AlfalfaGEDB | MS.gene44126

M. sativa cultivar XinJiangDaYe / MS.gene44126

KEGG: -
GO: GO:0003674 GO:0005488 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44126.t1	PNX73002.1	49.4	799	140	8	54	622	1	765	4.30E-186	661.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44126.t1	Q9SZL8	32.1	221	133	6	54	259	77	295	3.5e-19	98.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44126.t1	A0A2K3L384	49.4	799	140	8	54	622	1	765	3.1e-186	661.4

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene44126.t1	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44126.t1	MTR_0645s0010	97.561	82	2	0	252	333	44	125	1.88e-47	163
MS.gene44126.t1	MTR_7g446520	40.476	210	110	1	43	252	81	275	8.72e-43	157
MS.gene44126.t1	MTR_7g446480	47.287	129	68	0	124	252	140	268	1.31e-31	125
MS.gene44126.t1	MTR_7g446510	45.185	135	74	0	118	252	149	283	2.71e-30	122
MS.gene44126.t1	MTR_7g028855	43.046	151	83	1	43	190	113	263	3.19e-30	124
MS.gene44126.t1	MTR_1g070355	31.641	256	157	6	6	252	31	277	2.14e-27	117
MS.gene44126.t1	MTR_5g076070	28.272	191	131	2	25	209	25	215	1.57e-23	101
MS.gene44126.t1	MTR_4g035820	29.845	258	157	8	8	252	36	282	2.39e-20	95.9
MS.gene44126.t1	MTR_6g022080	27.485	171	121	1	42	209	77	247	8.06e-20	89.7
MS.gene44126.t1	MTR_0402s0040	34.104	173	109	5	54	223	30	200	3.37e-19	91.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44126.t1	AT4G38180	31.222	221	137	4	53	259	76	295	7.15e-21	97.8
MS.gene44126.t1	AT4G38180	27.835	194	125	5	210	391	448	638	5.49e-11	66.2
MS.gene44126.t1	AT5G28530	27.442	215	141	5	56	256	61	274	1.98e-16	83.6
MS.gene44126.t1	AT5G28530	27.442	215	141	5	56	256	61	274	1.98e-16	83.6
MS.gene44126.t1	AT5G28530	27.442	215	141	5	56	256	61	274	2.08e-16	83.6
MS.gene44126.t1	AT5G28530	27.451	204	137	5	56	254	61	258	2.65e-16	83.2
MS.gene44126.t1	AT5G28530	27.451	204	137	5	56	254	61	258	2.67e-16	83.2
MS.gene44126.t1	AT1G10240	29.648	199	132	6	56	247	54	251	8.74e-15	78.6
MS.gene44126.t1	AT1G10240	29.648	199	132	6	56	247	54	251	8.74e-15	78.6
MS.gene44126.t1	AT3G07500	32.164	171	90	7	54	213	37	192	7.10e-12	65.9

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Find 121 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCGTATGCTCGTTTCCA+TGG	0.435800	1.3:-58833916	MS.gene44126:CDS
AAAGGAGGACATGAAAATCT+TGG	0.412933	1.3:-58833535	MS.gene44126:CDS
AAAGTCTAATTTGCAAAAGA+TGG	0.463829	1.3:-58832343	MS.gene44126:CDS
AAAGTTCCTAGAAGTCAAAA+AGG	0.400507	1.3:-58832588	MS.gene44126:CDS
AAATGATGATATAAAAGCTA+TGG	0.514775	1.3:-58833974	MS.gene44126:CDS
AAATGGTCATGTTCCGCCGA+TGG	0.535969	1.3:-58832256	MS.gene44126:CDS
AAATGTCAATGGCAACAATA+AGG	0.413929	1.3:-58832114	MS.gene44126:CDS
AACAACATTCCTTTGTATCC+TGG	0.428695	1.3:-58831203	MS.gene44126:CDS
AACCATGGTGTTGGGTATGT+TGG	0.578818	1.3:-58831326	MS.gene44126:CDS
AACTTCTTCACAATTCCCTC+CGG	0.506498	1.3:-58831249	MS.gene44126:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTTCCTAGAAGTCAAAA+AGG	-	chr1.3:58832566-58832585	MS.gene44126:CDS	30.0%
AAATGTCAATGGCAACAATA+AGG	-	chr1.3:58833040-58833059	MS.gene44126:intron	30.0%
AAGGTCAATAAATCTGTTGT+TGG	-	chr1.3:58833059-58833078	MS.gene44126:intron	30.0%
AAGGTGTGAATTCATTTATC+AGG	-	chr1.3:58832367-58832386	MS.gene44126:CDS	30.0%
ACTTCATGACAGAAATAATG+TGG	+	chr1.3:58832767-58832786	None:intergenic	30.0%
AGGTCATAATGAGGAAAAAA+TGG	-	chr1.3:58832881-58832900	MS.gene44126:intron	30.0%
ATCAAATGAACAAGATTTGG+AGG	+	chr1.3:58831496-58831515	None:intergenic	30.0%
ATGGTGTATCAAAGAATAAG+TGG	-	chr1.3:58832253-58832272	MS.gene44126:CDS	30.0%
CGATTACTTTGCAATAAAGA+GGG	-	chr1.3:58831319-58831338	MS.gene44126:CDS	30.0%
CTACAGACATAATGAATTGT+TGG	-	chr1.3:58832455-58832474	MS.gene44126:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	58831040	58834136	58831040	ID=MS.gene44126
chr1.3	mRNA	58831040	58834136	58831040	ID=MS.gene44126.t1;Parent=MS.gene44126
chr1.3	exon	58833382	58834136	58833382	ID=MS.gene44126.t1.exon1;Parent=MS.gene44126.t1
chr1.3	CDS	58833382	58834136	58833382	ID=cds.MS.gene44126.t1;Parent=MS.gene44126.t1
chr1.3	exon	58832028	58832733	58832028	ID=MS.gene44126.t1.exon2;Parent=MS.gene44126.t1
chr1.3	CDS	58832028	58832733	58832028	ID=cds.MS.gene44126.t1;Parent=MS.gene44126.t1
chr1.3	exon	58831480	58831698	58831480	ID=MS.gene44126.t1.exon3;Parent=MS.gene44126.t1
chr1.3	CDS	58831480	58831698	58831480	ID=cds.MS.gene44126.t1;Parent=MS.gene44126.t1
chr1.3	exon	58831193	58831378	58831193	ID=MS.gene44126.t1.exon4;Parent=MS.gene44126.t1
chr1.3	CDS	58831193	58831378	58831193	ID=cds.MS.gene44126.t1;Parent=MS.gene44126.t1
chr1.3	exon	58831040	58831102	58831040	ID=MS.gene44126.t1.exon5;Parent=MS.gene44126.t1
chr1.3	CDS	58831040	58831102	58831040	ID=cds.MS.gene44126.t1;Parent=MS.gene44126.t1

Gene Sequence

>MS.gene44126

ATGTCAGCCTATAGTGAAGCAACTCAGCATCTCGATAATGATACTGTAGAGGTAGAATTCAGTAGTGATAATGGTTTTGGTAATGATGGAGATAGAAAGACAGAGAATTGCAATGGTCAGAAAAGTTTAAGTGAAATTACAAATGATGATATAAAAGCTATGGAGTTTAGCACAGAGGAAGAAGCTATACAATTTTACAAAGCGTATGCTCGTTTCCATGGGTTTGTCGTAAGGAAGGATGATGTGGTAAAGGATCACGAGGGAAAAATTGTTGCGCGGCGATTACTTTGCAATAAAGAGGGAAAGAGTGAAACTAAAAATAAGAAGAATGAAGATAGTAATAGGCAAACCATGCGAACTGGATGTCTTGCTAGACTTCGAGTAGCCTATGATTTCATTCAGAAGATTTGGAAAGTTACTAATGTTGAGCCCAATCACAACCATGAACTAAGTCCTCCAAATCTTGTTCATTTGATTCCGAATTATAGGAAATTGAGTGAATCGGATAAACAGATTGTTAGTGGTTTGCATTCTCAAGGTGTAAGAACCTGTCATATACTAGGTTTCTTAATGGGCCAAAAAGGAGGACATGAAAATCTTGGATTTATAAAAAAGGATCTATATAACTACACTGATCATCAAGGAAGGGTTAGAATTGAAGGTGGTGATACTTTTGCTACTTTGAGTTATTTTCAGGGTAAAGCTGATAATGATTCGACCTTTTTTTCAGAGTTTACCTTTACAGATGATGGTCGGTTAGAAAATATATTTTGGGCAGATTCTGCAAGCAGGCTTGATTATGAATGTTTTGGCGATGTGGTTCTCTTTGACGCCACTTATAAAAAGAACAGGTATGACAAGCCGCTTGTAATTTTTACAGGATTCAACCACCATGGTGAAACGACCATTTTTGCATGTGCTTTAATTTCTGATGAAACAATAGAGACATATAAGTGGGTGTTAAATGTGTTTTCAAAGGCCATGTACGAAAAACATCCAAAAGCGATTGTTACCGATGGAGATAAATCAATGAGGAAAGCTATTAGAGATGTATTTCCGAATTCAAGGCATCGCCTTTGTTCATGGCATCTACATCAAAATGCTTGTGTGCATGTAAAAGATCCCAGATTCTTAGAAGAGTTCAACAAACTCATGTATTCTAATTACACACCTGAACAATTTGAGTCTGAGTGGAAGAGAGTTGTTGACAGTTATGGTGTATCAAAGAATAAGTGGGTGATTAAAACATATAAATTGAAGCAAATGTGGGCAAGTTCATACATGCGAGACCATTTTGTGTGTGGAGTTAGAACGACATCGATATGTGAAGGTGTGAATTCATTTATCAGGAAGTATGTTCAAAACAAAAATAGCCTTGTTGATTTTCTGCATAATTTTGAAAGAGCTGTCAAAGACTACAGACATAATGAATTGTTGGCTGATTTCAAATCATTTTATTATAAACCTGTGTTGACAACTTCCTTGCCTGGATTTGAGCGTGAAGCTTCAGAAATATTCACTTTTAAAAAGTTCCTAGAAGTCAAAAAGGCGATAAAGGATGTTGCTGCAGAATCTGTCACTCACCATGCTGAGGTTGGAAATAGTGTAATTTTTAGGGTTAACGTTTACCGGAAAGATGCAGCTTTTTGGGTTCATCATGACAAGGAGCATAATAAATTTATATGTGATTGTAGACGATTTGAACGCGAAAGACTTCCATGTTCCCACATTATTTCTGTCATGAAGTATGAGAACATGGATGCTTTCCCAGAAAGTCTAATTTGCAAAAGATGGTCAAAAACAATAAAGAAGGATCACATCTCATCATTTGCCTCCAAAGAAGGTCATAATGAGGAAAAAATGGTCATGTTCCGCCGATGGGCACTTACCGCTGCATTCAATAGGCTTTGTGAGGTGTCTTGTAACAATGCCATTGATTATGAGGAAGCTTTGGAAGGGATTAATAGTTTGTGTGACAAGATAAATGTACGTCGTGAGGGAAATGTCAATGGCAACAATAAGGTCAATAAATCTGTTGTTGGAGATCCAGATAATGCTAAACCCAAAGGAGCCCCTAAAATGAAAAAATCATACAAAAATCAGAGACACGTGAAAGAAAGACGTTGTTCTCGTTGTAAAAGGCATGGTCACACAATCAGAAAGTGTCCAATACTTGCTGGAATTGATGTCACATTTGTAGATGAGGAGGAGGAGGAAAAGGATAAAGAAGAAGATGAGAAGGAGAAAGAGGATGAGAAGGAATACGAGGAGGACAAAGATGCAGAGGAGGAGGTGGAGGAGGAGGAAGATGATACACATGTTGAATCTGAATATGAATCAAATCGTTTAAATGTAAGTTTAAGATACTATATACACATGTTTTCCATCTTGTGATGAATTTGCTGTTGATGTTGATACTTTATTTCTTTTATGTCCAGGTGTCTATAAGCCATGACATGAATGATGAAACCCATTCTATGTCAGTACCAAATGGTAGACATGATGTTGATAATATCTTTGGTATTAAACGTAAGAGAGATGGTGACAAAGCCGGTTTTTCAACACAAGACTCTGCAGCGAATACCAAAACAACAAATATAGACATTAGAAAGACCGATGCTTCTGTGACTCCAAATATTACAGTTAATATTGAAAACGTAATTACTTATTTGTATTACATTGCTAAATATCGTTTTGATTTGAAATTTTATAATATGTTATCTTAATTAATTTAATTATTATGTTTTGATTGTTGTAGAATGGTATGCCACATGGATTTGCAAGATGGAACCATGGTGTTGGGTATGTTGGTAACTATTTTCCCGCTTTTCCTGTGTACGGTGGGATTCCAAATGTGGGTGGATTAACTTCTTCACAATTCCCTCCGGCAGACATCCTTCCATCACATTATAACAACATTCCTTTGTATCCTGGAACAAATAGTGTATGTTATACCAATTTTTTAAAACTTATTGATTGTGTTTATTTTGTTGTATTTTTATTTTCTTCTGATTGTTTCATTTATGTACGACAGTTTACGAGCGTGTTGAAGGACATGGAGAGTTCAGCAAAACATCAAAATAGATATCAAAATTAA

Protein sequence

>MS.gene44126.t1

MSAYSEATQHLDNDTVEVEFSSDNGFGNDGDRKTENCNGQKSLSEITNDDIKAMEFSTEEEAIQFYKAYARFHGFVVRKDDVVKDHEGKIVARRLLCNKEGKSETKNKKNEDSNRQTMRTGCLARLRVAYDFIQKIWKVTNVEPNHNHELSPPNLVHLIPNYRKLSESDKQIVSGLHSQGVRTCHILGFLMGQKGGHENLGFIKKDLYNYTDHQGRVRIEGGDTFATLSYFQGKADNDSTFFSEFTFTDDGRAVKDYRHNELLADFKSFYYKPVLTTSLPGFEREASEIFTFKKFLEVKKAIKDVAAESVTHHAEVGNSVIFRVNVYRKDAAFWVHHDKEHNKFICDCRRFERERLPCSHIISVMKYENMDAFPESLICKRWSKTIKKDHISSFASKEGHNEEKMVMFRRWALTAAFNRLCEVSCNNAIDYEEALEGINSLCDKINVRREGNVNGNNKVNKSVVGDPDNAKPKGAPKMKKSYKNQRHVSISHDMNDETHSMSVPNGRHDVDNIFGIKRKRDGDKAGFSTQDSAANTKTTNIDIRKTDASVTPNITVNIENNGMPHGFARWNHGVGYVGNYFPAFPVYGGIPNVGGLTSSQFPPADILPSHYNNIPLYPGTNSFTSVLKDMESSAKHQNRYQN