AlfalfaGEDB | MS.gene44432

M. sativa cultivar XinJiangDaYe / MS.gene44432

KEGG: K09338
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00046.32 PF02183.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44432.t1	XP_013457515.1	98.5	271	3	1	1	270	1	271	8.90E-141	509.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44432.t1	P46604	62.1	290	78	9	1	270	1	278	9.5e-75	281.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44432.t1	A0A072UQB3	98.5	271	3	1	1	270	1	271	6.4e-141	509.6

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene44432.t1	TF	HB-HD-ZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44432.t1	MTR_4g097600	98.524	271	3	1	1	270	1	271	0.0	550
MS.gene44432.t1	MTR_5g014890	63.860	285	73	8	1	270	1	270	1.27e-102	300
MS.gene44432.t1	MTR_1g054285	62.963	189	48	4	68	255	116	283	3.64e-72	223
MS.gene44432.t1	MTR_2g061030	76.119	134	31	1	108	240	180	313	1.79e-67	213
MS.gene44432.t1	MTR_7g093430	76.984	126	27	1	115	240	150	273	1.08e-65	207
MS.gene44432.t1	MTR_5g013010	68.293	164	42	4	79	240	95	250	2.89e-65	206
MS.gene44432.t1	MTR_1g017090	45.847	301	114	9	5	270	2	288	7.76e-65	204
MS.gene44432.t1	MTR_4g100550	66.667	162	41	2	80	240	85	234	1.01e-64	204
MS.gene44432.t1	MTR_8g006705	82.456	114	19	1	126	238	145	258	7.68e-62	197
MS.gene44432.t1	MTR_3g103590	54.124	194	64	6	90	268	117	300	7.21e-50	166

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44432.t1	AT4G37790	61.806	288	82	9	1	270	1	278	2.52e-91	271
MS.gene44432.t1	AT2G22800	58.163	294	79	11	1	270	1	274	2.54e-83	251
MS.gene44432.t1	AT5G06710	61.376	189	56	4	76	254	136	317	4.81e-70	219
MS.gene44432.t1	AT5G47370	57.789	199	74	4	72	264	70	264	1.69e-66	208
MS.gene44432.t1	AT3G60390	60.656	183	57	6	69	238	94	274	1.18e-62	199
MS.gene44432.t1	AT4G17460	60.221	181	64	5	68	241	71	250	4.60e-62	197
MS.gene44432.t1	AT4G16780	75.194	129	30	2	112	239	115	242	1.93e-61	196
MS.gene44432.t1	AT2G44910	79.130	115	23	1	126	239	162	276	6.97e-59	190
MS.gene44432.t1	AT2G01430	54.676	139	56	2	106	239	113	249	2.34e-44	151
MS.gene44432.t1	AT1G70920	52.941	136	57	1	114	249	26	154	1.00e-40	139

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Find 59 sgRNAs with CRISPR-Local

Find 87 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATTAACAGAAGAGAAT+AGG	0.467293	8.1:-24848001	MS.gene44432:CDS
AAAGCTGAAGCAAACAGAAG+TGG	0.566126	8.1:-24848051	MS.gene44432:CDS
AAAGGAGGTGCAAGAATTAA+AGG	0.295896	8.1:-24847970	MS.gene44432:CDS
AACCAGACCTCAACTTGTCG+AGG	0.626268	8.1:+24848502	None:intergenic
AAGACGGTGCCACTGCAGCT+AGG	0.595899	8.1:-24848738	MS.gene44432:CDS
AAGCATAGCAGATTGATCTT+TGG	0.351274	8.1:+24848699	None:intergenic
AAGCTTCTTCCTAGCTGCAG+TGG	0.601402	8.1:+24848729	None:intergenic
ACATGAAGGGCACATAGTAA+GGG	0.623367	8.1:+24847902	None:intergenic
AGAAATGGAAACGACGGAGA+TGG	0.553541	8.1:-24848794	MS.gene44432:CDS
AGAGAATAGGAGGCTACAAA+AGG	0.550932	8.1:-24847988	MS.gene44432:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTTATATTGCAGTACACAA+CGG	+	chr8.1:24848582-24848601	None:intergenic	30.0%
CCCATACATACTATTGTAAA+TGG	-	chr8.1:24848665-24848684	MS.gene44432:CDS	30.0%
CTTAGAGAAATTGCTCTTAT+TGG	+	chr8.1:24849051-24849070	None:intergenic	30.0%
GTTTGTGTAGAAAAATCAAG+AGG	+	chr8.1:24847998-24848017	None:intergenic	30.0%
TGAATTAGAAATGGAAACGA+CGG	-	chr8.1:24848090-24848109	MS.gene44432:intron	30.0%
TGTTAGCAGTGAATTAGAAA+TGG	-	chr8.1:24848081-24848100	MS.gene44432:intron	30.0%
AAGCATAGCAGATTGATCTT+TGG	+	chr8.1:24848194-24848213	None:intergenic	35.0%
AGGTGTTAGATTTAACTCTC+TGG	+	chr8.1:24848371-24848390	None:intergenic	35.0%
AGGTTCTTCATAGTAACTCT+TGG	+	chr8.1:24847978-24847997	None:intergenic	35.0%
CATTAACAGAAGAGAATAGG+AGG	-	chr8.1:24848892-24848911	MS.gene44432:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	24847797	24849115	24847797	ID=MS.gene44432
chr8.1	mRNA	24847797	24849115	24847797	ID=MS.gene44432.t1;Parent=MS.gene44432
chr8.1	exon	24848663	24849115	24848663	ID=MS.gene44432.t1.exon1;Parent=MS.gene44432.t1
chr8.1	CDS	24848663	24849115	24848663	ID=cds.MS.gene44432.t1;Parent=MS.gene44432.t1
chr8.1	exon	24848484	24848563	24848484	ID=MS.gene44432.t1.exon2;Parent=MS.gene44432.t1
chr8.1	CDS	24848484	24848563	24848484	ID=cds.MS.gene44432.t1;Parent=MS.gene44432.t1
chr8.1	exon	24847797	24848076	24847797	ID=MS.gene44432.t1.exon3;Parent=MS.gene44432.t1
chr8.1	CDS	24847797	24848076	24847797	ID=cds.MS.gene44432.t1;Parent=MS.gene44432.t1

Gene Sequence

>MS.gene44432

ATGGGTCTTAATAATCAAGATGCTAGTAACAACTCAGGCCTTCAACTTATTCTAGGCTTAGCTCTTACTCTTACCAAACAAGACACACCACCATCCAACAACAACGTTACAAAGCCTTATTCCTCAAGTAATCATAACAACTATGAAGCTGAACCATCTTTAACGTTGGGTTTATCCACCAAGAGTTACTATGAAGAACCTCTTGATTTTTCTACACAAACAAACTCACCTCATCACAGCGTTGTTTCCTCTTTCTCTAGTGGGAGGGTGAAGAGAGAAAGAGATGTTAGCAGTGAATTAGAAATGGAAACGACGGAGATGGAGAGAGTTTCTTCGAGAATCAGCGACGAAGATGAAGACGGTGCCACTGCAGCTAGGAAGAAGCTTAGACTTACCAAAGATCAATCTGCTATGCTTGAAGAAAGCTTCAAAGAACACAGCACTCTCAATCCTGTAATCATAATCATAATCTCTTTCTATAGTTACATATCTTATTATTATTATTTTCATTTTTTTCCATTTATTTATCAAATTTTTGTCATGGATTTACAGAAACAGAAGCAAGCTTTAGCCAGAGAGTTAAATCTAACACCTCGACAAGTTGAGGTCTGGTTCCAGAACCGTAGAGCCAGGTACCTAAACATAAATATATACATAATATATTCAATTTATAAATGAAATTAAATTAAACTCAACTATGGTTTTAAATTGCGGTTGCAGTTTTTGGTGGAAACTGCAACGACTGCACTATAATTGTGATGTCGTTGCATAAACCTCAAAAACCGTTGTGTACTGCAATATAAGTACTAGAGCCAATGAAATATTATCTTCAGATTAATTAAGGGTACCACATAAATATCATATATCACCCATACATACTATTGTAAATGGATGGCCCAGAATAAGTTGAATTGAAATAATTTTTTTAATCATTATTCATGTATTTACGTACACATATTATAAATTATGGGTTTGATAAATATATGTTAAAAATATGTTATATTAACATTATTTTTGGTTTGGATTTTGGGTGTAACAGAACAAAGCTGAAGCAAACAGAAGTGGATTGTGAGTTCCTAAAGAAATGTTGTGAAACATTAACAGAAGAGAATAGGAGGCTACAAAAGGAGGTGCAAGAATTAAAGGCACTAAAACTAGCACAACCCTTGTATATGCCTATGCCTGCTGCTACCCTTACTATGTGCCCTTCATGTGAGAGACTAGGTGGTGGTGGTGTTAATGGTGGTTCTTCCAATAAGAGCAATTTCTCTAAGCCTCACTTTTACAATCCCTTCACAAATTCTTCAGCAGCATGTTGA

Protein sequence

>MS.gene44432.t1

MGLNNQDASNNSGLQLILGLALTLTKQDTPPSNNNVTKPYSSSNHNNYEAEPSLTLGLSTKSYYEEPLDFSTQTNSPHHSVVSSFSSGRVKRERDVSSELEMETTEMERVSSRISDEDEDGATAARKKLRLTKDQSAMLEESFKEHSTLNPKQKQALARELNLTPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTEENRRLQKEVQELKALKLAQPLYMPMPAATLTMCPSCERLGGGGVNGGSSNKSNFSKPHFYNPFTNSSAAC