Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43673.t1 | XP_004490516.1 | 77.2 | 123 | 27 | 1 | 1 | 122 | 479 | 601 | 5.40E-43 | 183.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43673.t1 | Q9LVM0 | 63.2 | 114 | 40 | 2 | 3 | 116 | 518 | 629 | 1.3e-29 | 130.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43673.t1 | A0A1S2XK00 | 77.2 | 123 | 27 | 1 | 1 | 122 | 479 | 601 | 3.9e-43 | 183.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43673.t1 | MTR_5g068210 | 76.230 | 122 | 28 | 1 | 1 | 121 | 471 | 592 | 2.22e-59 | 192 |
MS.gene43673.t1 | MTR_3g093710 | 67.480 | 123 | 36 | 4 | 1 | 122 | 501 | 620 | 2.02e-48 | 164 |
MS.gene43673.t1 | MTR_5g075630 | 64.957 | 117 | 39 | 2 | 2 | 118 | 515 | 629 | 4.32e-42 | 147 |
MS.gene43673.t1 | MTR_3g062500 | 63.248 | 117 | 41 | 2 | 2 | 118 | 514 | 628 | 6.62e-42 | 146 |
MS.gene43673.t1 | MTR_3g062500 | 63.248 | 117 | 41 | 2 | 2 | 118 | 524 | 638 | 9.26e-42 | 146 |
MS.gene43673.t1 | MTR_7g073710 | 62.162 | 111 | 38 | 4 | 7 | 116 | 499 | 606 | 1.92e-39 | 139 |
MS.gene43673.t1 | MTR_8g107470 | 52.459 | 122 | 56 | 2 | 2 | 123 | 533 | 652 | 4.86e-38 | 135 |
MS.gene43673.t1 | MTR_4g113100 | 56.410 | 117 | 49 | 2 | 2 | 118 | 505 | 619 | 3.90e-37 | 133 |
MS.gene43673.t1 | MTR_5g009660 | 54.237 | 118 | 52 | 2 | 1 | 118 | 459 | 574 | 9.24e-37 | 132 |
MS.gene43673.t1 | MTR_5g078080 | 48.780 | 123 | 61 | 2 | 2 | 124 | 498 | 618 | 4.21e-36 | 130 |
MS.gene43673.t1 | MTR_3g090665 | 57.273 | 110 | 45 | 2 | 2 | 111 | 215 | 322 | 2.88e-35 | 124 |
MS.gene43673.t1 | MTR_3g090660 | 55.462 | 119 | 50 | 3 | 2 | 120 | 481 | 596 | 3.48e-35 | 127 |
MS.gene43673.t1 | MTR_6g470960 | 50.000 | 122 | 59 | 2 | 2 | 123 | 536 | 655 | 3.58e-35 | 127 |
MS.gene43673.t1 | MTR_1g110280 | 54.167 | 120 | 48 | 3 | 2 | 116 | 520 | 637 | 1.17e-34 | 126 |
MS.gene43673.t1 | MTR_8g099195 | 54.237 | 118 | 52 | 2 | 1 | 118 | 482 | 597 | 1.25e-34 | 126 |
MS.gene43673.t1 | MTR_1g028890 | 56.034 | 116 | 47 | 3 | 3 | 118 | 447 | 558 | 1.28e-32 | 120 |
MS.gene43673.t1 | MTR_5g055470 | 50.435 | 115 | 56 | 1 | 2 | 116 | 494 | 607 | 2.69e-31 | 117 |
MS.gene43673.t1 | MTR_1g061590 | 44.526 | 137 | 61 | 4 | 2 | 125 | 523 | 657 | 5.30e-30 | 113 |
MS.gene43673.t1 | MTR_7g103440 | 42.754 | 138 | 64 | 5 | 1 | 125 | 535 | 670 | 1.33e-29 | 112 |
MS.gene43673.t1 | MTR_4g074080 | 46.729 | 107 | 55 | 1 | 7 | 113 | 533 | 637 | 1.10e-23 | 95.5 |
MS.gene43673.t1 | MTR_7g059225 | 38.017 | 121 | 72 | 3 | 1 | 120 | 544 | 662 | 3.40e-22 | 91.3 |
MS.gene43673.t1 | MTR_5g094380 | 41.441 | 111 | 57 | 2 | 3 | 113 | 427 | 529 | 8.91e-22 | 89.7 |
MS.gene43673.t1 | MTR_5g083480 | 39.130 | 115 | 65 | 3 | 7 | 121 | 661 | 770 | 1.50e-20 | 86.3 |
MS.gene43673.t1 | MTR_5g083480 | 39.130 | 115 | 65 | 3 | 7 | 121 | 664 | 773 | 1.50e-20 | 86.3 |
MS.gene43673.t1 | MTR_2g023150 | 43.119 | 109 | 54 | 3 | 22 | 130 | 161 | 261 | 1.12e-18 | 79.3 |
MS.gene43673.t1 | MTR_4g014070 | 40.000 | 115 | 64 | 3 | 7 | 121 | 669 | 778 | 1.42e-18 | 80.9 |
MS.gene43673.t1 | MTR_2g008740 | 36.975 | 119 | 72 | 3 | 7 | 124 | 279 | 395 | 1.05e-17 | 78.2 |
MS.gene43673.t1 | MTR_3g078250 | 42.857 | 91 | 46 | 2 | 19 | 109 | 540 | 624 | 1.23e-17 | 78.2 |
MS.gene43673.t1 | MTR_6g069030 | 34.906 | 106 | 65 | 2 | 16 | 118 | 505 | 609 | 4.07e-16 | 73.6 |
MS.gene43673.t1 | MTR_8g101260 | 38.596 | 114 | 66 | 3 | 7 | 118 | 507 | 618 | 2.04e-15 | 71.6 |
MS.gene43673.t1 | MTR_6g093050 | 37.391 | 115 | 67 | 3 | 7 | 118 | 506 | 618 | 7.12e-15 | 70.1 |
MS.gene43673.t1 | MTR_1g009270 | 35.965 | 114 | 69 | 3 | 7 | 118 | 505 | 616 | 1.80e-14 | 68.9 |
MS.gene43673.t1 | MTR_7g059285 | 35.833 | 120 | 72 | 3 | 1 | 120 | 963 | 1077 | 1.84e-14 | 68.9 |
MS.gene43673.t1 | MTR_2g070020 | 36.364 | 110 | 66 | 3 | 7 | 115 | 978 | 1084 | 2.89e-14 | 68.6 |
MS.gene43673.t1 | MTR_5g045910 | 36.290 | 124 | 71 | 4 | 7 | 130 | 960 | 1075 | 3.12e-14 | 68.6 |
MS.gene43673.t1 | MTR_2g105900 | 34.783 | 115 | 69 | 4 | 7 | 118 | 508 | 619 | 2.65e-13 | 65.5 |
MS.gene43673.t1 | MTR_1g080440 | 31.667 | 120 | 78 | 4 | 7 | 126 | 879 | 994 | 3.14e-13 | 65.5 |
MS.gene43673.t1 | MTR_1g109580 | 34.234 | 111 | 71 | 2 | 7 | 117 | 597 | 705 | 3.22e-13 | 65.5 |
MS.gene43673.t1 | MTR_7g098610 | 34.483 | 116 | 73 | 3 | 7 | 122 | 882 | 994 | 4.01e-13 | 65.1 |
MS.gene43673.t1 | MTR_7g018890 | 35.514 | 107 | 66 | 2 | 7 | 111 | 561 | 666 | 5.47e-13 | 64.7 |
MS.gene43673.t1 | MTR_1g069470 | 32.576 | 132 | 75 | 5 | 1 | 122 | 857 | 984 | 7.50e-13 | 64.3 |
MS.gene43673.t1 | MTR_4g105370 | 36.937 | 111 | 67 | 3 | 7 | 116 | 942 | 1050 | 8.25e-13 | 64.3 |
MS.gene43673.t1 | MTR_7g073290 | 39.286 | 112 | 64 | 4 | 7 | 118 | 836 | 943 | 1.14e-12 | 63.9 |
MS.gene43673.t1 | MTR_4g124990 | 29.752 | 121 | 76 | 2 | 5 | 116 | 505 | 625 | 1.49e-12 | 63.5 |
MS.gene43673.t1 | MTR_3g110840 | 35.772 | 123 | 69 | 6 | 7 | 126 | 830 | 945 | 1.82e-12 | 63.2 |
MS.gene43673.t1 | MTR_4g094885 | 37.838 | 111 | 52 | 3 | 4 | 113 | 522 | 616 | 2.52e-12 | 62.8 |
MS.gene43673.t1 | MTR_7g045510 | 33.645 | 107 | 64 | 2 | 7 | 113 | 1081 | 1180 | 2.57e-12 | 62.8 |
MS.gene43673.t1 | MTR_7g039330 | 33.645 | 107 | 64 | 2 | 7 | 113 | 1179 | 1278 | 2.58e-12 | 62.8 |
MS.gene43673.t1 | MTR_8g064690 | 35.514 | 107 | 66 | 2 | 7 | 111 | 477 | 582 | 3.82e-12 | 62.4 |
MS.gene43673.t1 | MTR_3g095100 | 35.455 | 110 | 68 | 3 | 7 | 116 | 1044 | 1150 | 4.73e-12 | 62.0 |
MS.gene43673.t1 | MTR_2g090710 | 34.021 | 97 | 59 | 2 | 21 | 117 | 876 | 967 | 4.86e-12 | 62.0 |
MS.gene43673.t1 | MTR_4g028090 | 37.374 | 99 | 58 | 4 | 20 | 118 | 761 | 855 | 5.45e-12 | 62.0 |
MS.gene43673.t1 | MTR_5g011410 | 31.818 | 110 | 71 | 2 | 7 | 116 | 780 | 885 | 5.46e-12 | 62.0 |
MS.gene43673.t1 | MTR_5g090100 | 33.071 | 127 | 71 | 7 | 7 | 130 | 852 | 967 | 7.87e-12 | 61.6 |
MS.gene43673.t1 | MTR_0194s0030 | 36.449 | 107 | 64 | 3 | 7 | 111 | 497 | 601 | 8.50e-12 | 61.2 |
MS.gene43673.t1 | MTR_7g109670 | 35.870 | 92 | 58 | 1 | 22 | 113 | 565 | 655 | 8.85e-12 | 61.2 |
MS.gene43673.t1 | MTR_7g070200 | 31.624 | 117 | 77 | 1 | 3 | 116 | 605 | 721 | 9.20e-12 | 61.2 |
MS.gene43673.t1 | MTR_4g014130 | 36.620 | 71 | 44 | 1 | 51 | 121 | 1 | 70 | 1.74e-11 | 56.6 |
MS.gene43673.t1 | MTR_2g042710 | 30.000 | 110 | 75 | 2 | 7 | 115 | 519 | 627 | 1.98e-11 | 60.5 |
MS.gene43673.t1 | MTR_2g072520 | 36.607 | 112 | 67 | 3 | 7 | 118 | 192 | 299 | 3.50e-11 | 59.3 |
MS.gene43673.t1 | MTR_8g023720 | 33.981 | 103 | 66 | 2 | 18 | 120 | 987 | 1087 | 3.92e-11 | 59.7 |
MS.gene43673.t1 | MTR_3g060880 | 30.769 | 117 | 78 | 3 | 1 | 116 | 940 | 1054 | 4.99e-11 | 59.3 |
MS.gene43673.t1 | MTR_1g086870 | 35.870 | 92 | 58 | 1 | 22 | 113 | 471 | 561 | 5.58e-11 | 58.9 |
MS.gene43673.t1 | MTR_3g069050 | 35.789 | 95 | 60 | 1 | 20 | 113 | 525 | 619 | 6.52e-11 | 58.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43673.t1 | AT5G58300 | 63.158 | 114 | 40 | 2 | 3 | 116 | 518 | 629 | 1.18e-40 | 143 |
MS.gene43673.t1 | AT5G58300 | 63.158 | 114 | 40 | 2 | 3 | 116 | 518 | 629 | 1.18e-40 | 143 |
MS.gene43673.t1 | AT5G58300 | 63.158 | 114 | 40 | 2 | 3 | 116 | 518 | 629 | 1.18e-40 | 143 |
MS.gene43673.t1 | AT2G26730 | 58.929 | 112 | 44 | 2 | 7 | 118 | 512 | 621 | 1.19e-37 | 134 |
MS.gene43673.t1 | AT3G08680 | 58.261 | 115 | 47 | 1 | 2 | 116 | 501 | 614 | 1.36e-37 | 134 |
MS.gene43673.t1 | AT3G08680 | 58.261 | 115 | 47 | 1 | 2 | 116 | 501 | 614 | 1.36e-37 | 134 |
MS.gene43673.t1 | AT1G68400 | 54.237 | 118 | 50 | 3 | 1 | 116 | 521 | 636 | 1.45e-33 | 123 |
MS.gene43673.t1 | AT5G05160 | 52.991 | 117 | 50 | 3 | 3 | 116 | 502 | 616 | 1.96e-33 | 122 |
MS.gene43673.t1 | AT4G23740 | 53.982 | 113 | 50 | 2 | 1 | 113 | 495 | 605 | 4.93e-33 | 122 |
MS.gene43673.t1 | AT4G23740 | 53.982 | 113 | 50 | 2 | 1 | 113 | 495 | 605 | 4.93e-33 | 122 |
MS.gene43673.t1 | AT5G41680 | 54.783 | 115 | 48 | 4 | 3 | 116 | 216 | 327 | 3.78e-32 | 116 |
MS.gene43673.t1 | AT5G41680 | 54.783 | 115 | 48 | 4 | 3 | 116 | 242 | 353 | 6.16e-32 | 115 |
MS.gene43673.t1 | AT5G53320 | 49.580 | 119 | 50 | 3 | 7 | 125 | 470 | 578 | 1.59e-30 | 114 |
MS.gene43673.t1 | AT1G64210 | 50.877 | 114 | 51 | 2 | 7 | 116 | 469 | 581 | 6.59e-30 | 112 |
MS.gene43673.t1 | AT3G17840 | 48.739 | 119 | 58 | 2 | 2 | 118 | 523 | 640 | 7.48e-30 | 112 |
MS.gene43673.t1 | AT2G36570 | 49.618 | 131 | 49 | 4 | 1 | 116 | 517 | 645 | 1.24e-29 | 112 |
MS.gene43673.t1 | AT5G16590 | 43.590 | 117 | 65 | 1 | 2 | 118 | 500 | 615 | 5.33e-29 | 110 |
MS.gene43673.t1 | AT1G48480 | 46.429 | 112 | 59 | 1 | 2 | 113 | 529 | 639 | 5.33e-29 | 110 |
MS.gene43673.t1 | AT3G02880 | 41.026 | 117 | 68 | 1 | 2 | 118 | 502 | 617 | 2.80e-27 | 105 |
MS.gene43673.t1 | AT3G51740 | 40.000 | 110 | 62 | 2 | 7 | 116 | 703 | 808 | 3.34e-22 | 91.3 |
MS.gene43673.t1 | AT3G24660 | 41.322 | 121 | 67 | 4 | 2 | 120 | 537 | 655 | 1.03e-21 | 89.7 |
MS.gene43673.t1 | AT5G24100 | 38.393 | 112 | 65 | 3 | 7 | 118 | 506 | 613 | 4.07e-20 | 85.1 |
MS.gene43673.t1 | AT1G10850 | 42.056 | 107 | 60 | 1 | 7 | 113 | 523 | 627 | 4.44e-18 | 79.3 |
MS.gene43673.t1 | AT4G31250 | 37.719 | 114 | 67 | 3 | 7 | 118 | 531 | 642 | 1.06e-15 | 72.4 |
MS.gene43673.t1 | AT4G26540 | 36.667 | 120 | 67 | 4 | 1 | 116 | 927 | 1041 | 2.85e-15 | 71.2 |
MS.gene43673.t1 | AT1G66830 | 33.929 | 112 | 69 | 1 | 1 | 112 | 571 | 677 | 1.40e-14 | 69.3 |
MS.gene43673.t1 | AT1G08590 | 35.537 | 121 | 73 | 5 | 7 | 126 | 895 | 1011 | 1.47e-14 | 69.3 |
MS.gene43673.t1 | AT1G25320 | 31.897 | 116 | 73 | 3 | 4 | 116 | 587 | 699 | 2.28e-14 | 68.9 |
MS.gene43673.t1 | AT1G68690 | 36.449 | 107 | 65 | 2 | 7 | 111 | 542 | 647 | 2.69e-14 | 68.6 |
MS.gene43673.t1 | AT1G68690 | 36.449 | 107 | 65 | 2 | 7 | 111 | 542 | 647 | 2.69e-14 | 68.6 |
MS.gene43673.t1 | AT1G68690 | 36.449 | 107 | 65 | 2 | 7 | 111 | 542 | 647 | 2.69e-14 | 68.6 |
MS.gene43673.t1 | AT1G60630 | 37.383 | 107 | 60 | 1 | 7 | 113 | 516 | 615 | 4.77e-14 | 67.8 |
MS.gene43673.t1 | AT5G48940 | 36.207 | 116 | 64 | 3 | 7 | 120 | 963 | 1070 | 5.92e-14 | 67.8 |
MS.gene43673.t1 | AT1G26150 | 33.333 | 117 | 75 | 2 | 7 | 121 | 596 | 711 | 1.46e-13 | 66.6 |
MS.gene43673.t1 | AT1G50610 | 40.426 | 94 | 47 | 4 | 3 | 93 | 538 | 625 | 1.88e-13 | 66.2 |
MS.gene43673.t1 | AT5G61480 | 38.095 | 105 | 58 | 4 | 21 | 122 | 905 | 1005 | 1.94e-13 | 66.2 |
MS.gene43673.t1 | AT5G56040 | 34.426 | 122 | 71 | 4 | 1 | 118 | 926 | 1042 | 2.18e-13 | 65.9 |
MS.gene43673.t1 | AT4G28650 | 32.759 | 116 | 75 | 3 | 7 | 122 | 872 | 984 | 2.30e-13 | 65.9 |
MS.gene43673.t1 | AT3G24240 | 36.134 | 119 | 69 | 4 | 7 | 125 | 962 | 1073 | 2.43e-13 | 65.9 |
MS.gene43673.t1 | AT1G68690 | 36.190 | 105 | 64 | 2 | 7 | 109 | 542 | 645 | 4.02e-13 | 65.1 |
MS.gene43673.t1 | AT5G38560 | 34.579 | 107 | 67 | 2 | 7 | 111 | 507 | 612 | 5.00e-13 | 65.1 |
MS.gene43673.t1 | AT2G24230 | 35.238 | 105 | 64 | 3 | 17 | 120 | 749 | 850 | 1.14e-12 | 63.9 |
MS.gene43673.t1 | AT2G35620 | 35.849 | 106 | 62 | 3 | 7 | 111 | 469 | 569 | 1.38e-12 | 63.5 |
MS.gene43673.t1 | AT2G35620 | 35.849 | 106 | 62 | 3 | 7 | 111 | 469 | 569 | 1.38e-12 | 63.5 |
MS.gene43673.t1 | AT2G35620 | 35.849 | 106 | 62 | 3 | 7 | 111 | 469 | 569 | 1.38e-12 | 63.5 |
MS.gene43673.t1 | AT2G35620 | 35.849 | 106 | 62 | 3 | 7 | 111 | 469 | 569 | 1.38e-12 | 63.5 |
MS.gene43673.t1 | AT5G20690 | 32.432 | 111 | 72 | 3 | 7 | 116 | 549 | 657 | 1.43e-12 | 63.5 |
MS.gene43673.t1 | AT5G07620 | 29.167 | 120 | 82 | 3 | 1 | 118 | 240 | 358 | 1.72e-12 | 63.2 |
MS.gene43673.t1 | AT1G12460 | 30.909 | 110 | 73 | 1 | 7 | 116 | 631 | 737 | 1.81e-12 | 63.2 |
MS.gene43673.t1 | AT1G12460 | 30.909 | 110 | 73 | 1 | 7 | 116 | 770 | 876 | 1.84e-12 | 63.2 |
MS.gene43673.t1 | AT3G24550 | 37.963 | 108 | 62 | 3 | 7 | 111 | 446 | 551 | 2.73e-12 | 62.8 |
MS.gene43673.t1 | AT1G17230 | 38.182 | 110 | 64 | 3 | 7 | 115 | 968 | 1074 | 2.77e-12 | 62.8 |
MS.gene43673.t1 | AT1G17230 | 38.182 | 110 | 64 | 3 | 7 | 115 | 968 | 1074 | 2.95e-12 | 62.8 |
MS.gene43673.t1 | AT5G49660 | 32.203 | 118 | 74 | 4 | 1 | 117 | 825 | 937 | 3.16e-12 | 62.8 |
MS.gene43673.t1 | AT1G72180 | 35.897 | 117 | 53 | 4 | 7 | 113 | 854 | 958 | 3.32e-12 | 62.8 |
MS.gene43673.t1 | AT5G63930 | 32.231 | 121 | 76 | 4 | 7 | 125 | 910 | 1026 | 3.78e-12 | 62.4 |
MS.gene43673.t1 | AT5G63930 | 32.231 | 121 | 76 | 4 | 7 | 125 | 974 | 1090 | 3.80e-12 | 62.4 |
MS.gene43673.t1 | AT5G67200 | 33.858 | 127 | 58 | 6 | 4 | 124 | 558 | 664 | 4.49e-12 | 62.4 |
MS.gene43673.t1 | AT3G24540 | 38.182 | 110 | 59 | 5 | 7 | 111 | 349 | 454 | 4.99e-12 | 62.0 |
MS.gene43673.t1 | AT2G02220 | 37.634 | 93 | 56 | 2 | 18 | 110 | 912 | 1002 | 7.50e-12 | 61.6 |
MS.gene43673.t1 | AT2G07040 | 34.167 | 120 | 70 | 4 | 3 | 120 | 504 | 616 | 9.42e-12 | 61.2 |
MS.gene43673.t1 | AT1G09970 | 32.456 | 114 | 70 | 5 | 7 | 119 | 849 | 956 | 9.91e-12 | 61.2 |
MS.gene43673.t1 | AT1G70460 | 36.449 | 107 | 65 | 2 | 7 | 111 | 519 | 624 | 1.04e-11 | 61.2 |
MS.gene43673.t1 | AT4G20940 | 38.655 | 119 | 59 | 6 | 7 | 116 | 924 | 1037 | 1.19e-11 | 61.2 |
MS.gene43673.t1 | AT3G49670 | 35.000 | 120 | 70 | 4 | 7 | 124 | 859 | 972 | 1.28e-11 | 60.8 |
MS.gene43673.t1 | AT3G28040 | 32.743 | 113 | 73 | 2 | 7 | 119 | 898 | 1007 | 1.61e-11 | 60.8 |
MS.gene43673.t1 | AT1G09970 | 33.621 | 116 | 63 | 6 | 6 | 119 | 854 | 957 | 1.88e-11 | 60.5 |
MS.gene43673.t1 | AT5G62710 | 35.849 | 106 | 62 | 3 | 7 | 111 | 480 | 580 | 2.43e-11 | 60.1 |
MS.gene43673.t1 | AT5G62710 | 35.849 | 106 | 62 | 3 | 7 | 111 | 446 | 546 | 2.46e-11 | 60.1 |
MS.gene43673.t1 | AT2G01210 | 30.556 | 108 | 74 | 1 | 2 | 109 | 598 | 704 | 2.61e-11 | 60.1 |
MS.gene43673.t1 | AT1G31420 | 34.579 | 107 | 62 | 3 | 7 | 111 | 471 | 571 | 2.81e-11 | 60.1 |
MS.gene43673.t1 | AT1G31420 | 34.579 | 107 | 62 | 3 | 7 | 111 | 472 | 572 | 2.81e-11 | 60.1 |
MS.gene43673.t1 | AT1G31420 | 34.579 | 107 | 62 | 3 | 7 | 111 | 472 | 572 | 2.81e-11 | 60.1 |
MS.gene43673.t1 | AT4G02010 | 33.962 | 106 | 63 | 2 | 22 | 121 | 565 | 669 | 3.11e-11 | 59.7 |
MS.gene43673.t1 | AT2G33170 | 33.333 | 111 | 69 | 4 | 7 | 115 | 994 | 1101 | 3.59e-11 | 59.7 |
MS.gene43673.t1 | AT2G33170 | 33.333 | 111 | 69 | 4 | 7 | 115 | 994 | 1101 | 3.59e-11 | 59.7 |
MS.gene43673.t1 | AT1G67510 | 32.787 | 122 | 74 | 1 | 3 | 116 | 598 | 719 | 4.53e-11 | 59.3 |
MS.gene43673.t1 | AT1G78530 | 37.736 | 106 | 63 | 3 | 7 | 111 | 239 | 342 | 4.78e-11 | 58.9 |
MS.gene43673.t1 | AT5G53890 | 38.298 | 94 | 54 | 2 | 18 | 110 | 932 | 1022 | 4.87e-11 | 59.3 |
MS.gene43673.t1 | AT1G10620 | 35.514 | 107 | 66 | 2 | 7 | 111 | 536 | 641 | 9.27e-11 | 58.5 |
MS.gene43673.t1 | AT1G29720 | 32.692 | 104 | 61 | 4 | 20 | 118 | 851 | 950 | 9.85e-11 | 58.5 |
MS.gene43673.t1 | AT5G44700 | 33.981 | 103 | 62 | 3 | 7 | 105 | 1124 | 1224 | 9.89e-11 | 58.5 |
Find 26 sgRNAs with CRISPR-Local
Find 27 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTCTTCTTGAAATTCTTAC+AGG | 0.215774 | 5.1:+52911950 | MS.gene43673:CDS |
TTGATCTTCCAAGGTGGATT+AGG | 0.331694 | 5.1:+52912011 | MS.gene43673:CDS |
AGATCATAAGCAGAATAAAA+TGG | 0.371183 | 5.1:-52911980 | None:intergenic |
CTAACAACTTCGTCCATTGT+TGG | 0.395312 | 5.1:-52912169 | None:intergenic |
AAGAGTGATGTTTACAACTT+TGG | 0.419117 | 5.1:+52911923 | MS.gene43673:CDS |
TGTCAAAGGTGGAAAATAAC+AGG | 0.430650 | 5.1:+52912146 | MS.gene43673:CDS |
TGAGATGCTTCAGATTGTAT+TGG | 0.469033 | 5.1:+52912117 | MS.gene43673:CDS |
TTCTGAAGCGTGGTATTCGT+TGG | 0.476618 | 5.1:-52911870 | None:intergenic |
TCCAAGGTGGATTAGGTCTG+TGG | 0.506271 | 5.1:+52912018 | MS.gene43673:CDS |
AGGAAGAGAAAATGTTGAAG+AGG | 0.507609 | 5.1:+52912087 | MS.gene43673:CDS |
AGAAAATGTTGAAGAGGAGA+TGG | 0.512232 | 5.1:+52912093 | MS.gene43673:CDS |
TTGACATGGTTGATCTTCCA+AGG | 0.529419 | 5.1:+52912002 | MS.gene43673:CDS |
TTCAATGAGGAGATGATGAG+AGG | 0.529625 | 5.1:+52912067 | MS.gene43673:CDS |
GGAAAATAACAGGCCAACAA+TGG | 0.542245 | 5.1:+52912156 | MS.gene43673:CDS |
GGTCTGTGGTTTGTGAGGAA+TGG | 0.546647 | 5.1:+52912032 | MS.gene43673:CDS |
GATTAGGTCTGTGGTTTGTG+AGG | 0.551466 | 5.1:+52912027 | MS.gene43673:CDS |
TTCTGCTTATGATCTTGACA+TGG | 0.561366 | 5.1:+52911988 | MS.gene43673:CDS |
TGTATTGGCTTGTGTGTCAA+AGG | 0.565320 | 5.1:+52912132 | MS.gene43673:CDS |
ACCACAGACCTAATCCACCT+TGG | 0.605237 | 5.1:-52912019 | None:intergenic |
GTATTCGTTGGATCTTGACA+TGG | 0.616350 | 5.1:-52911858 | None:intergenic |
TGTGGTTTGTGAGGAATGGA+CGG | 0.622419 | 5.1:+52912036 | MS.gene43673:CDS |
TTATACATTAGATTCAGACT+TGG | 0.624709 | 5.1:-52912243 | None:intergenic |
ATTGGCTTGTGTGTCAAAGG+TGG | 0.638481 | 5.1:+52912135 | MS.gene43673:CDS |
ATTCAGTGACTTCTGAAGCG+TGG | 0.640127 | 5.1:-52911880 | None:intergenic |
ACATGGTTGATCTTCCAAGG+TGG | 0.663128 | 5.1:+52912005 | MS.gene43673:CDS |
GTAAACATCACTCTTCTGAG+TGG | 0.720243 | 5.1:-52911915 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | AGATCATAAGCAGAATAAAA+TGG | - | chr5.1:52911983-52912002 | None:intergenic | 25.0% |
AAGAGTGATGTTTACAACTT+TGG | + | chr5.1:52911923-52911942 | MS.gene43673:CDS | 30.0% | |
CTTCTTCTTGAAATTCTTAC+AGG | + | chr5.1:52911950-52911969 | MS.gene43673:CDS | 30.0% | |
!!! | CAGTACTCTTTTTTCAACTT+AGG | - | chr5.1:52912217-52912236 | None:intergenic | 30.0% |
AGAAAATGTTGAAGAGGAGA+TGG | + | chr5.1:52912093-52912112 | MS.gene43673:CDS | 35.0% | |
AGGAAGAGAAAATGTTGAAG+AGG | + | chr5.1:52912087-52912106 | MS.gene43673:CDS | 35.0% | |
TGAGATGCTTCAGATTGTAT+TGG | + | chr5.1:52912117-52912136 | MS.gene43673:CDS | 35.0% | |
TGTCAAAGGTGGAAAATAAC+AGG | + | chr5.1:52912146-52912165 | MS.gene43673:CDS | 35.0% | |
TTCTGCTTATGATCTTGACA+TGG | + | chr5.1:52911988-52912007 | MS.gene43673:CDS | 35.0% | |
!!! | ACTCTTTTTTCAACTTAGGC+TGG | - | chr5.1:52912213-52912232 | None:intergenic | 35.0% |
CTAACAACTTCGTCCATTGT+TGG | - | chr5.1:52912172-52912191 | None:intergenic | 40.0% | |
GGAAAATAACAGGCCAACAA+TGG | + | chr5.1:52912156-52912175 | MS.gene43673:CDS | 40.0% | |
GTAAACATCACTCTTCTGAG+TGG | - | chr5.1:52911918-52911937 | None:intergenic | 40.0% | |
TTCAATGAGGAGATGATGAG+AGG | + | chr5.1:52912067-52912086 | MS.gene43673:CDS | 40.0% | |
TTGACATGGTTGATCTTCCA+AGG | + | chr5.1:52912002-52912021 | MS.gene43673:CDS | 40.0% | |
! | TTGATCTTCCAAGGTGGATT+AGG | + | chr5.1:52912011-52912030 | MS.gene43673:CDS | 40.0% |
!! | TGTATTGGCTTGTGTGTCAA+AGG | + | chr5.1:52912132-52912151 | MS.gene43673:CDS | 40.0% |
ACATGGTTGATCTTCCAAGG+TGG | + | chr5.1:52912005-52912024 | MS.gene43673:CDS | 45.0% | |
! | GACGGCTGAAGTTTTCAATG+AGG | + | chr5.1:52912054-52912073 | MS.gene43673:CDS | 45.0% |
! | GATTAGGTCTGTGGTTTGTG+AGG | + | chr5.1:52912027-52912046 | MS.gene43673:CDS | 45.0% |
! | TGTGGTTTGTGAGGAATGGA+CGG | + | chr5.1:52912036-52912055 | MS.gene43673:CDS | 45.0% |
!! | ATTCAGTGACTTCTGAAGCG+TGG | - | chr5.1:52911883-52911902 | None:intergenic | 45.0% |
!! | ATTGGCTTGTGTGTCAAAGG+TGG | + | chr5.1:52912135-52912154 | MS.gene43673:CDS | 45.0% |
!! | TTCTGAAGCGTGGTATTCGT+TGG | - | chr5.1:52911873-52911892 | None:intergenic | 45.0% |
ACCACAGACCTAATCCACCT+TGG | - | chr5.1:52912022-52912041 | None:intergenic | 50.0% | |
! | GGTCTGTGGTTTGTGAGGAA+TGG | + | chr5.1:52912032-52912051 | MS.gene43673:CDS | 50.0% |
!! | TCCAAGGTGGATTAGGTCTG+TGG | + | chr5.1:52912018-52912037 | MS.gene43673:CDS | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 52911860 | 52912252 | 52911860 | ID=MS.gene43673 |
chr5.1 | mRNA | 52911860 | 52912252 | 52911860 | ID=MS.gene43673.t1;Parent=MS.gene43673 |
chr5.1 | exon | 52911860 | 52912252 | 52911860 | ID=MS.gene43673.t1.exon1;Parent=MS.gene43673.t1 |
chr5.1 | CDS | 52911860 | 52912252 | 52911860 | ID=cds.MS.gene43673.t1;Parent=MS.gene43673.t1 |
Gene Sequence |
Protein sequence |