AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene44419

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene44419.t1 MTR_4g097940 89.355 310 27 2 1 310 1 304 0.0 565
MS.gene44419.t1 MTR_4g097920 87.419 310 33 2 1 310 1 304 0.0 553
MS.gene44419.t1 MTR_4g097920 87.119 295 32 2 16 310 1 289 0.0 524
MS.gene44419.t1 MTR_5g014640 44.277 332 133 13 1 310 1 302 9.69e-69 217
MS.gene44419.t1 MTR_2g010450 37.092 337 172 14 2 310 5 329 1.95e-45 157
MS.gene44419.t1 MTR_4g092700 42.678 239 127 6 76 310 77 309 4.04e-43 151
MS.gene44419.t1 MTR_8g009020 47.024 168 76 4 154 310 136 301 8.64e-43 150
MS.gene44419.t1 MTR_5g014600 41.702 235 105 9 101 310 86 313 9.24e-43 150
MS.gene44419.t1 MTR_6g047570 37.226 274 141 8 42 310 63 310 5.24e-42 148
MS.gene44419.t1 MTR_0250s0040 47.436 156 78 3 158 310 85 239 1.43e-41 145
MS.gene44419.t1 MTR_2g104550 47.674 172 83 3 144 310 121 290 4.52e-40 142
MS.gene44419.t1 MTR_0246s0020 44.615 195 84 6 125 310 174 353 1.02e-39 143
MS.gene44419.t1 MTR_0246s0020 44.615 195 84 6 125 310 174 353 1.13e-39 143
MS.gene44419.t1 MTR_0011s0210 47.097 155 78 2 159 310 181 334 8.58e-39 140
MS.gene44419.t1 MTR_5g014520 50.649 154 72 2 160 310 156 308 1.03e-38 139
MS.gene44419.t1 MTR_4g067010 44.324 185 84 5 129 310 127 295 4.21e-38 137
MS.gene44419.t1 MTR_0011s0260 47.097 155 78 2 159 310 181 334 4.77e-38 138
MS.gene44419.t1 MTR_4g066460 43.316 187 97 4 129 310 121 303 1.61e-37 136
MS.gene44419.t1 MTR_5g014560 44.937 158 75 4 160 310 130 282 2.16e-37 135
MS.gene44419.t1 MTR_4g009540 40.179 224 110 7 98 310 99 309 1.97e-36 133
MS.gene44419.t1 MTR_4g009110 39.827 231 105 9 98 310 114 328 4.64e-36 133
MS.gene44419.t1 MTR_4g009540 40.179 224 110 7 98 310 99 309 5.44e-36 132
MS.gene44419.t1 MTR_4g097950 49.697 165 62 6 161 310 70 228 2.98e-35 128
MS.gene44419.t1 MTR_0246s0050 41.212 165 92 2 146 310 136 295 2.34e-33 125
MS.gene44419.t1 MTR_4g098035 41.212 165 92 2 146 310 157 316 3.57e-33 125
MS.gene44419.t1 MTR_2g104490 42.857 168 94 2 144 310 120 286 1.90e-32 122
MS.gene44419.t1 MTR_4g066380 42.246 187 98 5 129 310 119 300 1.90e-32 123
MS.gene44419.t1 MTR_2g104490 42.857 168 94 2 144 310 120 286 2.03e-32 122
MS.gene44419.t1 MTR_8g069740 39.037 187 89 7 135 310 93 265 6.92e-32 120
MS.gene44419.t1 MTR_7g080780 45.283 159 80 2 152 310 143 294 1.74e-31 120
MS.gene44419.t1 MTR_7g080780 45.283 159 80 2 152 310 156 307 1.83e-31 120
MS.gene44419.t1 MTR_8g009010 32.107 299 142 10 22 310 3 250 1.38e-30 117
MS.gene44419.t1 MTR_2g104560 39.634 164 85 6 154 310 47 203 9.68e-30 113
MS.gene44419.t1 MTR_2g104590 36.196 163 76 3 154 310 62 202 3.31e-28 109
MS.gene44419.t1 MTR_2g104500 40.000 160 81 4 157 310 100 250 7.66e-26 103
MS.gene44419.t1 MTR_2g104530 36.702 188 99 5 130 310 78 252 3.77e-25 102
MS.gene44419.t1 MTR_2g104650 40.361 166 85 6 154 310 87 247 1.70e-24 100
MS.gene44419.t1 MTR_6g047550 56.944 72 31 0 157 228 169 240 5.99e-22 93.6
MS.gene44419.t1 MTR_5g014550 38.583 127 66 4 191 310 54 175 1.44e-19 85.1
MS.gene44419.t1 MTR_7g451650 37.241 145 78 5 166 310 44 175 2.79e-17 79.0
MS.gene44419.t1 MTR_7g451650 38.931 131 71 4 180 310 54 175 6.91e-17 77.8
MS.gene44419.t1 MTR_4g009510 37.857 140 77 5 172 310 53 183 3.38e-16 76.3
MS.gene44419.t1 MTR_8g024790 31.138 167 93 7 142 292 270 430 4.07e-16 79.0
MS.gene44419.t1 MTR_4g009420 34.722 144 67 4 172 310 54 175 6.56e-16 75.5
MS.gene44419.t1 MTR_4g009420 34.722 144 67 4 172 310 54 175 7.22e-16 75.1
MS.gene44419.t1 MTR_7g050350 37.190 121 68 3 190 310 1 113 1.51e-14 69.7
MS.gene44419.t1 MTR_7g451650 37.190 121 68 3 190 310 1 113 1.51e-14 69.7
MS.gene44419.t1 MTR_1g072320 50.000 64 30 1 161 224 470 531 5.37e-14 72.8
MS.gene44419.t1 MTR_8g024770 28.144 167 102 5 142 295 258 419 5.43e-14 72.4
MS.gene44419.t1 MTR_7g096350 46.250 80 38 2 144 221 341 417 1.07e-13 71.6
MS.gene44419.t1 MTR_8g027495 48.333 60 31 0 157 216 454 513 4.24e-13 70.1
MS.gene44419.t1 MTR_8g067280 31.928 166 95 5 144 295 448 609 4.91e-13 70.1
MS.gene44419.t1 MTR_5g030430 30.909 165 93 5 144 290 479 640 7.35e-13 69.3
MS.gene44419.t1 MTR_7g117670 50.000 56 28 0 161 216 402 457 3.25e-12 67.4
MS.gene44419.t1 MTR_8g098275 41.791 67 39 0 158 224 398 464 9.67e-12 65.9
MS.gene44419.t1 MTR_8g098275 41.791 67 39 0 158 224 241 307 9.68e-12 65.9
MS.gene44419.t1 MTR_8g098275 41.791 67 39 0 158 224 305 371 9.74e-12 65.9
MS.gene44419.t1 MTR_3g498695 32.824 131 74 4 102 232 253 369 2.55e-11 64.3
MS.gene44419.t1 MTR_3g498695 32.824 131 74 4 102 232 253 369 2.60e-11 64.3
MS.gene44419.t1 MTR_8g064700 27.879 165 106 4 154 308 237 398 6.82e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene44419.t1 AT2G22760 36.013 311 147 10 9 310 6 273 2.47e-47 161
MS.gene44419.t1 AT2G22760 36.013 311 147 10 9 310 6 273 2.52e-47 160
MS.gene44419.t1 AT4G37850 49.721 179 81 5 139 310 128 304 2.28e-46 159
MS.gene44419.t1 AT4G37850 49.721 179 81 5 139 310 128 304 2.28e-46 159
MS.gene44419.t1 AT2G22770 46.040 202 87 6 130 310 98 298 1.10e-39 142
MS.gene44419.t1 AT2G22750 41.778 225 110 6 98 310 66 281 1.17e-37 136
MS.gene44419.t1 AT2G22750 41.778 225 110 6 98 310 66 281 1.23e-37 136
MS.gene44419.t1 AT2G22750 47.953 171 79 3 148 310 137 305 1.40e-37 136
MS.gene44419.t1 AT2G22750 47.953 171 79 3 148 310 141 309 1.59e-37 136
MS.gene44419.t1 AT2G22750 47.953 171 79 3 148 310 141 309 1.62e-37 136
MS.gene44419.t1 AT1G32640 35.897 156 87 6 144 290 438 589 1.17e-16 80.9
MS.gene44419.t1 AT2G46510 47.561 82 40 1 135 216 372 450 1.69e-15 77.4
MS.gene44419.t1 AT5G46760 31.481 162 94 5 144 295 401 555 1.18e-12 68.9
MS.gene44419.t1 AT4G17880 31.447 159 94 5 144 295 402 552 1.43e-12 68.6
MS.gene44419.t1 AT1G01260 49.153 59 30 0 158 216 430 488 1.92e-12 68.2
MS.gene44419.t1 AT1G01260 49.153 59 30 0 158 216 430 488 1.92e-12 68.2
MS.gene44419.t1 AT1G01260 49.153 59 30 0 158 216 430 488 1.92e-12 68.2
MS.gene44419.t1 AT4G16430 40.506 79 43 1 142 216 297 375 9.54e-12 65.9
MS.gene44419.t1 AT4G09820 50.820 61 30 0 154 214 356 416 9.60e-12 65.9
MS.gene44419.t1 AT1G63650 44.068 59 33 0 156 214 400 458 1.06e-11 65.9
MS.gene44419.t1 AT1G63650 44.068 59 33 0 156 214 400 458 1.06e-11 65.9
MS.gene44419.t1 AT1G63650 44.068 59 33 0 156 214 400 458 1.06e-11 65.9
MS.gene44419.t1 AT4G29930 39.394 66 40 0 162 227 55 120 3.47e-11 61.6
MS.gene44419.t1 AT4G29930 39.394 66 40 0 162 227 55 120 4.60e-11 62.4
MS.gene44419.t1 AT4G29930 39.394 66 40 0 162 227 55 120 4.75e-11 62.0
MS.gene44419.t1 AT4G29930 39.394 66 40 0 162 227 55 120 5.18e-11 62.0
MS.gene44419.t1 AT4G29930 39.394 66 40 0 162 227 55 120 5.47e-11 62.4
MS.gene44419.t1 AT4G29930 39.394 66 40 0 162 227 55 120 5.58e-11 62.4
MS.gene44419.t1 AT4G29930 39.394 66 40 0 162 227 55 120 5.58e-11 62.4
MS.gene44419.t1 AT5G46830 32.143 140 85 5 161 295 343 477 5.73e-11 63.5

Find 54 sgRNAs with CRISPR-Local

Find 85 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATCAAATGAAATGATTT+TGG 0.105789 8.1:-24678213 None:intergenic
TGCATTTCAGTTTGATGATA+TGG 0.178721 8.1:+24678013 MS.gene44419:CDS
GATGGACAAGGCAACTATTT+TGG 0.186609 8.1:+24678661 MS.gene44419:intron
TACGGAGAAAACTTGAATTT+TGG 0.226888 8.1:+24678296 MS.gene44419:CDS
TTTGAATTAACAGGGATTAA+TGG 0.241351 8.1:+24677944 MS.gene44419:intron
GCTCTTTCCTCCATTCTTCC+TGG 0.259749 8.1:+24678452 MS.gene44419:CDS
AAAATCGAAGCAAGAGTTTC+TGG 0.260282 8.1:+24678848 MS.gene44419:CDS
CATTCTTCCTGGACTGAAAA+AGG 0.273836 8.1:+24678463 MS.gene44419:CDS
GGCCGCAATACTCAACTTAT+TGG 0.296853 8.1:+24678922 MS.gene44419:CDS
TGTAAATAGAAACCCTATTC+AGG 0.354615 8.1:+24678370 MS.gene44419:CDS
TGTTGTGTACTTACGAATTC+AGG 0.356450 8.1:-24677823 None:intergenic
ACATGATCTTGAGCCTGAAT+AGG 0.366395 8.1:-24678383 None:intergenic
CATGATCTTGAGCCTGAATA+GGG 0.371001 8.1:-24678382 None:intergenic
TCGCTTGTTGTTGATGTTGT+TGG 0.394714 8.1:-24678090 None:intergenic
GGAACAAGTAGCCGATAAAA+AGG 0.423518 8.1:+24678736 MS.gene44419:CDS
TGATATAACCATTGTTGCTC+AGG 0.429067 8.1:+24679003 MS.gene44419:CDS
TACGAATTCAGGCATGTACT+TGG 0.466492 8.1:-24677812 None:intergenic
TCAAGATAGTTATTTCCAAA+TGG 0.476177 8.1:-24678983 None:intergenic
AGGAAAGAGCAATGAATCTC+TGG 0.478665 8.1:-24678439 None:intergenic
TGTTCTGTGTGCTTTCAGAA+TGG 0.481082 8.1:-24678115 None:intergenic
TCCTTGAGTACTTTAGTTGG+CGG 0.485847 8.1:-24678185 None:intergenic
AAGAAGCTTAAAACCGAGAT+CGG 0.489570 8.1:+24678272 MS.gene44419:CDS
GAATCCTTGAGTACTTTAGT+TGG 0.495266 8.1:-24678188 None:intergenic
TAATGATTATGAGTACCCTA+TGG 0.498020 8.1:+24677983 MS.gene44419:CDS
AGGAATAAGTACTCTCTTGT+GGG 0.507070 8.1:-24678061 None:intergenic
GCTGAGACAACAGATTGATC+TGG 0.515599 8.1:-24678158 None:intergenic
CTTAAAACCGAGATCGGGTA+CGG 0.516391 8.1:+24678278 MS.gene44419:CDS
GGAACGAGTGAAGACATTAG+AGG 0.517587 8.1:+24678715 MS.gene44419:CDS
TCAGGCTCAAGATCATGTTA+TGG 0.518678 8.1:+24678388 MS.gene44419:CDS
TCTATTCTCTTCGACGATGA+TGG 0.521622 8.1:+24678785 MS.gene44419:CDS
TGAAATGCAGATGAATCCAT+AGG 0.526233 8.1:-24677999 None:intergenic
GATTGATCTGGACTTTCAGT+GGG 0.534032 8.1:-24678146 None:intergenic
AGATTGATCTGGACTTTCAG+TGG 0.535461 8.1:-24678147 None:intergenic
GTTGATGTTGTTGGTATGAG+AGG 0.543066 8.1:-24678081 None:intergenic
GAGGAATAAGTACTCTCTTG+TGG 0.546666 8.1:-24678062 None:intergenic
AGAAGCTTAAAACCGAGATC+GGG 0.550283 8.1:+24678273 MS.gene44419:CDS
TTTGGAAGTGTGATATCTCA+AGG 0.551675 8.1:+24678314 MS.gene44419:CDS
AAAACATATGAAGCAACTAA+AGG 0.561488 8.1:+24678694 MS.gene44419:CDS
TTCCAATAAGTTGAGTATTG+CGG 0.565334 8.1:-24678924 None:intergenic
TGAGTATTGCGGCCGCAGAT+CGG 0.574788 8.1:-24678913 None:intergenic
GAAATGCAGATGAATCCATA+GGG 0.600361 8.1:-24677998 None:intergenic
ACCGCCAACTAAAGTACTCA+AGG 0.600887 8.1:+24678184 MS.gene44419:CDS
GAATTAACAGGGATTAATGG+AGG 0.608513 8.1:+24677947 MS.gene44419:intron
GACATGCTCATCAGAATCCA+CGG 0.608624 8.1:+24678875 MS.gene44419:CDS
TTATTATAAACGAGAGAACA+AGG 0.617033 8.1:+24678340 MS.gene44419:CDS
GGCCGCAATGTTTATCACCG+TGG 0.620508 8.1:-24678892 None:intergenic
TAAACATTGCGGCCGATCTG+CGG 0.633204 8.1:+24678901 MS.gene44419:CDS
GGAATAAGTACTCTCTTGTG+GGG 0.633544 8.1:-24678060 None:intergenic
TTTCAGTCCAGGAAGAATGG+AGG 0.639981 8.1:-24678459 None:intergenic
ACTTTGCATGCAGATGGACA+AGG 0.646531 8.1:+24678649 MS.gene44419:intron
TATGGCCGAAAGAAGACGAA+GGG 0.657033 8.1:+24678406 MS.gene44419:CDS
TTATGGCCGAAAGAAGACGA+AGG 0.705183 8.1:+24678405 MS.gene44419:CDS
ATCCACGGTGATAAACATTG+CGG 0.719186 8.1:+24678890 MS.gene44419:CDS
ATTGATCTGGACTTTCAGTG+GGG 0.733516 8.1:-24678145 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAAATTTACATACTAATT+AGG + chr8.1:24678565-24678584 MS.gene44419:intron 15.0%
!!! ATTATCAAATGAAATGATTT+TGG - chr8.1:24678216-24678235 None:intergenic 15.0%
!!! TTATCAAATGAAATGATTTT+GGG - chr8.1:24678215-24678234 None:intergenic 15.0%
!! AAATATTATGCATTTGAATG+TGG + chr8.1:24678508-24678527 MS.gene44419:intron 20.0%
!! AATATTATGCATTTGAATGT+GGG + chr8.1:24678509-24678528 MS.gene44419:intron 20.0%
!! TAATTCAAAGAAAAAGAGTA+AGG - chr8.1:24677933-24677952 None:intergenic 20.0%
!! TCACTATGATATTAAAACTA+AGG - chr8.1:24679267-24679286 None:intergenic 20.0%
!!! TCTTTTTCTTTGAATTAACA+GGG + chr8.1:24677936-24677955 MS.gene44419:intron 20.0%
! AAAACATATGAAGCAACTAA+AGG + chr8.1:24678694-24678713 MS.gene44419:CDS 25.0%
! GGAATATTGCTTAACAATAA+AGG + chr8.1:24679138-24679157 MS.gene44419:intron 25.0%
! TTATTATAAACGAGAGAACA+AGG + chr8.1:24678340-24678359 MS.gene44419:CDS 25.0%
! TTTGAATTAACAGGGATTAA+TGG + chr8.1:24677944-24677963 MS.gene44419:intron 25.0%
!! CTCTTTTTCTTTGAATTAAC+AGG + chr8.1:24677935-24677954 MS.gene44419:intron 25.0%
!! TCAAGATAGTTATTTCCAAA+TGG - chr8.1:24678986-24679005 None:intergenic 25.0%
!! TTCTCAACAATTTTACAACA+TGG + chr8.1:24678238-24678257 MS.gene44419:CDS 25.0%
!!! AGTAGTTCTATTTTACCATT+TGG + chr8.1:24678968-24678987 MS.gene44419:CDS 25.0%
!!! TTTTTTCTTGCAGATGAATA+AGG + chr8.1:24679117-24679136 MS.gene44419:intron 25.0%
TAATGATTATGAGTACCCTA+TGG + chr8.1:24677983-24678002 MS.gene44419:CDS 30.0%
TAATTGAGCTGAATTAGTGA+CGG + chr8.1:24679050-24679069 MS.gene44419:intron 30.0%
TGGTTAATACTACTTGATAG+AGG - chr8.1:24678623-24678642 None:intergenic 30.0%
TGTAAATAGAAACCCTATTC+AGG + chr8.1:24678370-24678389 MS.gene44419:CDS 30.0%
! AAACTCTTGCTTCGATTTTT+GGG - chr8.1:24678847-24678866 None:intergenic 30.0%
! AAATTTTACCTGAGCAACAA+TGG - chr8.1:24679014-24679033 None:intergenic 30.0%
! ATTTTACAACATGGATGCAA+AGG + chr8.1:24678247-24678266 MS.gene44419:CDS 30.0%
! TACGGAGAAAACTTGAATTT+TGG + chr8.1:24678296-24678315 MS.gene44419:CDS 30.0%
! TGCATTTCAGTTTGATGATA+TGG + chr8.1:24678013-24678032 MS.gene44419:CDS 30.0%
! TTCCAATAAGTTGAGTATTG+CGG - chr8.1:24678927-24678946 None:intergenic 30.0%
AAAATCGAAGCAAGAGTTTC+TGG + chr8.1:24678848-24678867 MS.gene44419:CDS 35.0%
AAGAAGCTTAAAACCGAGAT+CGG + chr8.1:24678272-24678291 MS.gene44419:CDS 35.0%
AGGAATAAGTACTCTCTTGT+GGG - chr8.1:24678064-24678083 None:intergenic 35.0%
ATATGTTGATGCCTTGAAAC+TGG - chr8.1:24679218-24679237 None:intergenic 35.0%
ATCCAAAACAACCAGTTTCA+AGG + chr8.1:24679204-24679223 MS.gene44419:intron 35.0%
GAAATGCAGATGAATCCATA+GGG - chr8.1:24678001-24678020 None:intergenic 35.0%
GAATCCTTGAGTACTTTAGT+TGG - chr8.1:24678191-24678210 None:intergenic 35.0%
GAATTAACAGGGATTAATGG+AGG + chr8.1:24677947-24677966 MS.gene44419:intron 35.0%
TGAAATGCAGATGAATCCAT+AGG - chr8.1:24678002-24678021 None:intergenic 35.0%
TGATATAACCATTGTTGCTC+AGG + chr8.1:24679003-24679022 MS.gene44419:CDS 35.0%
TGTTGTGTACTTACGAATTC+AGG - chr8.1:24677826-24677845 None:intergenic 35.0%
! GAAACTCTTGCTTCGATTTT+TGG - chr8.1:24678848-24678867 None:intergenic 35.0%
! TTTGGAAGTGTGATATCTCA+AGG + chr8.1:24678314-24678333 MS.gene44419:CDS 35.0%
!! GATATCGTCGTTTTGAATTG+CGG - chr8.1:24678601-24678620 None:intergenic 35.0%
!!! TATAGTACCTTTTTCAGTCC+AGG - chr8.1:24678473-24678492 None:intergenic 35.0%
!!! TGCTGATTCGACCTTTTTAT+CGG - chr8.1:24678750-24678769 None:intergenic 35.0%
ACATGATCTTGAGCCTGAAT+AGG - chr8.1:24678386-24678405 None:intergenic 40.0%
AGAAGCTTAAAACCGAGATC+GGG + chr8.1:24678273-24678292 MS.gene44419:CDS 40.0%
AGATTGATCTGGACTTTCAG+TGG - chr8.1:24678150-24678169 None:intergenic 40.0%
AGGAAAGAGCAATGAATCTC+TGG - chr8.1:24678442-24678461 None:intergenic 40.0%
ATCCACGGTGATAAACATTG+CGG + chr8.1:24678890-24678909 MS.gene44419:CDS 40.0%
ATGTTCACTTTGCATGCAGA+TGG + chr8.1:24678643-24678662 MS.gene44419:intron 40.0%
ATTGATCTGGACTTTCAGTG+GGG - chr8.1:24678148-24678167 None:intergenic 40.0%
CATGATCTTGAGCCTGAATA+GGG - chr8.1:24678385-24678404 None:intergenic 40.0%
CATTCTTCCTGGACTGAAAA+AGG + chr8.1:24678463-24678482 MS.gene44419:CDS 40.0%
GAGGAATAAGTACTCTCTTG+TGG - chr8.1:24678065-24678084 None:intergenic 40.0%
GATTGATCTGGACTTTCAGT+GGG - chr8.1:24678149-24678168 None:intergenic 40.0%
GGAACAAGTAGCCGATAAAA+AGG + chr8.1:24678736-24678755 MS.gene44419:CDS 40.0%
GGAATAAGTACTCTCTTGTG+GGG - chr8.1:24678063-24678082 None:intergenic 40.0%
GTTGATGTTGTTGGTATGAG+AGG - chr8.1:24678084-24678103 None:intergenic 40.0%
TACGAATTCAGGCATGTACT+TGG - chr8.1:24677815-24677834 None:intergenic 40.0%
TCAGGCTCAAGATCATGTTA+TGG + chr8.1:24678388-24678407 MS.gene44419:CDS 40.0%
TCCTTGAGTACTTTAGTTGG+CGG - chr8.1:24678188-24678207 None:intergenic 40.0%
TCTATTCTCTTCGACGATGA+TGG + chr8.1:24678785-24678804 MS.gene44419:CDS 40.0%
TCTGCATGCAAAGTGAACAT+TGG - chr8.1:24678643-24678662 None:intergenic 40.0%
TGTTCTGTGTGCTTTCAGAA+TGG - chr8.1:24678118-24678137 None:intergenic 40.0%
! CTTTTCCCTTCGTCTTCTTT+CGG - chr8.1:24678414-24678433 None:intergenic 40.0%
! GAAGCATAAGTCAGGTTTTG+AGG + chr8.1:24679170-24679189 MS.gene44419:intron 40.0%
! GATGGACAAGGCAACTATTT+TGG + chr8.1:24678661-24678680 MS.gene44419:intron 40.0%
! TCTCGTAAGAAGCATAAGTC+AGG + chr8.1:24679162-24679181 MS.gene44419:intron 40.0%
! TGCCTTGAAACTGGTTGTTT+TGG - chr8.1:24679209-24679228 None:intergenic 40.0%
!! TCGCTTGTTGTTGATGTTGT+TGG - chr8.1:24678093-24678112 None:intergenic 40.0%
!!! CTTTTTCAGTCCAGGAAGAA+TGG - chr8.1:24678465-24678484 None:intergenic 40.0%
ACTTTGCATGCAGATGGACA+AGG + chr8.1:24678649-24678668 MS.gene44419:intron 45.0%
CTTAAAACCGAGATCGGGTA+CGG + chr8.1:24678278-24678297 MS.gene44419:CDS 45.0%
GACATGCTCATCAGAATCCA+CGG + chr8.1:24678875-24678894 MS.gene44419:CDS 45.0%
GCTGAGACAACAGATTGATC+TGG - chr8.1:24678161-24678180 None:intergenic 45.0%
GGAACGAGTGAAGACATTAG+AGG + chr8.1:24678715-24678734 MS.gene44419:CDS 45.0%
GGCCGCAATACTCAACTTAT+TGG + chr8.1:24678922-24678941 MS.gene44419:CDS 45.0%
TATGGCCGAAAGAAGACGAA+GGG + chr8.1:24678406-24678425 MS.gene44419:CDS 45.0%
TTATGGCCGAAAGAAGACGA+AGG + chr8.1:24678405-24678424 MS.gene44419:CDS 45.0%
TTTCAGTCCAGGAAGAATGG+AGG - chr8.1:24678462-24678481 None:intergenic 45.0%
! ACCGCCAACTAAAGTACTCA+AGG + chr8.1:24678184-24678203 MS.gene44419:CDS 45.0%
GCTCTTTCCTCCATTCTTCC+TGG + chr8.1:24678452-24678471 MS.gene44419:CDS 50.0%
TAAACATTGCGGCCGATCTG+CGG + chr8.1:24678901-24678920 MS.gene44419:CDS 50.0%
! GTTTTCTCCGTACCCGATCT+CGG - chr8.1:24678288-24678307 None:intergenic 50.0%
GGCCGCAATGTTTATCACCG+TGG - chr8.1:24678895-24678914 None:intergenic 55.0%
! TGAGTATTGCGGCCGCAGAT+CGG - chr8.1:24678916-24678935 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 24677793 24679286 24677793 ID=MS.gene44419
chr8.1 mRNA 24677793 24679286 24677793 ID=MS.gene44419.t1;Parent=MS.gene44419
chr8.1 exon 24677793 24677831 24677793 ID=MS.gene44419.t1.exon1;Parent=MS.gene44419.t1
chr8.1 CDS 24677793 24677831 24677793 ID=cds.MS.gene44419.t1;Parent=MS.gene44419.t1
chr8.1 exon 24677957 24678484 24677957 ID=MS.gene44419.t1.exon2;Parent=MS.gene44419.t1
chr8.1 CDS 24677957 24678484 24677957 ID=cds.MS.gene44419.t1;Parent=MS.gene44419.t1
chr8.1 exon 24678662 24679024 24678662 ID=MS.gene44419.t1.exon3;Parent=MS.gene44419.t1
chr8.1 CDS 24678662 24679024 24678662 ID=cds.MS.gene44419.t1;Parent=MS.gene44419.t1
chr8.1 exon 24679284 24679286 24679284 ID=MS.gene44419.t1.exon4;Parent=MS.gene44419.t1
chr8.1 CDS 24679284 24679286 24679284 ID=cds.MS.gene44419.t1;Parent=MS.gene44419.t1
Gene Sequence

>MS.gene44419

ATGATTCAAATTTCGTCTACCAAGTACATGCCTGAATTCGTAAGTACACAACACACTAAGTGCATATTTAGATTGTTTACGAGATTGATAGAATCACGATGAACTAGAGTAATTTTGACAAATTCAAAATTCTTTTACCTTACTCTTTTTCTTTGAATTAACAGGGATTAATGGAGGACACTACTTTGTTTAATGATTATGAGTACCCTATGGATTCATCTGCATTTCAGTTTGATGATATGGCATACTTCAAGTCTTTCTCAGCATCCCCACAAGAGAGTACTTATTCCTCTCATACCAACAACATCAACAACAAGCGAATCCATTCTGAAAGCACACAGAACAGTTCTTTCCCCACTGAAAGTCCAGATCAATCTGTTGTCTCAGCAACACCGCCAACTAAAGTACTCAAGGATTCTCCCAAAATCATTTCATTTGATAATTCTTCTCAACAATTTTACAACATGGATGCAAAGGTTAAGAAGCTTAAAACCGAGATCGGGTACGGAGAAAACTTGAATTTTGGAAGTGTGATATCTCAAGGTGATTATTATAAACGAGAGAACAAGGTTGCTGCTGTAAATAGAAACCCTATTCAGGCTCAAGATCATGTTATGGCCGAAAGAAGACGAAGGGAAAAGCTTAGCCAGAGATTCATTGCTCTTTCCTCCATTCTTCCTGGACTGAAAAAGGTACTATATAACATATATTGTATAAATATTATGCATTTGAATGTGGGTAGTTGTGTTGCAAATTGCAATCTTTAATATTGAGAAAATTTACATACTAATTAGGTTAATGCAGACCGCAATTCAAAACGACGATATCCTCTATCAAGTAGTATTAACCAATGTTCACTTTGCATGCAGATGGACAAGGCAACTATTTTGGAAGATGCTATAAAACATATGAAGCAACTAAAGGAACGAGTGAAGACATTAGAGGAACAAGTAGCCGATAAAAAGGTCGAATCAGCAGTCTTTGTGAAGAGATCTATTCTCTTCGACGATGATGGCAGCTCTTCTTGCGACGACAACTCAGACAAATCACTCCCAAAAATCGAAGCAAGAGTTTCTGGAAAAGACATGCTCATCAGAATCCACGGTGATAAACATTGCGGCCGATCTGCGGCCGCAATACTCAACTTATTGGAAAAGCATCATCTCACTGTTCAAAGTAGTTCTATTTTACCATTTGGAAATAACTATCTTGATATAACCATTGTTGCTCAGGTAAAATTTATTCATATTTCAAACATAATTGAGCTGAATTAGTGACGGATTTTTTTTATTTTCTTCTCTAATATTCGTTGTTAATTTAATTTTTTTTTCTTGCAGATGAATAAGGAATATTGCTTAACAATAAAGGATCTCGTAAGAAGCATAAGTCAGGTTTTGAGGCAGCATATTTGATCCAAAACAACCAGTTTCAAGGCATCAACATATGTGATGACTATAATCTATAGTAATGACCTTAGTTTTAATATCATAGTGA
Protein sequence

>MS.gene44419.t1

MIQISSTKYMPEFGLMEDTTLFNDYEYPMDSSAFQFDDMAYFKSFSASPQESTYSSHTNNINNKRIHSESTQNSSFPTESPDQSVVSATPPTKVLKDSPKIISFDNSSQQFYNMDAKVKKLKTEIGYGENLNFGSVISQGDYYKRENKVAAVNRNPIQAQDHVMAERRRREKLSQRFIALSSILPGLKKMDKATILEDAIKHMKQLKERVKTLEEQVADKKVESAVFVKRSILFDDDGSSSCDDNSDKSLPKIEARVSGKDMLIRIHGDKHCGRSAAAILNLLEKHHLTVQSSSILPFGNNYLDITIVAQ