AlfalfaGEDB | MS.gene43901

M. sativa cultivar XinJiangDaYe / MS.gene43901

KEGG: -
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005811 GO:0008080 GO:0012511 GO:0016021 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0031224 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0110165
PFAM: PF00583.28 PF01277.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene43901.t1	AES96258.2	78.5	353	43	2	12	355	9	337	2.90E-140	508.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene43901.t1	P29531	56.3	126	47	2	10	128	18	142	1.1e-26	122.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene43901.t1	G7K2T2	78.5	353	43	2	12	355	9	337	2.1e-140	508.4

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene43901.t1	TR	GNAT

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene43901.t1	MTR_5g035040	78.470	353	43	2	12	355	9	337	0.0	529
MS.gene43901.t1	MTR_5g035060	57.308	260	53	7	154	355	1	260	9.53e-77	239
MS.gene43901.t1	MTR_7g033775	73.333	135	33	2	5	137	15	148	4.15e-43	149
MS.gene43901.t1	MTR_4g105200	55.422	83	37	0	35	117	36	118	4.35e-24	99.0
MS.gene43901.t1	MTR_5g035050	87.755	49	6	0	307	355	29	77	2.13e-22	91.7
MS.gene43901.t1	MTR_6g005040	43.590	117	66	0	18	134	41	157	1.98e-16	77.4
MS.gene43901.t1	MTR_3g109190	35.135	111	71	1	27	137	24	133	4.86e-16	75.5
MS.gene43901.t1	MTR_1g090250	36.111	108	69	0	34	141	27	134	5.34e-16	75.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene43901.t1	AT1G24040	56.701	194	69	2	176	354	80	273	3.37e-67	216
MS.gene43901.t1	AT1G24040	56.701	194	69	2	176	354	80	273	3.37e-67	216
MS.gene43901.t1	AT1G24040	56.701	194	69	2	176	354	80	273	3.37e-67	216
MS.gene43901.t1	AT3G01570	43.885	139	75	3	8	146	7	142	2.95e-30	115
MS.gene43901.t1	AT3G27660	50.000	116	57	1	31	146	43	157	6.14e-21	90.1
MS.gene43901.t1	AT3G27660	50.000	116	57	1	31	146	43	157	6.14e-21	90.1
MS.gene43901.t1	AT5G40420	53.846	104	48	0	34	137	48	151	2.29e-19	85.9
MS.gene43901.t1	AT5G51210	39.773	88	53	0	30	117	17	104	2.59e-17	78.6
MS.gene43901.t1	AT4G25140	38.776	98	55	1	19	116	27	119	6.03e-14	70.1
MS.gene43901.t1	AT2G25890	44.828	87	48	0	31	117	44	130	3.03e-11	62.4

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Find 93 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAATATTTGATTAAACGA+AGG	0.558233	5.2:+25474711	MS.gene43901:CDS
AACAGCTTATGGTGGAGTGG+TGG	0.622508	5.2:+25474372	MS.gene43901:CDS
AACATGTTGATATAACATTT+CGG	0.331289	5.2:-25474674	None:intergenic
AACCAAAATTGAACCGGATT+TGG	0.284192	5.2:-25474576	None:intergenic
AACTCGAGTTGCTCCTGTAG+AGG	0.565489	5.2:-25474344	None:intergenic
AACTTCATAACGATGTTGAG+GGG	0.671058	5.2:-25474021	None:intergenic
AAGCCAATGACAATGGTGGC+TGG	0.533271	5.2:-25474227	None:intergenic
AATTACATACCCCAGGATCA+AGG	0.516525	5.2:+25474320	MS.gene43901:CDS
ACACTGGTATCGTAACAGCG+TGG	0.804350	5.2:-25473996	None:intergenic
ACATGTTGATATAACATTTC+GGG	0.273357	5.2:-25474673	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGCAAATTTCAGCAACT+TGG	-	chr5.2:25474921-25474940	None:intergenic	30.0%
AATAAGCTGAAATCAGCTTA+TGG	-	chr5.2:25475186-25475205	None:intergenic	30.0%
CCAAAAATGTTTCAGTTTGT+AGG	-	chr5.2:25475123-25475142	None:intergenic	30.0%
CTTTCACATATAGATACACT+TGG	-	chr5.2:25475342-25475361	None:intergenic	30.0%
GATTAAGGCTGTATTTAGAT+TGG	+	chr5.2:25475072-25475091	MS.gene43901:intron	30.0%
GGTTACTTGAATCTTAAACT+TGG	-	chr5.2:25475593-25475612	None:intergenic	30.0%
TGCTGAAATTTGCATTTCTT+TGG	+	chr5.2:25474924-25474943	MS.gene43901:intron	30.0%
TGTGTTCAAAAACTATCCTT+GGG	-	chr5.2:25475219-25475238	None:intergenic	30.0%
TGTTTGAAAATGTGAGCTAT+GGG	-	chr5.2:25475641-25475660	None:intergenic	30.0%
TTCACATATAGATACACTTG+GGG	-	chr5.2:25475340-25475359	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	25473978	25476005	25473978	ID=MS.gene43901
chr5.2	mRNA	25473978	25476005	25473978	ID=MS.gene43901.t1;Parent=MS.gene43901
chr5.2	exon	25473978	25474897	25473978	ID=MS.gene43901.t1.exon1;Parent=MS.gene43901.t1
chr5.2	CDS	25473978	25474897	25473978	ID=cds.MS.gene43901.t1;Parent=MS.gene43901.t1
chr5.2	exon	25475753	25476005	25475753	ID=MS.gene43901.t1.exon2;Parent=MS.gene43901.t1
chr5.2	CDS	25475753	25476005	25475753	ID=cds.MS.gene43901.t1;Parent=MS.gene43901.t1

Gene Sequence

>MS.gene43901

ATGTCAGAACTTACACCACCACGCTGTTACGATACCAGTGTTACCCCTCAACATCGTTATGAAGTTGGTGGAGTTACTACTCATTACTCAGAGAAAAGAAGTCCATCAACTTCTCAAGTGCTTGCCGTAATTACCGGCCTTCCTGTAGGCGGTGTACTGCTTGCACTTGCTGGACTCTCCCTTCTTGGAACACTCACTGGACTGGGGGTAACAAGCCCACTTTTCATCCTCTTCAGCCCTGTTCTTGTTCCAGCCACCATTGTCATTGGCTTTGCTGTCGCTGTCTTTTTGGCGTCGGCAGCTTTTGGGCTGATGGCACTGTCCTTGTTCTCATGGGTCATGAATTACATACCCCAGGATCAAGGGCCTCTACAGGAGCAACTCGAGTTGGAAAAACAGCTTATGGTGGAGTGGTGGTCGGAGTGGTGTAACATGAAAGTTTTCTTCAGTTCTATTACCATGGCAGCAATTCTTTCACTCTCCTCCTTAGGCCCTCAAAATCATTGGTTCAACATCACCAAAACCACTCGTCGAGTCCTCACAAACTCCGAACTAACCAACCTGCAACACCTCGAATCCTTCCTCTACTTCCAAAACACCAAATCCGGTTCAATTTTGGTTCGAGTAATGAGAGACAACGAAATTGACCCAATAGTCTGTTTACTCGCAGATGCGTTCGCTGAATTGATGTTGTTCCCGAAATGTTATATCAACATGTTGAGATTCCTTATGAAACAATATTTGATTAAACGAAGGATTGGGTTTTATAGAGGAGTTGCTGATGGTGAAGAAATGCAGTTGGCTGGCACTGTTGAGATTTGTTTTGATAAAAATGGTGTTAATTCTTCTCGTGCTTCACCCACTCCTCCCAAGGATTCGCCTTACGCTTATAGCTTGGCCGTGGATAAATCTCTTAGAAGGTAAGCATTATTTATTGCGTCCAAGTTGCTGAAATTTGCATTTCTTTGGTAAAATTAGCTCAAGTGTCATGAACCATAAAGAACTAATTTGACCAAGGGAATACATATTCTTGGTCTAATTTGATTGGCTATATGCATATCCAGGGGCTGAATGTGTAGTTTCGATTATTCAAAGATTAAGGCTGTATTTAGATTGGTTTATGAATAACTTATTTGAGCTTACCTACAAACTGAAACATTTTTGGGTGTGTTTGTTAGAGCTTATGAAAATAGTTTAAAACATGTCCATAAGCTGATTTCAGCTTATTCCAACAAACTCCCAAGGATAGTTTTTGAACACAATTTGCAAATTATATGAAAACAGCTTAACCACATTTTCTTGTTGCTATTATAAGTAGCTTAGACATAAGCGCTAAATTAAGTTGTTTATTCAAACATACCCCAAGTGTATCTATATGTGAAAGCTAGAACTACTAGATGCGGGTTAAATCGATATTCAGAAACTAGTTTGATTATTAATTGTTAACTCTTCTGCTAGATTATGTAGGATATTTCTTGGGTGAATTTTGGAGACAGCTTGTCAGTATTATATACTTACAACAATTTTAACTTTTCTGATCTTACAGCTAGATAAATATTTTCATCAGTAGCAATTTTAGTTGGGAAAACCTGCAATTTAAATAATTAAGCTACCAAGTTTAAGATTCAAGTAACCGAAAATATATTCTCGTCGCAAAATTCCCATAGCTCACATTTTCAAACACATGGTATGTCTTCTCATTAAGCAAAAGAAAAAAAATCGATTGTCTGTTTTAACTTTCTAAAAACGTGTTTCTGATATTTAATTCCCTCCAGGAGGGGCATTGGACGGCATCTTTTAAAGGCAAGTGAGGAACTGATTTCTCGGATGAGTTCATCAAGAGAAGTTTACTTGCATTGCAGAATGGTTGATGAAGCTCCACTTAACATGTATACAAAAGCTGATTACAAAGTTGTTACACAGCAGTATTTTAGTCCTGCTGATGTTGCAGAGACGAAAACATTTGATGTGCAAGAAACTTCCTCTCCTAACTATGCCTTCAAAAACAGATGTGCCATGTTCCGATGA

Protein sequence

>MS.gene43901.t1

MSELTPPRCYDTSVTPQHRYEVGGVTTHYSEKRSPSTSQVLAVITGLPVGGVLLALAGLSLLGTLTGLGVTSPLFILFSPVLVPATIVIGFAVAVFLASAAFGLMALSLFSWVMNYIPQDQGPLQEQLELEKQLMVEWWSEWCNMKVFFSSITMAAILSLSSLGPQNHWFNITKTTRRVLTNSELTNLQHLESFLYFQNTKSGSILVRVMRDNEIDPIVCLLADAFAELMLFPKCYINMLRFLMKQYLIKRRIGFYRGVADGEEMQLAGTVEICFDKNGVNSSRASPTPPKDSPYAYSLAVDKSLRRRGIGRHLLKASEELISRMSSSREVYLHCRMVDEAPLNMYTKADYKVVTQQYFSPADVAETKTFDVQETSSPNYAFKNRCAMFR