AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene43803

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene43803.t1 MTR_0402s0040 73.829 363 25 3 416 778 200 492 3.83e-166 489
MS.gene43803.t1 MTR_0402s0040 94.500 200 11 0 32 231 1 200 1.71e-132 402
MS.gene43803.t1 MTR_6g017200 88.961 154 16 1 1 153 1 154 2.97e-95 293
MS.gene43803.t1 MTR_2g070590 89.831 118 12 0 43 160 3 120 8.89e-70 225
MS.gene43803.t1 MTR_1g057920 78.448 116 25 0 31 146 8 123 7.65e-58 193
MS.gene43803.t1 MTR_7g113010 64.474 152 39 2 31 181 431 568 1.80e-51 189
MS.gene43803.t1 MTR_5g015480 61.688 154 54 2 33 185 36 185 6.99e-51 179
MS.gene43803.t1 MTR_6g051425 32.323 297 170 8 65 337 25 314 8.41e-42 156
MS.gene43803.t1 MTR_0558s0020 34.413 247 142 5 71 297 50 296 2.80e-41 153
MS.gene43803.t1 MTR_1g086270 56.522 115 38 1 351 465 1 103 8.28e-38 137
MS.gene43803.t1 MTR_8g446020 38.636 176 106 2 124 297 81 256 4.02e-37 140
MS.gene43803.t1 MTR_0291s0060 76.190 84 20 0 24 107 2 85 4.87e-37 134
MS.gene43803.t1 MTR_6g090505 36.019 211 119 4 102 296 20 230 1.17e-34 136
MS.gene43803.t1 MTR_0137s0040 42.581 155 36 1 33 187 12 113 2.17e-32 121
MS.gene43803.t1 MTR_1g070355 31.148 244 153 7 57 291 72 309 8.61e-29 122
MS.gene43803.t1 MTR_1g083640 29.825 228 140 5 61 268 55 282 1.49e-27 113
MS.gene43803.t1 MTR_4g035820 31.034 261 167 8 50 301 68 324 1.48e-25 113
MS.gene43803.t1 MTR_7g074790 36.842 171 87 3 57 226 10 160 5.11e-25 104
MS.gene43803.t1 MTR_5g039760 35.897 195 96 6 61 252 14 182 4.58e-24 100
MS.gene43803.t1 MTR_7g446520 31.837 245 148 5 60 302 91 318 1.44e-23 103
MS.gene43803.t1 MTR_1g050985 77.586 58 12 1 129 185 41 98 1.65e-21 90.5
MS.gene43803.t1 MTR_0337s0040 33.793 145 94 2 120 262 78 222 3.73e-21 93.6
MS.gene43803.t1 MTR_7g446480 37.500 176 106 4 133 305 140 314 1.56e-20 94.0
MS.gene43803.t1 MTR_7g446510 38.415 164 97 4 145 305 167 329 8.33e-20 92.0
MS.gene43803.t1 MTR_1g008290 33.813 139 87 2 113 250 7 141 1.89e-19 85.9
MS.gene43803.t1 MTR_5g076070 25.641 273 180 8 28 285 18 282 1.02e-18 87.8
MS.gene43803.t1 MTR_4g102720 29.940 167 82 2 57 223 7 138 2.21e-17 82.4
MS.gene43803.t1 MTR_4g067290 42.056 107 56 3 57 161 56 158 3.80e-16 79.0
MS.gene43803.t1 MTR_4g067290 42.056 107 56 3 57 161 56 158 4.05e-16 79.0
MS.gene43803.t1 MTR_4g067290 42.056 107 56 3 57 161 76 178 5.51e-16 79.0
MS.gene43803.t1 MTR_4g067290 42.056 107 56 3 57 161 76 178 6.20e-16 79.0
MS.gene43803.t1 MTR_4g067290 42.056 107 56 3 57 161 74 176 6.28e-16 79.0
MS.gene43803.t1 MTR_7g061980 39.823 113 63 4 57 167 10 119 7.41e-16 75.1
MS.gene43803.t1 MTR_4g067290 42.056 107 56 3 57 161 116 218 8.53e-16 79.3
MS.gene43803.t1 MTR_5g045210 42.697 89 51 0 588 676 20 108 9.10e-16 77.0
MS.gene43803.t1 MTR_2g098920 40.187 107 58 3 57 161 80 182 1.69e-15 77.8
MS.gene43803.t1 MTR_1g091013 51.282 78 27 1 48 125 3 69 2.89e-15 71.6
MS.gene43803.t1 MTR_6g022070 28.161 174 120 1 351 524 1 169 5.57e-15 77.4
MS.gene43803.t1 MTR_2g014100 24.242 198 131 4 61 239 48 245 2.66e-14 73.9
MS.gene43803.t1 MTR_3g006370 38.462 104 62 2 57 159 50 152 1.81e-13 70.9
MS.gene43803.t1 MTR_3g450850 25.092 271 178 10 46 296 32 297 1.18e-12 70.5
MS.gene43803.t1 MTR_0019s0290 30.973 113 77 1 124 235 47 159 2.18e-12 66.2
MS.gene43803.t1 MTR_1g019850 30.303 165 104 4 27 189 41 196 3.28e-12 67.4
MS.gene43803.t1 MTR_2g098880 36.190 105 64 2 57 159 73 176 1.45e-11 66.2
MS.gene43803.t1 MTR_1g055240 30.088 113 78 1 124 235 32 144 1.47e-11 63.5
MS.gene43803.t1 MTR_2g098880 36.190 105 64 2 57 159 61 164 1.51e-11 65.9
MS.gene43803.t1 MTR_0337s0060 25.862 174 98 4 447 616 21 167 9.64e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene43803.t1 AT4G38180 34.456 653 409 11 32 670 46 693 5.03e-122 385
MS.gene43803.t1 AT4G15090 29.856 623 424 6 57 673 51 666 3.26e-99 326
MS.gene43803.t1 AT4G15090 29.856 623 424 6 57 673 51 666 3.26e-99 326
MS.gene43803.t1 AT4G15090 29.856 623 424 6 57 673 51 666 3.26e-99 326
MS.gene43803.t1 AT4G15090 29.856 623 424 6 57 673 51 666 3.26e-99 326
MS.gene43803.t1 AT4G15090 29.856 623 424 6 57 673 51 666 3.26e-99 326
MS.gene43803.t1 AT1G76320 30.960 604 389 13 61 656 1 584 6.14e-91 300
MS.gene43803.t1 AT1G76320 30.960 604 389 13 61 656 1 584 1.25e-90 300
MS.gene43803.t1 AT1G76320 30.960 604 389 13 61 656 1 584 1.25e-90 300
MS.gene43803.t1 AT1G76320 30.960 604 389 13 61 656 1 584 1.63e-90 300
MS.gene43803.t1 AT3G22170 29.808 624 378 13 57 656 70 657 2.87e-89 299
MS.gene43803.t1 AT3G22170 29.808 624 378 13 57 656 70 657 2.87e-89 299
MS.gene43803.t1 AT2G27110 30.577 641 391 17 48 669 30 635 2.14e-85 289
MS.gene43803.t1 AT2G27110 30.577 641 391 17 48 669 30 635 2.14e-85 289
MS.gene43803.t1 AT3G06250 28.776 629 389 14 48 668 181 758 2.06e-81 276
MS.gene43803.t1 AT3G06250 28.776 629 389 14 48 668 181 758 2.06e-81 276
MS.gene43803.t1 AT3G06250 28.776 629 389 14 48 668 181 758 2.06e-81 276
MS.gene43803.t1 AT5G18960 28.416 644 395 19 37 668 193 782 6.47e-75 259
MS.gene43803.t1 AT5G18960 28.416 644 395 19 37 668 193 782 6.47e-75 259
MS.gene43803.t1 AT1G10240 29.401 568 386 10 51 608 42 604 9.15e-75 256
MS.gene43803.t1 AT1G10240 29.401 568 386 10 51 608 42 604 9.15e-75 256
MS.gene43803.t1 AT2G27110 33.860 443 278 9 235 669 55 490 1.56e-74 256
MS.gene43803.t1 AT2G32250 26.202 645 419 14 61 698 42 636 7.03e-71 248
MS.gene43803.t1 AT2G32250 26.512 645 417 14 61 698 1 595 1.04e-70 247
MS.gene43803.t1 AT2G32250 26.512 645 417 14 61 698 1 595 1.13e-70 247
MS.gene43803.t1 AT2G32250 26.512 645 417 14 61 698 42 636 1.84e-70 247
MS.gene43803.t1 AT2G32250 26.512 645 417 14 61 698 42 636 1.84e-70 247
MS.gene43803.t1 AT2G32250 26.512 645 417 14 61 698 42 636 1.86e-70 247
MS.gene43803.t1 AT2G32250 26.512 645 417 14 61 698 42 636 1.86e-70 247
MS.gene43803.t1 AT2G32250 26.512 645 417 14 61 698 42 636 1.86e-70 247
MS.gene43803.t1 AT4G19990 27.302 630 388 11 62 666 26 610 2.14e-62 224
MS.gene43803.t1 AT4G19990 27.302 630 388 11 62 666 26 610 2.14e-62 224
MS.gene43803.t1 AT4G19990 27.302 630 388 11 62 666 26 610 2.21e-62 224
MS.gene43803.t1 AT4G19990 27.302 630 388 11 62 666 26 610 2.43e-62 224
MS.gene43803.t1 AT4G19990 27.302 630 388 11 62 666 26 610 2.43e-62 224
MS.gene43803.t1 AT4G19990 27.302 630 388 11 62 666 40 624 3.63e-62 223
MS.gene43803.t1 AT4G38170 30.343 379 253 5 240 612 27 400 1.85e-61 216
MS.gene43803.t1 AT5G28530 26.957 575 382 14 57 606 55 616 1.40e-59 214
MS.gene43803.t1 AT5G28530 26.930 583 368 16 57 606 55 612 4.54e-59 213
MS.gene43803.t1 AT5G28530 26.930 583 368 16 57 606 55 612 4.54e-59 213
MS.gene43803.t1 AT1G52520 27.288 579 368 14 57 609 85 636 9.64e-56 204
MS.gene43803.t1 AT1G80010 25.914 602 402 12 41 611 73 661 2.75e-55 203
MS.gene43803.t1 AT4G19990 27.013 596 365 11 96 666 3 553 1.22e-54 201
MS.gene43803.t1 AT5G28530 24.156 563 350 16 57 606 55 553 2.00e-39 155
MS.gene43803.t1 AT5G28530 24.077 569 339 17 57 606 55 549 6.11e-39 154
MS.gene43803.t1 AT3G59470 35.762 151 85 3 24 164 27 175 4.70e-16 79.3
MS.gene43803.t1 AT3G59470 35.762 151 85 3 24 164 27 175 4.70e-16 79.3
MS.gene43803.t1 AT3G59470 35.762 151 85 3 24 164 39 187 6.44e-16 79.0
MS.gene43803.t1 AT4G12850 36.364 132 78 4 50 181 4 129 1.61e-15 74.7
MS.gene43803.t1 AT4G12850 38.739 111 64 3 50 160 4 110 7.07e-15 72.8
MS.gene43803.t1 AT4G12850 38.739 111 64 3 50 160 4 110 1.45e-14 73.2
MS.gene43803.t1 AT3G07500 40.000 105 62 1 57 161 33 136 3.99e-13 69.7
MS.gene43803.t1 AT2G43280 38.318 107 58 3 57 159 22 124 1.40e-12 68.2

Find 148 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCAAATAACAAATATATTT+TGG 0.083882 5.1:+54693837 MS.gene43803:CDS
CGCTTCAGTATATAGGTTTC+AGG 0.197476 5.1:-54694856 None:intergenic
TTTGAAGTCTGATTTAAATT+TGG 0.211881 5.1:+54694456 MS.gene43803:CDS
TTCAGATTGTGTCAATAAAT+TGG 0.215486 5.1:+54693151 MS.gene43803:intron
ATAAATGATTATGGGTATTT+TGG 0.231818 5.1:+54693875 MS.gene43803:CDS
TTCATCATTTGCAATTGATA+TGG 0.235636 5.1:-54695133 None:intergenic
CACAATCCATGAAATGTTTC+TGG 0.237682 5.1:-54694142 None:intergenic
GCACAAATGATAAATGATTA+TGG 0.241903 5.1:+54693866 MS.gene43803:CDS
CTTTAGTGACTGTTTCCTTT+TGG 0.269240 5.1:-54693726 None:intergenic
CACTTTAAAAGAGCTGTTAA+TGG 0.282185 5.1:+54694493 MS.gene43803:CDS
TTTGGTATTCGTCGAGAATA+TGG 0.287007 5.1:+54693308 MS.gene43803:CDS
ATATATTCATGCAAATCTTT+TGG 0.296908 5.1:-54693635 None:intergenic
CTTGACTTGGTTATGACTCT+TGG 0.305137 5.1:-54695480 None:intergenic
TCTGCTCTAGGCTCCCCTTT+TGG 0.322934 5.1:-54693419 None:intergenic
CATTTCATGGATTGTGCACT+TGG 0.334162 5.1:+54694149 MS.gene43803:CDS
AATGAGTATAGTAAAAGAAT+TGG 0.336174 5.1:+54693284 MS.gene43803:CDS
CACCACATACAAGACAAATA+AGG 0.340827 5.1:+54693916 MS.gene43803:CDS
TGGAACTCCTCAAATATTCT+AGG 0.341058 5.1:-54694622 None:intergenic
CATTGTACCGCTTCATGAAA+TGG 0.342244 5.1:-54694951 None:intergenic
ATGAGTTTCTGAAGCTTTGT+TGG 0.343120 5.1:-54695001 None:intergenic
CGGCCGCTGGGAGTATTTGT+TGG 0.347790 5.1:+54693944 MS.gene43803:CDS
ATTGTCTTGGGAGATGAATC+TGG 0.347852 5.1:+54693605 MS.gene43803:CDS
ACTTGTTGAGCATAATATAT+TGG 0.354013 5.1:+54694303 MS.gene43803:CDS
TTCACCAGATCTCTTTCTCT+TGG 0.356018 5.1:-54695277 None:intergenic
CTGTATTCCACCAGCTTGCT+TGG 0.359827 5.1:-54693660 None:intergenic
GTTATGCCAGAAACATTTCA+TGG 0.360799 5.1:+54694136 MS.gene43803:CDS
GGAAATAAAAGCAGAGTTGA+TGG 0.361988 5.1:+54693329 MS.gene43803:CDS
AACAGGATGTTTGGCGCATA+TGG 0.362351 5.1:+54693448 MS.gene43803:CDS
GATATTCTTCATATTCCTCT+TGG 0.370740 5.1:-54694642 None:intergenic
TGCCAACAATTTACCTCACT+TGG 0.380095 5.1:+54693220 MS.gene43803:CDS
AACAAGAATGGCAGCGGCGC+AGG 0.392471 5.1:-54692658 None:intergenic
TATAGTAAAAGAATTGGATT+TGG 0.393932 5.1:+54693290 MS.gene43803:CDS
TGCGTAAAAGATTTGAAAGA+AGG 0.394307 5.1:+54694673 MS.gene43803:CDS
AAAGAGTTCACAATTCGGTT+TGG 0.397902 5.1:+54694216 MS.gene43803:CDS
AGAAATTAGAACAGGATGTT+TGG 0.398022 5.1:+54693439 MS.gene43803:CDS
CACAAATGATAAATGATTAT+GGG 0.400438 5.1:+54693867 MS.gene43803:CDS
TGTCCATCGCTTCAGTATAT+AGG 0.401552 5.1:-54694863 None:intergenic
TTACACTCCTAGAATATTTG+AGG 0.404149 5.1:+54694615 MS.gene43803:CDS
TCAAATAACCACTTGAAAGA+AGG 0.406075 5.1:-54694028 None:intergenic
GCTGGACTCTTCATAAACTT+TGG 0.408472 5.1:-54695043 None:intergenic
AGGAAACAGTCACTAAAGTA+TGG 0.410122 5.1:+54693731 MS.gene43803:CDS
CCTGTTCTAATTTCTGCTCT+AGG 0.415588 5.1:-54693431 None:intergenic
AGTGTCTTGATCCGTCAAAA+TGG 0.423186 5.1:-54694089 None:intergenic
AATTTAAATCAGACTTCAAA+TGG 0.428063 5.1:-54694453 None:intergenic
ATATAAGACAGAATGCTTTA+CGG 0.434726 5.1:+54694173 MS.gene43803:CDS
CGAATTACCTTGAAACCAAA+AGG 0.436415 5.1:+54693711 MS.gene43803:CDS
GCATACAATTTATCAATTGA+AGG 0.436807 5.1:+54694339 MS.gene43803:CDS
AAATTTAGTACAGTCGTTAC+CGG 0.437312 5.1:+54695299 MS.gene43803:CDS
GTTCTATTATGACTTTCAAA+TGG 0.442664 5.1:+54693805 MS.gene43803:CDS
ACAAGACAAATAAGGGTTAT+CGG 0.444271 5.1:+54693924 MS.gene43803:CDS
ATTGTACCGCTTCATGAAAT+GGG 0.445421 5.1:-54694950 None:intergenic
ACCACATACAAGACAAATAA+GGG 0.447196 5.1:+54693917 MS.gene43803:CDS
TATCAAAAGAGTTCACAATT+CGG 0.453232 5.1:+54694211 MS.gene43803:CDS
GGATGGTCGGAGACGGCGGC+GGG 0.454411 5.1:-54692636 None:intergenic
GACAAAAGACGTCAACCAAA+AGG 0.461065 5.1:+54693404 MS.gene43803:CDS
GGGATGGTCGGAGACGGCGG+CGG 0.462743 5.1:-54692637 None:intergenic
TGAAACATTTCTCAAGGCAA+TGG 0.465247 5.1:+54694048 MS.gene43803:CDS
GAAACATTTCTCAAGGCAAT+GGG 0.465404 5.1:+54694049 MS.gene43803:CDS
TAGTGTTGGTAGCAGGATGA+TGG 0.465525 5.1:-54692608 None:intergenic
CCAACGGAGAGGATAGTTAT+GGG 0.468436 5.1:+54694724 MS.gene43803:CDS
GGTTCGTTAGTGTTGGTAGC+AGG 0.468658 5.1:-54692615 None:intergenic
CAAATAACCACTTGAAAGAA+GGG 0.471210 5.1:-54694027 None:intergenic
CCCATAACTATCCTCTCCGT+TGG 0.473881 5.1:-54694724 None:intergenic
TCCAACGGAGAGGATAGTTA+TGG 0.475548 5.1:+54694723 MS.gene43803:CDS
GGTTGGGAAGTGATCAAGAT+TGG 0.482271 5.1:+54694896 MS.gene43803:CDS
GCTGCCATTCTTGTTGATCA+AGG 0.483741 5.1:+54692666 MS.gene43803:CDS
ACCCTTATTTGTCTTGTATG+TGG 0.486140 5.1:-54693918 None:intergenic
CAAAATAATTGATGATATGT+TGG 0.486221 5.1:+54695065 MS.gene43803:CDS
TTGGTTAACTTAACCATTCG+AGG 0.487402 5.1:-54694982 None:intergenic
AGTGTTGGTAGCAGGATGAT+GGG 0.490017 5.1:-54692607 None:intergenic
AAATAAGGGTTATCGGCCGC+TGG 0.490759 5.1:+54693931 MS.gene43803:CDS
TTCCAAGTGAGGTAAATTGT+TGG 0.492887 5.1:-54693222 None:intergenic
ACAAAAGACGTCAACCAAAA+GGG 0.496414 5.1:+54693405 MS.gene43803:CDS
GATAGTTATGGGAAATGCTA+TGG 0.498511 5.1:+54694735 MS.gene43803:CDS
ACAAGCATCACAAATTGTCT+TGG 0.503759 5.1:+54693592 MS.gene43803:CDS
GACACCGTTGGTATGGCAAA+AGG 0.506522 5.1:+54695168 MS.gene43803:CDS
CGAATCATATGAACATGCTC+AGG 0.508001 5.1:-54693545 None:intergenic
TGCTCCAAGAGAAAGAGATC+TGG 0.508313 5.1:+54695273 MS.gene43803:CDS
CCTAGAGCAGAAATTAGAAC+AGG 0.510209 5.1:+54693431 MS.gene43803:CDS
TGGTTTCAAGGTAATTCGTA+AGG 0.511193 5.1:-54693706 None:intergenic
GGCAGCGGCGCAGGGATGGT+CGG 0.512257 5.1:-54692649 None:intergenic
TGGACAAGAAATGCAAGGTT+GGG 0.513978 5.1:+54694880 MS.gene43803:CDS
ATGGACAAGAAATGCAAGGT+TGG 0.517510 5.1:+54694879 MS.gene43803:CDS
CAAGCATCACAAATTGTCTT+GGG 0.518135 5.1:+54693593 MS.gene43803:CDS
GTTATTTGAAACATTTCTCA+AGG 0.522402 5.1:+54694042 MS.gene43803:CDS
GGAAATGAAGTTTGATTCTG+AGG 0.525153 5.1:+54693241 MS.gene43803:CDS
GTTGAGCATAATATATTGGA+AGG 0.525933 5.1:+54694307 MS.gene43803:CDS
ATCGAGAAAGTTCACGCAAG+CGG 0.527366 5.1:+54695199 MS.gene43803:CDS
GGCGCAGGGATGGTCGGAGA+CGG 0.533543 5.1:-54692643 None:intergenic
AATGGGCATGGACATATGTC+CGG 0.534093 5.1:+54694365 MS.gene43803:CDS
AAACAATCCCTTCTTTCAAG+TGG 0.538998 5.1:+54694020 MS.gene43803:CDS
GAATGGCAGCGGCGCAGGGA+TGG 0.540116 5.1:-54692653 None:intergenic
GAAGTTTGATTCTGAGGCAG+CGG 0.545649 5.1:+54693247 MS.gene43803:CDS
GCCTAGATTGAAAATGAAGA+AGG 0.546195 5.1:+54694564 MS.gene43803:CDS
TCAAGACACTGCGATGGCTA+AGG 0.547319 5.1:+54694102 MS.gene43803:CDS
GCGACACAATCAAGTCAAGT+TGG 0.547894 5.1:+54695430 MS.gene43803:CDS
CAATGTGGACACCGTTGGTA+TGG 0.550134 5.1:+54695161 MS.gene43803:CDS
GTCACTAAAGTATGGTGAGG+TGG 0.552933 5.1:+54693739 MS.gene43803:CDS
GAAGTGATCAAGATTGGAAA+GGG 0.552959 5.1:+54694902 MS.gene43803:CDS
GTCCGGAAAACATTCACTGC+AGG 0.554763 5.1:+54694382 MS.gene43803:CDS
ATTACCTTGATCAACAAGAA+TGG 0.557192 5.1:-54692670 None:intergenic
GCAGGGATGGTCGGAGACGG+CGG 0.559162 5.1:-54692640 None:intergenic
TCACTAAAGTATGGTGAGGT+GGG 0.560370 5.1:+54693740 MS.gene43803:CDS
TTGTTGGACTAAATAATCAC+AGG 0.567844 5.1:+54693960 MS.gene43803:CDS
AATAAGGGTTATCGGCCGCT+GGG 0.572692 5.1:+54693932 MS.gene43803:CDS
TCAAACTTCATTTCCAAGTG+AGG 0.576931 5.1:-54693233 None:intergenic
GGCGGCGGGTTCGTTAGTGT+TGG 0.578521 5.1:-54692622 None:intergenic
ACAAGAATGGCAGCGGCGCA+GGG 0.579952 5.1:-54692657 None:intergenic
ATATGGTTATTTCACTCGAT+CGG 0.580255 5.1:+54693465 MS.gene43803:CDS
CAAAATGTGCAACACGGACA+AGG 0.581561 5.1:+54693191 MS.gene43803:CDS
GTGTTGGTAGCAGGATGATG+GGG 0.582430 5.1:-54692606 None:intergenic
GGAAGTGATCAAGATTGGAA+AGG 0.584639 5.1:+54694901 MS.gene43803:CDS
GGATGGAGAATCAGAGGGCA+TGG 0.588066 5.1:+54695101 MS.gene43803:CDS
TATATATCCAAGCAAGCTGG+TGG 0.588298 5.1:+54693653 MS.gene43803:CDS
ATAATATATTGGAAGGGTCG+TGG 0.588775 5.1:+54694314 MS.gene43803:CDS
CAATGAGTTATGTCCTCGAA+TGG 0.589590 5.1:+54694969 MS.gene43803:CDS
GAATATATATCCAAGCAAGC+TGG 0.590655 5.1:+54693650 MS.gene43803:CDS
AAACCTATATACTGAAGCGA+TGG 0.592444 5.1:+54694860 MS.gene43803:CDS
GCTGGTGGAATACAGACAGT+TGG 0.597501 5.1:+54693668 MS.gene43803:CDS
CATGCTCAGGTTGAAGTTGG+TGG 0.600927 5.1:-54693532 None:intergenic
GTATGTGGATGGAGAATCAG+AGG 0.603406 5.1:+54695095 MS.gene43803:CDS
CAAAAGACGTCAACCAAAAG+GGG 0.607006 5.1:+54693406 MS.gene43803:CDS
GAACATGCTCAGGTTGAAGT+TGG 0.607804 5.1:-54693535 None:intergenic
TTGATCAACAAGAATGGCAG+CGG 0.608431 5.1:-54692664 None:intergenic
TAAAAGCCCATTTCATGAAG+CGG 0.608976 5.1:+54694944 MS.gene43803:CDS
TGTCGTAAATTTGAGACACA+TGG 0.610330 5.1:+54694778 MS.gene43803:CDS
CAATCAAGTCAAGTTGGCAA+TGG 0.617634 5.1:+54695436 MS.gene43803:CDS
AAGATTCACATGCTACAAAG+AGG 0.619398 5.1:+54693367 MS.gene43803:CDS
TTGAGCATAATATATTGGAA+GGG 0.622690 5.1:+54694308 MS.gene43803:CDS
GATAGATGTACATGAAGATG+AGG 0.623151 5.1:+54694252 MS.gene43803:CDS
GTGATCAAGATTGGAAAGGG+AGG 0.630069 5.1:+54694905 MS.gene43803:CDS
GACGGATCAAGACACTGCGA+TGG 0.636401 5.1:+54694096 MS.gene43803:CDS
TGCTACAAAGAGGGTGTACG+AGG 0.638548 5.1:+54693377 MS.gene43803:CDS
ACATTTCTCAAGGCAATGGG+TGG 0.644607 5.1:+54694052 MS.gene43803:CDS
AGCGATGGACAAGAAATGCA+AGG 0.651903 5.1:+54694875 MS.gene43803:CDS
TGAAAGTCATAATAGAACGA+GGG 0.653626 5.1:-54693800 None:intergenic
AGATTCACATGCTACAAAGA+GGG 0.654496 5.1:+54693368 MS.gene43803:CDS
CACAAACTATGATAATCCAA+CGG 0.657053 5.1:+54694708 MS.gene43803:CDS
CATGAACAAAATGTGCAACA+CGG 0.658217 5.1:+54693185 MS.gene43803:CDS
ATTGACAATGTGGACACCGT+TGG 0.671830 5.1:+54695156 MS.gene43803:CDS
ACAGTCACTAAAGTATGGTG+AGG 0.682809 5.1:+54693736 MS.gene43803:CDS
ATAGATGTACATGAAGATGA+GGG 0.683860 5.1:+54694253 MS.gene43803:CDS
AATATTTGAGGAGTTCCAAG+AGG 0.693235 5.1:+54694627 MS.gene43803:CDS
TTGAAAGTCATAATAGAACG+AGG 0.700448 5.1:-54693801 None:intergenic
AAATGATGAAATTGACAATG+TGG 0.705740 5.1:+54695146 MS.gene43803:CDS
TATGTGGATGGAGAATCAGA+GGG 0.721169 5.1:+54695096 MS.gene43803:CDS
ACTATGATAATCCAACGGAG+AGG 0.733483 5.1:+54694713 MS.gene43803:CDS
AGTCCAACAAATACTCCCAG+CGG 0.740002 5.1:-54693947 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTACTATTAAAAAAACATT+GGG - chr5.1:54692895-54692914 None:intergenic 10.0%
!! GAAAAGATAAATAAATAATA+TGG - chr5.1:54695379-54695398 None:intergenic 10.0%
!! TATTACTATTAAAAAAACAT+TGG - chr5.1:54692896-54692915 None:intergenic 10.0%
!!! TATATATATATATAGCTTTA+TGG + chr5.1:54692830-54692849 MS.gene43803:intron 10.0%
!! AAAACCAAAATTTACAATTA+AGG - chr5.1:54693131-54693150 None:intergenic 15.0%
!! TTACTATTAAAAAAACATTG+GGG - chr5.1:54692894-54692913 None:intergenic 15.0%
!!! AGCAAATAACAAATATATTT+TGG + chr5.1:54693837-54693856 MS.gene43803:CDS 15.0%
!!! GCAAATAACAAATATATTTT+GGG + chr5.1:54693838-54693857 MS.gene43803:CDS 15.0%
!! AATGAGTATAGTAAAAGAAT+TGG + chr5.1:54693284-54693303 MS.gene43803:CDS 20.0%
!! AATTTAAATCAGACTTCAAA+TGG - chr5.1:54694456-54694475 None:intergenic 20.0%
!! CACAAATGATAAATGATTAT+GGG + chr5.1:54693867-54693886 MS.gene43803:CDS 20.0%
!! TAAATAATATGGTTTCTTAC+CGG - chr5.1:54695368-54695387 None:intergenic 20.0%
!! TACTATTAAAAAAACATTGG+GGG - chr5.1:54692893-54692912 None:intergenic 20.0%
!! TATAGTAAAAGAATTGGATT+TGG + chr5.1:54693290-54693309 MS.gene43803:CDS 20.0%
!! TTATCAATTGAAGGAAAAAT+GGG + chr5.1:54694348-54694367 MS.gene43803:CDS 20.0%
!! TTTATCAATTGAAGGAAAAA+TGG + chr5.1:54694347-54694366 MS.gene43803:CDS 20.0%
!!! AATAACAAATATATTTTGGG+CGG + chr5.1:54693841-54693860 MS.gene43803:CDS 20.0%
!!! AATAGTAATAGATAGCTTTA+TGG + chr5.1:54692906-54692925 MS.gene43803:intron 20.0%
!!! ATAAATGATTATGGGTATTT+TGG + chr5.1:54693875-54693894 MS.gene43803:CDS 20.0%
!!! ATATATTCATGCAAATCTTT+TGG - chr5.1:54693638-54693657 None:intergenic 20.0%
!!! CAAAATAATTGATGATATGT+TGG + chr5.1:54695065-54695084 MS.gene43803:CDS 20.0%
!!! TTGATGAAAAATTAGTTTCT+AGG + chr5.1:54692755-54692774 MS.gene43803:intron 20.0%
!!! TTTGAAGTCTGATTTAAATT+TGG + chr5.1:54694456-54694475 MS.gene43803:CDS 20.0%
! AAATGATGAAATTGACAATG+TGG + chr5.1:54695146-54695165 MS.gene43803:CDS 25.0%
! AACATCATGTAATAAAGAGA+CGG - chr5.1:54692725-54692744 None:intergenic 25.0%
! ATATAAGACAGAATGCTTTA+CGG + chr5.1:54694173-54694192 MS.gene43803:CDS 25.0%
! CATAGATAAAAACTACTTAC+CGG - chr5.1:54695321-54695340 None:intergenic 25.0%
! GCACAAATGATAAATGATTA+TGG + chr5.1:54693866-54693885 MS.gene43803:CDS 25.0%
! GCATACAATTTATCAATTGA+AGG + chr5.1:54694339-54694358 MS.gene43803:CDS 25.0%
! GGCAAATAATAAAATAGAGA+AGG - chr5.1:54692704-54692723 None:intergenic 25.0%
! GTTCTATTATGACTTTCAAA+TGG + chr5.1:54693805-54693824 MS.gene43803:CDS 25.0%
! TATCAAAAGAGTTCACAATT+CGG + chr5.1:54694211-54694230 MS.gene43803:CDS 25.0%
! TTCAGATTGTGTCAATAAAT+TGG + chr5.1:54693151-54693170 MS.gene43803:intron 25.0%
! TTCATCATTTGCAATTGATA+TGG - chr5.1:54695136-54695155 None:intergenic 25.0%
! TTGAGCATAATATATTGGAA+GGG + chr5.1:54694308-54694327 MS.gene43803:CDS 25.0%
!! ACTTGTTGAGCATAATATAT+TGG + chr5.1:54694303-54694322 MS.gene43803:CDS 25.0%
!! GTTATTTGAAACATTTCTCA+AGG + chr5.1:54694042-54694061 MS.gene43803:CDS 25.0%
!!! CATATCATCAATTATTTTGC+TGG - chr5.1:54695064-54695083 None:intergenic 25.0%
AAATTTAGTACAGTCGTTAC+CGG + chr5.1:54695299-54695318 MS.gene43803:CDS 30.0%
ACAAGACAAATAAGGGTTAT+CGG + chr5.1:54693924-54693943 MS.gene43803:CDS 30.0%
ACCACATACAAGACAAATAA+GGG + chr5.1:54693917-54693936 MS.gene43803:CDS 30.0%
AGAAATTAGAACAGGATGTT+TGG + chr5.1:54693439-54693458 MS.gene43803:CDS 30.0%
ATAGATGTACATGAAGATGA+GGG + chr5.1:54694253-54694272 MS.gene43803:CDS 30.0%
ATTACCTTGATCAACAAGAA+TGG - chr5.1:54692673-54692692 None:intergenic 30.0%
CAAATAACCACTTGAAAGAA+GGG - chr5.1:54694030-54694049 None:intergenic 30.0%
CACAAACTATGATAATCCAA+CGG + chr5.1:54694708-54694727 MS.gene43803:CDS 30.0%
GATATTCTTCATATTCCTCT+TGG - chr5.1:54694645-54694664 None:intergenic 30.0%
GGAAAAAGCGATATAAATCT+TGG + chr5.1:54695220-54695239 MS.gene43803:CDS 30.0%
GTTGAGCATAATATATTGGA+AGG + chr5.1:54694307-54694326 MS.gene43803:CDS 30.0%
TCAAATAACCACTTGAAAGA+AGG - chr5.1:54694031-54694050 None:intergenic 30.0%
TGAAAGTCATAATAGAACGA+GGG - chr5.1:54693803-54693822 None:intergenic 30.0%
TGCGTAAAAGATTTGAAAGA+AGG + chr5.1:54694673-54694692 MS.gene43803:CDS 30.0%
TTAAAAAAACATTGGGGGAA+AGG - chr5.1:54692888-54692907 None:intergenic 30.0%
TTACACTCCTAGAATATTTG+AGG + chr5.1:54694615-54694634 MS.gene43803:CDS 30.0%
TTGAAAGTCATAATAGAACG+AGG - chr5.1:54693804-54693823 None:intergenic 30.0%
TTGTTGGACTAAATAATCAC+AGG + chr5.1:54693960-54693979 MS.gene43803:CDS 30.0%
! AAAGCCAAAAACCATTTTGA+CGG + chr5.1:54694078-54694097 MS.gene43803:CDS 30.0%
! ATATGGTTATTTCACTCGAT+CGG + chr5.1:54693465-54693484 MS.gene43803:CDS 30.0%
! CACTTTAAAAGAGCTGTTAA+TGG + chr5.1:54694493-54694512 MS.gene43803:CDS 30.0%
! GTGAACTCTTTTGATATAAG+TGG - chr5.1:54694207-54694226 None:intergenic 30.0%
!! AATTTTAGTACAGTCGTTAC+CGG + chr5.1:54695346-54695365 MS.gene43803:intron 30.0%
!! GTGGCCTTAATTGTAAATTT+TGG + chr5.1:54693124-54693143 MS.gene43803:intron 30.0%
AAACAATCCCTTCTTTCAAG+TGG + chr5.1:54694020-54694039 MS.gene43803:CDS 35.0%
AAACCTATATACTGAAGCGA+TGG + chr5.1:54694860-54694879 MS.gene43803:CDS 35.0%
AAAGAGTTCACAATTCGGTT+TGG + chr5.1:54694216-54694235 MS.gene43803:CDS 35.0%
AAGATTCACATGCTACAAAG+AGG + chr5.1:54693367-54693386 MS.gene43803:CDS 35.0%
AATATTTGAGGAGTTCCAAG+AGG + chr5.1:54694627-54694646 MS.gene43803:CDS 35.0%
AATTGAAGGAAAAATGGGCA+TGG + chr5.1:54694353-54694372 MS.gene43803:CDS 35.0%
ACAAAAGACGTCAACCAAAA+GGG + chr5.1:54693405-54693424 MS.gene43803:CDS 35.0%
ACAAGCATCACAAATTGTCT+TGG + chr5.1:54693592-54693611 MS.gene43803:CDS 35.0%
AGATTCACATGCTACAAAGA+GGG + chr5.1:54693368-54693387 MS.gene43803:CDS 35.0%
AGGAAACAGTCACTAAAGTA+TGG + chr5.1:54693731-54693750 MS.gene43803:CDS 35.0%
ATAATATATTGGAAGGGTCG+TGG + chr5.1:54694314-54694333 MS.gene43803:CDS 35.0%
ATTGTACCGCTTCATGAAAT+GGG - chr5.1:54694953-54694972 None:intergenic 35.0%
CAAGCATCACAAATTGTCTT+GGG + chr5.1:54693593-54693612 MS.gene43803:CDS 35.0%
CACAATCCATGAAATGTTTC+TGG - chr5.1:54694145-54694164 None:intergenic 35.0%
CACCACATACAAGACAAATA+AGG + chr5.1:54693916-54693935 MS.gene43803:CDS 35.0%
CATGAACAAAATGTGCAACA+CGG + chr5.1:54693185-54693204 MS.gene43803:CDS 35.0%
CGAATTACCTTGAAACCAAA+AGG + chr5.1:54693711-54693730 MS.gene43803:CDS 35.0%
GAAACATTTCTCAAGGCAAT+GGG + chr5.1:54694049-54694068 MS.gene43803:CDS 35.0%
GAAGTGATCAAGATTGGAAA+GGG + chr5.1:54694902-54694921 MS.gene43803:CDS 35.0%
GAATATATATCCAAGCAAGC+TGG + chr5.1:54693650-54693669 MS.gene43803:CDS 35.0%
GATAGATGTACATGAAGATG+AGG + chr5.1:54694252-54694271 MS.gene43803:CDS 35.0%
GATAGTTATGGGAAATGCTA+TGG + chr5.1:54694735-54694754 MS.gene43803:CDS 35.0%
GCCTAGATTGAAAATGAAGA+AGG + chr5.1:54694564-54694583 MS.gene43803:CDS 35.0%
GGAAATAAAAGCAGAGTTGA+TGG + chr5.1:54693329-54693348 MS.gene43803:CDS 35.0%
GGAAATGAAGTTTGATTCTG+AGG + chr5.1:54693241-54693260 MS.gene43803:CDS 35.0%
GTTATGCCAGAAACATTTCA+TGG + chr5.1:54694136-54694155 MS.gene43803:CDS 35.0%
TAAAAGCCCATTTCATGAAG+CGG + chr5.1:54694944-54694963 MS.gene43803:CDS 35.0%
TCAAACTTCATTTCCAAGTG+AGG - chr5.1:54693236-54693255 None:intergenic 35.0%
TGAAACATTTCTCAAGGCAA+TGG + chr5.1:54694048-54694067 MS.gene43803:CDS 35.0%
TGGAACTCCTCAAATATTCT+AGG - chr5.1:54694625-54694644 None:intergenic 35.0%
TGGTTTCAAGGTAATTCGTA+AGG - chr5.1:54693709-54693728 None:intergenic 35.0%
TTCCAAGTGAGGTAAATTGT+TGG - chr5.1:54693225-54693244 None:intergenic 35.0%
TTGGTTAACTTAACCATTCG+AGG - chr5.1:54694985-54695004 None:intergenic 35.0%
TTTGGTATTCGTCGAGAATA+TGG + chr5.1:54693308-54693327 MS.gene43803:CDS 35.0%
! ACCCTTATTTGTCTTGTATG+TGG - chr5.1:54693921-54693940 None:intergenic 35.0%
! AGGGTGAATTTTTGAATGCT+TGG + chr5.1:54694272-54694291 MS.gene43803:CDS 35.0%
! ATGCAGTCTAAGTTTTCTAG+TGG + chr5.1:54692942-54692961 MS.gene43803:intron 35.0%
! ATGTCTGAAATCGTCACTTA+TGG + chr5.1:54693102-54693121 MS.gene43803:intron 35.0%
! CTTTAGTGACTGTTTCCTTT+TGG - chr5.1:54693729-54693748 None:intergenic 35.0%
! GCCTTCTTCATTTTCAATCT+AGG - chr5.1:54694568-54694587 None:intergenic 35.0%
! TATGTTGGCCAAAAAGTATG+TGG + chr5.1:54695080-54695099 MS.gene43803:CDS 35.0%
! TGATCCGTCAAAATGGTTTT+TGG - chr5.1:54694085-54694104 None:intergenic 35.0%
! TGTCGTAAATTTGAGACACA+TGG + chr5.1:54694778-54694797 MS.gene43803:CDS 35.0%
! TTCTCCATCCACATACTTTT+TGG - chr5.1:54695091-54695110 None:intergenic 35.0%
!! AAAACAACATTCTGAAGTCG+CGG - chr5.1:54693050-54693069 None:intergenic 35.0%
!! ATGAGTTTCTGAAGCTTTGT+TGG - chr5.1:54695004-54695023 None:intergenic 35.0%
!!! ACTGTTTCCTTTTGGTTTCA+AGG - chr5.1:54693721-54693740 None:intergenic 35.0%
AAAAACATTGGGGGAAAGGA+TGG - chr5.1:54692884-54692903 None:intergenic 40.0%
ACAGTCACTAAAGTATGGTG+AGG + chr5.1:54693736-54693755 MS.gene43803:CDS 40.0%
ACTATGATAATCCAACGGAG+AGG + chr5.1:54694713-54694732 MS.gene43803:CDS 40.0%
AGTGTCTTGATCCGTCAAAA+TGG - chr5.1:54694092-54694111 None:intergenic 40.0%
ATGGACAAGAAATGCAAGGT+TGG + chr5.1:54694879-54694898 MS.gene43803:CDS 40.0%
ATTGTCTTGGGAGATGAATC+TGG + chr5.1:54693605-54693624 MS.gene43803:CDS 40.0%
CAAAAGACGTCAACCAAAAG+GGG + chr5.1:54693406-54693425 MS.gene43803:CDS 40.0%
CAATGAGTTATGTCCTCGAA+TGG + chr5.1:54694969-54694988 MS.gene43803:CDS 40.0%
CATTGTACCGCTTCATGAAA+TGG - chr5.1:54694954-54694973 None:intergenic 40.0%
CCTAGAGCAGAAATTAGAAC+AGG + chr5.1:54693431-54693450 MS.gene43803:CDS 40.0%
CCTGTTCTAATTTCTGCTCT+AGG - chr5.1:54693434-54693453 None:intergenic 40.0%
CGAATCATATGAACATGCTC+AGG - chr5.1:54693548-54693567 None:intergenic 40.0%
CGCTTCAGTATATAGGTTTC+AGG - chr5.1:54694859-54694878 None:intergenic 40.0%
GACAAAAGACGTCAACCAAA+AGG + chr5.1:54693404-54693423 MS.gene43803:CDS 40.0%
GCTGGACTCTTCATAAACTT+TGG - chr5.1:54695046-54695065 None:intergenic 40.0%
GGAAGTGATCAAGATTGGAA+AGG + chr5.1:54694901-54694920 MS.gene43803:CDS 40.0%
TATATATCCAAGCAAGCTGG+TGG + chr5.1:54693653-54693672 MS.gene43803:CDS 40.0%
TATGTGGATGGAGAATCAGA+GGG + chr5.1:54695096-54695115 MS.gene43803:CDS 40.0%
TCACTAAAGTATGGTGAGGT+GGG + chr5.1:54693740-54693759 MS.gene43803:CDS 40.0%
TGCCAACAATTTACCTCACT+TGG + chr5.1:54693220-54693239 MS.gene43803:CDS 40.0%
TGGACAAGAAATGCAAGGTT+GGG + chr5.1:54694880-54694899 MS.gene43803:CDS 40.0%
TGTCCATCGCTTCAGTATAT+AGG - chr5.1:54694866-54694885 None:intergenic 40.0%
TTCACCAGATCTCTTTCTCT+TGG - chr5.1:54695280-54695299 None:intergenic 40.0%
TTGATCAACAAGAATGGCAG+CGG - chr5.1:54692667-54692686 None:intergenic 40.0%
! CATTTCATGGATTGTGCACT+TGG + chr5.1:54694149-54694168 MS.gene43803:CDS 40.0%
! TACCTGCAGTGAATGTTTTC+CGG - chr5.1:54694387-54694406 None:intergenic 40.0%
! TATGCCTTTTGCCATACCAA+CGG - chr5.1:54695175-54695194 None:intergenic 40.0%
! TCTGAAATCGTCACTTATGG+TGG + chr5.1:54693105-54693124 MS.gene43803:intron 40.0%
! TTGGCCAAAAAGTATGTGGA+TGG + chr5.1:54695084-54695103 MS.gene43803:CDS 40.0%
!! CAATCAAGTCAAGTTGGCAA+TGG + chr5.1:54695436-54695455 MS.gene43803:CDS 40.0%
!! CACAGGCAAACAGTCATTTT+TGG + chr5.1:54693977-54693996 MS.gene43803:CDS 40.0%
AACAGGATGTTTGGCGCATA+TGG + chr5.1:54693448-54693467 MS.gene43803:CDS 45.0%
AATGGGCATGGACATATGTC+CGG + chr5.1:54694365-54694384 MS.gene43803:CDS 45.0%
ACATTTCTCAAGGCAATGGG+TGG + chr5.1:54694052-54694071 MS.gene43803:CDS 45.0%
AGCGATGGACAAGAAATGCA+AGG + chr5.1:54694875-54694894 MS.gene43803:CDS 45.0%
AGTCCAACAAATACTCCCAG+CGG - chr5.1:54693950-54693969 None:intergenic 45.0%
ATCGAGAAAGTTCACGCAAG+CGG + chr5.1:54695199-54695218 MS.gene43803:CDS 45.0%
ATTGACAATGTGGACACCGT+TGG + chr5.1:54695156-54695175 MS.gene43803:CDS 45.0%
CAAAATGTGCAACACGGACA+AGG + chr5.1:54693191-54693210 MS.gene43803:CDS 45.0%
CCAACGGAGAGGATAGTTAT+GGG + chr5.1:54694724-54694743 MS.gene43803:CDS 45.0%
GCGACACAATCAAGTCAAGT+TGG + chr5.1:54695430-54695449 MS.gene43803:CDS 45.0%
GCTGCCATTCTTGTTGATCA+AGG + chr5.1:54692666-54692685 MS.gene43803:CDS 45.0%
GGTTGGGAAGTGATCAAGAT+TGG + chr5.1:54694896-54694915 MS.gene43803:CDS 45.0%
GTATGTGGATGGAGAATCAG+AGG + chr5.1:54695095-54695114 MS.gene43803:CDS 45.0%
GTCACTAAAGTATGGTGAGG+TGG + chr5.1:54693739-54693758 MS.gene43803:CDS 45.0%
GTGATCAAGATTGGAAAGGG+AGG + chr5.1:54694905-54694924 MS.gene43803:CDS 45.0%
TCCAACGGAGAGGATAGTTA+TGG + chr5.1:54694723-54694742 MS.gene43803:CDS 45.0%
TGCTCCAAGAGAAAGAGATC+TGG + chr5.1:54695273-54695292 MS.gene43803:CDS 45.0%
!! AGTGTTGGTAGCAGGATGAT+GGG - chr5.1:54692610-54692629 None:intergenic 45.0%
!! GAACATGCTCAGGTTGAAGT+TGG - chr5.1:54693538-54693557 None:intergenic 45.0%
!! GAAGTTTGATTCTGAGGCAG+CGG + chr5.1:54693247-54693266 MS.gene43803:CDS 45.0%
!! TAGTGTTGGTAGCAGGATGA+TGG - chr5.1:54692611-54692630 None:intergenic 45.0%
AAATAAGGGTTATCGGCCGC+TGG + chr5.1:54693931-54693950 MS.gene43803:CDS 50.0%
AATAAGGGTTATCGGCCGCT+GGG + chr5.1:54693932-54693951 MS.gene43803:CDS 50.0%
CAATGTGGACACCGTTGGTA+TGG + chr5.1:54695161-54695180 MS.gene43803:CDS 50.0%
CCCATAACTATCCTCTCCGT+TGG - chr5.1:54694727-54694746 None:intergenic 50.0%
GACACCGTTGGTATGGCAAA+AGG + chr5.1:54695168-54695187 MS.gene43803:CDS 50.0%
GCTGGTGGAATACAGACAGT+TGG + chr5.1:54693668-54693687 MS.gene43803:CDS 50.0%
GTCCGGAAAACATTCACTGC+AGG + chr5.1:54694382-54694401 MS.gene43803:CDS 50.0%
TCAAGACACTGCGATGGCTA+AGG + chr5.1:54694102-54694121 MS.gene43803:CDS 50.0%
! CTGTATTCCACCAGCTTGCT+TGG - chr5.1:54693663-54693682 None:intergenic 50.0%
! TGCTACAAAGAGGGTGTACG+AGG + chr5.1:54693377-54693396 MS.gene43803:CDS 50.0%
!! CATGCTCAGGTTGAAGTTGG+TGG - chr5.1:54693535-54693554 None:intergenic 50.0%
!! GGTTCGTTAGTGTTGGTAGC+AGG - chr5.1:54692618-54692637 None:intergenic 50.0%
!! GTGTTGGTAGCAGGATGATG+GGG - chr5.1:54692609-54692628 None:intergenic 50.0%
GACGGATCAAGACACTGCGA+TGG + chr5.1:54694096-54694115 MS.gene43803:CDS 55.0%
GGATGGAGAATCAGAGGGCA+TGG + chr5.1:54695101-54695120 MS.gene43803:CDS 55.0%
!! TCTGCTCTAGGCTCCCCTTT+TGG - chr5.1:54693422-54693441 None:intergenic 55.0%
AACAAGAATGGCAGCGGCGC+AGG - chr5.1:54692661-54692680 None:intergenic 60.0%
ACAAGAATGGCAGCGGCGCA+GGG - chr5.1:54692660-54692679 None:intergenic 60.0%
!! CGGCCGCTGGGAGTATTTGT+TGG + chr5.1:54693944-54693963 MS.gene43803:CDS 60.0%
! GGCGGCGGGTTCGTTAGTGT+TGG - chr5.1:54692625-54692644 None:intergenic 65.0%
GAATGGCAGCGGCGCAGGGA+TGG - chr5.1:54692656-54692675 None:intergenic 70.0%
GCAGGGATGGTCGGAGACGG+CGG - chr5.1:54692643-54692662 None:intergenic 70.0%
GGCGCAGGGATGGTCGGAGA+CGG - chr5.1:54692646-54692665 None:intergenic 70.0%
GGATGGTCGGAGACGGCGGC+GGG - chr5.1:54692639-54692658 None:intergenic 75.0%
GGCAGCGGCGCAGGGATGGT+CGG - chr5.1:54692652-54692671 None:intergenic 75.0%
GGGATGGTCGGAGACGGCGG+CGG - chr5.1:54692640-54692659 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 54692597 54695492 54692597 ID=MS.gene43803
chr5.1 mRNA 54692597 54695492 54692597 ID=MS.gene43803.t1;Parent=MS.gene43803
chr5.1 exon 54692597 54692687 54692597 ID=MS.gene43803.t1.exon1;Parent=MS.gene43803.t1
chr5.1 CDS 54692597 54692687 54692597 ID=cds.MS.gene43803.t1;Parent=MS.gene43803.t1
chr5.1 exon 54693156 54695320 54693156 ID=MS.gene43803.t1.exon2;Parent=MS.gene43803.t1
chr5.1 CDS 54693156 54695320 54693156 ID=cds.MS.gene43803.t1;Parent=MS.gene43803.t1
chr5.1 exon 54695412 54695492 54695412 ID=MS.gene43803.t1.exon3;Parent=MS.gene43803.t1
chr5.1 CDS 54695412 54695492 54695412 ID=cds.MS.gene43803.t1;Parent=MS.gene43803.t1
Gene Sequence

>MS.gene43803

ATGAGCGAACCCCATCATCCTGCTACCAACACTAACGAACCCGCCGCCGTCTCCGACCATCCCTGCGCCGCTGCCATTCTTGTTGATCAAGGTAATATAGTTTGCCTTCTCTATTTTATTATTTGCCGTCTCTTTATTACATGATGTTGTTTTACGTGTTGATGAAAAATTAGTTTCTAGGTTCACTTACGTGATGCATCATTACTTACATGATATACATATATATATATATATATATATATATATAGCTTTATGGTCACTATGTGTGTAACTTTATATAATCACCATCCTTTCCCCCAATGTTTTTTTAATAGTAATAGATAGCTTTATGGTCAACAAATTCTTATGCAGTCTAAGTTTTCTAGTGGCTTTTTGCTGTTATGTTGTTTTTGTTCAATTGTTGTCAAAAAATCATCAGTTGTTTCTGTTTATGTTGTTTCTGTTCAGTTGCCGCGACTTCAGAATGTTGTTTTCTAACACTGTTATCATATATTCATGTAAGTTTATGTCTGAAATCGTCACTTATGGTGGCCTTAATTGTAAATTTTGGTTTTTTCAGATTGTGTCAATAAATTGGTTAACAACATTCATGAACAAAATGTGCAACACGGACAAGGAAGTATTGCCAACAATTTACCTCACTTGGAAATGAAGTTTGATTCTGAGGCAGCGGCTTATGACTTTTATAATGAGTATAGTAAAAGAATTGGATTTGGTATTCGTCGAGAATATGGAAATAAAAGCAGAGTTGATGGAGTTTTGACTTCAAGAAGATTCACATGCTACAAAGAGGGTGTACGAGGTGTTGACAAAAGACGTCAACCAAAAGGGGAGCCTAGAGCAGAAATTAGAACAGGATGTTTGGCGCATATGGTTATTTCACTCGATCGGAAGATAGAGAAATATAAAGTTGTTGACTTTATAGCTGAACATAACCACCAACTTCAACCTGAGCATGTTCATATGATTCGCTCTCATCGACGCATATCTGAGACACAAGCATCACAAATTGTCTTGGGAGATGAATCTGGATTAAGACCAAAAGATTTGCATGAATATATATCCAAGCAAGCTGGTGGAATACAGACAGTTGGTTTTACAAAAAAAGACCTTACGAATTACCTTGAAACCAAAAGGAAACAGTCACTAAAGTATGGTGAGGTGGGTGCATTGATGATGTATTTCAAAAAAGAAAGTGAAAATCCCTCGTTCTATTATGACTTTCAAATGGATGTTGAAGAGCAAATAACAAATATATTTTGGGCGGATGCACAAATGATAAATGATTATGGGTATTTTGGTGATGTTATTACTTTTGACACCACATACAAGACAAATAAGGGTTATCGGCCGCTGGGAGTATTTGTTGGACTAAATAATCACAGGCAAACAGTCATTTTTGGTGCAGCATTGTTATATGACGAAACAATCCCTTCTTTCAAGTGGTTATTTGAAACATTTCTCAAGGCAATGGGTGGTAAAAAGCCAAAAACCATTTTGACGGATCAAGACACTGCGATGGCTAAGGCTATTTCTTTAGTTATGCCAGAAACATTTCATGGATTGTGCACTTGGCATATAAGACAGAATGCTTTACGGCATGTGAACCACTTATATCAAAAGAGTTCACAATTCGGTTTGGATTTTGAAGCATTGATAGATGTACATGAAGATGAGGGTGAATTTTTGAATGCTTGGAATTCTTTACTTGTTGAGCATAATATATTGGAAGGGTCGTGGTTGCATACAATTTATCAATTGAAGGAAAAATGGGCATGGACATATGTCCGGAAAACATTCACTGCAGGTATGAGATCTACTCAATTAAGTGAGAGCTTTAATGCTGATTTGAAGAACCATTTGAAGTCTGATTTAAATTTGGTACAATTTTTTACACACTTTAAAAGAGCTGTTAATGGTAAACGAAACAAAGAGTCAGAAGCTGAATATGAGTCAAAACATAAGCTGCCTAGATTGAAAATGAAGAAGGCTCGTATGCTCATACAAGCTGCAAATGTTTACACTCCTAGAATATTTGAGGAGTTCCAAGAGGAATATGAAGAATATCAAGACACTTGCGTAAAAGATTTGAAAGAAGGTTTGTATGCTGTCACAAACTATGATAATCCAACGGAGAGGATAGTTATGGGAAATGCTATGGAACAAAAAGTTTCATGTGATTGTCGTAAATTTGAGACACATGGCATCTTATGCAGTCATGCTTTGAAAGTTTTAGATGTCATGAACATTAAGTTAATTCCTGAAACCTATATACTGAAGCGATGGACAAGAAATGCAAGGTTGGGAAGTGATCAAGATTGGAAAGGGAGGCATGTTGAATTAGACATAAAAGCCCATTTCATGAAGCGGTACAATGAGTTATGTCCTCGAATGGTTAAGTTAACCAACAAAGCTTCAGAAACTCATGAAACTTACACATTTTTGTCCAAAGTTTATGAAGAGTCCAGCAAAATAATTGATGATATGTTGGCCAAAAAGTATGTGGATGGAGAATCAGAGGGCATGGTTCATGTATCCATATCAATTGCAAATGATGAAATTGACAATGTGGACACCGTTGGTATGGCAAAAGGCATAGCTAATCGAGAAAGTTCACGCAAGCGGAAAAAGCGATATAAATCTTGGATTGAGAAAAAAGATAAAAAGACAAAGATGTGCTCCAAGAGAAAGAGATCTGGTGAAAATTTAGTACAGTCGTTACCGGTAAGTAGTTTTTATCTATGTATTAAATTTTAGTACAGTCGTTACCGGTAAGAAACCATATTATTTATTTATCTTTTCTTACATTATGCAGCAAGAAACTACAGTTCAAGCGACACAATCAAGTCAAGTTGGCAATGGAACTCAACATCAAGCTACAATCCAAGAGTCATAA
Protein sequence

>MS.gene43803.t1

MSEPHHPATNTNEPAAVSDHPCAAAILVDQDCVNKLVNNIHEQNVQHGQGSIANNLPHLEMKFDSEAAAYDFYNEYSKRIGFGIRREYGNKSRVDGVLTSRRFTCYKEGVRGVDKRRQPKGEPRAEIRTGCLAHMVISLDRKIEKYKVVDFIAEHNHQLQPEHVHMIRSHRRISETQASQIVLGDESGLRPKDLHEYISKQAGGIQTVGFTKKDLTNYLETKRKQSLKYGEVGALMMYFKKESENPSFYYDFQMDVEEQITNIFWADAQMINDYGYFGDVITFDTTYKTNKGYRPLGVFVGLNNHRQTVIFGAALLYDETIPSFKWLFETFLKAMGGKKPKTILTDQDTAMAKAISLVMPETFHGLCTWHIRQNALRHVNHLYQKSSQFGLDFEALIDVHEDEGEFLNAWNSLLVEHNILEGSWLHTIYQLKEKWAWTYVRKTFTAGMRSTQLSESFNADLKNHLKSDLNLVQFFTHFKRAVNGKRNKESEAEYESKHKLPRLKMKKARMLIQAANVYTPRIFEEFQEEYEEYQDTCVKDLKEGLYAVTNYDNPTERIVMGNAMEQKVSCDCRKFETHGILCSHALKVLDVMNIKLIPETYILKRWTRNARLGSDQDWKGRHVELDIKAHFMKRYNELCPRMVKLTNKASETHETYTFLSKVYEESSKIIDDMLAKKYVDGESEGMVHVSISIANDEIDNVDTVGMAKGIANRESSRKRKKRYKSWIEKKDKKTKMCSKRKRSGENLVQSLPQETTVQATQSSQVGNGTQHQATIQES