGG | - | chr5.3:8592401-8592420 | None:intergenic | 30.0% | |
| TAAGAAATTTCAATCGGTAG+TGG | + | chr5.3:8593057-8593076 | MS.gene43549:intron | 30.0% | |
| TAATATTGTTACCTGCACAA+AGG | - | chr5.3:8594082-8594101 | None:intergenic | 30.0% | |
| TACATCAACTAGATTATCCA+CGG | - | chr5.3:8593451-8593470 | None:intergenic | 30.0% | |
| TACTTCGAAATTGATCTACT+CGG | - | chr5.3:8593103-8593122 | None:intergenic | 30.0% | |
| TCTTGAAAACAAGAGGAATT+GGG | + | chr5.3:8594248-8594267 | MS.gene43549:CDS | 30.0% | |
| TCTTTCTCGTAACTGAAAAA+AGG | - | chr5.3:8593324-8593343 | None:intergenic | 30.0% | |
| TCTTTGAACGAATTAGTAGT+AGG | + | chr5.3:8592491-8592510 | MS.gene43549:intron | 30.0% | |
| TGAATAATTTATCACCGAGA+GGG | + | chr5.3:8592235-8592254 | MS.gene43549:CDS | 30.0% | |
| TTACGAGAAAGAAGAAATGA+AGG | + | chr5.3:8593332-8593351 | MS.gene43549:CDS | 30.0% | |
| TTTGCAATTATACGATGCAA+TGG | + | chr5.3:8593823-8593842 | MS.gene43549:CDS | 30.0% | |
| ! | AGTAGGCTCAAAATTTTCAT+AGG | + | chr5.3:8592508-8592527 | MS.gene43549:intron | 30.0% |
| ! | CACTTGATTTTGTATATGCA+CGG | + | chr5.3:8592400-8592419 | MS.gene43549:intron | 30.0% |
| ! | CGAAATTAGATGGACAATTT+TGG | + | chr5.3:8594216-8594235 | MS.gene43549:CDS | 30.0% |
| !! | AGTTCTAGAAAAGGAAATTC+TGG | + | chr5.3:8593593-8593612 | MS.gene43549:CDS | 30.0% |
| !! | CTTTGAAGTCTTTATCATGT+GGG | - | chr5.3:8593892-8593911 | None:intergenic | 30.0% |
| !!! | AAAATTGAGTTTTGTTTGGG+GGG | + | chr5.3:8593161-8593180 | MS.gene43549:intron | 30.0% |
| !!! | AGAATTTCCTTTTCTAGAAC+TGG | - | chr5.3:8593594-8593613 | None:intergenic | 30.0% |
| !!! | GAATTTCCTTTTCTAGAACT+GGG | - | chr5.3:8593593-8593612 | None:intergenic | 30.0% |
| AAAGGAACTCTACAGAAATC+TGG | - | chr5.3:8594064-8594083 | None:intergenic | 35.0% | |
| ATAAAGGGAACAAACATACC+AGG | - | chr5.3:8592892-8592911 | None:intergenic | 35.0% | |
| ATGTGAACAGAAGCTAGAAT+TGG | + | chr5.3:8593416-8593435 | MS.gene43549:CDS | 35.0% | |
| ATTGACTGATCAGAGTAAGA+AGG | + | chr5.3:8593766-8593785 | MS.gene43549:intron | 35.0% | |
| CGTGCATATACAAAATCAAG+TGG | - | chr5.3:8592402-8592421 | None:intergenic | 35.0% | |
| CTAGTTCACATTTGTAGAGA+TGG | + | chr5.3:8593851-8593870 | MS.gene43549:CDS | 35.0% | |
| GCAAGAAAGACGAAATTAGA+TGG | + | chr5.3:8594206-8594225 | MS.gene43549:CDS | 35.0% | |
| GGAATTTGTCCTACATTTGT+TGG | + | chr5.3:8593353-8593372 | MS.gene43549:CDS | 35.0% | |
| GTTTGTCTCCTTGTACTATA+GGG | + | chr5.3:8592933-8592952 | MS.gene43549:intron | 35.0% | |
| TGTGAACAGAAGCTAGAATT+GGG | + | chr5.3:8593417-8593436 | MS.gene43549:CDS | 35.0% | |
| TGTTTGTCTCCTTGTACTAT+AGG | + | chr5.3:8592932-8592951 | MS.gene43549:intron | 35.0% | |
| TTCGATATTTGTACTCTTCC+TGG | + | chr5.3:8592871-8592890 | MS.gene43549:CDS | 35.0% | |
| ! | CTAGGCTTGATAATATTCTC+TGG | + | chr5.3:8592956-8592975 | MS.gene43549:intron | 35.0% |
| !! | GAAATTTTGATGTACCTAGC+TGG | - | chr5.3:8592432-8592451 | None:intergenic | 35.0% |
| !! | GCTTTGAAGTCTTTATCATG+TGG | - | chr5.3:8593893-8593912 | None:intergenic | 35.0% |
| !! | TGCATTAATACTGATAACGG+TGG | + | chr5.3:8592333-8592352 | MS.gene43549:CDS | 35.0% |
| AAAACTCGTACTGCATCATG+TGG | - | chr5.3:8592849-8592868 | None:intergenic | 40.0% | |
| AAAACTGTTTCGGAGTCAGA+AGG | + | chr5.3:8593543-8593562 | MS.gene43549:CDS | 40.0% | |
| AGAGATGGTTGTCGAACTAT+TGG | + | chr5.3:8593866-8593885 | MS.gene43549:CDS | 40.0% | |
| AGCAAGCAAATCGTTCCAAT+CGG | + | chr5.3:8592796-8592815 | MS.gene43549:CDS | 40.0% | |
| ATTGATCTACTCGGTTTAGC+TGG | - | chr5.3:8593094-8593113 | None:intergenic | 40.0% | |
| GAGATCAACATAGCTGATCA+AGG | + | chr5.3:8593192-8593211 | MS.gene43549:intron | 40.0% | |
| GTAGGTATACTTCCTGCAAA+GGG | + | chr5.3:8593924-8593943 | MS.gene43549:CDS | 40.0% | |
| TACATCCATTCATTGCCGAT+AGG | + | chr5.3:8593027-8593046 | MS.gene43549:intron | 40.0% | |
| TATACTATATGATCAGGCGG+TGG | + | chr5.3:8592746-8592765 | MS.gene43549:intron | 40.0% | |
| TGTAGGTATACTTCCTGCAA+AGG | + | chr5.3:8593923-8593942 | MS.gene43549:CDS | 40.0% | |
| TTCTGCAACAAGAGATCTGT+GGG | + | chr5.3:8592275-8592294 | MS.gene43549:CDS | 40.0% | |
| ! | GTTTTCCTATCGGCAATGAA+TGG | - | chr5.3:8593035-8593054 | None:intergenic | 40.0% |
| ! | TTGCAGGAAGTATACCTACA+CGG | - | chr5.3:8593923-8593942 | None:intergenic | 40.0% |
| !! | GAGAAAGCACCAACAAATGT+AGG | - | chr5.3:8593365-8593384 | None:intergenic | 40.0% |
| !! | TTGCTTGTTCGTCATTTTGC+TGG | + | chr5.3:8593953-8593972 | MS.gene43549:CDS | 40.0% |
| AAGCAAATCGTTCCAATCGG+TGG | + | chr5.3:8592799-8592818 | MS.gene43549:CDS | 45.0% | |
| AAGCAATTCAAGCCCTTTGC+AGG | - | chr5.3:8593939-8593958 | None:intergenic | 45.0% | |
| AAGCCTAGCCCTATAGTACA+AGG | - | chr5.3:8592944-8592963 | None:intergenic | 45.0% | |
| AGAATTGGGTTTACTCACCG+TGG | + | chr5.3:8593431-8593450 | MS.gene43549:CDS | 45.0% | |
| CACATTCACGCTTCAAGTGA+GGG | - | chr5.3:8593401-8593420 | None:intergenic | 45.0% | |
| CTCTTAAGCAGTGACATCTG+TGG | - | chr5.3:8592572-8592591 | None:intergenic | 45.0% | |
| CTGATCAGAGTAAGAAGGAG+AGG | + | chr5.3:8593771-8593790 | MS.gene43549:intron | 45.0% | |
| CTTCTGCAACAAGAGATCTG+TGG | + | chr5.3:8592274-8592293 | MS.gene43549:CDS | 45.0% | |
| GCGATCGATCTCAATCTTTG+GGG | + | chr5.3:8592821-8592840 | MS.gene43549:CDS | 45.0% | |
| GGCGATCGATCTCAATCTTT+GGG | + | chr5.3:8592820-8592839 | MS.gene43549:CDS | 45.0% | |
| TCACATTCACGCTTCAAGTG+AGG | - | chr5.3:8593402-8593421 | None:intergenic | 45.0% | |
| TCTCCTTGTACTATAGGGCT+AGG | + | chr5.3:8592938-8592957 | MS.gene43549:intron | 45.0% | |
| TCTGTAGAGTTCCTTTGTGC+AGG | + | chr5.3:8594068-8594087 | MS.gene43549:CDS | 45.0% | |
| TGGCGATCGATCTCAATCTT+TGG | + | chr5.3:8592819-8592838 | MS.gene43549:CDS | 45.0% | |
| TTCAGCATGCCTCTCAATAC+AGG | - | chr5.3:8592777-8592796 | None:intergenic | 45.0% | |
| TTGGGATTGCACCATGCTTT+CGG | + | chr5.3:8594266-8594285 | MS.gene43549:CDS | 45.0% | |
| !! | GAGTCACCCAGTTCTAGAAA+AGG | + | chr5.3:8593584-8593603 | MS.gene43549:CDS | 45.0% |
| !!! | ATTGAGTTTTGTTTGGGGGG+TGG | + | chr5.3:8593164-8593183 | MS.gene43549:intron | 45.0% |
| !!! | GGGAGCGTCTTTTCAATGAA+GGG | + | chr5.3:8592295-8592314 | MS.gene43549:CDS | 45.0% |
| !!! | TGGGAGCGTCTTTTCAATGA+AGG | + | chr5.3:8592294-8592313 | MS.gene43549:CDS | 45.0% |
| !!! | TTGAGTTTTGTTTGGGGGGT+GGG | + | chr5.3:8593165-8593184 | MS.gene43549:intron | 45.0% |
| !! | AAACAAAAAATTAATAATTA+AGG | - | chr5.3:8593661-8593680 | None:intergenic | 5.0% |
| CAAGAGGATGTGGCAACTGT+TGG | + | chr5.3:8594012-8594031 | MS.gene43549:CDS | 50.0% | |
| CATTACTGTGTGATGCTCCG+CGG | + | chr5.3:8593481-8593500 | MS.gene43549:CDS | 50.0% | |
| CGCATACTCGCAAGGATAAC+CGG | - | chr5.3:8592211-8592230 | None:intergenic | 50.0% | |
| CGGTTATCCTTGCGAGTATG+CGG | + | chr5.3:8592209-8592228 | MS.gene43549:CDS | 50.0% | |
| CTGTTTCGGAGTCAGAAGGA+TGG | + | chr5.3:8593547-8593566 | MS.gene43549:CDS | 50.0% | |
| GTGCTCATTGCAAGAGGATG+TGG | + | chr5.3:8594002-8594021 | MS.gene43549:CDS | 50.0% | |
| GTGGCTTCTCCTGTATTGAG+AGG | + | chr5.3:8592765-8592784 | MS.gene43549:CDS | 50.0% | |
| TCAAAGCAAACCAGCCGTGT+AGG | + | chr5.3:8593906-8593925 | MS.gene43549:CDS | 50.0% | |
| TCTACTCGGTTTAGCTGGTG+AGG | - | chr5.3:8593089-8593108 | None:intergenic | 50.0% | |
| TGACAAATGAGACTGAGCCG+CGG | - | chr5.3:8593501-8593520 | None:intergenic | 50.0% | |
| ! | AGGAAGTATACCTACACGGC+TGG | - | chr5.3:8593919-8593938 | None:intergenic | 50.0% |
| ! | GTTGCAAGTTGAGAGTCCCT+GGG | + | chr5.3:8593975-8593994 | MS.gene43549:CDS | 50.0% |
| ! | TTGCAAGTTGAGAGTCCCTG+GGG | + | chr5.3:8593976-8593995 | MS.gene43549:CDS | 50.0% |
| !!! | TGAGTTTTGTTTGGGGGGTG+GGG | + | chr5.3:8593166-8593185 | MS.gene43549:intron | 50.0% |
| GGGGTTGTGCTCATTGCAAG+AGG | + | chr5.3:8593996-8594015 | MS.gene43549:CDS | 55.0% | |
| TAACCGGTTGCTGCTGATCG+AGG | - | chr5.3:8592195-8592214 | None:intergenic | 55.0% | |
| TGAGATCGATCGCCACCGAT+TGG | - | chr5.3:8592814-8592833 | None:intergenic | 55.0% | |
| TGCAATGAGCACAACCCCCA+GGG | - | chr5.3:8593994-8594013 | None:intergenic | 55.0% | |
| TTCATCGCCGCATACTCGCA+AGG | - | chr5.3:8592219-8592238 | None:intergenic | 55.0% | |
| TTGCAATGAGCACAACCCCC+AGG | - | chr5.3:8593995-8594014 | None:intergenic | 55.0% | |
| ! | GGTTGCAAGTTGAGAGTCCC+TGG | + | chr5.3:8593974-8593993 | MS.gene43549:CDS | 55.0% |
| ! | TGCAAGTTGAGAGTCCCTGG+GGG | + | chr5.3:8593977-8593996 | MS.gene43549:CDS | 55.0% |
| !!! | GAGTTTTGTTTGGGGGGTGG+GGG | + | chr5.3:8593167-8593186 | MS.gene43549:intron | 55.0% |
| ACACAGCTGCTTCGCCCTCT+CGG | - | chr5.3:8592252-8592271 | None:intergenic | 60.0% | |
| ATGCACGGATGCTGCCAGCT+AGG | + | chr5.3:8592415-8592434 | MS.gene43549:intron | 60.0% | |
| CGAGGCGAAGGAGGTGGTAT+CGG | - | chr5.3:8592177-8592196 | None:intergenic | 60.0% | |
| GTTGCTGCTGATCGAGGCGA+AGG | - | chr5.3:8592189-8592208 | None:intergenic | 60.0% | |
| TCGCCTCGATCAGCAGCAAC+CGG | + | chr5.3:8592189-8592208 | MS.gene43549:CDS | 60.0% | |
| !! | TTTTGTTTGGGGGGTGGGGG+AGG | + | chr5.3:8593170-8593189 | MS.gene43549:intron | 60.0% |
| GCTGATCGAGGCGAAGGAGG+TGG | - | chr5.3:8592183-8592202 | None:intergenic | 65.0% | |
| GCTGCTGATCGAGGCGAAGG+AGG | - | chr5.3:8592186-8592205 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 8592141 | 8594297 | 8592141 | ID=MS.gene43549 |
| chr5.3 | mRNA | 8592141 | 8594297 | 8592141 | ID=MS.gene43549.t1;Parent=MS.gene43549 |
| chr5.3 | exon | 8592141 | 8592383 | 8592141 | ID=MS.gene43549.t1.exon1;Parent=MS.gene43549.t1 |
| chr5.3 | CDS | 8592141 | 8592383 | 8592141 | ID=cds.MS.gene43549.t1;Parent=MS.gene43549.t1 |
| chr5.3 | exon | 8592762 | 8592892 | 8592762 | ID=MS.gene43549.t1.exon2;Parent=MS.gene43549.t1 |
| chr5.3 | CDS | 8592762 | 8592892 | 8592762 | ID=cds.MS.gene43549.t1;Parent=MS.gene43549.t1 |
| chr5.3 | exon | 8593332 | 8593638 | 8593332 | ID=MS.gene43549.t1.exon3;Parent=MS.gene43549.t1 |
| chr5.3 | CDS | 8593332 | 8593638 | 8593332 | ID=cds.MS.gene43549.t1;Parent=MS.gene43549.t1 |
| chr5.3 | exon | 8593779 | 8594089 | 8593779 | ID=MS.gene43549.t1.exon4;Parent=MS.gene43549.t1 |
| chr5.3 | CDS | 8593779 | 8594089 | 8593779 | ID=cds.MS.gene43549.t1;Parent=MS.gene43549.t1 |
| chr5.3 | exon | 8594177 | 8594297 | 8594177 | ID=MS.gene43549.t1.exon5;Parent=MS.gene43549.t1 |
| chr5.3 | CDS | 8594177 | 8594297 | 8594177 | ID=cds.MS.gene43549.t1;Parent=MS.gene43549.t1 |
| Gene Sequence |
| Protein sequence |
