Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43904.t1 | XP_003613302.2 | 98.2 | 166 | 3 | 0 | 1 | 166 | 132 | 297 | 3.00E-87 | 331.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43904.t1 | G7K2T4 | 98.2 | 166 | 3 | 0 | 1 | 166 | 101 | 266 | 2.1e-87 | 331.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene43904.t1 | TR | GNAT |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43904.t1 | MTR_5g035060 | 98.193 | 166 | 3 | 0 | 1 | 166 | 101 | 266 | 2.69e-122 | 347 |
| MS.gene43904.t1 | MTR_5g035040 | 68.485 | 165 | 23 | 3 | 1 | 165 | 207 | 342 | 1.07e-69 | 216 |
| MS.gene43904.t1 | MTR_5g035050 | 83.077 | 65 | 11 | 0 | 112 | 176 | 29 | 93 | 1.17e-32 | 113 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43904.t1 | AT1G24040 | 62.500 | 168 | 60 | 2 | 1 | 166 | 114 | 280 | 4.29e-74 | 226 |
| MS.gene43904.t1 | AT1G24040 | 62.500 | 168 | 60 | 2 | 1 | 166 | 114 | 280 | 4.29e-74 | 226 |
| MS.gene43904.t1 | AT1G24040 | 62.500 | 168 | 60 | 2 | 1 | 166 | 114 | 280 | 4.29e-74 | 226 |
Find 31 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATAGAGGCAGTGGTGTTAA+TGG | 0.295778 | 5.4:-24944283 | MS.gene43904:CDS |
| CAAATATAAGGCTTATCTTT+CGG | 0.336668 | 5.4:+24944166 | None:intergenic |
| ACAGCCATGTTACAAATATA+AGG | 0.346669 | 5.4:+24944154 | None:intergenic |
| GGCTTATCTTTCGGCGGATC+CGG | 0.353217 | 5.4:+24944175 | None:intergenic |
| GTTTCCGAAAGGGTATATTA+AGG | 0.368887 | 5.4:-24944383 | MS.gene43904:CDS |
| AACACCTTAATATACCCTTT+CGG | 0.432789 | 5.4:+24944379 | None:intergenic |
| TGCGTCTCTGCAACAACAGC+AGG | 0.436194 | 5.4:+24941251 | None:intergenic |
| TCTCCCTTCAGGAGGGGCAT+TGG | 0.444220 | 5.4:-24941425 | MS.gene43904:intron |
| GAAGAGGAAATGCAGTTGGC+TGG | 0.454362 | 5.4:-24944250 | MS.gene43904:CDS |
| TAATTCTACTCTTCCGTCGC+CGG | 0.460000 | 5.4:-24944194 | MS.gene43904:CDS |
| GAGGAGTTTGATGCCGCATA+TGG | 0.462290 | 5.4:-24944323 | MS.gene43904:CDS |
| CAAGCGAGGAACTGATTTCT+CGG | 0.465423 | 5.4:-24941385 | MS.gene43904:CDS |
| ATTTCTCGGATGAGTTCATC+AGG | 0.474442 | 5.4:-24941371 | MS.gene43904:CDS |
| CTGTTGATAAATCTCTTAGA+AGG | 0.476108 | 5.4:-24944135 | MS.gene43904:intron |
| CGCTATTGTGTGCTTGCTTG+CGG | 0.480160 | 5.4:-24944428 | MS.gene43904:CDS |
| CCTTCAGGAGGGGCATTGGA+TGG | 0.505384 | 5.4:-24941421 | MS.gene43904:intron |
| CATTGGATGGCATCTTCTAA+AGG | 0.517341 | 5.4:-24941408 | MS.gene43904:CDS |
| TGAAACAGTATTTGATTGAA+CGG | 0.524045 | 5.4:-24944345 | MS.gene43904:CDS |
| AAGAGGAAATGCAGTTGGCT+GGG | 0.542657 | 5.4:-24944249 | MS.gene43904:CDS |
| TCTTTCGGCGGATCCGGCGA+CGG | 0.556296 | 5.4:+24944181 | None:intergenic |
| GGCAGTGGTGTTAATGGTGA+TGG | 0.556640 | 5.4:-24944277 | MS.gene43904:CDS |
| AATCGATGATGTTTCCGAAA+GGG | 0.568903 | 5.4:-24944393 | MS.gene43904:CDS |
| GCAATCAAAGTCGCCATATG+CGG | 0.587969 | 5.4:+24944310 | None:intergenic |
| ATATAAGGCTTATCTTTCGG+CGG | 0.617990 | 5.4:+24944169 | None:intergenic |
| TAAGCCTTATATTTGTAACA+TGG | 0.633641 | 5.4:-24944158 | MS.gene43904:CDS |
| TAATGGTGATGGTGAAGAAG+AGG | 0.637013 | 5.4:-24944266 | MS.gene43904:CDS |
| GAATCGATGATGTTTCCGAA+AGG | 0.637311 | 5.4:-24944394 | MS.gene43904:CDS |
| TGAAGAAGAGGAAATGCAGT+TGG | 0.653928 | 5.4:-24944254 | MS.gene43904:CDS |
| GCATCTTCTAAAGGCAAGCG+AGG | 0.659909 | 5.4:-24941399 | MS.gene43904:CDS |
| GCGTCTCTGCAACAACAGCA+GGG | 0.660379 | 5.4:+24941252 | None:intergenic |
| AACAGTATTTGATTGAACGG+AGG | 0.685549 | 5.4:-24944342 | MS.gene43904:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAAATAATAAATAGTTTA+CGG | - | chr5.4:24943403-24943422 | MS.gene43904:intron | 10.0% |
| !!! | AAATGTAATTAATTTTGTAT+AGG | - | chr5.4:24943307-24943326 | MS.gene43904:intron | 10.0% |
| !!! | AATGTAATTAATTTTGTATA+GGG | - | chr5.4:24943308-24943327 | MS.gene43904:intron | 10.0% |
| !! | AAAGAGTAATAAATAGTTAA+TGG | + | chr5.4:24943585-24943604 | None:intergenic | 15.0% |
| !! | AAATAACATTAATGTTTCAT+TGG | + | chr5.4:24943551-24943570 | None:intergenic | 15.0% |
| !! | AAATGTAATCAATTATGTAT+TGG | + | chr5.4:24943683-24943702 | None:intergenic | 15.0% |
| !! | ATGTTATAATAGTTATAACA+AGG | + | chr5.4:24943920-24943939 | None:intergenic | 15.0% |
| !! | TAAAAATTAGTTAATGTGTT+TGG | + | chr5.4:24942177-24942196 | None:intergenic | 15.0% |
| !! | TAAATAGTTAATGGTATAAA+AGG | + | chr5.4:24943576-24943595 | None:intergenic | 15.0% |
| !! | TATCAAATTTGCAAAAAATT+TGG | - | chr5.4:24942346-24942365 | MS.gene43904:intron | 15.0% |
| !! | TTTCCATTATTTAAAGATTA+AGG | - | chr5.4:24942602-24942621 | MS.gene43904:intron | 15.0% |
| !!! | AAAAATTTGGACTATTTTAA+CGG | - | chr5.4:24942359-24942378 | MS.gene43904:intron | 15.0% |
| !! | ACAAAATTATCCTTCATTAA+CGG | - | chr5.4:24943350-24943369 | MS.gene43904:intron | 20.0% |
| !! | ACCAAAATGACTAATAATTT+GGG | + | chr5.4:24943269-24943288 | None:intergenic | 20.0% |
| !! | ACCAATATAATACATATTCT+GGG | - | chr5.4:24942534-24942553 | MS.gene43904:intron | 20.0% |
| !! | AGCTATATTTAATATCAAAG+AGG | + | chr5.4:24942831-24942850 | None:intergenic | 20.0% |
| !! | ATATAGCTTATACATAAACA+TGG | - | chr5.4:24942843-24942862 | MS.gene43904:intron | 20.0% |
| !! | ATGCTAAAAGTTACTATTAT+AGG | + | chr5.4:24944056-24944075 | None:intergenic | 20.0% |
| !! | ATTTCTTAATCTGTGTAAAA+TGG | - | chr5.4:24943699-24943718 | MS.gene43904:intron | 20.0% |
| !! | CAACCTTAATCTTTAAATAA+TGG | + | chr5.4:24942608-24942627 | None:intergenic | 20.0% |
| !! | GAAATGCATAAATTTAACAA+TGG | + | chr5.4:24942121-24942140 | None:intergenic | 20.0% |
| !! | TGTAAAACGACATATAATTT+GGG | + | chr5.4:24943525-24943544 | None:intergenic | 20.0% |
| !! | TTGTAAAACGACATATAATT+TGG | + | chr5.4:24943526-24943545 | None:intergenic | 20.0% |
| !!! | AAATCAACTATACATTCTTT+TGG | + | chr5.4:24941636-24941655 | None:intergenic | 20.0% |
| !!! | AACATAAATTTCTAGTAATG+TGG | + | chr5.4:24941858-24941877 | None:intergenic | 20.0% |
| !!! | ACATATTGATTTTTTTTGGT+AGG | + | chr5.4:24943872-24943891 | None:intergenic | 20.0% |
| !!! | AGTTGACATATTGATTTTTT+TGG | + | chr5.4:24943848-24943867 | None:intergenic | 20.0% |
| !!! | GAGATTTCTTTTAATGTTTA+TGG | - | chr5.4:24941442-24941461 | MS.gene43904:intron | 20.0% |
| !!! | GTTGACATATTGATTTTTTT+GGG | + | chr5.4:24943847-24943866 | None:intergenic | 20.0% |
| !!! | GTTGACATATTGATTTTTTT+TGG | + | chr5.4:24943847-24943866 | None:intergenic | 20.0% |
| ! | ACAAAATTATCCTTCGTTAA+TGG | + | chr5.4:24943636-24943655 | None:intergenic | 25.0% |
| ! | AGCTTAATTATTTATACTGC+AGG | + | chr5.4:24943187-24943206 | None:intergenic | 25.0% |
| ! | CAAATATAAGGCTTATCTTT+CGG | + | chr5.4:24941499-24941518 | None:intergenic | 25.0% |
| ! | GACCAAAATGACTAATAATT+TGG | + | chr5.4:24943270-24943289 | None:intergenic | 25.0% |
| ! | GACCAATATAATACATATTC+TGG | - | chr5.4:24942533-24942552 | MS.gene43904:intron | 25.0% |
| ! | GAGCTTATGTAAATAGTTTA+TGG | - | chr5.4:24942709-24942728 | MS.gene43904:intron | 25.0% |
| ! | GTCAAAACGACTTATAATTT+GGG | - | chr5.4:24943721-24943740 | MS.gene43904:intron | 25.0% |
| ! | TAAATAGTTTACGGTATAGT+AGG | - | chr5.4:24943412-24943431 | MS.gene43904:intron | 25.0% |
| ! | TAATGAGTTAGATCGAAATA+GGG | - | chr5.4:24942024-24942043 | MS.gene43904:intron | 25.0% |
| ! | TCCCAGAATATGTATTATAT+TGG | + | chr5.4:24942538-24942557 | None:intergenic | 25.0% |
| ! | TGAAACAGTATTTGATTGAA+CGG | - | chr5.4:24941317-24941336 | MS.gene43904:CDS | 25.0% |
| ! | TGACATAGTAAATGAATATG+TGG | + | chr5.4:24942255-24942274 | None:intergenic | 25.0% |
| ! | TTAATGAGTTAGATCGAAAT+AGG | - | chr5.4:24942023-24942042 | MS.gene43904:intron | 25.0% |
| ! | TTATCAGAGAAATAAGTTCA+GGG | + | chr5.4:24942479-24942498 | None:intergenic | 25.0% |
| ! | TTTATCAGAGAAATAAGTTC+AGG | + | chr5.4:24942480-24942499 | None:intergenic | 25.0% |
| !! | AGCTTAAAACAAGTTGAAAT+TGG | + | chr5.4:24942747-24942766 | None:intergenic | 25.0% |
| !! | GAGAGTACATTATTACAATT+TGG | + | chr5.4:24943233-24943252 | None:intergenic | 25.0% |
| !! | GCTTTTGTATACATGTTAAA+TGG | + | chr5.4:24944354-24944373 | None:intergenic | 25.0% |
| !! | TAAGCCTTATATTTGTAACA+TGG | - | chr5.4:24941504-24941523 | MS.gene43904:intron | 25.0% |
| !! | TACAATTTGGAATTCATTGA+TGG | + | chr5.4:24943220-24943239 | None:intergenic | 25.0% |
| !! | TCCCAAATTATTAGTCATTT+TGG | - | chr5.4:24943265-24943284 | MS.gene43904:intron | 25.0% |
| !! | TTGCATTTGTTGGATTAATT+TGG | - | chr5.4:24941582-24941601 | MS.gene43904:intron | 25.0% |
| !!! | AGGTTAAGTAGGATATTTTT+TGG | - | chr5.4:24943001-24943020 | MS.gene43904:intron | 25.0% |
| !!! | AGTTGATTTGAAGAATCAAT+AGG | - | chr5.4:24941647-24941666 | MS.gene43904:intron | 25.0% |
| !!! | GAAAGTATTTAACACTAACA+AGG | + | chr5.4:24943044-24943063 | None:intergenic | 25.0% |
| !!! | GGTTAAGTAGGATATTTTTT+GGG | - | chr5.4:24943002-24943021 | MS.gene43904:intron | 25.0% |
| !!! | GTTGATTTGAAGAATCAATA+GGG | - | chr5.4:24941648-24941667 | MS.gene43904:intron | 25.0% |
| !!! | TAATTTTTTACTCTTCTGCT+AGG | - | chr5.4:24942981-24943000 | MS.gene43904:intron | 25.0% |
| !!! | TTTTTTTTACCTTTTTCCTG+TGG | - | chr5.4:24943994-24944013 | MS.gene43904:intron | 25.0% |
| AAACGACTTATAATTTGGGA+CGG | - | chr5.4:24943725-24943744 | MS.gene43904:intron | 30.0% | |
| AACACCTTAATATACCCTTT+CGG | + | chr5.4:24941286-24941305 | None:intergenic | 30.0% | |
| AAGCTAGAACTATTAGAAGT+GGG | - | chr5.4:24942927-24942946 | MS.gene43904:intron | 30.0% | |
| AAGGAAAGTAAGTCAAATAG+AGG | - | chr5.4:24941946-24941965 | MS.gene43904:intron | 30.0% | |
| AAGTAAGTCAAATAGAGGAT+AGG | - | chr5.4:24941951-24941970 | MS.gene43904:intron | 30.0% | |
| ACAACATTACACATGCTTTA+AGG | - | chr5.4:24941553-24941572 | MS.gene43904:intron | 30.0% | |
| ACAGCCATGTTACAAATATA+AGG | + | chr5.4:24941511-24941530 | None:intergenic | 30.0% | |
| AGATACTTGAGCTTATCTAT+TGG | - | chr5.4:24942656-24942675 | MS.gene43904:intron | 30.0% | |
| ATAGTTTATGGCATGTCTAT+AGG | - | chr5.4:24942721-24942740 | MS.gene43904:intron | 30.0% | |
| ATGCATTTCATGTCAACATT+AGG | - | chr5.4:24942132-24942151 | MS.gene43904:intron | 30.0% | |
| ATTGGGAGGACTAATTAAAA+TGG | - | chr5.4:24941691-24941710 | MS.gene43904:intron | 30.0% | |
| CATTCAAACTAGAGTGAATA+GGG | + | chr5.4:24942411-24942430 | None:intergenic | 30.0% | |
| CATTTAACATGCAATGTCAT+AGG | + | chr5.4:24941811-24941830 | None:intergenic | 30.0% | |
| CTCAAAGCGACTTATAATTT+GGG | - | chr5.4:24943777-24943796 | MS.gene43904:intron | 30.0% | |
| GGTCAAAACGACTTATAATT+TGG | - | chr5.4:24943720-24943739 | MS.gene43904:intron | 30.0% | |
| GTTAGAATCCAATTACATTC+AGG | + | chr5.4:24944205-24944224 | None:intergenic | 30.0% | |
| TAACTGTAGAAGTTATGAGA+GGG | - | chr5.4:24942284-24942303 | MS.gene43904:intron | 30.0% | |
| TAAGCTAGAACTATTAGAAG+TGG | - | chr5.4:24942926-24942945 | MS.gene43904:intron | 30.0% | |
| TCATTCAAACTAGAGTGAAT+AGG | + | chr5.4:24942412-24942431 | None:intergenic | 30.0% | |
| TCTCAAAGCGACTTATAATT+TGG | - | chr5.4:24943776-24943795 | MS.gene43904:intron | 30.0% | |
| TGAAGAATCAATAGGGAAAT+TGG | - | chr5.4:24941655-24941674 | MS.gene43904:intron | 30.0% | |
| TGCATTTCATGTCAACATTA+GGG | - | chr5.4:24942133-24942152 | MS.gene43904:intron | 30.0% | |
| TTAATATCAAAGAGGAAACG+TGG | + | chr5.4:24942823-24942842 | None:intergenic | 30.0% | |
| ! | ACTTTGATTGCGTTTTATAG+AGG | - | chr5.4:24941364-24941383 | MS.gene43904:CDS | 30.0% |
| ! | CTGTTGATAAATCTCTTAGA+AGG | - | chr5.4:24941527-24941546 | MS.gene43904:intron | 30.0% |
| ! | CTTTTCAATACCATTAACGA+AGG | - | chr5.4:24943623-24943642 | MS.gene43904:intron | 30.0% |
| ! | GACATGTGAATTTTGTAGTA+AGG | - | chr5.4:24941927-24941946 | MS.gene43904:intron | 30.0% |
| ! | GTTTTACACCTGAATGTAAT+TGG | - | chr5.4:24944194-24944213 | MS.gene43904:CDS | 30.0% |
| ! | TAAAAGTTCAAGTTCAAGCA+AGG | + | chr5.4:24943077-24943096 | None:intergenic | 30.0% |
| !! | ATTGGTGTTTGACTTGATAT+TGG | - | chr5.4:24941673-24941692 | MS.gene43904:intron | 30.0% |
| !! | CTTTTTCATACCGTTAATGA+AGG | + | chr5.4:24943363-24943382 | None:intergenic | 30.0% |
| !! | TTGGTGTTTGACTTGATATT+GGG | - | chr5.4:24941674-24941693 | MS.gene43904:intron | 30.0% |
| AACAGTATTTGATTGAACGG+AGG | - | chr5.4:24941320-24941339 | MS.gene43904:CDS | 35.0% | |
| AAGCGACTTATAATTTGGGA+CGG | + | chr5.4:24943800-24943781 | None:intergenic | 35.0% | |
| AAGCGACTTATAATTTGGGA+TGG | - | chr5.4:24943781-24943800 | MS.gene43904:intron | 35.0% | |
| AATCGATGATGTTTCCGAAA+GGG | - | chr5.4:24941269-24941288 | MS.gene43904:CDS | 35.0% | |
| ACTATTAGAAGTGGGTGAAA+AGG | - | chr5.4:24942935-24942954 | MS.gene43904:intron | 35.0% | |
| AGCATCCAAGATTAAGATTG+AGG | - | chr5.4:24944071-24944090 | MS.gene43904:intron | 35.0% | |
| ATATAAGGCTTATCTTTCGG+CGG | + | chr5.4:24941496-24941515 | None:intergenic | 35.0% | |
| ATGCAAGCCATTAGAATTTC+AGG | + | chr5.4:24944118-24944137 | None:intergenic | 35.0% | |
| ATTAGGGCTATTATCACTTC+AGG | - | chr5.4:24942149-24942168 | MS.gene43904:intron | 35.0% | |
| ATTGGTCAAATTTGTCCTCA+TGG | + | chr5.4:24942520-24942539 | None:intergenic | 35.0% | |
| CATGTTCAATTTAATCCCCA+TGG | - | chr5.4:24942209-24942228 | MS.gene43904:intron | 35.0% | |
| CTAACTGTAGAAGTTATGAG+AGG | - | chr5.4:24942283-24942302 | MS.gene43904:intron | 35.0% | |
| CTATTAGAAGTGGGTGAAAA+GGG | - | chr5.4:24942936-24942955 | MS.gene43904:intron | 35.0% | |
| GCACGTTAAATTCATGCATT+TGG | - | chr5.4:24941878-24941897 | MS.gene43904:intron | 35.0% | |
| GGTTACCTCAATCTTAATCT+TGG | + | chr5.4:24944079-24944098 | None:intergenic | 35.0% | |
| TCAGGAGGAGAATATATCTT+TGG | + | chr5.4:24944100-24944119 | None:intergenic | 35.0% | |
| TCCCAAATTATAAGTCGCTT+CGG | - | chr5.4:24943486-24943505 | MS.gene43904:intron | 35.0% | |
| TCGTAACGAGTTAGTCAAAA+TGG | + | chr5.4:24942311-24942330 | None:intergenic | 35.0% | |
| TGAACATGTGATCTTACATG+TGG | - | chr5.4:24941829-24941848 | MS.gene43904:intron | 35.0% | |
| TGTGGCTAAATGCATATTCA+GGG | - | chr5.4:24942566-24942585 | MS.gene43904:intron | 35.0% | |
| TTACACATCTATATACGCTC+CGG | + | chr5.4:24942909-24942928 | None:intergenic | 35.0% | |
| TTCTCCTCCTGAAATTCTAA+TGG | - | chr5.4:24944108-24944127 | MS.gene43904:intron | 35.0% | |
| ! | GACTTATAATTTGGGATGGA+GGG | - | chr5.4:24943785-24943804 | MS.gene43904:intron | 35.0% |
| ! | GTTTCCGAAAGGGTATATTA+AGG | - | chr5.4:24941279-24941298 | MS.gene43904:CDS | 35.0% |
| !! | AAGGCTTGATTTGCATTTGT+TGG | - | chr5.4:24941572-24941591 | MS.gene43904:intron | 35.0% |
| !! | TATTCTGGGACTAATTTGTG+TGG | - | chr5.4:24942548-24942567 | MS.gene43904:intron | 35.0% |
| !!! | CAACTTGTTTTAAGCTCTCA+AGG | - | chr5.4:24942751-24942770 | MS.gene43904:intron | 35.0% |
| !!! | TTGTTTTAAGCTCTCAAGGA+TGG | - | chr5.4:24942755-24942774 | MS.gene43904:intron | 35.0% |
| ACTCAAAGAAAGTAGACCAC+AGG | + | chr5.4:24944013-24944032 | None:intergenic | 40.0% | |
| ACTCTTCTGCTAGGTTAAGT+AGG | - | chr5.4:24942990-24943009 | MS.gene43904:intron | 40.0% | |
| ATTTCTCGGATGAGTTCATC+AGG | - | chr5.4:24944291-24944310 | MS.gene43904:CDS | 40.0% | |
| CAAGCCATTAGAATTTCAGG+AGG | + | chr5.4:24944115-24944134 | None:intergenic | 40.0% | |
| CAATTTAATCCCCATGGTGT+AGG | - | chr5.4:24942215-24942234 | MS.gene43904:intron | 40.0% | |
| CATTGGATGGCATCTTCTAA+AGG | - | chr5.4:24944254-24944273 | MS.gene43904:CDS | 40.0% | |
| CCCAAATTATAAGTCGCTTC+GGG | - | chr5.4:24943487-24943506 | MS.gene43904:intron | 40.0% | |
| CCCGAAGCGACTTATAATTT+GGG | + | chr5.4:24943490-24943509 | None:intergenic | 40.0% | |
| CTTTGAGTCAATGCATGCTA+TGG | - | chr5.4:24944025-24944044 | MS.gene43904:intron | 40.0% | |
| GAAAGTAGACCACAGGAAAA+AGG | + | chr5.4:24944006-24944025 | None:intergenic | 40.0% | |
| GAATCGATGATGTTTCCGAA+AGG | - | chr5.4:24941268-24941287 | MS.gene43904:CDS | 40.0% | |
| GTGGCTAAATGCATATTCAG+GGG | - | chr5.4:24942567-24942586 | MS.gene43904:intron | 40.0% | |
| GTGTGGCTAAATGCATATTC+AGG | - | chr5.4:24942565-24942584 | MS.gene43904:intron | 40.0% | |
| GTTGTTTATTCAAACCCTCC+CGG | - | chr5.4:24942887-24942906 | MS.gene43904:intron | 40.0% | |
| TACACATCTATATACGCTCC+GGG | + | chr5.4:24942908-24942927 | None:intergenic | 40.0% | |
| TCACAAACCAATTCACGTGT+AGG | + | chr5.4:24942633-24942652 | None:intergenic | 40.0% | |
| TCCCGAAGCGACTTATAATT+TGG | + | chr5.4:24943491-24943510 | None:intergenic | 40.0% | |
| TGAAGAAGAGGAAATGCAGT+TGG | - | chr5.4:24941408-24941427 | MS.gene43904:CDS | 40.0% | |
| ! | ACTTTTAGCACAGACAGAGT+AGG | - | chr5.4:24943090-24943109 | MS.gene43904:intron | 40.0% |
| ! | ATTGCGTTTTATAGAGGCAG+TGG | - | chr5.4:24941370-24941389 | MS.gene43904:CDS | 40.0% |
| ! | CGACTTATAATTTGGGATGG+AGG | - | chr5.4:24943784-24943803 | MS.gene43904:intron | 40.0% |
| ! | CTTTTAGCACAGACAGAGTA+GGG | - | chr5.4:24943091-24943110 | MS.gene43904:intron | 40.0% |
| ! | GACTTATAATTTGGGACGGA+GGG | - | chr5.4:24943729-24943748 | MS.gene43904:intron | 40.0% |
| ! | GACTTATAATTTGGGACGGA+GGG | + | chr5.4:24943748-24943729 | None:intergenic | 40.0% |
| ! | TATAGAGGCAGTGGTGTTAA+TGG | - | chr5.4:24941379-24941398 | MS.gene43904:CDS | 40.0% |
| !! | GTGTTTGACTTGATATTGGG+AGG | - | chr5.4:24941677-24941696 | MS.gene43904:intron | 40.0% |
| !! | TAATGGTGATGGTGAAGAAG+AGG | - | chr5.4:24941396-24941415 | MS.gene43904:CDS | 40.0% |
| !! | TAGAAGTGTCAAGAACCATG+AGG | - | chr5.4:24942502-24942521 | MS.gene43904:intron | 40.0% |
| AAGAGGAAATGCAGTTGGCT+GGG | - | chr5.4:24941413-24941432 | MS.gene43904:CDS | 45.0% | |
| CACGTAAATCCTACACCATG+GGG | + | chr5.4:24942227-24942246 | None:intergenic | 45.0% | |
| CCACGTAAATCCTACACCAT+GGG | + | chr5.4:24942228-24942247 | None:intergenic | 45.0% | |
| GCAATCAAAGTCGCCATATG+CGG | + | chr5.4:24941355-24941374 | None:intergenic | 45.0% | |
| GTCAAATAGAGGATAGGCAG+AGG | - | chr5.4:24941957-24941976 | MS.gene43904:intron | 45.0% | |
| TAATTCTACTCTTCCGTCGC+CGG | - | chr5.4:24941468-24941487 | MS.gene43904:intron | 45.0% | |
| TCCACGTAAATCCTACACCA+TGG | + | chr5.4:24942229-24942248 | None:intergenic | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | + | chr5.4:24942093-24942112 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | chr5.4:24942094-24942113 | None:intergenic | 45.0% |
| ! | CAAGCGAGGAACTGATTTCT+CGG | - | chr5.4:24944277-24944296 | MS.gene43904:CDS | 45.0% |
| ! | CGACTTATAATTTGGGACGG+AGG | - | chr5.4:24943728-24943747 | MS.gene43904:intron | 45.0% |
| ! | CGACTTATAATTTGGGACGG+AGG | + | chr5.4:24943747-24943728 | None:intergenic | 45.0% |
| ! | GGACGGAGGGAGTATAATTT+GGG | - | chr5.4:24943742-24943761 | MS.gene43904:intron | 45.0% |
| ! | TCAAGCCTTATCCCACTAAG+TGG | + | chr5.4:24942095-24942114 | None:intergenic | 45.0% |
| !! | TTCTAAGAGTGTCTCCCTTC+AGG | - | chr5.4:24944226-24944245 | MS.gene43904:CDS | 45.0% |
| ACATCTATATACGCTCCGGG+AGG | + | chr5.4:24942905-24942924 | None:intergenic | 50.0% | |
| CATCTATATACGCTCCGGGA+GGG | + | chr5.4:24942904-24942923 | None:intergenic | 50.0% | |
| CCCATGGTGTAGGATTTACG+TGG | - | chr5.4:24942225-24942244 | MS.gene43904:intron | 50.0% | |
| CGCTATTGTGTGCTTGCTTG+CGG | - | chr5.4:24941234-24941253 | MS.gene43904:CDS | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | + | chr5.4:24942089-24942108 | None:intergenic | 50.0% | |
| GAAGAGGAAATGCAGTTGGC+TGG | - | chr5.4:24941412-24941431 | MS.gene43904:CDS | 50.0% | |
| GAGGAGTTTGATGCCGCATA+TGG | - | chr5.4:24941339-24941358 | MS.gene43904:CDS | 50.0% | |
| GCTCTCAACACACTCACAAG+TGG | + | chr5.4:24942693-24942712 | None:intergenic | 50.0% | |
| ! | GCATCTTCTAAAGGCAAGCG+AGG | - | chr5.4:24944263-24944282 | MS.gene43904:CDS | 50.0% |
| ! | GGCAGTGGTGTTAATGGTGA+TGG | - | chr5.4:24941385-24941404 | MS.gene43904:CDS | 50.0% |
| ! | GGGACGGAGGGAGTATAATT+TGG | - | chr5.4:24943741-24943760 | MS.gene43904:intron | 50.0% |
| !! | AAGAGTGTCTCCCTTCAGGA+GGG | - | chr5.4:24944230-24944249 | MS.gene43904:CDS | 50.0% |
| !! | TAAGAGTGTCTCCCTTCAGG+AGG | - | chr5.4:24944229-24944248 | MS.gene43904:CDS | 50.0% |
| ATGTAGCCGACCCCACTTAG+TGG | - | chr5.4:24942080-24942099 | MS.gene43904:intron | 55.0% | |
| CATCCAATGCCCCTCCTGAA+GGG | + | chr5.4:24944243-24944262 | None:intergenic | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | - | chr5.4:24942087-24942106 | MS.gene43904:intron | 55.0% | |
| GCGTCTCTGCAACAACAGCA+GGG | + | chr5.4:24944413-24944432 | None:intergenic | 55.0% | |
| GGCTTATCTTTCGGCGGATC+CGG | + | chr5.4:24941490-24941509 | None:intergenic | 55.0% | |
| GGTTGCGCCTACACGTGAAT+TGG | - | chr5.4:24942623-24942642 | MS.gene43904:intron | 55.0% | |
| TGCGTCTCTGCAACAACAGC+AGG | + | chr5.4:24944414-24944433 | None:intergenic | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | - | chr5.4:24942081-24942100 | MS.gene43904:intron | 55.0% | |
| ! | AGAGTGTCTCCCTTCAGGAG+GGG | - | chr5.4:24944231-24944250 | MS.gene43904:CDS | 55.0% |
| CCATCCAATGCCCCTCCTGA+AGG | + | chr5.4:24944244-24944263 | None:intergenic | 60.0% | |
| ! | TCTCCCTTCAGGAGGGGCAT+TGG | - | chr5.4:24944237-24944256 | MS.gene43904:CDS | 60.0% |
| !! | CCTTCAGGAGGGGCATTGGA+TGG | - | chr5.4:24944241-24944260 | MS.gene43904:CDS | 60.0% |
| TCTTTCGGCGGATCCGGCGA+CGG | + | chr5.4:24941484-24941503 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 24941214 | 24944470 | 24941214 | ID=MS.gene43904 |
| chr5.4 | mRNA | 24941214 | 24944470 | 24941214 | ID=MS.gene43904.t1;Parent=MS.gene43904 |
| chr5.4 | exon | 24944136 | 24944470 | 24944136 | ID=MS.gene43904.t1.exon1;Parent=MS.gene43904.t1 |
| chr5.4 | CDS | 24944136 | 24944470 | 24944136 | ID=cds.MS.gene43904.t1;Parent=MS.gene43904.t1 |
| chr5.4 | exon | 24941214 | 24941436 | 24941214 | ID=MS.gene43904.t1.exon2;Parent=MS.gene43904.t1 |
| chr5.4 | CDS | 24941214 | 24941436 | 24941214 | ID=cds.MS.gene43904.t1;Parent=MS.gene43904.t1 |
| Gene Sequence |
| Protein sequence |
