Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44460.t1 | XP_013457503.1 | 96.5 | 254 | 7 | 2 | 1 | 252 | 1 | 254 | 1.50E-115 | 426 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44460.t1 | C0HIA3 | 43.7 | 252 | 123 | 5 | 1 | 248 | 1 | 237 | 4.7e-46 | 186.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44460.t1 | G7JE28 | 96.5 | 254 | 7 | 2 | 1 | 252 | 1 | 254 | 1.1e-115 | 426.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene44460.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44460.t1 | MTR_4g097130 | 97.735 | 309 | 5 | 2 | 1 | 307 | 1 | 309 | 0.0 | 598 |
| MS.gene44460.t1 | MTR_4g097130 | 97.727 | 308 | 5 | 2 | 1 | 306 | 1 | 308 | 0.0 | 596 |
| MS.gene44460.t1 | MTR_4g097130 | 96.166 | 313 | 5 | 3 | 1 | 306 | 1 | 313 | 0.0 | 590 |
| MS.gene44460.t1 | MTR_5g015340 | 64.935 | 308 | 91 | 5 | 1 | 306 | 1 | 293 | 4.06e-104 | 306 |
| MS.gene44460.t1 | MTR_5g015340 | 64.935 | 308 | 91 | 5 | 1 | 306 | 1 | 293 | 4.06e-104 | 306 |
| MS.gene44460.t1 | MTR_5g015340 | 65.049 | 309 | 91 | 5 | 1 | 307 | 1 | 294 | 5.68e-104 | 309 |
| MS.gene44460.t1 | MTR_2g031870 | 45.455 | 253 | 120 | 5 | 1 | 249 | 1 | 239 | 1.55e-67 | 213 |
| MS.gene44460.t1 | MTR_8g494240 | 44.706 | 255 | 117 | 5 | 1 | 249 | 1 | 237 | 3.99e-65 | 207 |
| MS.gene44460.t1 | MTR_8g494240 | 44.706 | 255 | 117 | 5 | 1 | 249 | 1 | 237 | 4.12e-65 | 207 |
| MS.gene44460.t1 | MTR_8g494240 | 44.706 | 255 | 117 | 5 | 1 | 249 | 1 | 237 | 1.06e-63 | 206 |
| MS.gene44460.t1 | MTR_8g092810 | 40.602 | 266 | 131 | 6 | 1 | 253 | 1 | 252 | 2.60e-54 | 183 |
| MS.gene44460.t1 | MTR_2g031870 | 37.945 | 253 | 113 | 6 | 1 | 249 | 1 | 213 | 3.61e-46 | 157 |
| MS.gene44460.t1 | MTR_0095s0040 | 49.704 | 169 | 65 | 5 | 1 | 163 | 1 | 155 | 1.77e-42 | 147 |
| MS.gene44460.t1 | MTR_8g018410 | 35.842 | 279 | 154 | 7 | 1 | 279 | 1 | 254 | 5.14e-33 | 123 |
| MS.gene44460.t1 | MTR_1g041765 | 69.048 | 84 | 25 | 1 | 1 | 84 | 1 | 83 | 8.58e-33 | 120 |
| MS.gene44460.t1 | MTR_2g099610 | 37.500 | 216 | 114 | 5 | 1 | 201 | 1 | 210 | 2.99e-32 | 121 |
| MS.gene44460.t1 | MTR_1g088180 | 37.398 | 123 | 68 | 5 | 136 | 255 | 296 | 412 | 1.67e-13 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44460.t1 | AT5G67580 | 50.000 | 310 | 141 | 5 | 1 | 307 | 1 | 299 | 1.56e-70 | 221 |
| MS.gene44460.t1 | AT5G67580 | 50.000 | 310 | 141 | 5 | 1 | 307 | 1 | 299 | 1.56e-70 | 221 |
| MS.gene44460.t1 | AT3G49850 | 46.885 | 305 | 145 | 5 | 1 | 303 | 1 | 290 | 1.80e-64 | 205 |
| MS.gene44460.t1 | AT3G49850 | 46.885 | 305 | 145 | 5 | 1 | 303 | 1 | 290 | 1.80e-64 | 205 |
| MS.gene44460.t1 | AT1G49950 | 43.411 | 258 | 121 | 9 | 1 | 251 | 1 | 240 | 1.53e-61 | 197 |
| MS.gene44460.t1 | AT1G49950 | 43.411 | 258 | 121 | 9 | 1 | 251 | 1 | 240 | 1.53e-61 | 197 |
| MS.gene44460.t1 | AT1G49950 | 43.411 | 258 | 121 | 9 | 1 | 251 | 1 | 240 | 1.53e-61 | 197 |
| MS.gene44460.t1 | AT1G72740 | 32.759 | 290 | 143 | 8 | 1 | 279 | 1 | 249 | 3.77e-30 | 115 |
| MS.gene44460.t1 | AT1G72740 | 31.359 | 287 | 157 | 8 | 1 | 279 | 1 | 255 | 4.77e-28 | 110 |
| MS.gene44460.t1 | AT1G17520 | 36.408 | 206 | 120 | 4 | 1 | 203 | 1 | 198 | 3.04e-27 | 108 |
| MS.gene44460.t1 | AT1G17520 | 36.715 | 207 | 119 | 5 | 1 | 203 | 1 | 199 | 7.12e-26 | 104 |
| MS.gene44460.t1 | AT1G17520 | 36.735 | 196 | 113 | 4 | 1 | 193 | 1 | 188 | 1.19e-25 | 103 |
| MS.gene44460.t1 | AT1G17520 | 37.056 | 197 | 112 | 5 | 1 | 193 | 1 | 189 | 2.58e-24 | 100 |
Find 75 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTAAGCCCCTGACAATTTC+TGG | 0.156688 | 8.1:+25337895 | MS.gene44460:CDS |
| AATGCAAAATGCTTCATATT+TGG | 0.195627 | 8.1:+25340190 | MS.gene44460:CDS |
| TTGATAGCTCTGCCTCAATT+TGG | 0.196523 | 8.1:-25339999 | None:intergenic |
| CAATTGGTTATTGTCAGTTT+TGG | 0.201241 | 8.1:-25337833 | None:intergenic |
| ATTCGAACGCGTACGCAAAA+TGG | 0.224697 | 8.1:-25337594 | None:intergenic |
| GACAATAACTTTCTAAGATT+TGG | 0.247003 | 8.1:-25339048 | None:intergenic |
| CTTCACCTCCGAAGAATCTT+TGG | 0.250581 | 8.1:-25339947 | None:intergenic |
| TGTATTGTGAACAGGATAAA+TGG | 0.295045 | 8.1:+25337737 | MS.gene44460:intron |
| TGATAGCTCTGCCTCAATTT+GGG | 0.303115 | 8.1:-25339998 | None:intergenic |
| ATGTTCCACTACAAATAGTT+AGG | 0.338025 | 8.1:-25337942 | None:intergenic |
| TCAAACACGGGGCTGGAAAA+TGG | 0.376865 | 8.1:+25337540 | MS.gene44460:CDS |
| TCTGCAGTCCATTTCTGCTT+AGG | 0.379164 | 8.1:-25337488 | None:intergenic |
| CTACTTTACTCAAGGCCAAT+TGG | 0.386042 | 8.1:-25337849 | None:intergenic |
| ATATAAATGTCACAGCAATA+TGG | 0.388272 | 8.1:+25337764 | MS.gene44460:CDS |
| CGCCTCCCTAGCTGCTGCTT+CGG | 0.390489 | 8.1:-25340103 | None:intergenic |
| CTACAAATAGTTAGGGGCTT+AGG | 0.415247 | 8.1:-25337934 | None:intergenic |
| ATGTTCCACCAGAAATTGTC+AGG | 0.418565 | 8.1:-25337903 | None:intergenic |
| TTCTCAGAGACCGCTGAACT+TGG | 0.424839 | 8.1:-25339886 | None:intergenic |
| GAAGAAGCGGCGTTGAAAGC+TGG | 0.427269 | 8.1:+25337512 | MS.gene44460:CDS |
| TGGGTGCTCCTAAGCAGAAA+TGG | 0.427716 | 8.1:+25337480 | MS.gene44460:CDS |
| TGCTGCTTCGGCCTGTGCAA+TGG | 0.434469 | 8.1:-25340091 | None:intergenic |
| TATAAATGTCACAGCAATAT+GGG | 0.435123 | 8.1:+25337765 | MS.gene44460:CDS |
| GGGAGACAATAATGTATTAG+AGG | 0.441902 | 8.1:+25338643 | MS.gene44460:CDS |
| AATAACTTTCTAAGATTTGG+TGG | 0.446528 | 8.1:-25339045 | None:intergenic |
| GCAGCCTTGTCAGAACCCTT+TGG | 0.463786 | 8.1:-25338686 | None:intergenic |
| AGCGAGGTCCAAAGATTCTT+CGG | 0.464352 | 8.1:+25339939 | MS.gene44460:CDS |
| AGCTGCAAAAGCAGTTGCAG+AGG | 0.469233 | 8.1:+25340059 | MS.gene44460:CDS |
| CGAAGCAGCAGCTAGGGAGG+CGG | 0.477225 | 8.1:+25340104 | MS.gene44460:CDS |
| CAAAACTGACAATAACCAAT+TGG | 0.479938 | 8.1:+25337834 | MS.gene44460:CDS |
| GGAGTAGTCAAACACGGGGC+TGG | 0.481269 | 8.1:+25337533 | MS.gene44460:CDS |
| CTTTGCAAAAGCAGCGATGA+AGG | 0.481859 | 8.1:+25340161 | MS.gene44460:CDS |
| ACAGGCCGAAGCAGCAGCTA+GGG | 0.483254 | 8.1:+25340098 | MS.gene44460:CDS |
| GGCCGAAGCAGCAGCTAGGG+AGG | 0.499766 | 8.1:+25340101 | MS.gene44460:CDS |
| TGTTCCACTACAAATAGTTA+GGG | 0.500173 | 8.1:-25337941 | None:intergenic |
| CACAGGCCGAAGCAGCAGCT+AGG | 0.511915 | 8.1:+25340097 | MS.gene44460:CDS |
| TGCCATTGCTTCTTACATAG+AGG | 0.516855 | 8.1:+25338706 | MS.gene44460:CDS |
| GTCAATATGAAGGAGCCAAA+GGG | 0.526790 | 8.1:+25338671 | MS.gene44460:CDS |
| GTTCAAAAGAACAAGTATCA+AGG | 0.540828 | 8.1:+25337977 | MS.gene44460:CDS |
| CCTTTCAAAATCCCAAATTG+AGG | 0.542802 | 8.1:+25339987 | MS.gene44460:CDS |
| TACCTCTATGTAAGAAGCAA+TGG | 0.545469 | 8.1:-25338708 | None:intergenic |
| TCACAGCAATATGGGGATCC+CGG | 0.546612 | 8.1:+25337773 | MS.gene44460:CDS |
| GGCAGAAGTTGCCATTGCAC+AGG | 0.551573 | 8.1:+25340080 | MS.gene44460:CDS |
| CGCAAAATGGAACTGAACTC+AGG | 0.555443 | 8.1:-25337581 | None:intergenic |
| AAGCTCTTCTCTGATGCTTG+TGG | 0.556765 | 8.1:+25339915 | MS.gene44460:CDS |
| TTTCTGCTTAGGAGCACCCA+TGG | 0.559262 | 8.1:-25337477 | None:intergenic |
| AGAGGCTATTGTCAATATGA+AGG | 0.562785 | 8.1:+25338661 | MS.gene44460:CDS |
| CTCTGATGCTTGTGGAAGCG+AGG | 0.566860 | 8.1:+25339923 | MS.gene44460:CDS |
| TGTCAATATGAAGGAGCCAA+AGG | 0.567981 | 8.1:+25338670 | MS.gene44460:CDS |
| GTCAGCAAAATTGCAGCAGA+TGG | 0.568574 | 8.1:+25339068 | MS.gene44460:CDS |
| GACAAGTGGCAAAATAGTCC+AGG | 0.570447 | 8.1:+25339092 | MS.gene44460:CDS |
| AAAATGGCGCACAATACTCA+TGG | 0.571706 | 8.1:+25337556 | MS.gene44460:CDS |
| TCAGCGGTCTCTGAGAAAAG+AGG | 0.571845 | 8.1:+25339892 | MS.gene44460:CDS |
| ACGTTGAACTACTTTACTCA+AGG | 0.573317 | 8.1:-25337857 | None:intergenic |
| GGCAGAGCTATCAAAAGTGA+GGG | 0.588740 | 8.1:+25340008 | MS.gene44460:CDS |
| CAAAATTATGCCAAGTTCAG+CGG | 0.601681 | 8.1:+25339876 | MS.gene44460:CDS |
| AAGCCCCTAACTATTTGTAG+TGG | 0.611891 | 8.1:+25337937 | MS.gene44460:CDS |
| GCGTTCGAATGTAGATCTCA+AGG | 0.619214 | 8.1:+25337607 | MS.gene44460:CDS |
| AAGCTGGAGTAGTCAAACAC+GGG | 0.628346 | 8.1:+25337528 | MS.gene44460:CDS |
| AGGCAGAGCTATCAAAAGTG+AGG | 0.628730 | 8.1:+25340007 | MS.gene44460:CDS |
| GATTGCAGAAGCTGAAGCTG+AGG | 0.636628 | 8.1:+25340128 | MS.gene44460:CDS |
| GGGGATGTCAGCTCAAGAGG+CGG | 0.637055 | 8.1:+25340029 | MS.gene44460:CDS |
| AAGCCCCTGACAATTTCTGG+TGG | 0.637720 | 8.1:+25337898 | MS.gene44460:CDS |
| GGAGCCAAAGGGTTCTGACA+AGG | 0.637821 | 8.1:+25338682 | MS.gene44460:CDS |
| TTGCAGCAGATGGTGACAAG+TGG | 0.648634 | 8.1:+25339078 | MS.gene44460:CDS |
| ATAAATGTCACAGCAATATG+GGG | 0.648999 | 8.1:+25337766 | MS.gene44460:CDS |
| TGTTCCACCAGAAATTGTCA+GGG | 0.649357 | 8.1:-25337902 | None:intergenic |
| ATGGACTGCAGAAGAAGAAG+CGG | 0.652524 | 8.1:+25337499 | MS.gene44460:CDS |
| ATTGTGAACAGGATAAATGG+AGG | 0.664041 | 8.1:+25337740 | MS.gene44460:intron |
| CAGAGCTATCAAAAGTGAGG+GGG | 0.676061 | 8.1:+25340010 | MS.gene44460:CDS |
| AAAGCTGGAGTAGTCAAACA+CGG | 0.681254 | 8.1:+25337527 | MS.gene44460:CDS |
| GTTCCACTACAAATAGTTAG+GGG | 0.682877 | 8.1:-25337940 | None:intergenic |
| GCAGAGCTATCAAAAGTGAG+GGG | 0.684532 | 8.1:+25340009 | MS.gene44460:CDS |
| GTTCCACCAGAAATTGTCAG+GGG | 0.692592 | 8.1:-25337901 | None:intergenic |
| GAGGTCCAAAGATTCTTCGG+AGG | 0.716472 | 8.1:+25339942 | MS.gene44460:CDS |
| AGCTGGAGTAGTCAAACACG+GGG | 0.727088 | 8.1:+25337529 | MS.gene44460:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATTAATTGTTACCTATA+AGG | + | chr8.1:25338370-25338389 | MS.gene44460:intron | 15.0% |
| !! | AAAAAATTCAGATTCAAACT+AGG | - | chr8.1:25338215-25338234 | None:intergenic | 20.0% |
| !! | AATAAATTATTTGATCTTGC+TGG | + | chr8.1:25339626-25339645 | MS.gene44460:intron | 20.0% |
| !! | CAATTCAAATAAAACTATCA+CGG | - | chr8.1:25339768-25339787 | None:intergenic | 20.0% |
| !! | GTTGACAATGATAAATAAAT+TGG | + | chr8.1:25339668-25339687 | MS.gene44460:intron | 20.0% |
| !! | TAAGCATGTTGAAAATATAA+GGG | + | chr8.1:25338338-25338357 | MS.gene44460:intron | 20.0% |
| !! | TCTATTCATTTGTGAAAATT+TGG | - | chr8.1:25338185-25338204 | None:intergenic | 20.0% |
| !!! | GTTTTTCTTATAGTTTTTCT+AGG | - | chr8.1:25339372-25339391 | None:intergenic | 20.0% |
| ! | AAGCATGTTGAAAATATAAG+GGG | + | chr8.1:25338339-25338358 | MS.gene44460:intron | 25.0% |
| ! | AATGCAAAATGCTTCATATT+TGG | + | chr8.1:25340190-25340209 | MS.gene44460:CDS | 25.0% |
| ! | AATTACTTTCAATGCAATGA+CGG | - | chr8.1:25338983-25339002 | None:intergenic | 25.0% |
| ! | ATATAAATGTCACAGCAATA+TGG | + | chr8.1:25337764-25337783 | MS.gene44460:CDS | 25.0% |
| ! | CAACTGAATATAAAATTACC+TGG | - | chr8.1:25339113-25339132 | None:intergenic | 25.0% |
| ! | CCCAACTAATAAACAAAATT+CGG | + | chr8.1:25339797-25339816 | MS.gene44460:intron | 25.0% |
| ! | GTAAGCATGTTGAAAATATA+AGG | + | chr8.1:25338337-25338356 | MS.gene44460:intron | 25.0% |
| ! | TAAAAAAGATGGTAGAAACT+TGG | + | chr8.1:25339250-25339269 | MS.gene44460:intron | 25.0% |
| ! | TATAAATGTCACAGCAATAT+GGG | + | chr8.1:25337765-25337784 | MS.gene44460:CDS | 25.0% |
| ! | TGAAAATATAAGGGGAAAAA+AGG | + | chr8.1:25338347-25338366 | MS.gene44460:intron | 25.0% |
| ! | TTAAAAGTTACCTGTGATTT+AGG | + | chr8.1:25338892-25338911 | MS.gene44460:intron | 25.0% |
| !! | AATTGGTTATTGTCAGTTTT+GGG | - | chr8.1:25337835-25337854 | None:intergenic | 25.0% |
| !! | ACTTTTCATTTCATCTCTAT+AGG | + | chr8.1:25339008-25339027 | MS.gene44460:intron | 25.0% |
| !! | ATGAAACACTTTAGTCTTTA+AGG | - | chr8.1:25339588-25339607 | None:intergenic | 25.0% |
| !! | CAGGTAATTTTATATTCAGT+TGG | + | chr8.1:25339111-25339130 | MS.gene44460:intron | 25.0% |
| !! | TATCTTTATGTATTTCTGCT+AGG | - | chr8.1:25337651-25337670 | None:intergenic | 25.0% |
| !!! | AATAACTTTCTAAGATTTGG+TGG | - | chr8.1:25339048-25339067 | None:intergenic | 25.0% |
| !!! | ACCGAATTTTGTTTATTAGT+TGG | - | chr8.1:25339801-25339820 | None:intergenic | 25.0% |
| !!! | CCGAATTTTGTTTATTAGTT+GGG | - | chr8.1:25339800-25339819 | None:intergenic | 25.0% |
| !!! | GACAATAACTTTCTAAGATT+TGG | - | chr8.1:25339051-25339070 | None:intergenic | 25.0% |
| !!! | TGATTGCATTATGCTTTTTT+GGG | - | chr8.1:25338832-25338851 | None:intergenic | 25.0% |
| ACTAGACCTAATTACTCATA+AGG | - | chr8.1:25338136-25338155 | None:intergenic | 30.0% | |
| AGAAATTATCTCCATGATTG+TGG | + | chr8.1:25338047-25338066 | MS.gene44460:intron | 30.0% | |
| AGGGATATGATAGAACATTA+CGG | + | chr8.1:25339426-25339445 | MS.gene44460:intron | 30.0% | |
| ATAAATGTCACAGCAATATG+GGG | + | chr8.1:25337766-25337785 | MS.gene44460:CDS | 30.0% | |
| ATGTTCCACTACAAATAGTT+AGG | - | chr8.1:25337945-25337964 | None:intergenic | 30.0% | |
| ATTACTTTCAATGCAATGAC+GGG | - | chr8.1:25338982-25339001 | None:intergenic | 30.0% | |
| ATTGACCATGTCTATTACAA+AGG | - | chr8.1:25339544-25339563 | None:intergenic | 30.0% | |
| ATTGTTACCTATAAGGAGTA+AGG | + | chr8.1:25338377-25338396 | MS.gene44460:intron | 30.0% | |
| CAAAACTGACAATAACCAAT+TGG | + | chr8.1:25337834-25337853 | MS.gene44460:CDS | 30.0% | |
| CTAGACCTAATTACTCATAA+GGG | - | chr8.1:25338135-25338154 | None:intergenic | 30.0% | |
| GCTTAGGATGTATTAAATTG+CGG | - | chr8.1:25338573-25338592 | None:intergenic | 30.0% | |
| GGTATGTGATAAGTTTATCA+TGG | + | chr8.1:25339818-25339837 | MS.gene44460:intron | 30.0% | |
| GTAAACCTTTGTAATAGACA+TGG | + | chr8.1:25339536-25339555 | MS.gene44460:intron | 30.0% | |
| GTTCAAAAGAACAAGTATCA+AGG | + | chr8.1:25337977-25337996 | MS.gene44460:CDS | 30.0% | |
| TAGACCTAATTACTCATAAG+GGG | - | chr8.1:25338134-25338153 | None:intergenic | 30.0% | |
| TGGAAGTAATGAACAGAAAA+TGG | + | chr8.1:25339646-25339665 | MS.gene44460:intron | 30.0% | |
| TGTATTGTGAACAGGATAAA+TGG | + | chr8.1:25337737-25337756 | MS.gene44460:intron | 30.0% | |
| TGTTCCACTACAAATAGTTA+GGG | - | chr8.1:25337944-25337963 | None:intergenic | 30.0% | |
| TTGTTACCTATAAGGAGTAA+GGG | + | chr8.1:25338378-25338397 | MS.gene44460:intron | 30.0% | |
| TTTATATTCAGTTGGATGTG+TGG | + | chr8.1:25339119-25339138 | MS.gene44460:intron | 30.0% | |
| TTTCTTATCACAAGCATACA+AGG | - | chr8.1:25338547-25338566 | None:intergenic | 30.0% | |
| ! | ATTGGTTATTGTCAGTTTTG+GGG | - | chr8.1:25337834-25337853 | None:intergenic | 30.0% |
| ! | CAATTGGTTATTGTCAGTTT+TGG | - | chr8.1:25337836-25337855 | None:intergenic | 30.0% |
| ! | GATACTTGTTCTTTTGAACT+AGG | - | chr8.1:25337976-25337995 | None:intergenic | 30.0% |
| ! | TGAGGTACTACAAAAAATGA+AGG | - | chr8.1:25338304-25338323 | None:intergenic | 30.0% |
| ! | TTATTTTCCCCTCTTTACAA+TGG | + | chr8.1:25338802-25338821 | MS.gene44460:intron | 30.0% |
| !!! | CTGATTGCATTATGCTTTTT+TGG | - | chr8.1:25338833-25338852 | None:intergenic | 30.0% |
| !!! | TCTACCATCTTTTTTACGAT+AGG | - | chr8.1:25339246-25339265 | None:intergenic | 30.0% |
| AATAGACATGGTCAATGATC+TGG | + | chr8.1:25339548-25339567 | MS.gene44460:intron | 35.0% | |
| ACGTTGAACTACTTTACTCA+AGG | - | chr8.1:25337860-25337879 | None:intergenic | 35.0% | |
| AGAGGCTATTGTCAATATGA+AGG | + | chr8.1:25338661-25338680 | MS.gene44460:CDS | 35.0% | |
| AGATCTAGAGATCAATGAGT+TGG | + | chr8.1:25339401-25339420 | MS.gene44460:intron | 35.0% | |
| AGCACCTATCGTAAAAAAGA+TGG | + | chr8.1:25339239-25339258 | MS.gene44460:intron | 35.0% | |
| AGTACAAGTAGATCAGATGA+AGG | + | chr8.1:25339317-25339336 | MS.gene44460:intron | 35.0% | |
| ATTGTGAACAGGATAAATGG+AGG | + | chr8.1:25337740-25337759 | MS.gene44460:intron | 35.0% | |
| CAAAATTATGCCAAGTTCAG+CGG | + | chr8.1:25339876-25339895 | MS.gene44460:CDS | 35.0% | |
| CCTTTCAAAATCCCAAATTG+AGG | + | chr8.1:25339987-25340006 | MS.gene44460:CDS | 35.0% | |
| GGGAGACAATAATGTATTAG+AGG | + | chr8.1:25338643-25338662 | MS.gene44460:CDS | 35.0% | |
| GTACAAGTAGATCAGATGAA+GGG | + | chr8.1:25339318-25339337 | MS.gene44460:intron | 35.0% | |
| GTATGCTTTGTATTGTGAAC+AGG | + | chr8.1:25337729-25337748 | MS.gene44460:intron | 35.0% | |
| GTTCCACTACAAATAGTTAG+GGG | - | chr8.1:25337943-25337962 | None:intergenic | 35.0% | |
| TAAGATATGCAGCAAATGCA+TGG | - | chr8.1:25338869-25338888 | None:intergenic | 35.0% | |
| TACACCCCTTATGAGTAATT+AGG | + | chr8.1:25338127-25338146 | MS.gene44460:intron | 35.0% | |
| TACCTCTATGTAAGAAGCAA+TGG | - | chr8.1:25338711-25338730 | None:intergenic | 35.0% | |
| TCAAGATTAAGATGCAGCTT+AGG | - | chr8.1:25338589-25338608 | None:intergenic | 35.0% | |
| TCATTTATAGCACCTTTGTG+AGG | + | chr8.1:25338267-25338286 | MS.gene44460:intron | 35.0% | |
| TGTAAAGAGGGGAAAATAAC+AGG | - | chr8.1:25338801-25338820 | None:intergenic | 35.0% | |
| TTACTTTCAATGCAATGACG+GGG | - | chr8.1:25338981-25339000 | None:intergenic | 35.0% | |
| ! | AAGCATTGTATTGCTAGTAG+TGG | - | chr8.1:25338947-25338966 | None:intergenic | 35.0% |
| ! | AGAGATCAATGAGTTGGATA+GGG | + | chr8.1:25339407-25339426 | MS.gene44460:intron | 35.0% |
| ! | TAGAGATCAATGAGTTGGAT+AGG | + | chr8.1:25339406-25339425 | MS.gene44460:intron | 35.0% |
| !! | AAGCTTTATTCCACTAAGTG+GGG | - | chr8.1:25339475-25339494 | None:intergenic | 35.0% |
| !! | ACAAGCTTTATTCCACTAAG+TGG | - | chr8.1:25339477-25339496 | None:intergenic | 35.0% |
| !! | CAAGCTTTATTCCACTAAGT+GGG | - | chr8.1:25339476-25339495 | None:intergenic | 35.0% |
| !! | CACAAAGGTGCTATAAATGA+AGG | - | chr8.1:25338267-25338286 | None:intergenic | 35.0% |
| !! | CCTCAATTTGGGATTTTGAA+AGG | - | chr8.1:25339990-25340009 | None:intergenic | 35.0% |
| !! | TTGGTTATTGTCAGTTTTGG+GGG | - | chr8.1:25337833-25337852 | None:intergenic | 35.0% |
| AAAATGGCGCACAATACTCA+TGG | + | chr8.1:25337556-25337575 | MS.gene44460:CDS | 40.0% | |
| AAACTTGGCTTAGGTGGTTT+GGG | + | chr8.1:25339265-25339284 | MS.gene44460:intron | 40.0% | |
| AAAGCTGGAGTAGTCAAACA+CGG | + | chr8.1:25337527-25337546 | MS.gene44460:CDS | 40.0% | |
| AAGCCCCTAACTATTTGTAG+TGG | + | chr8.1:25337937-25337956 | MS.gene44460:CDS | 40.0% | |
| AAGGGTTGTCAAATCACTAG+AGG | + | chr8.1:25339336-25339355 | MS.gene44460:intron | 40.0% | |
| AGACCTTGTTAACTGTGCAA+TGG | + | chr8.1:25338435-25338454 | MS.gene44460:intron | 40.0% | |
| AGATGGTAGAAACTTGGCTT+AGG | + | chr8.1:25339256-25339275 | MS.gene44460:intron | 40.0% | |
| AGTTACCTGTGATTTAGGCT+TGG | + | chr8.1:25338897-25338916 | MS.gene44460:intron | 40.0% | |
| ATGTCTTAATGATGGCAGGT+TGG | + | chr8.1:25338622-25338641 | MS.gene44460:intron | 40.0% | |
| ATGTTCCACCAGAAATTGTC+AGG | - | chr8.1:25337906-25337925 | None:intergenic | 40.0% | |
| ATTAAGCCCCTGACAATTTC+TGG | + | chr8.1:25337895-25337914 | MS.gene44460:CDS | 40.0% | |
| CTACAAATAGTTAGGGGCTT+AGG | - | chr8.1:25337937-25337956 | None:intergenic | 40.0% | |
| CTACTTTACTCAAGGCCAAT+TGG | - | chr8.1:25337852-25337871 | None:intergenic | 40.0% | |
| CTTACAGCAAAACTGCTATG+AGG | - | chr8.1:25338322-25338341 | None:intergenic | 40.0% | |
| GAACCATTGCACAGTTAACA+AGG | - | chr8.1:25338441-25338460 | None:intergenic | 40.0% | |
| GCAATGACATTTACGTTGAC+AGG | + | chr8.1:25339840-25339859 | MS.gene44460:intron | 40.0% | |
| GCCATCATTAAGACATGCAA+TGG | - | chr8.1:25338618-25338637 | None:intergenic | 40.0% | |
| GCCATTGCATGTCTTAATGA+TGG | + | chr8.1:25338614-25338633 | MS.gene44460:intron | 40.0% | |
| GTCAATATGAAGGAGCCAAA+GGG | + | chr8.1:25338671-25338690 | MS.gene44460:CDS | 40.0% | |
| TACCTATAAGGAGTAAGGGA+AGG | + | chr8.1:25338382-25338401 | MS.gene44460:intron | 40.0% | |
| TGCCATTGCTTCTTACATAG+AGG | + | chr8.1:25338706-25338725 | MS.gene44460:CDS | 40.0% | |
| TGTCAATATGAAGGAGCCAA+AGG | + | chr8.1:25338670-25338689 | MS.gene44460:CDS | 40.0% | |
| TGTCTTAATGATGGCAGGTT+GGG | + | chr8.1:25338623-25338642 | MS.gene44460:intron | 40.0% | |
| TGTTCCACCAGAAATTGTCA+GGG | - | chr8.1:25337905-25337924 | None:intergenic | 40.0% | |
| TTCCTTCCCTTACTCCTTAT+AGG | - | chr8.1:25338387-25338406 | None:intergenic | 40.0% | |
| TTGCATGTCTTAATGATGGC+AGG | + | chr8.1:25338618-25338637 | MS.gene44460:intron | 40.0% | |
| ! | CTTTTATGTGCAGTCTCACT+TGG | + | chr8.1:25338765-25338784 | MS.gene44460:intron | 40.0% |
| ! | TGATAGCTCTGCCTCAATTT+GGG | - | chr8.1:25340001-25340020 | None:intergenic | 40.0% |
| ! | TTGATAGCTCTGCCTCAATT+TGG | - | chr8.1:25340002-25340021 | None:intergenic | 40.0% |
| AAGCTCTTCTCTGATGCTTG+TGG | + | chr8.1:25339915-25339934 | MS.gene44460:CDS | 45.0% | |
| AAGCTGGAGTAGTCAAACAC+GGG | + | chr8.1:25337528-25337547 | MS.gene44460:CDS | 45.0% | |
| AGAGAGAGAGAGAGAGAATC+GGG | + | chr8.1:25339214-25339233 | MS.gene44460:intron | 45.0% | |
| AGCGAGGTCCAAAGATTCTT+CGG | + | chr8.1:25339939-25339958 | MS.gene44460:CDS | 45.0% | |
| AGGCAGAGCTATCAAAAGTG+AGG | + | chr8.1:25340007-25340026 | MS.gene44460:CDS | 45.0% | |
| ATCTCCATGATTGTGGTGCT+TGG | + | chr8.1:25338054-25338073 | MS.gene44460:intron | 45.0% | |
| ATGCTCCAAGCCTAAATCAC+AGG | - | chr8.1:25338905-25338924 | None:intergenic | 45.0% | |
| ATTCGAACGCGTACGCAAAA+TGG | - | chr8.1:25337597-25337616 | None:intergenic | 45.0% | |
| CAAACCAAGCACCACAATCA+TGG | - | chr8.1:25338061-25338080 | None:intergenic | 45.0% | |
| CAGAGCTATCAAAAGTGAGG+GGG | + | chr8.1:25340010-25340029 | MS.gene44460:CDS | 45.0% | |
| CGCAAAATGGAACTGAACTC+AGG | - | chr8.1:25337584-25337603 | None:intergenic | 45.0% | |
| CTTCACCTCCGAAGAATCTT+TGG | - | chr8.1:25339950-25339969 | None:intergenic | 45.0% | |
| CTTTGCAAAAGCAGCGATGA+AGG | + | chr8.1:25340161-25340180 | MS.gene44460:CDS | 45.0% | |
| GAAACTTGGCTTAGGTGGTT+TGG | + | chr8.1:25339264-25339283 | MS.gene44460:intron | 45.0% | |
| GACAAGTGGCAAAATAGTCC+AGG | + | chr8.1:25339092-25339111 | MS.gene44460:CDS | 45.0% | |
| GAGAGAGAGAGAGAGAGAAT+CGG | + | chr8.1:25339213-25339232 | MS.gene44460:intron | 45.0% | |
| GCAGAGCTATCAAAAGTGAG+GGG | + | chr8.1:25340009-25340028 | MS.gene44460:CDS | 45.0% | |
| GCGTTCGAATGTAGATCTCA+AGG | + | chr8.1:25337607-25337626 | MS.gene44460:CDS | 45.0% | |
| GGCAGAGCTATCAAAAGTGA+GGG | + | chr8.1:25340008-25340027 | MS.gene44460:CDS | 45.0% | |
| GTCAGCAAAATTGCAGCAGA+TGG | + | chr8.1:25339068-25339087 | MS.gene44460:CDS | 45.0% | |
| GTTCCACCAGAAATTGTCAG+GGG | - | chr8.1:25337904-25337923 | None:intergenic | 45.0% | |
| TCTGCAGTCCATTTCTGCTT+AGG | - | chr8.1:25337491-25337510 | None:intergenic | 45.0% | |
| TGGTAGAAACTTGGCTTAGG+TGG | + | chr8.1:25339259-25339278 | MS.gene44460:intron | 45.0% | |
| ! | ATGGACTGCAGAAGAAGAAG+CGG | + | chr8.1:25337499-25337518 | MS.gene44460:CDS | 45.0% |
| ! | TAGCACCTTTGTGAGGTATC+TGG | + | chr8.1:25338274-25338293 | MS.gene44460:intron | 45.0% |
| ! | TGGGTGTGCCATTGTAAAGA+GGG | - | chr8.1:25338813-25338832 | None:intergenic | 45.0% |
| ! | TTGGGTGTGCCATTGTAAAG+AGG | - | chr8.1:25338814-25338833 | None:intergenic | 45.0% |
| !!! | TTATTGTCAGTTTTGGGGGC+TGG | - | chr8.1:25337829-25337848 | None:intergenic | 45.0% |
| ACTAAGTGGGGTCAGCTACA+TGG | - | chr8.1:25339463-25339482 | None:intergenic | 50.0% | |
| AGCTGCAAAAGCAGTTGCAG+AGG | + | chr8.1:25340059-25340078 | MS.gene44460:CDS | 50.0% | |
| AGCTGGAGTAGTCAAACACG+GGG | + | chr8.1:25337529-25337548 | MS.gene44460:CDS | 50.0% | |
| ATGTAGCTGACCCCACTTAG+TGG | + | chr8.1:25339462-25339481 | MS.gene44460:intron | 50.0% | |
| GAGAGAGAGAGAGAGAATCG+GGG | + | chr8.1:25339215-25339234 | MS.gene44460:intron | 50.0% | |
| GAGGTCCAAAGATTCTTCGG+AGG | + | chr8.1:25339942-25339961 | MS.gene44460:CDS | 50.0% | |
| GATCGCCAGATACCTCACAA+AGG | - | chr8.1:25338282-25338301 | None:intergenic | 50.0% | |
| GATTGCAGAAGCTGAAGCTG+AGG | + | chr8.1:25340128-25340147 | MS.gene44460:CDS | 50.0% | |
| TCAAACACGGGGCTGGAAAA+TGG | + | chr8.1:25337540-25337559 | MS.gene44460:CDS | 50.0% | |
| TCACAGCAATATGGGGATCC+CGG | + | chr8.1:25337773-25337792 | MS.gene44460:CDS | 50.0% | |
| TGGGTGCTCCTAAGCAGAAA+TGG | + | chr8.1:25337480-25337499 | MS.gene44460:CDS | 50.0% | |
| TTCTCAGAGACCGCTGAACT+TGG | - | chr8.1:25339889-25339908 | None:intergenic | 50.0% | |
| TTGCAGCAGATGGTGACAAG+TGG | + | chr8.1:25339078-25339097 | MS.gene44460:CDS | 50.0% | |
| ! | AAGCCCCTGACAATTTCTGG+TGG | + | chr8.1:25337898-25337917 | MS.gene44460:CDS | 50.0% |
| ! | GGCAAGTTTTGCTTTCTGCC+GGG | - | chr8.1:25337794-25337813 | None:intergenic | 50.0% |
| ! | GGGCAAGTTTTGCTTTCTGC+CGG | - | chr8.1:25337795-25337814 | None:intergenic | 50.0% |
| ! | GGGTGTGCCATTGTAAAGAG+GGG | - | chr8.1:25338812-25338831 | None:intergenic | 50.0% |
| ! | TCAGCGGTCTCTGAGAAAAG+AGG | + | chr8.1:25339892-25339911 | MS.gene44460:CDS | 50.0% |
| CTCTGATGCTTGTGGAAGCG+AGG | + | chr8.1:25339923-25339942 | MS.gene44460:CDS | 55.0% | |
| GGCAGAAGTTGCCATTGCAC+AGG | + | chr8.1:25340080-25340099 | MS.gene44460:CDS | 55.0% | |
| ! | GAAGAAGCGGCGTTGAAAGC+TGG | + | chr8.1:25337512-25337531 | MS.gene44460:CDS | 55.0% |
| ! | GCAGCCTTGTCAGAACCCTT+TGG | - | chr8.1:25338689-25338708 | None:intergenic | 55.0% |
| ! | GGAGCCAAAGGGTTCTGACA+AGG | + | chr8.1:25338682-25338701 | MS.gene44460:CDS | 55.0% |
| !!! | TGTCAGTTTTGGGGGCTGGA+AGG | - | chr8.1:25337825-25337844 | None:intergenic | 55.0% |
| ACAGGCCGAAGCAGCAGCTA+GGG | + | chr8.1:25340098-25340117 | MS.gene44460:CDS | 60.0% | |
| GAGGGGGATGTCAGCTCAAG+AGG | + | chr8.1:25340026-25340045 | MS.gene44460:CDS | 60.0% | |
| GGAGTAGTCAAACACGGGGC+TGG | + | chr8.1:25337533-25337552 | MS.gene44460:CDS | 60.0% | |
| GGGGATGTCAGCTCAAGAGG+CGG | + | chr8.1:25340029-25340048 | MS.gene44460:CDS | 60.0% | |
| GGGGGCTGGAAGGCTCTTAA+GGG | - | chr8.1:25337815-25337834 | None:intergenic | 60.0% | |
| TGGGGGCTGGAAGGCTCTTA+AGG | - | chr8.1:25337816-25337835 | None:intergenic | 60.0% | |
| ! | TGCTGCTTCGGCCTGTGCAA+TGG | - | chr8.1:25340094-25340113 | None:intergenic | 60.0% |
| CACAGGCCGAAGCAGCAGCT+AGG | + | chr8.1:25340097-25340116 | MS.gene44460:CDS | 65.0% | |
| CGAAGCAGCAGCTAGGGAGG+CGG | + | chr8.1:25340104-25340123 | MS.gene44460:CDS | 65.0% | |
| ! | CGCCTCCCTAGCTGCTGCTT+CGG | - | chr8.1:25340106-25340125 | None:intergenic | 65.0% |
| GGCCGAAGCAGCAGCTAGGG+AGG | + | chr8.1:25340101-25340120 | MS.gene44460:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 25337479 | 25340215 | 25337479 | ID=MS.gene44460 |
| chr8.1 | mRNA | 25337479 | 25340215 | 25337479 | ID=MS.gene44460.t1;Parent=MS.gene44460 |
| chr8.1 | exon | 25337479 | 25337628 | 25337479 | ID=MS.gene44460.t1.exon1;Parent=MS.gene44460.t1 |
| chr8.1 | CDS | 25337479 | 25337628 | 25337479 | ID=cds.MS.gene44460.t1;Parent=MS.gene44460.t1 |
| chr8.1 | exon | 25337751 | 25337998 | 25337751 | ID=MS.gene44460.t1.exon2;Parent=MS.gene44460.t1 |
| chr8.1 | CDS | 25337751 | 25337998 | 25337751 | ID=cds.MS.gene44460.t1;Parent=MS.gene44460.t1 |
| chr8.1 | exon | 25338640 | 25338727 | 25338640 | ID=MS.gene44460.t1.exon3;Parent=MS.gene44460.t1 |
| chr8.1 | CDS | 25338640 | 25338727 | 25338640 | ID=cds.MS.gene44460.t1;Parent=MS.gene44460.t1 |
| chr8.1 | exon | 25339030 | 25339113 | 25339030 | ID=MS.gene44460.t1.exon4;Parent=MS.gene44460.t1 |
| chr8.1 | CDS | 25339030 | 25339113 | 25339030 | ID=cds.MS.gene44460.t1;Parent=MS.gene44460.t1 |
| chr8.1 | exon | 25339862 | 25340215 | 25339862 | ID=MS.gene44460.t1.exon5;Parent=MS.gene44460.t1 |
| chr8.1 | CDS | 25339862 | 25340215 | 25339862 | ID=cds.MS.gene44460.t1;Parent=MS.gene44460.t1 |
| Gene Sequence |
| Protein sequence |
