AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene44026

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene44026.t1 MTR_1g081560 91.534 378 29 2 1 378 1 375 0.0 633
MS.gene44026.t1 MTR_1g081580 32.931 331 178 11 83 374 45 370 1.11e-40 148
MS.gene44026.t1 MTR_7g114600 44.444 171 76 7 74 231 42 206 4.53e-28 114
MS.gene44026.t1 MTR_7g114600 38.793 116 48 5 279 375 323 434 3.77e-12 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene44026.t1 AT5G28040 34.605 367 154 16 79 375 72 422 9.59e-44 157
MS.gene44026.t1 AT5G28040 34.605 367 154 16 79 375 72 422 9.59e-44 157
MS.gene44026.t1 AT3G04930 38.037 163 82 5 79 229 78 233 1.76e-26 109
MS.gene44026.t1 AT3G04930 38.037 163 82 5 79 229 78 233 3.96e-26 109
MS.gene44026.t1 AT1G11510 35.606 132 69 4 110 231 105 230 3.69e-13 70.5
MS.gene44026.t1 AT1G11510 39.394 99 53 2 134 231 109 201 4.99e-13 69.7

Find 94 sgRNAs with CRISPR-Local

Find 105 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGAATTCCACGCTGAATT+TGG 0.141013 1.3:+57566795 None:intergenic
TCGAAATTTCCCACAAGATT+TGG 0.203495 1.3:-57566660 MS.gene44026:CDS
CGAAATTTCCCACAAGATTT+GGG 0.213735 1.3:-57566659 MS.gene44026:CDS
TGCTTTCACCGTTGGTTTCT+TGG 0.230429 1.3:-57567323 MS.gene44026:CDS
CTTGTGGGAAATTTCGAAAA+TGG 0.256771 1.3:+57566666 None:intergenic
AGAAGTTACGTAGGTTAAAA+AGG 0.283260 1.3:-57566756 MS.gene44026:CDS
TCAATAAGATCAGGACTTTC+AGG 0.284560 1.3:+57566586 None:intergenic
ACCATTGTTGAAGGAACTAT+TGG 0.296222 1.3:-57566389 MS.gene44026:CDS
TGAACTGTTGAAGGGATATC+TGG 0.305389 1.3:-57566893 MS.gene44026:CDS
ATGGTTAAAACGGAGGATTT+TGG 0.338805 1.3:-57566296 MS.gene44026:CDS
TGACACCGACCATGATGTTT+TGG 0.353127 1.3:-57566632 MS.gene44026:CDS
ATTGTGAAGAAACAGATAAA+AGG 0.357039 1.3:-57566531 MS.gene44026:CDS
TGGTCTTCATCCACATTGTA+TGG 0.361996 1.3:+57567132 None:intergenic
TTGAATTCCACGCTGAATTT+GGG 0.366580 1.3:+57566796 None:intergenic
GCCATGGCCACCGTCACAAC+GGG 0.369780 1.3:+57567066 None:intergenic
GACGCACTGGGTGGCTCTAC+TGG 0.372415 1.3:+57566358 None:intergenic
CTCAACAATGCTTTCACCGT+TGG 0.385469 1.3:-57567331 None:intergenic
CATTGTATGGACATAGAAAA+TGG 0.389529 1.3:+57567145 None:intergenic
TGGTGAGAAACAAGACTTCA+TGG 0.394662 1.3:+57566408 None:intergenic
CGTCATCCACATTGTCCATT+TGG 0.406227 1.3:+57567178 None:intergenic
GCCGTGTTTGTGTCATCTGC+GGG 0.417687 1.3:+57567039 None:intergenic
TAGTAGCATTGCCATTGTTC+CGG 0.431642 1.3:+57566455 None:intergenic
TGAGGGATCTTGAAAGAAAT+CGG 0.433564 1.3:+57566697 None:intergenic
TTGTTTCTCACCATTGTTGA+AGG 0.439029 1.3:-57566398 MS.gene44026:CDS
TAACAACATCGGCGACGCAC+TGG 0.453222 1.3:+57566345 None:intergenic
AGATCAGGACTTTCAGGAAC+AGG 0.454735 1.3:+57566592 None:intergenic
CAATGGGAATGTTGTCCATT+TGG 0.457011 1.3:+57567112 None:intergenic
CCCCGTTGTGACGGTGGCCA+TGG 0.457760 1.3:-57567067 MS.gene44026:CDS
TCGCCGATGTTGTTATCGAC+AGG 0.458917 1.3:-57566337 MS.gene44026:CDS
TGACAATGTTGAAGACCAAA+TGG 0.469140 1.3:-57567193 MS.gene44026:CDS
AATTCAGCGTGGAATTCAAC+AGG 0.472407 1.3:-57566792 MS.gene44026:CDS
TATTGACAATGTTAAGATGA+AGG 0.472539 1.3:-57566569 MS.gene44026:CDS
TCAGAAACGGCAAGTGCAAT+GGG 0.486716 1.3:+57567096 None:intergenic
GGACGAGATTGAACTGTTGA+AGG 0.488252 1.3:-57566902 MS.gene44026:CDS
TTGTGAAGAAACAGATAAAA+GGG 0.492865 1.3:-57566530 MS.gene44026:CDS
AAGGAAACACAAGATGACTT+TGG 0.497734 1.3:-57566737 MS.gene44026:CDS
CAATGTGGATGAAGACCAAA+TGG 0.497943 1.3:-57567127 MS.gene44026:CDS
ATCAGAAACGGCAAGTGCAA+TGG 0.502613 1.3:+57567095 None:intergenic
GGCAACAAACACAGCCACCA+CGG 0.507088 1.3:-57567019 MS.gene44026:CDS
TTAAACAATATCAGAGGCTA+TGG 0.508336 1.3:-57566933 MS.gene44026:CDS
TCAGATCAAGGCTAGGTTGG+AGG 0.516669 1.3:-57566233 MS.gene44026:CDS
TCGAAAATGGCTTGTTCCTG+AGG 0.518443 1.3:+57566679 None:intergenic
TTAACATTGTCAATAAGATC+AGG 0.519347 1.3:+57566577 None:intergenic
GGAGGTGTATTTGAATCGGT+TGG 0.520311 1.3:-57566269 MS.gene44026:CDS
CAATGTGGATGACGACGAAA+AGG 0.522816 1.3:-57567169 MS.gene44026:CDS
GTCATTGCCCCAAATCTTGT+GGG 0.523632 1.3:+57566651 None:intergenic
AACTGGAGGTGTATTTGAAT+CGG 0.526700 1.3:-57566273 MS.gene44026:CDS
CGAAAATGGCTTGTTCCTGA+GGG 0.533678 1.3:+57566680 None:intergenic
GATTTCTTTCAAGATCCCTC+AGG 0.542535 1.3:-57566695 MS.gene44026:CDS
TGTCATTGCCCCAAATCTTG+TGG 0.546121 1.3:+57566650 None:intergenic
AATCGGTTGGAGTTGTTGCA+AGG 0.547050 1.3:-57566256 MS.gene44026:CDS
AACAACATCGGCGACGCACT+GGG 0.551267 1.3:+57566346 None:intergenic
TCCAATAGTTCCTTCAACAA+TGG 0.555130 1.3:+57566388 None:intergenic
ATGGCAATGCTACTAGCATA+CGG 0.556871 1.3:-57566447 MS.gene44026:CDS
CATCAACTTCCAAAACATCA+TGG 0.562896 1.3:+57566623 None:intergenic
TGGCAATGCTACTAGCATAC+GGG 0.563532 1.3:-57566446 MS.gene44026:CDS
GGGATGAACAATGGTTAAAA+CGG 0.566430 1.3:-57566306 MS.gene44026:CDS
CGCCGATGTTGTTATCGACA+GGG 0.567511 1.3:-57566336 MS.gene44026:CDS
CTGGATTACATTAAACAGCA+TGG 0.577356 1.3:-57566874 MS.gene44026:CDS
TGCCGTGTTTGTGTCATCTG+CGG 0.578987 1.3:+57567038 None:intergenic
AGCCATGGCCACCGTCACAA+CGG 0.580091 1.3:+57567065 None:intergenic
GACTTTGGACAAAGGCAAAG+AGG 0.584181 1.3:-57566722 MS.gene44026:CDS
TACGTAACTTCTCAACAAGC+TGG 0.586441 1.3:+57566767 None:intergenic
GTTGTTGCAAGGTCAGATCA+AGG 0.586461 1.3:-57566245 MS.gene44026:CDS
TCAGAGGCTATGGACAAAGC+AGG 0.591463 1.3:-57566923 MS.gene44026:CDS
AGGTCAGATCAAGGCTAGGT+TGG 0.595411 1.3:-57566236 MS.gene44026:CDS
TGTTATCGACAGGGGAAGTG+AGG 0.599112 1.3:-57566327 MS.gene44026:CDS
TTCTTCTTCGGATGACGAAG+AGG 0.605501 1.3:+57567278 None:intergenic
GAAATTTCCCACAAGATTTG+GGG 0.610345 1.3:-57566658 MS.gene44026:CDS
GTTATCGACAGGGGAAGTGA+GGG 0.615083 1.3:-57566326 MS.gene44026:CDS
CCCCGCAGATGACACAAACA+CGG 0.617705 1.3:-57567040 MS.gene44026:CDS
AACTTCCAAAACATCATGGT+CGG 0.617899 1.3:+57566627 None:intergenic
GACGAGATTGAACTGTTGAA+GGG 0.620700 1.3:-57566901 MS.gene44026:CDS
CACAAGATGACTTTGGACAA+AGG 0.621465 1.3:-57566730 MS.gene44026:CDS
CGTGTTTGTGTCATCTGCGG+GGG 0.627292 1.3:+57567041 None:intergenic
CCGTGTTTGTGTCATCTGCG+GGG 0.639190 1.3:+57567040 None:intergenic
GACAAAATCCAAGAAACCAA+CGG 0.648479 1.3:+57567315 None:intergenic
TGCAAGGTCAGATCAAGGCT+AGG 0.648837 1.3:-57566240 MS.gene44026:CDS
GGCAATGCTACTAGCATACG+GGG 0.651150 1.3:-57566445 MS.gene44026:CDS
AGTGGTAGTAGCCGCCGTGG+TGG 0.664341 1.3:+57567005 None:intergenic
GCCGATGTTGTTATCGACAG+GGG 0.669203 1.3:-57566335 MS.gene44026:CDS
ATGAACAATGGTTAAAACGG+AGG 0.670080 1.3:-57566303 MS.gene44026:CDS
GGGAAGTGAGGGATGAACAA+TGG 0.671370 1.3:-57566315 MS.gene44026:CDS
CATGGCCACCGTCACAACGG+GGG 0.676320 1.3:+57567068 None:intergenic
CCATGGCCACCGTCACAACG+GGG 0.678792 1.3:+57567067 None:intergenic
TCCCCTGTCGATAACAACAT+CGG 0.682290 1.3:+57566334 None:intergenic
ACGGCGTTAAACAATATCAG+AGG 0.682928 1.3:-57566939 MS.gene44026:CDS
GCAAATACTACTATTCAAAG+CGG 0.683552 1.3:-57566847 MS.gene44026:CDS
AGTTATTCCCAAATTCAGCG+TGG 0.688982 1.3:-57566803 MS.gene44026:CDS
TATAGTGGTAGTAGCCGCCG+TGG 0.689187 1.3:+57567002 None:intergenic
TGAAGACCAAATGGACAATG+TGG 0.693003 1.3:-57567184 MS.gene44026:CDS
AACATCGGCGACGCACTGGG+TGG 0.698538 1.3:+57566349 None:intergenic
AACAAACACAGCCACCACGG+CGG 0.720153 1.3:-57567016 MS.gene44026:CDS
AGCTTGTTGAGAAGTTACGT+AGG 0.729557 1.3:-57566765 MS.gene44026:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATAACAAAAAGTATTCAGA+CGG - chr1.3:57566576-57566595 MS.gene44026:CDS 20.0%
! ATTGTGAAGAAACAGATAAA+AGG - chr1.3:57567003-57567022 MS.gene44026:CDS 25.0%
! TATTGACAATGTTAAGATGA+AGG - chr1.3:57566965-57566984 MS.gene44026:CDS 25.0%
! TTAACATTGTCAATAAGATC+AGG + chr1.3:57566960-57566979 None:intergenic 25.0%
! TTGTGAAGAAACAGATAAAA+GGG - chr1.3:57567004-57567023 MS.gene44026:CDS 25.0%
AGAAGTTACGTAGGTTAAAA+AGG - chr1.3:57566778-57566797 MS.gene44026:CDS 30.0%
CATTGTATGGACATAGAAAA+TGG + chr1.3:57566392-57566411 None:intergenic 30.0%
GCAAATACTACTATTCAAAG+CGG - chr1.3:57566687-57566706 MS.gene44026:CDS 30.0%
TTAAACAATATCAGAGGCTA+TGG - chr1.3:57566601-57566620 MS.gene44026:CDS 30.0%
TTCTTCTTCTTCTTCTTCTT+CGG + chr1.3:57566271-57566290 None:intergenic 30.0%
! TTTTCTATGTCCATACAATG+TGG - chr1.3:57566392-57566411 MS.gene44026:CDS 30.0%
AACTTCCAAAACATCATGGT+CGG + chr1.3:57566910-57566929 None:intergenic 35.0%
AAGGAAACACAAGATGACTT+TGG - chr1.3:57566797-57566816 MS.gene44026:CDS 35.0%
ACAAAAAATGACCGGAACAA+TGG - chr1.3:57567068-57567087 MS.gene44026:CDS 35.0%
ACCATTGTTGAAGGAACTAT+TGG - chr1.3:57567145-57567164 MS.gene44026:CDS 35.0%
ACGTGAACACAAAAAATGAC+CGG - chr1.3:57567060-57567079 MS.gene44026:CDS 35.0%
ATGAACAATGGTTAAAACGG+AGG - chr1.3:57567231-57567250 MS.gene44026:CDS 35.0%
CATCAACTTCCAAAACATCA+TGG + chr1.3:57566914-57566933 None:intergenic 35.0%
CGAAATTTCCCACAAGATTT+GGG - chr1.3:57566875-57566894 MS.gene44026:CDS 35.0%
CTGGATTACATTAAACAGCA+TGG - chr1.3:57566660-57566679 MS.gene44026:CDS 35.0%
CTTGTGGGAAATTTCGAAAA+TGG + chr1.3:57566871-57566890 None:intergenic 35.0%
GAAATTTCCCACAAGATTTG+GGG - chr1.3:57566876-57566895 MS.gene44026:CDS 35.0%
GACAAAATCCAAGAAACCAA+CGG + chr1.3:57566222-57566241 None:intergenic 35.0%
GGGATGAACAATGGTTAAAA+CGG - chr1.3:57567228-57567247 MS.gene44026:CDS 35.0%
TCAATAAGATCAGGACTTTC+AGG + chr1.3:57566951-57566970 None:intergenic 35.0%
TCCAATAGTTCCTTCAACAA+TGG + chr1.3:57567149-57567168 None:intergenic 35.0%
TCGAAATTTCCCACAAGATT+TGG - chr1.3:57566874-57566893 MS.gene44026:CDS 35.0%
TGACAATGTTGAAGACCAAA+TGG - chr1.3:57566341-57566360 MS.gene44026:CDS 35.0%
TGAGGGATCTTGAAAGAAAT+CGG + chr1.3:57566840-57566859 None:intergenic 35.0%
TTGAATTCCACGCTGAATTT+GGG + chr1.3:57566741-57566760 None:intergenic 35.0%
! AACTGGAGGTGTATTTGAAT+CGG - chr1.3:57567261-57567280 MS.gene44026:CDS 35.0%
! ATGGTTAAAACGGAGGATTT+TGG - chr1.3:57567238-57567257 MS.gene44026:CDS 35.0%
! TTGTTTCTCACCATTGTTGA+AGG - chr1.3:57567136-57567155 MS.gene44026:CDS 35.0%
!! TTTTGAGCGTGTTGTTATAG+TGG + chr1.3:57566550-57566569 None:intergenic 35.0%
AATTCAGCGTGGAATTCAAC+AGG - chr1.3:57566742-57566761 MS.gene44026:CDS 40.0%
ACGGCGTTAAACAATATCAG+AGG - chr1.3:57566595-57566614 MS.gene44026:CDS 40.0%
AGTTATTCCCAAATTCAGCG+TGG - chr1.3:57566731-57566750 MS.gene44026:CDS 40.0%
ATGGCAATGCTACTAGCATA+CGG - chr1.3:57567087-57567106 MS.gene44026:CDS 40.0%
CAATGGGAATGTTGTCCATT+TGG + chr1.3:57566425-57566444 None:intergenic 40.0%
CAATGTGGATGAAGACCAAA+TGG - chr1.3:57566407-57566426 MS.gene44026:CDS 40.0%
CACAAGATGACTTTGGACAA+AGG - chr1.3:57566804-57566823 MS.gene44026:CDS 40.0%
GACGAGATTGAACTGTTGAA+GGG - chr1.3:57566633-57566652 MS.gene44026:CDS 40.0%
GATTTCTTTCAAGATCCCTC+AGG - chr1.3:57566839-57566858 MS.gene44026:CDS 40.0%
GTTGAATTCCACGCTGAATT+TGG + chr1.3:57566742-57566761 None:intergenic 40.0%
TACGTAACTTCTCAACAAGC+TGG + chr1.3:57566770-57566789 None:intergenic 40.0%
TAGTAGCATTGCCATTGTTC+CGG + chr1.3:57567082-57567101 None:intergenic 40.0%
TGAACTGTTGAAGGGATATC+TGG - chr1.3:57566641-57566660 MS.gene44026:CDS 40.0%
TGAAGACCAAATGGACAATG+TGG - chr1.3:57566350-57566369 MS.gene44026:CDS 40.0%
TGGTCTTCATCCACATTGTA+TGG + chr1.3:57566405-57566424 None:intergenic 40.0%
TGGTGAGAAACAAGACTTCA+TGG + chr1.3:57567129-57567148 None:intergenic 40.0%
!! AGCTTGTTGAGAAGTTACGT+AGG - chr1.3:57566769-57566788 MS.gene44026:CDS 40.0%
!!! AAAACGGAGGATTTTGGAAC+TGG - chr1.3:57567244-57567263 MS.gene44026:CDS 40.0%
AATCGGTTGGAGTTGTTGCA+AGG - chr1.3:57567278-57567297 MS.gene44026:CDS 45.0%
AGATCAGGACTTTCAGGAAC+AGG + chr1.3:57566945-57566964 None:intergenic 45.0%
ATCAGAAACGGCAAGTGCAA+TGG + chr1.3:57566442-57566461 None:intergenic 45.0%
CAATGTGGATGACGACGAAA+AGG - chr1.3:57566365-57566384 MS.gene44026:CDS 45.0%
CGTCATCCACATTGTCCATT+TGG + chr1.3:57566359-57566378 None:intergenic 45.0%
GACTTTGGACAAAGGCAAAG+AGG - chr1.3:57566812-57566831 MS.gene44026:CDS 45.0%
GGACGAGATTGAACTGTTGA+AGG - chr1.3:57566632-57566651 MS.gene44026:CDS 45.0%
GTCATTGCCCCAAATCTTGT+GGG + chr1.3:57566886-57566905 None:intergenic 45.0%
GTTGTTGCAAGGTCAGATCA+AGG - chr1.3:57567289-57567308 MS.gene44026:CDS 45.0%
TCAGAAACGGCAAGTGCAAT+GGG + chr1.3:57566441-57566460 None:intergenic 45.0%
TCCCCTGTCGATAACAACAT+CGG + chr1.3:57567203-57567222 None:intergenic 45.0%
TGGCAATGCTACTAGCATAC+GGG - chr1.3:57567088-57567107 MS.gene44026:CDS 45.0%
TGTCATTGCCCCAAATCTTG+TGG + chr1.3:57566887-57566906 None:intergenic 45.0%
TTCTTCTTCGGATGACGAAG+AGG + chr1.3:57566259-57566278 None:intergenic 45.0%
! GGAGGTGTATTTGAATCGGT+TGG - chr1.3:57567265-57567284 MS.gene44026:CDS 45.0%
! TGACACCGACCATGATGTTT+TGG - chr1.3:57566902-57566921 MS.gene44026:CDS 45.0%
!! CGAAAATGGCTTGTTCCTGA+GGG + chr1.3:57566857-57566876 None:intergenic 45.0%
!! TCGAAAATGGCTTGTTCCTG+AGG + chr1.3:57566858-57566877 None:intergenic 45.0%
!! TGCTTTCACCGTTGGTTTCT+TGG - chr1.3:57566211-57566230 MS.gene44026:CDS 45.0%
AACGGGGGATGCATCAGAAA+CGG + chr1.3:57566454-57566473 None:intergenic 50.0%
AGGTCAGATCAAGGCTAGGT+TGG - chr1.3:57567298-57567317 MS.gene44026:CDS 50.0%
CGCCGATGTTGTTATCGACA+GGG - chr1.3:57567198-57567217 MS.gene44026:CDS 50.0%
GCCGATGTTGTTATCGACAG+GGG - chr1.3:57567199-57567218 MS.gene44026:CDS 50.0%
GGCAATGCTACTAGCATACG+GGG - chr1.3:57567089-57567108 MS.gene44026:CDS 50.0%
GGGAAGTGAGGGATGAACAA+TGG - chr1.3:57567219-57567238 MS.gene44026:CDS 50.0%
GTTATCGACAGGGGAAGTGA+GGG - chr1.3:57567208-57567227 MS.gene44026:CDS 50.0%
TCAGAGGCTATGGACAAAGC+AGG - chr1.3:57566611-57566630 MS.gene44026:CDS 50.0%
TCGCCGATGTTGTTATCGAC+AGG - chr1.3:57567197-57567216 MS.gene44026:CDS 50.0%
TGCAAGGTCAGATCAAGGCT+AGG - chr1.3:57567294-57567313 MS.gene44026:CDS 50.0%
TGCCGTGTTTGTGTCATCTG+CGG + chr1.3:57566499-57566518 None:intergenic 50.0%
TGTTATCGACAGGGGAAGTG+AGG - chr1.3:57567207-57567226 MS.gene44026:CDS 50.0%
! TCAGATCAAGGCTAGGTTGG+AGG - chr1.3:57567301-57567320 MS.gene44026:CDS 50.0%
!!! ACGGAGGATTTTGGAACTGG+AGG - chr1.3:57567247-57567266 MS.gene44026:CDS 50.0%
AACAAACACAGCCACCACGG+CGG - chr1.3:57566518-57566537 MS.gene44026:CDS 55.0%
AACAACATCGGCGACGCACT+GGG + chr1.3:57567191-57567210 None:intergenic 55.0%
CCCCGCAGATGACACAAACA+CGG - chr1.3:57566494-57566513 MS.gene44026:CDS 55.0%
CCGTGTTTGTGTCATCTGCG+GGG + chr1.3:57566497-57566516 None:intergenic 55.0%
CGTGTTTGTGTCATCTGCGG+GGG + chr1.3:57566496-57566515 None:intergenic 55.0%
GCCGTGTTTGTGTCATCTGC+GGG + chr1.3:57566498-57566517 None:intergenic 55.0%
GGCAACAAACACAGCCACCA+CGG - chr1.3:57566515-57566534 MS.gene44026:CDS 55.0%
TAACAACATCGGCGACGCAC+TGG + chr1.3:57567192-57567211 None:intergenic 55.0%
TATAGTGGTAGTAGCCGCCG+TGG + chr1.3:57566535-57566554 None:intergenic 55.0%
TGATGCATCCCCCGTTGTGA+CGG - chr1.3:57566458-57566477 MS.gene44026:CDS 55.0%
AGCCATGGCCACCGTCACAA+CGG + chr1.3:57566472-57566491 None:intergenic 60.0%
AACATCGGCGACGCACTGGG+TGG + chr1.3:57567188-57567207 None:intergenic 65.0%
AGTGGTAGTAGCCGCCGTGG+TGG + chr1.3:57566532-57566551 None:intergenic 65.0%
CATGGCCACCGTCACAACGG+GGG + chr1.3:57566469-57566488 None:intergenic 65.0%
CCATGGCCACCGTCACAACG+GGG + chr1.3:57566470-57566489 None:intergenic 65.0%
GCCATGGCCACCGTCACAAC+GGG + chr1.3:57566471-57566490 None:intergenic 65.0%
TGCATCCCCCGTTGTGACGG+TGG - chr1.3:57566461-57566480 MS.gene44026:CDS 65.0%
! GACGCACTGGGTGGCTCTAC+TGG + chr1.3:57567179-57567198 None:intergenic 65.0%
CCCCGTTGTGACGGTGGCCA+TGG - chr1.3:57566467-57566486 MS.gene44026:CDS 70.0%
GTCATCTGCGGGGGCAGCCA+TGG + chr1.3:57566487-57566506 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 57566210 57567346 57566210 ID=MS.gene44026
chr1.3 mRNA 57566210 57567346 57566210 ID=MS.gene44026.t1;Parent=MS.gene44026
chr1.3 exon 57566210 57567346 57566210 ID=MS.gene44026.t1.exon1;Parent=MS.gene44026.t1
chr1.3 CDS 57566210 57567346 57566210 ID=cds.MS.gene44026.t1;Parent=MS.gene44026.t1
Gene Sequence

>MS.gene44026

ATGCTTTCACCGTTGGTTTCTTGGATTTTGTCAACATCATCATCTTCCTCTTCGTCATCCGAAGAAGAAGAAGAAGAAGAAGAAAGTCTTGAGATTAACAATGACGAAGCAGACTGTGAAAACTTTGAAAATGACAATGTTGAAGACCAAATGGACAATGTGGATGACGACGAAAAGGACCATTTTCTATGTCCATACAATGTGGATGAAGACCAAATGGACAACATTCCCATTGCACTTGCCGTTTCTGATGCATCCCCCGTTGTGACGGTGGCCATGGCTGCCCCCGCAGATGACACAAACACGGCAACAAACACAGCCACCACGGCGGCTACTACCACTATAACAACACGCTCAAAACGACAATATAACAAAAAGTATTCAGACGGCGTTAAACAATATCAGAGGCTATGGACAAAGCAGGACGAGATTGAACTGTTGAAGGGATATCTGGATTACATTAAACAGCATGGAAGAGCAAATACTACTATTCAAAGCGGCGTAGCTTCATTCTATGATCAAGTTATTCCCAAATTCAGCGTGGAATTCAACAGGAACCAGCTTGTTGAGAAGTTACGTAGGTTAAAAAGGAAACACAAGATGACTTTGGACAAAGGCAAAGAGGTTCCGATTTCTTTCAAGATCCCTCAGGAACAAGCCATTTTCGAAATTTCCCACAAGATTTGGGGCAATGACACCGACCATGATGTTTTGGAAGTTGATGAATCAAGACCTGTTCCTGAAAGTCCTGATCTTATTGACAATGTTAAGATGAAGGATGAAGATGTTGACAATTGTGAAGAAACAGATAAAAGGGTGCATAAGCGTGTGAAGATAACAACAGATGACGACGTGAACACAAAAAATGACCGGAACAATGGCAATGCTACTAGCATACGGGGCTTCATTGAAGAAACCATGAAGTCTTGTTTCTCACCATTGTTGAAGGAACTATTGGATGATGTTCCAGTAGAGCCACCCAGTGCGTCGCCGATGTTGTTATCGACAGGGGAAGTGAGGGATGAACAATGGTTAAAACGGAGGATTTTGGAACTGGAGGTGTATTTGAATCGGTTGGAGTTGTTGCAAGGTCAGATCAAGGCTAGGTTGGAGGAGTTAAAGTCTAGCTTAGATTGA
Protein sequence

>MS.gene44026.t1

MLSPLVSWILSTSSSSSSSSEEEEEEEESLEINNDEADCENFENDNVEDQMDNVDDDEKDHFLCPYNVDEDQMDNIPIALAVSDASPVVTVAMAAPADDTNTATNTATTAATTTITTRSKRQYNKKYSDGVKQYQRLWTKQDEIELLKGYLDYIKQHGRANTTIQSGVASFYDQVIPKFSVEFNRNQLVEKLRRLKRKHKMTLDKGKEVPISFKIPQEQAIFEISHKIWGNDTDHDVLEVDESRPVPESPDLIDNVKMKDEDVDNCEETDKRVHKRVKITTDDDVNTKNDRNNGNATSIRGFIEETMKSCFSPLLKELLDDVPVEPPSASPMLLSTGEVRDEQWLKRRILELEVYLNRLELLQGQIKARLEELKSSLD