AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene43834

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene43834.t1 MTR_2g096080 95.618 251 7 2 1 247 1 251 5.80e-177 486
MS.gene43834.t1 MTR_4g061823 61.009 218 78 4 33 247 29 242 9.82e-78 234
MS.gene43834.t1 MTR_4g061910 61.009 218 78 4 33 247 29 242 9.82e-78 234
MS.gene43834.t1 MTR_8g098725 47.799 159 65 7 55 202 132 283 5.39e-29 112
MS.gene43834.t1 MTR_8g098725 48.101 158 62 7 55 202 132 279 1.12e-28 110
MS.gene43834.t1 MTR_5g010120 43.860 114 43 2 87 200 130 222 5.81e-21 89.0
MS.gene43834.t1 MTR_1g073350 46.000 100 47 2 102 196 264 361 4.40e-20 88.6
MS.gene43834.t1 MTR_2g068730 74.074 54 14 0 142 195 154 207 7.00e-20 86.3
MS.gene43834.t1 MTR_1g044785 54.286 70 32 0 127 196 110 179 2.63e-19 84.0
MS.gene43834.t1 MTR_1g008220 32.867 143 79 4 62 199 150 280 3.06e-16 76.6
MS.gene43834.t1 MTR_3g091340 57.692 52 22 0 147 198 197 248 3.49e-15 73.2
MS.gene43834.t1 MTR_3g091340 57.692 52 22 0 147 198 190 241 3.76e-15 72.8
MS.gene43834.t1 MTR_3g091340 57.692 52 22 0 147 198 226 277 5.73e-15 72.8
MS.gene43834.t1 MTR_1g013450 42.188 64 37 0 140 203 244 307 3.56e-11 62.4
MS.gene43834.t1 MTR_4g128930 44.262 61 31 1 137 197 287 344 5.76e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene43834.t1 AT5G59990 52.899 138 52 2 66 203 91 215 1.65e-32 119
MS.gene43834.t1 AT5G41380 42.135 178 74 6 72 243 151 305 4.74e-30 114
MS.gene43834.t1 AT1G63820 47.581 124 56 2 103 221 139 258 8.39e-28 108
MS.gene43834.t1 AT1G04500 35.632 174 81 5 34 196 171 324 4.57e-24 99.4
MS.gene43834.t1 AT1G04500 35.632 174 81 5 34 196 180 333 4.93e-24 99.4
MS.gene43834.t1 AT1G04500 35.632 174 81 5 34 196 180 333 4.93e-24 99.4
MS.gene43834.t1 AT2G33350 46.535 101 47 2 103 196 244 344 2.49e-23 97.8
MS.gene43834.t1 AT2G33350 46.535 101 47 2 103 196 255 355 2.72e-23 97.8
MS.gene43834.t1 AT2G33350 46.535 101 47 2 103 196 264 364 3.56e-23 97.4
MS.gene43834.t1 AT2G33350 46.078 102 47 3 103 196 255 356 4.45e-22 94.4
MS.gene43834.t1 AT3G12890 54.651 86 38 1 131 215 119 204 9.89e-22 90.9
MS.gene43834.t1 AT5G53420 34.884 129 68 4 68 195 70 183 2.64e-16 75.1
MS.gene43834.t1 AT5G53420 34.884 129 68 4 68 195 70 183 2.64e-16 75.1
MS.gene43834.t1 AT5G53420 34.884 129 68 4 68 195 70 183 2.64e-16 75.1
MS.gene43834.t1 AT5G53420 34.884 129 68 4 68 195 149 262 4.41e-16 75.9
MS.gene43834.t1 AT5G59990 45.872 109 46 2 66 174 91 186 3.59e-15 72.0
MS.gene43834.t1 AT4G27900 32.787 122 59 3 100 198 140 261 1.19e-14 72.0
MS.gene43834.t1 AT4G27900 32.787 122 59 3 100 198 140 261 1.19e-14 72.0
MS.gene43834.t1 AT2G24790 43.056 72 37 1 125 192 199 270 4.51e-11 62.0
MS.gene43834.t1 AT5G15850 45.283 53 29 0 147 199 282 334 5.05e-11 62.4
MS.gene43834.t1 AT5G24930 43.333 60 34 0 139 198 283 342 8.02e-11 61.6

Find 61 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCATCTCCTTCTCCATTTA+TGG 0.057189 2.2:-5890114 MS.gene43834:CDS
CGGATAGGAGGCCACGAATT+AGG 0.208419 2.2:-5888261 MS.gene43834:CDS
GAACTTTAACAAGAAAATTA+AGG 0.269338 2.2:-5889262 MS.gene43834:intron
GGATAGGAGGCCACGAATTA+GGG 0.287165 2.2:-5888260 MS.gene43834:CDS
AGGATGAAGAAGATGAAAAT+TGG 0.295769 2.2:-5888162 MS.gene43834:CDS
AACAAGATTTGCAGCAACTA+TGG 0.316149 2.2:+5888123 None:intergenic
CATTCCCTTCAGTACAATAA+TGG 0.321357 2.2:-5889945 MS.gene43834:CDS
TCAGGGATATGTTCCATAAA+TGG 0.329934 2.2:+5890101 None:intergenic
TTGCAGTACCGGCGATTTGC+AGG 0.339328 2.2:-5889850 MS.gene43834:intron
TTTCAAGGAAGTTCTTCCTT+TGG 0.354729 2.2:-5888091 MS.gene43834:CDS
GAGTCTAACTCATTGAAATC+AGG 0.374546 2.2:+5890083 None:intergenic
CTTGTTCATGATGAGTTTCA+AGG 0.385277 2.2:-5888106 MS.gene43834:CDS
TCCTATCCGCCAATGTCTTT+CGG 0.395899 2.2:+5888275 None:intergenic
ATGTGGCTCCACTCGACTAT+AGG 0.414777 2.2:+5888202 None:intergenic
GAAAGTAGTATGATCATAGA+AGG 0.422699 2.2:-5889363 MS.gene43834:CDS
ATTCCCTTCAGTACAATAAT+GGG 0.429789 2.2:-5889944 MS.gene43834:CDS
TGCATCAAGATTGGAGTACT+TGG 0.434559 2.2:+5889984 None:intergenic
ATGCTCCTCTGCATCAAGAT+TGG 0.438379 2.2:+5889975 None:intergenic
CATTGGTGGTGGGGAGGAAG+AGG 0.451326 2.2:-5888182 MS.gene43834:CDS
GAAGGAGATGGAAGAAGAAA+GGG 0.457613 2.2:+5890125 None:intergenic
AGAAGGAGATGGAAGAAGAA+AGG 0.460726 2.2:+5890124 None:intergenic
AGAAGAAAGGGTGTTGAGAA+TGG 0.469563 2.2:+5890137 None:intergenic
GAGTGGAGCCACATTGGTGG+TGG 0.477837 2.2:-5888193 MS.gene43834:CDS
GTGAGGAAAGTTTGCAGTAC+CGG 0.479206 2.2:-5889861 MS.gene43834:CDS
TTGAAAGATACAGAAGAAAG+AGG 0.482706 2.2:-5889293 MS.gene43834:CDS
TGTTGAGAATGGAATATTGT+TGG 0.508851 2.2:+5890148 None:intergenic
AGTGGAGCCACATTGGTGGT+GGG 0.516680 2.2:-5888192 MS.gene43834:CDS
GCTCGACTCAGACGATGCTC+CGG 0.525201 2.2:-5889883 MS.gene43834:CDS
GCAAAACGTCCCCTAATTCG+TGG 0.530988 2.2:+5888250 None:intergenic
AGCAGTGGCTATAGTAGCTA+TGG 0.535103 2.2:-5890020 MS.gene43834:CDS
AGTCTAACTCATTGAAATCA+GGG 0.536173 2.2:+5890084 None:intergenic
GAGTCCCATTATTGTACTGA+AGG 0.542232 2.2:+5889940 None:intergenic
GTCGAGTGGAGCCACATTGG+TGG 0.548825 2.2:-5888196 MS.gene43834:CDS
GCCGAAAGACATTGGCGGAT+AGG 0.550818 2.2:-5888276 MS.gene43834:CDS
ACAGAAGAAAGAGGAATCAG+AGG 0.553930 2.2:-5889284 MS.gene43834:CDS
GTATGTTTGCCGAAAGACAT+TGG 0.562441 2.2:-5888284 MS.gene43834:CDS
GAGCCACATTGGTGGTGGGG+AGG 0.566927 2.2:-5888188 MS.gene43834:CDS
GAAAGACATTGGCGGATAGG+AGG 0.570627 2.2:-5888273 MS.gene43834:CDS
TCCATAAATGGAGAAGGAGA+TGG 0.571408 2.2:+5890113 None:intergenic
GTGGAGCCACATTGGTGGTG+GGG 0.572282 2.2:-5888191 MS.gene43834:CDS
TCAACTCCGAGTTATTCAGC+TGG 0.581544 2.2:+5890042 None:intergenic
TCAGCTGGGAGAGAGTGTCT+TGG 0.586821 2.2:+5890057 None:intergenic
GTACTCCAATCTTGATGCAG+AGG 0.591070 2.2:-5889980 MS.gene43834:CDS
ATACTACTTTCACTAGACAA+TGG 0.602525 2.2:+5889375 None:intergenic
AAGATTGGAGTACTTGGAGA+AGG 0.605160 2.2:+5889990 None:intergenic
CAACTCCGAGTTATTCAGCT+GGG 0.608456 2.2:+5890043 None:intergenic
CTTCCTCCCCACCACCAATG+TGG 0.613096 2.2:+5888185 None:intergenic
ATATGTTCCATAAATGGAGA+AGG 0.614198 2.2:+5890107 None:intergenic
GTACTGCAAACTTTCCTCAC+CGG 0.616956 2.2:+5889864 None:intergenic
AGTCCCATTATTGTACTGAA+GGG 0.624751 2.2:+5889941 None:intergenic
ATTCTAATATAATAGACCAA+AGG 0.637951 2.2:+5888075 None:intergenic
GATAGGAGGCCACGAATTAG+GGG 0.642140 2.2:-5888259 MS.gene43834:CDS
ATAGTGTACCTGCAAATCGC+CGG 0.645719 2.2:+5889842 None:intergenic
AGTGGCTATAGTAGCTATGG+TGG 0.656066 2.2:-5890017 MS.gene43834:CDS
ATAGTCGAGTGGAGCCACAT+TGG 0.657395 2.2:-5888199 MS.gene43834:CDS
TCTCTCCCAGCTGAATAACT+CGG 0.662391 2.2:-5890048 MS.gene43834:CDS
ATAAGAAACCTATAGTCGAG+TGG 0.670337 2.2:-5888210 MS.gene43834:CDS
ACTCAGACGATGCTCCGGTG+AGG 0.675434 2.2:-5889878 MS.gene43834:CDS
AATAACTCGGAGTTGAGCAG+TGG 0.681830 2.2:-5890035 MS.gene43834:CDS
TGTTTGCCGAAAGACATTGG+CGG 0.695673 2.2:-5888281 MS.gene43834:CDS
GCAACATAATCATCATCACG+TGG 0.724747 2.2:-5889403 MS.gene43834:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACAAATTTTTTTTTTTTTTG+CGG + chr2.2:5888649-5888668 None:intergenic 10.0%
!!! ATTTAAGAATGCTTTTTTAA+GGG - chr2.2:5888757-5888776 MS.gene43834:intron 15.0%
!!! GAGTATATTGTTATTAATAA+GGG + chr2.2:5889593-5889612 None:intergenic 15.0%
!!! TACGTTAAACTTTTTTTTTT+TGG - chr2.2:5888486-5888505 MS.gene43834:intron 15.0%
!!! TATTTAAGAATGCTTTTTTA+AGG - chr2.2:5888756-5888775 MS.gene43834:intron 15.0%
!! AGTGATAGAAAATTTCATAA+AGG + chr2.2:5889209-5889228 None:intergenic 20.0%
!! ATAAAAAGAACAAGAAGTAA+TGG - chr2.2:5889143-5889162 MS.gene43834:intron 20.0%
!! GAACTTTAACAAGAAAATTA+AGG - chr2.2:5888983-5889002 MS.gene43834:intron 20.0%
!! GTGATAGAAAATTTCATAAA+GGG + chr2.2:5889208-5889227 None:intergenic 20.0%
!! TAAAAAAAACCATGAATTTG+TGG + chr2.2:5888578-5888597 None:intergenic 20.0%
!! TACAAATTATTGTCATATAG+TGG - chr2.2:5889822-5889841 MS.gene43834:intron 20.0%
!! TGATAGAAAATTTCATAAAG+GGG + chr2.2:5889207-5889226 None:intergenic 20.0%
!! TGCAATTAAGGTTTAAATAA+TGG + chr2.2:5888549-5888568 None:intergenic 20.0%
!! TGGTGAAAAAATAAATTCAT+TGG - chr2.2:5889282-5889301 MS.gene43834:CDS 20.0%
!!! CAGTATACATTTTTTTTTGA+AGG + chr2.2:5889648-5889667 None:intergenic 20.0%
!!! GGAGTATATTGTTATTAATA+AGG + chr2.2:5889594-5889613 None:intergenic 20.0%
!!! TCGCATTTTAATAATTTTAG+AGG - chr2.2:5888453-5888472 MS.gene43834:intron 20.0%
! AACTAATTACGCATGTATAA+GGG + chr2.2:5889319-5889338 None:intergenic 25.0%
! AATTTGTACTAAATAGCGTA+TGG + chr2.2:5889810-5889829 None:intergenic 25.0%
! ATAACTTTGTGCATTTCTTT+AGG + chr2.2:5888701-5888720 None:intergenic 25.0%
! ATACATGTACACTATGAATT+TGG + chr2.2:5889615-5889634 None:intergenic 25.0%
! TAACTAATTACGCATGTATA+AGG + chr2.2:5889320-5889339 None:intergenic 25.0%
!!! ATACTGTTTATTGATTCTAG+TGG - chr2.2:5889662-5889681 MS.gene43834:intron 25.0%
!!! TGAATTTATTTTTTCACCAG+TGG + chr2.2:5889281-5889300 None:intergenic 25.0%
AACTCGATTAGAATATTGAC+CGG - chr2.2:5889716-5889735 MS.gene43834:intron 30.0%
AGGATGAAGAAGATGAAAAT+TGG - chr2.2:5890083-5890102 MS.gene43834:CDS 30.0%
AGTCTAACTCATTGAAATCA+GGG + chr2.2:5888164-5888183 None:intergenic 30.0%
ATACTACTTTCACTAGACAA+TGG + chr2.2:5888873-5888892 None:intergenic 30.0%
ATATGTTCCATAAATGGAGA+AGG + chr2.2:5888141-5888160 None:intergenic 30.0%
ATTCCCTTCAGTACAATAAT+GGG - chr2.2:5888301-5888320 MS.gene43834:intron 30.0%
CAAAGAGGAAAATAAATGCA+TGG - chr2.2:5889177-5889196 MS.gene43834:intron 30.0%
CCATCATTATACTACCATTT+AGG - chr2.2:5889686-5889705 MS.gene43834:intron 30.0%
CCTAAATGGTAGTATAATGA+TGG + chr2.2:5889689-5889708 None:intergenic 30.0%
CTAAAAGACACTTCAAATCA+TGG + chr2.2:5889425-5889444 None:intergenic 30.0%
GAAAGTAGTATGATCATAGA+AGG - chr2.2:5888882-5888901 MS.gene43834:intron 30.0%
TGTTGAGAATGGAATATTGT+TGG + chr2.2:5888100-5888119 None:intergenic 30.0%
TTGAAAGATACAGAAGAAAG+AGG - chr2.2:5888952-5888971 MS.gene43834:intron 30.0%
! ATTCTCACTTTCTTTTCTTC+TGG + chr2.2:5888933-5888952 None:intergenic 30.0%
! TCGAGTTTTTCATACCTAAA+TGG + chr2.2:5889703-5889722 None:intergenic 30.0%
! TTCTCACTTTCTTTTCTTCT+GGG + chr2.2:5888932-5888951 None:intergenic 30.0%
!! AGCGTTATAGCATTTTAGTA+CGG - chr2.2:5889852-5889871 MS.gene43834:CDS 30.0%
!!! ATTGTTTTAGATTGCAGTTG+TGG - chr2.2:5888430-5888449 MS.gene43834:intron 30.0%
AACAAGATTTGCAGCAACTA+TGG + chr2.2:5890125-5890144 None:intergenic 35.0%
AGTCCCATTATTGTACTGAA+GGG + chr2.2:5888307-5888326 None:intergenic 35.0%
ATAAGAAACCTATAGTCGAG+TGG - chr2.2:5890035-5890054 MS.gene43834:CDS 35.0%
ATGGACAAAACTGTACAAAG+AGG - chr2.2:5889162-5889181 MS.gene43834:intron 35.0%
CATTCCCTTCAGTACAATAA+TGG - chr2.2:5888300-5888319 MS.gene43834:intron 35.0%
CTTGTTCATGATGAGTTTCA+AGG - chr2.2:5890139-5890158 MS.gene43834:CDS 35.0%
GAGCAATTCAGCAAAAAAAG+CGG + chr2.2:5888346-5888365 None:intergenic 35.0%
GAGGTGTGAAAATCTTCTTA+CGG - chr2.2:5889478-5889497 MS.gene43834:intron 35.0%
GAGTCTAACTCATTGAAATC+AGG + chr2.2:5888165-5888184 None:intergenic 35.0%
GCTAATTGCTATAACTGGTT+TGG + chr2.2:5889747-5889766 None:intergenic 35.0%
TAGTCAGTGTATATAGCAAC+AGG - chr2.2:5889442-5889461 MS.gene43834:intron 35.0%
TCAGGGATATGTTCCATAAA+TGG + chr2.2:5888147-5888166 None:intergenic 35.0%
TTGTGGTTATGCTGCAATTA+AGG + chr2.2:5888561-5888580 None:intergenic 35.0%
TTTCAAGGAAGTTCTTCCTT+TGG - chr2.2:5890154-5890173 MS.gene43834:CDS 35.0%
! AACAGGTTCAGAATTTTGTG+AGG - chr2.2:5889459-5889478 MS.gene43834:intron 35.0%
! CGTTTTTCACAGAGGATTAA+CGG - chr2.2:5888816-5888835 MS.gene43834:intron 35.0%
! GTGTTGCTAATTGCTATAAC+TGG + chr2.2:5889752-5889771 None:intergenic 35.0%
! TTCTTTTCTTCTGGGCTATA+TGG + chr2.2:5888924-5888943 None:intergenic 35.0%
! TTGTTATTAATAAGGGCGTG+TGG + chr2.2:5889586-5889605 None:intergenic 35.0%
!! GTTATAGCATTTTAGTACGG+TGG - chr2.2:5889855-5889874 MS.gene43834:CDS 35.0%
ACAGAAGAAAGAGGAATCAG+AGG - chr2.2:5888961-5888980 MS.gene43834:intron 40.0%
AGAAGGAGATGGAAGAAGAA+AGG + chr2.2:5888124-5888143 None:intergenic 40.0%
ATTCAGCAAAAAAAGCGGAG+AGG + chr2.2:5888341-5888360 None:intergenic 40.0%
CTTGGAGAACAGAATCAATC+AGG - chr2.2:5889549-5889568 MS.gene43834:intron 40.0%
GAAGGAGATGGAAGAAGAAA+GGG + chr2.2:5888123-5888142 None:intergenic 40.0%
GAGTCCCATTATTGTACTGA+AGG + chr2.2:5888308-5888327 None:intergenic 40.0%
GCAACATAATCATCATCACG+TGG - chr2.2:5888842-5888861 MS.gene43834:intron 40.0%
GCAGCATAACCACAAATTCA+TGG - chr2.2:5888566-5888585 MS.gene43834:intron 40.0%
GTATGTTTGCCGAAAGACAT+TGG - chr2.2:5889961-5889980 MS.gene43834:CDS 40.0%
TCCATAAATGGAGAAGGAGA+TGG + chr2.2:5888135-5888154 None:intergenic 40.0%
TCCATCTCCTTCTCCATTTA+TGG - chr2.2:5888131-5888150 MS.gene43834:CDS 40.0%
TGCATTTCTTTAGGTACGCT+TGG + chr2.2:5888692-5888711 None:intergenic 40.0%
TTCAGCAAAAAAAGCGGAGA+GGG + chr2.2:5888340-5888359 None:intergenic 40.0%
! AAGATTGGAGTACTTGGAGA+AGG + chr2.2:5888258-5888277 None:intergenic 40.0%
! TCATGCAACGTTTTTCACAG+AGG - chr2.2:5888808-5888827 MS.gene43834:intron 40.0%
! TGCATCAAGATTGGAGTACT+TGG + chr2.2:5888264-5888283 None:intergenic 40.0%
!! AGAAGAAAGGGTGTTGAGAA+TGG + chr2.2:5888111-5888130 None:intergenic 40.0%
!! TATAACTGGTTTGGCAACAC+CGG + chr2.2:5889738-5889757 None:intergenic 40.0%
AAAAAGCGGAGAGGGGATAA+TGG + chr2.2:5888332-5888351 None:intergenic 45.0%
AATAACTCGGAGTTGAGCAG+TGG - chr2.2:5888210-5888229 MS.gene43834:CDS 45.0%
AGCAGTGGCTATAGTAGCTA+TGG - chr2.2:5888225-5888244 MS.gene43834:CDS 45.0%
AGTGGCTATAGTAGCTATGG+TGG - chr2.2:5888228-5888247 MS.gene43834:CDS 45.0%
ATAGTGTACCTGCAAATCGC+CGG + chr2.2:5888406-5888425 None:intergenic 45.0%
ATGCTCCTCTGCATCAAGAT+TGG + chr2.2:5888273-5888292 None:intergenic 45.0%
CAACTCCGAGTTATTCAGCT+GGG + chr2.2:5888205-5888224 None:intergenic 45.0%
CTCCAAGATCTTGACAGGAA+TGG + chr2.2:5889536-5889555 None:intergenic 45.0%
CTCCATTCCTGTCAAGATCT+TGG - chr2.2:5889531-5889550 MS.gene43834:intron 45.0%
CTGTTCTCCAAGATCTTGAC+AGG + chr2.2:5889541-5889560 None:intergenic 45.0%
GTACTCCAATCTTGATGCAG+AGG - chr2.2:5888265-5888284 MS.gene43834:CDS 45.0%
GTACTGCAAACTTTCCTCAC+CGG + chr2.2:5888384-5888403 None:intergenic 45.0%
GTGAGGAAAGTTTGCAGTAC+CGG - chr2.2:5888384-5888403 MS.gene43834:intron 45.0%
TCAACTCCGAGTTATTCAGC+TGG + chr2.2:5888206-5888225 None:intergenic 45.0%
TCAGCAAAAAAAGCGGAGAG+GGG + chr2.2:5888339-5888358 None:intergenic 45.0%
TCCTATCCGCCAATGTCTTT+CGG + chr2.2:5889973-5889992 None:intergenic 45.0%
TCTCTCCCAGCTGAATAACT+CGG - chr2.2:5888197-5888216 MS.gene43834:CDS 45.0%
TGTTTGCCGAAAGACATTGG+CGG - chr2.2:5889964-5889983 MS.gene43834:CDS 45.0%
!!! TTAAATTTTAAATTTTTTTG+CGG + chr2.2:5888614-5888633 None:intergenic 5.0%
ATAGTCGAGTGGAGCCACAT+TGG - chr2.2:5890046-5890065 MS.gene43834:CDS 50.0%
ATGTGGCTCCACTCGACTAT+AGG + chr2.2:5890046-5890065 None:intergenic 50.0%
CTTATGCATGCTACCTCCAC+AGG - chr2.2:5889246-5889265 MS.gene43834:intron 50.0%
GATAGGAGGCCACGAATTAG+GGG - chr2.2:5889986-5890005 MS.gene43834:CDS 50.0%
GCAAAACGTCCCCTAATTCG+TGG + chr2.2:5889998-5890017 None:intergenic 50.0%
GGATAGGAGGCCACGAATTA+GGG - chr2.2:5889985-5890004 MS.gene43834:CDS 50.0%
! GAAAGACATTGGCGGATAGG+AGG - chr2.2:5889972-5889991 MS.gene43834:CDS 50.0%
CGGATAGGAGGCCACGAATT+AGG - chr2.2:5889984-5890003 MS.gene43834:CDS 55.0%
! AGTGGAGCCACATTGGTGGT+GGG - chr2.2:5890053-5890072 MS.gene43834:CDS 55.0%
! GCCGAAAGACATTGGCGGAT+AGG - chr2.2:5889969-5889988 MS.gene43834:CDS 55.0%
!! TCAGCTGGGAGAGAGTGTCT+TGG + chr2.2:5888191-5888210 None:intergenic 55.0%
!! TTGCAGTACCGGCGATTTGC+AGG - chr2.2:5888395-5888414 MS.gene43834:intron 55.0%
ACTCAGACGATGCTCCGGTG+AGG - chr2.2:5888367-5888386 MS.gene43834:intron 60.0%
CCACAGGTAGACACTGCCAC+TGG - chr2.2:5889262-5889281 MS.gene43834:intron 60.0%
CCAGTGGCAGTGTCTACCTG+TGG + chr2.2:5889265-5889284 None:intergenic 60.0%
CTTCCTCCCCACCACCAATG+TGG + chr2.2:5890063-5890082 None:intergenic 60.0%
GAGTGGAGCCACATTGGTGG+TGG - chr2.2:5890052-5890071 MS.gene43834:CDS 60.0%
GCTCGACTCAGACGATGCTC+CGG - chr2.2:5888362-5888381 MS.gene43834:intron 60.0%
GTCGAGTGGAGCCACATTGG+TGG - chr2.2:5890049-5890068 MS.gene43834:CDS 60.0%
GTGGCAGTGTCTACCTGTGG+AGG + chr2.2:5889262-5889281 None:intergenic 60.0%
!! CATTGGTGGTGGGGAGGAAG+AGG - chr2.2:5890063-5890082 MS.gene43834:CDS 60.0%
!! GTGGAGCCACATTGGTGGTG+GGG - chr2.2:5890054-5890073 MS.gene43834:CDS 60.0%
!! GAGCCACATTGGTGGTGGGG+AGG - chr2.2:5890057-5890076 MS.gene43834:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 5888078 5890189 5888078 ID=MS.gene43834
chr2.2 mRNA 5888078 5890189 5888078 ID=MS.gene43834.t1;Parent=MS.gene43834
chr2.2 exon 5889851 5890189 5889851 ID=MS.gene43834.t1.exon1;Parent=MS.gene43834.t1
chr2.2 CDS 5889851 5890189 5889851 ID=cds.MS.gene43834.t1;Parent=MS.gene43834.t1
chr2.2 exon 5889263 5889439 5889263 ID=MS.gene43834.t1.exon2;Parent=MS.gene43834.t1
chr2.2 CDS 5889263 5889439 5889263 ID=cds.MS.gene43834.t1;Parent=MS.gene43834.t1
chr2.2 exon 5888078 5888305 5888078 ID=MS.gene43834.t1.exon3;Parent=MS.gene43834.t1
chr2.2 CDS 5888078 5888305 5888078 ID=cds.MS.gene43834.t1;Parent=MS.gene43834.t1
Gene Sequence

>MS.gene43834

ATGTACGCACACTCTAATTCCAACAATATTCCATTCTCAACACCCTTTCTTCTTCCATCTCCTTCTCCATTTATGGAACATATCCCTGATTTCAATGAGTTAGACTCATTCCAAGACACTCTCTCCCAGCTGAATAACTCGGAGTTGAGCAGTGGCTATAGTAGCTATGGTGGATCACCTTCTCCAAGTACTCCAATCTTGATGCAGAGGAGCATTAGCAGTCATTCCCTTCAGTACAATAATGGGACTCACCATTATCCCCTCTCCGCTTTTTTTGCTGAATTGCTCGACTCAGACGATGCTCCGGTGAGGAAAGTTTGCAGTACCGGCGATTTGCAGGTACACTATGCTCATTGTTTTAGATTGCAGTTGTGGTCGCATTTTAATAATTTTAGAGGTGTGTGCAACTACGTTAAACTTTTTTTTTTTGGTCTTGTCAACGAGTTAACATTTTTTTTTATATATAAACCATTATTTAAACCTTAATTGCAGCATAACCACAAATTCATGGTTTTTTTTAAAATTTCTTACAACCGCAAAAAAATTTAAAATTTAAAATTTCTTACAACCGCAAAAAAAAAAAAAATTTGTTTTTCAAATTAAGAATCATACCAAGCGTACCTAAAGAAATGCACAAAGTTATTTTTTTTTTAAACTTGTTATGAGTATTAAGTAAGATATTTAAGAATGCTTTTTTAAGGGTTTAATAATGTTTTTTGTTTTACTAATTTCATGCAACGTTTTTCACAGAGGATTAACGGAATGCAACATAATCATCATCACGTGGATAGTCCATTGTCTAGTGAAAGTAGTATGATCATAGAAGGTATGAGCAGAGTTTGTCCATATAGCCCAGAAGAAAAGAAAGTGAGAATTGAAAGATACAGAAGAAAGAGGAATCAGAGGAACTTTAACAAGAAAATTAAGGTTAACTCTTGTACAAAATACACACATGACACACTTCAATTTTGTTATATTTGTCTCATTTTACTAGTTTTCTATGAATTAATTTAAAAGTGCTGCACTAATTTAACTTTCATGCACTAATTTAAATATAAAAAGAATATAAAAAGAACAAGAAGTAATGGACAAAACTGTACAAAGAGGAAAATAAATGCATGGTAGACCCCTTTATGAAATTTTCTATCACTCAAATCATATATAGAGACTTATGCATGCTACCTCCACAGGTAGACACTGCCACTGGTGAAAAAATAAATTCATTGGAAAATATCTTACCCTTATACATGCGTAATTAGTTATGATTTGTTGACAATGTAAAACTTTTTACGAACAATATGTATCAAAATAAAATTCAACATGTAATATGACAAGAATTTGTTTCCATGATTTGAAGTGTCTTTTAGTCAGTGTATATAGCAACAGGTTCAGAATTTTGTGAGGTGTGAAAATCTTCTTACGGATTTGTCTTATTCTCTAATGTAACTGCTAACTCCATTCCTGTCAAGATCTTGGAGAACAGAATCAATCAGGAATCTTATTAGCCACACGCCCTTATTAATAACAATATACTCCAAATTCATAGTGTACATGTATACTTTTTATTCCTTCAAAAAAAAATGTATACTGTTTATTGATTCTAGTGGTCCATCATTATACTACCATTTAGGTATGAAAAACTCGATTAGAATATTGACCGGTGTTGCCAAACCAGTTATAGCAATTAGCAACACTATTAGCAGTATTTGAACAAATTGTTATTGTTGCTCCATACGCTATTTAGTACAAATTATTGTCATATAGTGGCTATAACAGCGTTATAGCATTTTAGTACGGTGGAATTTGAACAAACATCTATTTTTCGCAATTCACGCAATTGACAACACTTTTATTGACTAATTTTTATTTTTTGTTATGAATCAGTATGTTTGCCGAAAGACATTGGCGGATAGGAGGCCACGAATTAGGGGACGTTTTGCGAGAAATGATGAAATTGATAAGAAACCTATAGTCGAGTGGAGCCACATTGGTGGTGGGGAGGAAGAGGATGAAGAAGATGAAAATTGGAATAATATCTTTAATTCCATAGTTGCTGCAAATCTTGTTCATGATGAGTTTCAAGGAAGTTCTTCCTTTGGTCTATTATATTAG
Protein sequence

>MS.gene43834.t1

MYAHSNSNNIPFSTPFLLPSPSPFMEHIPDFNELDSFQDTLSQLNNSELSSGYSSYGGSPSPSTPILMQRSISSHSLQYNNGTHHYPLSAFFAELLDSDDAPVRKVCSTGDLQRINGMQHNHHHVDSPLSSESSMIIEGMSRVCPYSPEEKKVRIERYRRKRNQRNFNKKIKYVCRKTLADRRPRIRGRFARNDEIDKKPIVEWSHIGGGEEEDEEDENWNNIFNSIVAANLVHDEFQGSSSFGLLY