AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene44432

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene44432.t1 MTR_4g097600 98.524 271 3 1 1 270 1 271 0.0 550
MS.gene44432.t1 MTR_5g014890 63.860 285 73 8 1 270 1 270 1.27e-102 300
MS.gene44432.t1 MTR_1g054285 62.963 189 48 4 68 255 116 283 3.64e-72 223
MS.gene44432.t1 MTR_2g061030 76.119 134 31 1 108 240 180 313 1.79e-67 213
MS.gene44432.t1 MTR_7g093430 76.984 126 27 1 115 240 150 273 1.08e-65 207
MS.gene44432.t1 MTR_5g013010 68.293 164 42 4 79 240 95 250 2.89e-65 206
MS.gene44432.t1 MTR_1g017090 45.847 301 114 9 5 270 2 288 7.76e-65 204
MS.gene44432.t1 MTR_4g100550 66.667 162 41 2 80 240 85 234 1.01e-64 204
MS.gene44432.t1 MTR_8g006705 82.456 114 19 1 126 238 145 258 7.68e-62 197
MS.gene44432.t1 MTR_3g103590 54.124 194 64 6 90 268 117 300 7.21e-50 166
MS.gene44432.t1 MTR_4g084750 63.866 119 37 1 126 238 64 182 1.02e-48 160
MS.gene44432.t1 MTR_2g038625 44.211 190 93 4 54 239 15 195 1.38e-39 137
MS.gene44432.t1 MTR_2g038580 44.211 190 93 4 54 239 15 195 1.38e-39 137
MS.gene44432.t1 MTR_4g126900 59.649 114 42 2 129 238 90 203 3.93e-35 125
MS.gene44432.t1 MTR_5g013010 62.376 101 29 3 79 178 95 187 6.36e-28 106
MS.gene44432.t1 MTR_5g039000 47.664 107 54 1 114 218 62 168 4.36e-21 90.5
MS.gene44432.t1 MTR_7g103340 42.991 107 61 0 108 214 44 150 1.72e-20 87.8
MS.gene44432.t1 MTR_3g080100 35.417 192 112 5 80 261 12 201 3.59e-20 87.4
MS.gene44432.t1 MTR_3g080100 38.365 159 88 4 113 261 4 162 6.80e-20 85.9
MS.gene44432.t1 MTR_8g468210 42.735 117 64 1 102 218 55 168 1.16e-19 86.7
MS.gene44432.t1 MTR_7g010020 46.602 103 51 1 118 216 71 173 5.28e-19 84.3
MS.gene44432.t1 MTR_6g007647 50.000 88 44 0 127 214 33 120 6.63e-19 84.0
MS.gene44432.t1 MTR_1g061660 48.315 89 46 0 127 215 59 147 6.66e-19 83.6
MS.gene44432.t1 MTR_6g007647 50.000 88 44 0 127 214 67 154 7.53e-19 84.3
MS.gene44432.t1 MTR_4g107650 45.455 99 54 0 116 214 84 182 2.58e-17 80.9
MS.gene44432.t1 MTR_8g089895 47.170 106 47 2 118 214 43 148 3.35e-17 80.1
MS.gene44432.t1 MTR_3g086790 37.975 158 85 5 119 265 52 207 4.38e-17 79.7
MS.gene44432.t1 MTR_6g011610 45.192 104 49 2 118 213 86 189 8.59e-17 78.6
MS.gene44432.t1 MTR_5g038280 40.000 135 65 3 87 213 54 180 9.78e-17 79.0
MS.gene44432.t1 MTR_6g011610 45.192 104 49 2 118 213 67 170 1.60e-16 77.4
MS.gene44432.t1 MTR_8g469430 46.809 94 43 1 127 213 89 182 7.67e-16 75.9
MS.gene44432.t1 MTR_5g019680 43.689 103 53 1 119 221 45 142 1.10e-12 65.9
MS.gene44432.t1 MTR_5g019650 42.857 105 58 1 119 221 45 149 1.19e-12 65.9
MS.gene44432.t1 MTR_3g092150 43.011 93 46 1 130 215 41 133 3.41e-12 65.1
MS.gene44432.t1 MTR_8g026960 42.683 82 47 0 131 212 38 119 2.27e-11 62.8
MS.gene44432.t1 MTR_5g029320 35.849 106 68 0 118 223 83 188 5.00e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene44432.t1 AT4G37790 61.806 288 82 9 1 270 1 278 2.52e-91 271
MS.gene44432.t1 AT2G22800 58.163 294 79 11 1 270 1 274 2.54e-83 251
MS.gene44432.t1 AT5G06710 61.376 189 56 4 76 254 136 317 4.81e-70 219
MS.gene44432.t1 AT5G47370 57.789 199 74 4 72 264 70 264 1.69e-66 208
MS.gene44432.t1 AT3G60390 60.656 183 57 6 69 238 94 274 1.18e-62 199
MS.gene44432.t1 AT4G17460 60.221 181 64 5 68 241 71 250 4.60e-62 197
MS.gene44432.t1 AT4G16780 75.194 129 30 2 112 239 115 242 1.93e-61 196
MS.gene44432.t1 AT2G44910 79.130 115 23 1 126 239 162 276 6.97e-59 190
MS.gene44432.t1 AT2G01430 54.676 139 56 2 106 239 113 249 2.34e-44 151
MS.gene44432.t1 AT1G70920 52.941 136 57 1 114 249 26 154 1.00e-40 139
MS.gene44432.t1 AT1G70920 56.349 126 48 1 114 239 56 174 1.15e-40 140
MS.gene44432.t1 AT5G06710 59.292 113 29 4 76 178 136 241 4.89e-30 114
MS.gene44432.t1 AT2G01430 50.526 95 40 2 106 195 113 205 1.10e-22 93.2
MS.gene44432.t1 AT1G69780 46.465 99 53 0 116 214 74 172 7.38e-20 87.4
MS.gene44432.t1 AT1G26960 41.964 112 65 0 119 230 63 174 2.17e-19 85.1
MS.gene44432.t1 AT5G03790 35.374 147 79 2 127 257 77 223 3.68e-18 81.6
MS.gene44432.t1 AT5G65310 45.000 100 48 1 122 214 67 166 1.57e-16 78.2
MS.gene44432.t1 AT3G01470 45.161 93 44 1 127 212 68 160 1.78e-16 77.4
MS.gene44432.t1 AT5G65310 45.000 100 48 1 122 214 49 148 1.94e-16 77.8
MS.gene44432.t1 AT2G18550 44.000 100 56 0 114 213 48 147 7.98e-16 74.7
MS.gene44432.t1 AT5G03790 47.253 91 48 0 127 217 77 167 9.56e-16 73.9
MS.gene44432.t1 AT5G15150 42.478 113 56 3 113 216 96 208 1.30e-15 75.9
MS.gene44432.t1 AT4G36740 44.681 94 52 0 120 213 49 142 2.37e-15 73.6
MS.gene44432.t1 AT4G36740 44.681 94 52 0 120 213 48 141 2.40e-15 73.6
MS.gene44432.t1 AT4G40060 44.330 97 47 1 125 214 57 153 2.51e-15 74.7
MS.gene44432.t1 AT3G01220 43.269 104 53 2 119 216 77 180 2.86e-15 74.3
MS.gene44432.t1 AT1G27045 46.875 96 44 1 127 215 68 163 4.71e-15 73.2
MS.gene44432.t1 AT1G27045 40.909 132 62 3 127 250 68 191 5.84e-15 72.4
MS.gene44432.t1 AT1G27045 57.576 66 28 0 127 192 17 82 8.74e-15 70.9
MS.gene44432.t1 AT1G27045 57.576 66 28 0 127 192 25 90 9.52e-15 71.2
MS.gene44432.t1 AT1G27045 57.576 66 28 0 127 192 25 90 9.52e-15 71.2
MS.gene44432.t1 AT2G36610 40.816 98 50 1 126 215 70 167 3.36e-14 69.7
MS.gene44432.t1 AT2G22430 43.750 96 50 1 125 216 60 155 7.44e-14 70.5
MS.gene44432.t1 AT2G46680 43.011 93 49 1 130 218 35 127 1.54e-13 68.9
MS.gene44432.t1 AT2G46680 41.111 90 53 0 130 219 35 124 1.55e-13 68.9
MS.gene44432.t1 AT5G06710 51.163 86 25 4 76 151 136 214 4.06e-12 64.7
MS.gene44432.t1 AT5G06710 51.163 86 25 4 76 151 136 214 4.06e-12 64.7
MS.gene44432.t1 AT3G61890 38.947 95 44 1 130 210 33 127 2.70e-11 62.4
MS.gene44432.t1 AT5G66700 44.872 78 43 0 115 192 59 136 6.51e-11 61.2
MS.gene44432.t1 AT1G79840 43.373 83 46 1 126 207 102 184 9.69e-11 62.4

Find 59 sgRNAs with CRISPR-Local

Find 87 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTAGAGAAATTGCTCTTAT+TGG 0.187884 8.1:+24847842 None:intergenic
CTAGGTGGTGGTGGTGTTAA+TGG 0.243245 8.1:-24847873 MS.gene44432:CDS
TCAGGCCTTCAACTTATTCT+AGG 0.257483 8.1:-24849060 MS.gene44432:CDS
ATGTTTCACAACATTTCTTT+AGG 0.284664 8.1:+24848018 None:intergenic
AAAGGAGGTGCAAGAATTAA+AGG 0.295896 8.1:-24847970 MS.gene44432:CDS
GGTACCTGGCTCTACGGTTC+TGG 0.298360 8.1:+24848479 None:intergenic
TTATGATTACTTGAGGAATA+AGG 0.345806 8.1:+24848979 None:intergenic
AAGCATAGCAGATTGATCTT+TGG 0.351274 8.1:+24848699 None:intergenic
GGATGGTGGTGTGTCTTGTT+TGG 0.360529 8.1:+24849020 None:intergenic
CACATGAAGGGCACATAGTA+AGG 0.379041 8.1:+24847901 None:intergenic
TGTTAGCAGTGAATTAGAAA+TGG 0.445208 8.1:-24848809 MS.gene44432:CDS
AGGCTTTGTAACGTTGTTGT+TGG 0.454137 8.1:+24848999 None:intergenic
AAACATTAACAGAAGAGAAT+AGG 0.467293 8.1:-24848001 MS.gene44432:CDS
GCTGAACCATCTTTAACGTT+GGG 0.469771 8.1:-24848946 MS.gene44432:CDS
TTCCTCTTTCTCTAGTGGGA+GGG 0.480454 8.1:-24848848 MS.gene44432:CDS
TTGTTTCCTCTTTCTCTAGT+GGG 0.482881 8.1:-24848852 MS.gene44432:CDS
AGCTGAACCATCTTTAACGT+TGG 0.482898 8.1:-24848947 MS.gene44432:CDS
CACCCTCCCACTAGAGAAAG+AGG 0.485237 8.1:+24848846 None:intergenic
CTAAGCCTAGAATAAGTTGA+AGG 0.488952 8.1:+24849055 None:intergenic
TTCTTCATAGTAACTCTTGG+TGG 0.498912 8.1:+24848918 None:intergenic
AGGTGTTAGATTTAACTCTC+TGG 0.498987 8.1:+24848522 None:intergenic
CACCTCGACAAGTTGAGGTC+TGG 0.514656 8.1:-24848504 MS.gene44432:CDS
AGGTTCTTCATAGTAACTCT+TGG 0.520099 8.1:+24848915 None:intergenic
GTGAAGGGATTGTAAAAGTG+AGG 0.521344 8.1:+24847819 None:intergenic
GGTTCCAGAACCGTAGAGCC+AGG 0.526669 8.1:-24848483 MS.gene44432:intron
GTTGTTTCCTCTTTCTCTAG+TGG 0.529933 8.1:-24848853 MS.gene44432:CDS
TTTCCTCTTTCTCTAGTGGG+AGG 0.530703 8.1:-24848849 MS.gene44432:CDS
CCACCTAGTCTCTCACATGA+AGG 0.532667 8.1:+24847888 None:intergenic
GTAAGGGTAGCAGCAGGCAT+AGG 0.543191 8.1:+24847918 None:intergenic
TTTGTAACGTTGTTGTTGGA+TGG 0.545023 8.1:+24849003 None:intergenic
GATAAACCCAACGTTAAAGA+TGG 0.545369 8.1:+24848940 None:intergenic
TGTTTAGGTACCTGGCTCTA+CGG 0.545452 8.1:+24848473 None:intergenic
AGAGAATAGGAGGCTACAAA+AGG 0.550932 8.1:-24847988 MS.gene44432:CDS
AGAAATGGAAACGACGGAGA+TGG 0.553541 8.1:-24848794 MS.gene44432:CDS
AGCAGGCATAGGCATATACA+AGG 0.565140 8.1:+24847929 None:intergenic
CACATAGTAAGGGTAGCAGC+AGG 0.565288 8.1:+24847912 None:intergenic
AAAGCTGAAGCAAACAGAAG+TGG 0.566126 8.1:-24848051 MS.gene44432:CDS
TGTGAGAGACTAGGTGGTGG+TGG 0.571619 8.1:-24847882 MS.gene44432:CDS
TCTAACACCTCGACAAGTTG+AGG 0.578186 8.1:-24848509 MS.gene44432:CDS
CATTAACAGAAGAGAATAGG+AGG 0.587793 8.1:-24847998 MS.gene44432:CDS
ATAGTTGTTATGATTACTTG+AGG 0.592747 8.1:+24848972 None:intergenic
AAGACGGTGCCACTGCAGCT+AGG 0.595899 8.1:-24848738 MS.gene44432:CDS
AAGCTTCTTCCTAGCTGCAG+TGG 0.601402 8.1:+24848729 None:intergenic
CAAGATGCTAGTAACAACTC+AGG 0.601537 8.1:-24849078 MS.gene44432:CDS
GTAACGTTGTTGTTGGATGG+TGG 0.602624 8.1:+24849006 None:intergenic
GAATAGGAGGCTACAAAAGG+AGG 0.603538 8.1:-24847985 MS.gene44432:CDS
GGTGGTGGTGGTGTTAATGG+TGG 0.605462 8.1:-24847870 MS.gene44432:CDS
TGCTGCTGAAGAATTTGTGA+AGG 0.611202 8.1:+24847803 None:intergenic
CACCTAGTCTCTCACATGAA+GGG 0.617037 8.1:+24847889 None:intergenic
ACATGAAGGGCACATAGTAA+GGG 0.623367 8.1:+24847902 None:intergenic
AACCAGACCTCAACTTGTCG+AGG 0.626268 8.1:+24848502 None:intergenic
GAGGAAACAACGCTGTGATG+AGG 0.631204 8.1:+24848865 None:intergenic
TGAATTAGAAATGGAAACGA+CGG 0.634393 8.1:-24848800 MS.gene44432:CDS
CCTTCATGTGAGAGACTAGG+TGG 0.665742 8.1:-24847888 MS.gene44432:CDS
TCATGTGAGAGACTAGGTGG+TGG 0.669612 8.1:-24847885 MS.gene44432:CDS
GCTGCTGAAGAATTTGTGAA+GGG 0.673398 8.1:+24847804 None:intergenic
ATCAGCGACGAAGATGAAGA+CGG 0.679700 8.1:-24848754 MS.gene44432:CDS
TGCCCTTCATGTGAGAGACT+AGG 0.694086 8.1:-24847891 MS.gene44432:CDS
GCAGGCATAGGCATATACAA+GGG 0.751200 8.1:+24847930 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAAAAATTTGATAAATAAA+TGG + chr8.1:24848316-24848335 None:intergenic 10.0%
!! TTATGTATATATTTATGTTT+AGG + chr8.1:24848435-24848454 None:intergenic 10.0%
!!! TGTTATATTAACATTATTTT+TGG - chr8.1:24848792-24848811 MS.gene44432:CDS 10.0%
!! AATTAAATTAAACTCAACTA+TGG - chr8.1:24848475-24848494 MS.gene44432:intron 15.0%
!! ATTATCTTCAGATTAATTAA+GGG - chr8.1:24848619-24848638 MS.gene44432:intron 15.0%
!! GTACACATATTATAAATTAT+GGG - chr8.1:24848745-24848764 MS.gene44432:CDS 15.0%
!! TATTATCTTCAGATTAATTA+AGG - chr8.1:24848618-24848637 MS.gene44432:intron 15.0%
!!! TATTAACATTATTTTTGGTT+TGG - chr8.1:24848797-24848816 MS.gene44432:CDS 15.0%
!!! TATTTATCAAATTTTTGTCA+TGG - chr8.1:24848318-24848337 MS.gene44432:intron 15.0%
!! ATCTGAAGATAATATTTCAT+TGG + chr8.1:24848612-24848631 None:intergenic 20.0%
!! ATTTCAATTCAACTTATTCT+GGG + chr8.1:24848695-24848714 None:intergenic 20.0%
!! CGTACACATATTATAAATTA+TGG - chr8.1:24848744-24848763 MS.gene44432:CDS 20.0%
!! TATTTCAATTCAACTTATTC+TGG + chr8.1:24848696-24848715 None:intergenic 20.0%
!!! ATTATTTTTGGTTTGGATTT+TGG - chr8.1:24848804-24848823 MS.gene44432:CDS 20.0%
!!! TTATTTTTGGTTTGGATTTT+GGG - chr8.1:24848805-24848824 MS.gene44432:CDS 20.0%
! AAACATTAACAGAAGAGAAT+AGG - chr8.1:24848889-24848908 MS.gene44432:CDS 25.0%
! ATAGTTGTTATGATTACTTG+AGG + chr8.1:24847921-24847940 None:intergenic 25.0%
! ATGTTTCACAACATTTCTTT+AGG + chr8.1:24848875-24848894 None:intergenic 25.0%
! CCATTTACAATAGTATGTAT+GGG + chr8.1:24848668-24848687 None:intergenic 25.0%
! GAGATTATGATTATGATTAC+AGG + chr8.1:24848250-24848269 None:intergenic 25.0%
! GGTGATATATGATATTTATG+TGG + chr8.1:24848647-24848666 None:intergenic 25.0%
! TACATACTATTGTAAATGGA+TGG - chr8.1:24848669-24848688 MS.gene44432:CDS 25.0%
! TATATTTATGTTTAGGTACC+TGG + chr8.1:24848428-24848447 None:intergenic 25.0%
! TCCATTTACAATAGTATGTA+TGG + chr8.1:24848669-24848688 None:intergenic 25.0%
! TTATGATTACTTGAGGAATA+AGG + chr8.1:24847914-24847933 None:intergenic 25.0%
!!! TCAACTATGGTTTTAAATTG+CGG - chr8.1:24848488-24848507 MS.gene44432:CDS 25.0%
ACTTATATTGCAGTACACAA+CGG + chr8.1:24848582-24848601 None:intergenic 30.0%
CCCATACATACTATTGTAAA+TGG - chr8.1:24848665-24848684 MS.gene44432:CDS 30.0%
CTTAGAGAAATTGCTCTTAT+TGG + chr8.1:24849051-24849070 None:intergenic 30.0%
GTTTGTGTAGAAAAATCAAG+AGG + chr8.1:24847998-24848017 None:intergenic 30.0%
TGAATTAGAAATGGAAACGA+CGG - chr8.1:24848090-24848109 MS.gene44432:intron 30.0%
TGTTAGCAGTGAATTAGAAA+TGG - chr8.1:24848081-24848100 MS.gene44432:intron 30.0%
AAGCATAGCAGATTGATCTT+TGG + chr8.1:24848194-24848213 None:intergenic 35.0%
AGGTGTTAGATTTAACTCTC+TGG + chr8.1:24848371-24848390 None:intergenic 35.0%
AGGTTCTTCATAGTAACTCT+TGG + chr8.1:24847978-24847997 None:intergenic 35.0%
CATTAACAGAAGAGAATAGG+AGG - chr8.1:24848892-24848911 MS.gene44432:CDS 35.0%
GATAAACCCAACGTTAAAGA+TGG + chr8.1:24847953-24847972 None:intergenic 35.0%
TTCTTCATAGTAACTCTTGG+TGG + chr8.1:24847975-24847994 None:intergenic 35.0%
TTGTTTCCTCTTTCTCTAGT+GGG - chr8.1:24848038-24848057 MS.gene44432:CDS 35.0%
! AAAGGAGGTGCAAGAATTAA+AGG - chr8.1:24848920-24848939 MS.gene44432:CDS 35.0%
! CTAAGCCTAGAATAAGTTGA+AGG + chr8.1:24847838-24847857 None:intergenic 35.0%
! TAAATTGCGGTTGCAGTTTT+TGG - chr8.1:24848501-24848520 MS.gene44432:CDS 35.0%
! TTTGTAACGTTGTTGTTGGA+TGG + chr8.1:24847890-24847909 None:intergenic 35.0%
AAAGCTGAAGCAAACAGAAG+TGG - chr8.1:24848839-24848858 MS.gene44432:CDS 40.0%
AGAGAATAGGAGGCTACAAA+AGG - chr8.1:24848902-24848921 MS.gene44432:CDS 40.0%
AGCTGAACCATCTTTAACGT+TGG - chr8.1:24847943-24847962 MS.gene44432:CDS 40.0%
CAAGATGCTAGTAACAACTC+AGG - chr8.1:24847812-24847831 MS.gene44432:CDS 40.0%
GCTGAACCATCTTTAACGTT+GGG - chr8.1:24847944-24847963 MS.gene44432:CDS 40.0%
GCTGCTGAAGAATTTGTGAA+GGG + chr8.1:24849089-24849108 None:intergenic 40.0%
GTGAAGGGATTGTAAAAGTG+AGG + chr8.1:24849074-24849093 None:intergenic 40.0%
TCAGGCCTTCAACTTATTCT+AGG - chr8.1:24847830-24847849 MS.gene44432:CDS 40.0%
TGCTGCTGAAGAATTTGTGA+AGG + chr8.1:24849090-24849109 None:intergenic 40.0%
! ACATGAAGGGCACATAGTAA+GGG + chr8.1:24848991-24849010 None:intergenic 40.0%
! AGGCTTTGTAACGTTGTTGT+TGG + chr8.1:24847894-24847913 None:intergenic 40.0%
! GTTGTTTCCTCTTTCTCTAG+TGG - chr8.1:24848037-24848056 MS.gene44432:CDS 40.0%
AGAAATGGAAACGACGGAGA+TGG - chr8.1:24848096-24848115 MS.gene44432:intron 45.0%
AGCAGGCATAGGCATATACA+AGG + chr8.1:24848964-24848983 None:intergenic 45.0%
ATCAGCGACGAAGATGAAGA+CGG - chr8.1:24848136-24848155 MS.gene44432:intron 45.0%
CACCTAGTCTCTCACATGAA+GGG + chr8.1:24849004-24849023 None:intergenic 45.0%
GAATAGGAGGCTACAAAAGG+AGG - chr8.1:24848905-24848924 MS.gene44432:CDS 45.0%
GCAGGCATAGGCATATACAA+GGG + chr8.1:24848963-24848982 None:intergenic 45.0%
TCTAACACCTCGACAAGTTG+AGG - chr8.1:24848381-24848400 MS.gene44432:intron 45.0%
TTCCTCTTTCTCTAGTGGGA+GGG - chr8.1:24848042-24848061 MS.gene44432:CDS 45.0%
TTTCCTCTTTCTCTAGTGGG+AGG - chr8.1:24848041-24848060 MS.gene44432:CDS 45.0%
! CACATGAAGGGCACATAGTA+AGG + chr8.1:24848992-24849011 None:intergenic 45.0%
! GCAGTACACAACGGTTTTTG+AGG + chr8.1:24848573-24848592 None:intergenic 45.0%
! GTAACGTTGTTGTTGGATGG+TGG + chr8.1:24847887-24847906 None:intergenic 45.0%
!! ATTGCGGTTGCAGTTTTTGG+TGG - chr8.1:24848504-24848523 MS.gene44432:CDS 45.0%
!! TGTTTAGGTACCTGGCTCTA+CGG + chr8.1:24848420-24848439 None:intergenic 45.0%
AACCAGACCTCAACTTGTCG+AGG + chr8.1:24848391-24848410 None:intergenic 50.0%
AAGCTTCTTCCTAGCTGCAG+TGG + chr8.1:24848164-24848183 None:intergenic 50.0%
CACATAGTAAGGGTAGCAGC+AGG + chr8.1:24848981-24849000 None:intergenic 50.0%
CCACCTAGTCTCTCACATGA+AGG + chr8.1:24849005-24849024 None:intergenic 50.0%
CCTTCATGTGAGAGACTAGG+TGG - chr8.1:24849002-24849021 MS.gene44432:CDS 50.0%
GAGGAAACAACGCTGTGATG+AGG + chr8.1:24848028-24848047 None:intergenic 50.0%
TCATGTGAGAGACTAGGTGG+TGG - chr8.1:24849005-24849024 MS.gene44432:CDS 50.0%
TGCCCTTCATGTGAGAGACT+AGG - chr8.1:24848999-24849018 MS.gene44432:CDS 50.0%
! GGATGGTGGTGTGTCTTGTT+TGG + chr8.1:24847873-24847892 None:intergenic 50.0%
!! CTAGGTGGTGGTGGTGTTAA+TGG - chr8.1:24849017-24849036 MS.gene44432:CDS 50.0%
CACCCTCCCACTAGAGAAAG+AGG + chr8.1:24848047-24848066 None:intergenic 55.0%
GTAAGGGTAGCAGCAGGCAT+AGG + chr8.1:24848975-24848994 None:intergenic 55.0%
! CACCTCGACAAGTTGAGGTC+TGG - chr8.1:24848386-24848405 MS.gene44432:intron 55.0%
! TGTGAGAGACTAGGTGGTGG+TGG - chr8.1:24849008-24849027 MS.gene44432:CDS 55.0%
!! GGTGGTGGTGGTGTTAATGG+TGG - chr8.1:24849020-24849039 MS.gene44432:CDS 55.0%
GGTTCCAGAACCGTAGAGCC+AGG - chr8.1:24848407-24848426 MS.gene44432:intron 60.0%
!! AAGACGGTGCCACTGCAGCT+AGG - chr8.1:24848152-24848171 MS.gene44432:intron 60.0%
!! GGTACCTGGCTCTACGGTTC+TGG + chr8.1:24848414-24848433 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 24847797 24849115 24847797 ID=MS.gene44432
chr8.1 mRNA 24847797 24849115 24847797 ID=MS.gene44432.t1;Parent=MS.gene44432
chr8.1 exon 24848663 24849115 24848663 ID=MS.gene44432.t1.exon1;Parent=MS.gene44432.t1
chr8.1 CDS 24848663 24849115 24848663 ID=cds.MS.gene44432.t1;Parent=MS.gene44432.t1
chr8.1 exon 24848484 24848563 24848484 ID=MS.gene44432.t1.exon2;Parent=MS.gene44432.t1
chr8.1 CDS 24848484 24848563 24848484 ID=cds.MS.gene44432.t1;Parent=MS.gene44432.t1
chr8.1 exon 24847797 24848076 24847797 ID=MS.gene44432.t1.exon3;Parent=MS.gene44432.t1
chr8.1 CDS 24847797 24848076 24847797 ID=cds.MS.gene44432.t1;Parent=MS.gene44432.t1
Gene Sequence

>MS.gene44432

ATGGGTCTTAATAATCAAGATGCTAGTAACAACTCAGGCCTTCAACTTATTCTAGGCTTAGCTCTTACTCTTACCAAACAAGACACACCACCATCCAACAACAACGTTACAAAGCCTTATTCCTCAAGTAATCATAACAACTATGAAGCTGAACCATCTTTAACGTTGGGTTTATCCACCAAGAGTTACTATGAAGAACCTCTTGATTTTTCTACACAAACAAACTCACCTCATCACAGCGTTGTTTCCTCTTTCTCTAGTGGGAGGGTGAAGAGAGAAAGAGATGTTAGCAGTGAATTAGAAATGGAAACGACGGAGATGGAGAGAGTTTCTTCGAGAATCAGCGACGAAGATGAAGACGGTGCCACTGCAGCTAGGAAGAAGCTTAGACTTACCAAAGATCAATCTGCTATGCTTGAAGAAAGCTTCAAAGAACACAGCACTCTCAATCCTGTAATCATAATCATAATCTCTTTCTATAGTTACATATCTTATTATTATTATTTTCATTTTTTTCCATTTATTTATCAAATTTTTGTCATGGATTTACAGAAACAGAAGCAAGCTTTAGCCAGAGAGTTAAATCTAACACCTCGACAAGTTGAGGTCTGGTTCCAGAACCGTAGAGCCAGGTACCTAAACATAAATATATACATAATATATTCAATTTATAAATGAAATTAAATTAAACTCAACTATGGTTTTAAATTGCGGTTGCAGTTTTTGGTGGAAACTGCAACGACTGCACTATAATTGTGATGTCGTTGCATAAACCTCAAAAACCGTTGTGTACTGCAATATAAGTACTAGAGCCAATGAAATATTATCTTCAGATTAATTAAGGGTACCACATAAATATCATATATCACCCATACATACTATTGTAAATGGATGGCCCAGAATAAGTTGAATTGAAATAATTTTTTTAATCATTATTCATGTATTTACGTACACATATTATAAATTATGGGTTTGATAAATATATGTTAAAAATATGTTATATTAACATTATTTTTGGTTTGGATTTTGGGTGTAACAGAACAAAGCTGAAGCAAACAGAAGTGGATTGTGAGTTCCTAAAGAAATGTTGTGAAACATTAACAGAAGAGAATAGGAGGCTACAAAAGGAGGTGCAAGAATTAAAGGCACTAAAACTAGCACAACCCTTGTATATGCCTATGCCTGCTGCTACCCTTACTATGTGCCCTTCATGTGAGAGACTAGGTGGTGGTGGTGTTAATGGTGGTTCTTCCAATAAGAGCAATTTCTCTAAGCCTCACTTTTACAATCCCTTCACAAATTCTTCAGCAGCATGTTGA
Protein sequence

>MS.gene44432.t1

MGLNNQDASNNSGLQLILGLALTLTKQDTPPSNNNVTKPYSSSNHNNYEAEPSLTLGLSTKSYYEEPLDFSTQTNSPHHSVVSSFSSGRVKRERDVSSELEMETTEMERVSSRISDEDEDGATAARKKLRLTKDQSAMLEESFKEHSTLNPKQKQALARELNLTPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTEENRRLQKEVQELKALKLAQPLYMPMPAATLTMCPSCERLGGGGVNGGSSNKSNFSKPHFYNPFTNSSAAC