AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene44479

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene44479.t1 MTR_4g095500 98.652 445 4 1 1 443 25 469 0.0 913
MS.gene44479.t1 MTR_5g015950 68.502 454 125 8 1 443 1 447 0.0 616
MS.gene44479.t1 MTR_3g053270 68.502 454 125 8 1 443 1 447 0.0 616
MS.gene44479.t1 MTR_2g089100 43.488 430 199 5 28 443 45 444 1.64e-121 362
MS.gene44479.t1 MTR_4g097080 29.356 419 243 10 33 443 131 504 1.15e-54 190
MS.gene44479.t1 MTR_5g015490 29.469 414 251 8 35 443 114 491 4.38e-53 185
MS.gene44479.t1 MTR_2g099110 29.508 427 237 12 34 443 73 452 1.28e-48 172
MS.gene44479.t1 MTR_3g089055 27.358 424 264 7 19 441 189 569 5.91e-43 159
MS.gene44479.t1 MTR_3g089055 27.358 424 264 7 19 441 184 564 7.96e-43 159
MS.gene44479.t1 MTR_1g029420 27.073 410 257 7 33 441 223 591 8.67e-42 156
MS.gene44479.t1 MTR_5g097480 27.163 416 251 9 32 441 174 543 5.60e-39 148
MS.gene44479.t1 MTR_4g133660 27.381 420 248 10 32 442 172 543 1.81e-38 146
MS.gene44479.t1 MTR_8g442410 27.119 413 250 12 36 441 156 524 6.54e-37 142
MS.gene44479.t1 MTR_5g094450 25.728 412 266 8 32 441 158 531 2.49e-36 140
MS.gene44479.t1 MTR_3g056110 24.703 421 270 9 23 441 166 541 9.86e-36 139
MS.gene44479.t1 MTR_8g020840 28.276 435 240 13 28 441 164 547 5.01e-35 137
MS.gene44479.t1 MTR_2g082090 25.240 416 259 7 32 441 209 578 6.69e-35 137
MS.gene44479.t1 MTR_7g027190 26.316 418 252 9 35 441 300 672 1.25e-33 134
MS.gene44479.t1 MTR_2g026250 25.728 412 263 9 32 441 225 595 3.47e-31 126
MS.gene44479.t1 MTR_3g065980 25.296 423 243 10 36 441 173 539 1.61e-30 124
MS.gene44479.t1 MTR_4g064150 23.831 449 290 11 3 444 332 735 1.81e-30 125
MS.gene44479.t1 MTR_3g022830 24.091 440 270 10 36 441 26 435 2.36e-30 122
MS.gene44479.t1 MTR_2g097410 23.741 417 273 10 32 444 368 743 6.76e-28 117
MS.gene44479.t1 MTR_4g064180 24.163 418 267 13 32 442 251 625 8.95e-28 116
MS.gene44479.t1 MTR_4g104020 26.168 428 240 14 34 441 148 519 1.56e-27 115
MS.gene44479.t1 MTR_4g076140 24.124 485 286 13 5 441 18 468 4.02e-27 113
MS.gene44479.t1 MTR_4g064120 23.981 417 269 12 32 442 251 625 6.59e-27 114
MS.gene44479.t1 MTR_4g064160 24.524 420 264 12 32 444 313 686 6.93e-27 114
MS.gene44479.t1 MTR_5g009080 23.881 469 286 10 15 441 38 477 6.94e-27 112
MS.gene44479.t1 MTR_4g064200 25.542 415 256 12 35 443 284 651 1.02e-26 113
MS.gene44479.t1 MTR_7g062120 23.684 418 270 9 32 444 369 742 1.28e-26 113
MS.gene44479.t1 MTR_2g097310 23.684 418 268 10 32 444 269 640 1.35e-24 107
MS.gene44479.t1 MTR_6g047750 26.190 420 252 10 31 441 291 661 1.47e-24 107
MS.gene44479.t1 MTR_2g097390 23.326 433 279 11 17 443 257 642 3.72e-23 102
MS.gene44479.t1 MTR_2g097467 22.276 413 273 8 35 444 289 656 1.05e-22 101
MS.gene44479.t1 MTR_2g097350 22.512 422 268 10 32 444 271 642 4.30e-22 99.8
MS.gene44479.t1 MTR_4g102790 21.770 418 274 11 35 444 292 664 1.85e-21 97.8
MS.gene44479.t1 MTR_4g077760 25.882 425 244 16 30 441 188 554 2.54e-21 97.1
MS.gene44479.t1 MTR_2g097473 21.498 414 275 8 35 444 289 656 3.88e-21 96.7
MS.gene44479.t1 MTR_1g069725 24.700 417 241 16 35 441 109 462 9.10e-21 94.7
MS.gene44479.t1 MTR_2g097463 22.464 414 271 9 35 444 290 657 9.96e-21 95.5
MS.gene44479.t1 MTR_7g057230 24.451 319 199 5 128 441 375 656 1.34e-19 92.0
MS.gene44479.t1 MTR_7g074650 23.301 412 251 14 38 443 441 793 7.78e-19 89.7
MS.gene44479.t1 MTR_2g097380 22.660 406 236 10 42 443 231 562 3.98e-18 87.0
MS.gene44479.t1 MTR_1g096030 24.146 439 241 17 35 441 80 458 1.50e-17 85.1
MS.gene44479.t1 MTR_4g076020 22.439 410 248 14 38 443 87 430 4.00e-16 80.5
MS.gene44479.t1 MTR_5g058860 24.941 421 261 16 34 441 118 496 9.82e-16 79.7
MS.gene44479.t1 MTR_8g093070 22.912 419 253 14 35 443 139 497 1.95e-15 78.6
MS.gene44479.t1 MTR_3g072710 23.515 421 269 14 34 441 119 499 2.00e-15 78.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene44479.t1 AT3G49950 56.591 440 146 10 12 444 9 410 2.34e-171 487
MS.gene44479.t1 AT5G67411 55.947 227 73 4 159 383 1 202 1.03e-76 238
MS.gene44479.t1 AT4G37650 29.621 422 251 8 33 443 144 530 5.67e-52 183
MS.gene44479.t1 AT1G21450 25.547 411 263 7 33 441 223 592 5.09e-39 149
MS.gene44479.t1 AT2G04890 26.034 411 255 8 32 441 50 412 2.29e-38 144
MS.gene44479.t1 AT1G50600 25.176 425 269 10 20 441 147 525 1.56e-37 144
MS.gene44479.t1 AT5G48150 26.988 415 246 10 36 441 123 489 2.40e-37 142
MS.gene44479.t1 AT5G48150 26.988 415 246 10 36 441 123 489 2.40e-37 142
MS.gene44479.t1 AT5G48150 26.988 415 246 10 36 441 123 489 2.40e-37 142
MS.gene44479.t1 AT5G48150 26.988 415 246 10 36 441 123 489 2.40e-37 142
MS.gene44479.t1 AT1G50600 25.176 425 269 10 20 441 222 600 2.92e-37 144
MS.gene44479.t1 AT1G50600 25.176 425 269 10 20 441 218 596 3.18e-37 144
MS.gene44479.t1 AT4G17230 26.988 415 257 8 32 443 155 526 5.21e-34 134
MS.gene44479.t1 AT4G17230 26.988 415 257 8 32 443 155 526 5.21e-34 134
MS.gene44479.t1 AT1G50420 25.835 449 264 11 35 441 57 478 1.71e-31 126
MS.gene44479.t1 AT3G03450 25.362 414 248 9 36 441 184 544 1.85e-30 124
MS.gene44479.t1 AT5G17490 24.818 411 252 8 34 441 159 515 2.92e-30 123
MS.gene44479.t1 AT2G29065 26.316 418 261 11 35 444 252 630 8.50e-30 122
MS.gene44479.t1 AT3G46600 25.060 419 260 9 32 443 1 372 1.10e-28 116
MS.gene44479.t1 AT3G46600 25.000 420 261 9 32 444 209 581 7.68e-28 116
MS.gene44479.t1 AT3G46600 25.060 419 260 9 32 443 177 548 8.17e-28 116
MS.gene44479.t1 AT5G52510 23.040 421 269 7 31 441 264 639 1.10e-27 116
MS.gene44479.t1 AT2G29060 24.476 429 264 12 28 444 277 657 3.22e-26 112
MS.gene44479.t1 AT2G29060 24.476 429 264 12 28 444 314 694 3.52e-26 112
MS.gene44479.t1 AT1G07530 23.543 429 282 10 19 443 380 766 5.34e-26 111
MS.gene44479.t1 AT2G01570 23.902 410 254 11 36 441 225 580 5.50e-26 111
MS.gene44479.t1 AT3G13840 26.429 420 242 14 33 441 146 509 1.13e-25 109
MS.gene44479.t1 AT5G59450 23.490 447 290 10 6 444 198 600 4.96e-25 108
MS.gene44479.t1 AT1G14920 23.659 410 255 11 36 441 173 528 3.80e-24 105
MS.gene44479.t1 AT2G37650 23.077 416 271 11 32 443 332 702 1.15e-23 104
MS.gene44479.t1 AT2G37650 23.077 416 271 11 32 443 344 714 1.22e-23 104
MS.gene44479.t1 AT5G41920 25.542 415 243 15 35 441 43 399 5.42e-21 95.1
MS.gene44479.t1 AT1G55580 22.273 440 276 11 32 441 41 444 5.34e-20 92.4
MS.gene44479.t1 AT3G54220 23.971 413 250 15 38 443 296 651 1.07e-19 92.4
MS.gene44479.t1 AT1G63100 22.642 424 264 13 35 441 277 653 4.26e-19 90.5
MS.gene44479.t1 AT5G66770 24.346 382 233 12 34 410 219 549 4.96e-19 90.1
MS.gene44479.t1 AT1G63100 22.642 424 264 13 35 441 252 628 6.22e-19 89.7
MS.gene44479.t1 AT4G08250 25.175 429 242 20 34 441 106 476 2.56e-13 72.0
MS.gene44479.t1 AT3G50650 23.136 389 237 12 64 441 204 541 3.44e-11 65.5

Find 76 sgRNAs with CRISPR-Local

Find 82 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGGTTTGGTAGGCTTATC+TGG 0.192122 8.1:-25724033 None:intergenic
GATCTTTCTTACGACGAATT+AGG 0.234419 8.1:+25724603 MS.gene44479:CDS
TAACACCTTGGCATCGTTTC+GGG 0.237807 8.1:+25724376 MS.gene44479:CDS
CTTTGTTCCCATTTGCCTAT+AGG 0.258304 8.1:-25725146 None:intergenic
GGTCTGCATTTAATTATCTA+TGG 0.266633 8.1:+25724991 MS.gene44479:CDS
GTTCAACGTTTGGTTTATTC+AGG 0.267502 8.1:+25724732 MS.gene44479:CDS
CATATGAGTTTGAATTTGAT+AGG 0.282770 8.1:-25724809 None:intergenic
ACAACTTGGTTAGTAGATTA+AGG 0.285644 8.1:+25724970 MS.gene44479:CDS
CTTCTTTGATTGAACATTTG+AGG 0.307298 8.1:+25724709 MS.gene44479:CDS
CACTTGCTCAACAAATCCTT+TGG 0.324306 8.1:+25724154 MS.gene44479:CDS
AACTTGATTGTTCTTGTTCA+TGG 0.330616 8.1:-25724007 None:intergenic
CACGATTTGTGAGGGCTCTA+AGG 0.339226 8.1:-25724236 None:intergenic
TCCAAAGCTTTAACTACCTT+TGG 0.348338 8.1:+25724066 MS.gene44479:CDS
TTCTTTGATTGAACATTTGA+GGG 0.357439 8.1:+25724710 MS.gene44479:CDS
TTAACACCTTGGCATCGTTT+CGG 0.361682 8.1:+25724375 MS.gene44479:CDS
TAGTTAAAGCTTTGGATGTT+GGG 0.379512 8.1:-25724059 None:intergenic
ATGAACATATTGTGCTTACT+TGG 0.379983 8.1:+25725276 MS.gene44479:CDS
TGAGAATCTGTGTGTATCTA+TGG 0.382234 8.1:-25724325 None:intergenic
AGCTGCTAATGCAGCAATTC+TGG 0.384262 8.1:+25724404 MS.gene44479:CDS
ACATTTGAGGGTTCAACGTT+TGG 0.395244 8.1:+25724722 MS.gene44479:CDS
GGTTTATTCAGGTGAAGCTT+TGG 0.398229 8.1:+25724743 MS.gene44479:CDS
TTGTTTCTTAACGCGCTTCG+AGG 0.401307 8.1:+25724894 MS.gene44479:CDS
ACCAAAGGTAGTTAAAGCTT+TGG 0.401348 8.1:-25724067 None:intergenic
GAATTTGATAGGGTTTCATC+TGG 0.416336 8.1:-25724798 None:intergenic
AAATGTTGAACTAATTAAAC+AGG 0.426121 8.1:-25725335 None:intergenic
ACAAATCGTGCAGCGAAAAC+CGG 0.428781 8.1:+25724249 MS.gene44479:CDS
GTAGTTAAAGCTTTGGATGT+TGG 0.435151 8.1:-25724060 None:intergenic
GGTATGAAGCAGATATTTGT+TGG 0.435178 8.1:+25725069 MS.gene44479:CDS
ACTTGCTCAACAAATCCTTT+GGG 0.443862 8.1:+25724155 MS.gene44479:CDS
GAGTTGAACCTATAGGCAAA+TGG 0.454475 8.1:+25725138 MS.gene44479:CDS
TGATGAACATGCTGCTGGAT+GGG 0.466685 8.1:+25725238 MS.gene44479:CDS
GTTGGGAACCATGGTTTGGT+AGG 0.471948 8.1:-25724042 None:intergenic
TCGTAAGAAAGATCAAGTTT+AGG 0.472515 8.1:-25724594 None:intergenic
GGATGTTGGGAACCATGGTT+TGG 0.473234 8.1:-25724046 None:intergenic
CATTGAGCTAGCTAACTTCG+TGG 0.473787 8.1:+25724350 MS.gene44479:CDS
GATGAACATGCTGCTGGATG+GGG 0.481456 8.1:+25725239 MS.gene44479:CDS
CGACGAATTAGGTTCTAAGT+TGG 0.484399 8.1:+25724614 MS.gene44479:CDS
TGATTTAACTTCAAACAACT+TGG 0.488787 8.1:+25724956 MS.gene44479:CDS
GTTGAGAGAGTTGAACCTAT+AGG 0.489058 8.1:+25725131 MS.gene44479:CDS
GCGATAGCATCGATTAATGT+AGG 0.493202 8.1:-25724492 None:intergenic
TTGAGCAAGTGTTACATCGT+TGG 0.495134 8.1:-25724142 None:intergenic
GTTTCTTCAAGTTACACAAA+TGG 0.496382 8.1:+25724681 MS.gene44479:CDS
AGTTGAACCTATAGGCAAAT+GGG 0.497812 8.1:+25725139 MS.gene44479:CDS
TCTACTAAAATAACAAGTGT+TGG 0.502927 8.1:-25724924 None:intergenic
ATGCTTGATGAACATGCTGC+TGG 0.503248 8.1:+25725233 MS.gene44479:CDS
CTAAGTTGGTGAATTTCGCT+AGG 0.512357 8.1:+25724628 MS.gene44479:CDS
CATATTGTGCTTACTTGGAA+AGG 0.528509 8.1:+25725281 MS.gene44479:CDS
ATATGAGTTTGAATTTGATA+GGG 0.529498 8.1:-25724808 None:intergenic
AATGTGTCCACAGTATCATA+AGG 0.533273 8.1:-25725017 None:intergenic
TTTCGCTGCACGATTTGTGA+GGG 0.537309 8.1:-25724244 None:intergenic
GCTTTGGATGTTGGGAACCA+TGG 0.537432 8.1:-25724051 None:intergenic
TTGATGAACATGCTGCTGGA+TGG 0.537625 8.1:+25725237 MS.gene44479:CDS
TCAAGGGATTGGATTTGGTG+AGG 0.546032 8.1:+25725187 MS.gene44479:CDS
TGATCAAAGGAGCAACTTCG+TGG 0.560682 8.1:-25724521 None:intergenic
AGTAGTAGCAGTAGTAGTAG+AGG 0.566106 8.1:-25724847 None:intergenic
TAAGAAAGATCAAGTTTAGG+TGG 0.577766 8.1:-25724591 None:intergenic
TGATTTGAGTCACCATCTTG+TGG 0.581981 8.1:-25724195 None:intergenic
GGATTTGGTGAGGAATGTGT+TGG 0.588738 8.1:+25725197 MS.gene44479:CDS
CTTTGGTGACACAAACTGCA+TGG 0.596433 8.1:+25724083 MS.gene44479:CDS
GCAATTCTGGAAGCAACAGA+AGG 0.597475 8.1:+25724417 MS.gene44479:CDS
TGGTGAGGAATGTGTTGGTG+AGG 0.600886 8.1:+25725202 MS.gene44479:CDS
CATGCAGTTTGTGTCACCAA+AGG 0.602334 8.1:-25724082 None:intergenic
GGTTTGGTAGGCTTATCTGG+TGG 0.612227 8.1:-25724030 None:intergenic
TAGGTCAAGAAACGTGACAT+TGG 0.616837 8.1:+25724647 MS.gene44479:CDS
ACTTCGTGGATTTAACACCT+TGG 0.617259 8.1:+25724364 MS.gene44479:CDS
GAAACAGTGAGTTTGATCAA+AGG 0.618628 8.1:-25724534 None:intergenic
ATGGATACCTTATGATACTG+TGG 0.620359 8.1:+25725010 MS.gene44479:CDS
AACAACATAGCACCACAAGA+TGG 0.622233 8.1:+25724183 MS.gene44479:CDS
GCGTACCCGAAACGATGCCA+AGG 0.644547 8.1:-25724381 None:intergenic
GTGGAAGTAAACAAAGGCAA+TGG 0.648634 8.1:+25725048 MS.gene44479:CDS
CTATGTTGTTGAGAACCCAA+AGG 0.670186 8.1:-25724170 None:intergenic
TGCCTTTGTTTACTTCCACG+TGG 0.684183 8.1:-25725044 None:intergenic
GAGAATGTGATAGCTCATGA+AGG 0.690740 8.1:+25725098 MS.gene44479:CDS
CAGATAAGCCTACCAAACCA+TGG 0.694388 8.1:+25724034 MS.gene44479:CDS
TGCCACGTGGAAGTAAACAA+AGG 0.696360 8.1:+25725042 MS.gene44479:CDS
GTGGACACATTTCTGCCACG+TGG 0.714542 8.1:+25725029 MS.gene44479:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATGAGTTTGAATTTGATA+GGG - chr8.1:25724811-25724830 None:intergenic 20.0%
! CATATGAGTTTGAATTTGAT+AGG - chr8.1:25724812-25724831 None:intergenic 25.0%
! TCTACTAAAATAACAAGTGT+TGG - chr8.1:25724927-25724946 None:intergenic 25.0%
! TTCTTTGATTGAACATTTGA+GGG + chr8.1:25724710-25724729 MS.gene44479:CDS 25.0%
!! ATGAGAAATGCTAATTTTCA+AGG + chr8.1:25725170-25725189 MS.gene44479:CDS 25.0%
!! TGAGAAATGCTAATTTTCAA+GGG + chr8.1:25725171-25725190 MS.gene44479:CDS 25.0%
!! TGATTTAACTTCAAACAACT+TGG + chr8.1:25724956-25724975 MS.gene44479:CDS 25.0%
ACAACTTGGTTAGTAGATTA+AGG + chr8.1:25724970-25724989 MS.gene44479:CDS 30.0%
ATGAACATATTGTGCTTACT+TGG + chr8.1:25725276-25725295 MS.gene44479:CDS 30.0%
CTTCTTTGATTGAACATTTG+AGG + chr8.1:25724709-25724728 MS.gene44479:CDS 30.0%
GGTCTGCATTTAATTATCTA+TGG + chr8.1:25724991-25725010 MS.gene44479:CDS 30.0%
TAAGAAAGATCAAGTTTAGG+TGG - chr8.1:25724594-25724613 None:intergenic 30.0%
TCGTAAGAAAGATCAAGTTT+AGG - chr8.1:25724597-25724616 None:intergenic 30.0%
! GTTTCTTCAAGTTACACAAA+TGG + chr8.1:25724681-25724700 MS.gene44479:CDS 30.0%
! TTGTTCTACTAGCATTTTAC+AGG - chr8.1:25724277-25724296 None:intergenic 30.0%
!! AATGCTAATTTTCAAGGGAT+TGG + chr8.1:25725176-25725195 MS.gene44479:CDS 30.0%
!! AATTTTCAAGGGATTGGATT+TGG + chr8.1:25725182-25725201 MS.gene44479:CDS 30.0%
!! TAGTTAAAGCTTTGGATGTT+GGG - chr8.1:25724062-25724081 None:intergenic 30.0%
AATGTGTCCACAGTATCATA+AGG - chr8.1:25725020-25725039 None:intergenic 35.0%
ACCAAAGGTAGTTAAAGCTT+TGG - chr8.1:25724070-25724089 None:intergenic 35.0%
ACTTGCTCAACAAATCCTTT+GGG + chr8.1:25724155-25724174 MS.gene44479:CDS 35.0%
AGTTGAACCTATAGGCAAAT+GGG + chr8.1:25725139-25725158 MS.gene44479:CDS 35.0%
ATGGATACCTTATGATACTG+TGG + chr8.1:25725010-25725029 MS.gene44479:CDS 35.0%
CATATTGTGCTTACTTGGAA+AGG + chr8.1:25725281-25725300 MS.gene44479:CDS 35.0%
GAAACAGTGAGTTTGATCAA+AGG - chr8.1:25724537-25724556 None:intergenic 35.0%
GAATTTGATAGGGTTTCATC+TGG - chr8.1:25724801-25724820 None:intergenic 35.0%
GATCTTTCTTACGACGAATT+AGG + chr8.1:25724603-25724622 MS.gene44479:CDS 35.0%
GGTATGAAGCAGATATTTGT+TGG + chr8.1:25725069-25725088 MS.gene44479:CDS 35.0%
TGAGAATCTGTGTGTATCTA+TGG - chr8.1:25724328-25724347 None:intergenic 35.0%
! GTTCAACGTTTGGTTTATTC+AGG + chr8.1:25724732-25724751 MS.gene44479:CDS 35.0%
! TACTAGCATTTTACAGGTAC+CGG - chr8.1:25724271-25724290 None:intergenic 35.0%
! TCCAAAGCTTTAACTACCTT+TGG + chr8.1:25724066-25724085 MS.gene44479:CDS 35.0%
!! GTAGTTAAAGCTTTGGATGT+TGG - chr8.1:25724063-25724082 None:intergenic 35.0%
!!! ATGTTGTTTTTGCTTCTGCT+TGG + chr8.1:25725309-25725328 MS.gene44479:CDS 35.0%
AACAACATAGCACCACAAGA+TGG + chr8.1:25724183-25724202 MS.gene44479:CDS 40.0%
ACATTTGAGGGTTCAACGTT+TGG + chr8.1:25724722-25724741 MS.gene44479:CDS 40.0%
ACTTCGTGGATTTAACACCT+TGG + chr8.1:25724364-25724383 MS.gene44479:CDS 40.0%
AGTAGTAGCAGTAGTAGTAG+AGG - chr8.1:25724850-25724869 None:intergenic 40.0%
CACTTGCTCAACAAATCCTT+TGG + chr8.1:25724154-25724173 MS.gene44479:CDS 40.0%
CTATGTTGTTGAGAACCCAA+AGG - chr8.1:25724173-25724192 None:intergenic 40.0%
CTTTGTTCCCATTTGCCTAT+AGG - chr8.1:25725149-25725168 None:intergenic 40.0%
GAGAATGTGATAGCTCATGA+AGG + chr8.1:25725098-25725117 MS.gene44479:CDS 40.0%
GAGTTGAACCTATAGGCAAA+TGG + chr8.1:25725138-25725157 MS.gene44479:CDS 40.0%
GGTTTATTCAGGTGAAGCTT+TGG + chr8.1:25724743-25724762 MS.gene44479:CDS 40.0%
GTGGAAGTAAACAAAGGCAA+TGG + chr8.1:25725048-25725067 MS.gene44479:CDS 40.0%
GTTGAGAGAGTTGAACCTAT+AGG + chr8.1:25725131-25725150 MS.gene44479:CDS 40.0%
TAGGTCAAGAAACGTGACAT+TGG + chr8.1:25724647-25724666 MS.gene44479:CDS 40.0%
TGATTTGAGTCACCATCTTG+TGG - chr8.1:25724198-25724217 None:intergenic 40.0%
TTAACACCTTGGCATCGTTT+CGG + chr8.1:25724375-25724394 MS.gene44479:CDS 40.0%
TTGAGCAAGTGTTACATCGT+TGG - chr8.1:25724145-25724164 None:intergenic 40.0%
!! CGACGAATTAGGTTCTAAGT+TGG + chr8.1:25724614-25724633 MS.gene44479:CDS 40.0%
!! CTAAGTTGGTGAATTTCGCT+AGG + chr8.1:25724628-25724647 MS.gene44479:CDS 40.0%
!! GCGATAGCATCGATTAATGT+AGG - chr8.1:25724495-25724514 None:intergenic 40.0%
ACAAATCGTGCAGCGAAAAC+CGG + chr8.1:25724249-25724268 MS.gene44479:CDS 45.0%
AGCTGCTAATGCAGCAATTC+TGG + chr8.1:25724404-25724423 MS.gene44479:CDS 45.0%
ATGCTTGATGAACATGCTGC+TGG + chr8.1:25725233-25725252 MS.gene44479:CDS 45.0%
CAGATAAGCCTACCAAACCA+TGG + chr8.1:25724034-25724053 MS.gene44479:CDS 45.0%
CATGCAGTTTGTGTCACCAA+AGG - chr8.1:25724085-25724104 None:intergenic 45.0%
CATTGAGCTAGCTAACTTCG+TGG + chr8.1:25724350-25724369 MS.gene44479:CDS 45.0%
TAACACCTTGGCATCGTTTC+GGG + chr8.1:25724376-25724395 MS.gene44479:CDS 45.0%
TGATCAAAGGAGCAACTTCG+TGG - chr8.1:25724524-25724543 None:intergenic 45.0%
TGATGAACATGCTGCTGGAT+GGG + chr8.1:25725238-25725257 MS.gene44479:CDS 45.0%
TGCCACGTGGAAGTAAACAA+AGG + chr8.1:25725042-25725061 MS.gene44479:CDS 45.0%
TTGATGAACATGCTGCTGGA+TGG + chr8.1:25725237-25725256 MS.gene44479:CDS 45.0%
TTTCGCTGCACGATTTGTGA+GGG - chr8.1:25724247-25724266 None:intergenic 45.0%
! CTTTGGTGACACAAACTGCA+TGG + chr8.1:25724083-25724102 MS.gene44479:CDS 45.0%
! GCAATTCTGGAAGCAACAGA+AGG + chr8.1:25724417-25724436 MS.gene44479:CDS 45.0%
! TGCCTTTGTTTACTTCCACG+TGG - chr8.1:25725047-25725066 None:intergenic 45.0%
! TTGTTTCTTAACGCGCTTCG+AGG + chr8.1:25724894-25724913 MS.gene44479:CDS 45.0%
! TTTTCGCTGCACGATTTGTG+AGG - chr8.1:25724248-25724267 None:intergenic 45.0%
!! CATGGTTTGGTAGGCTTATC+TGG - chr8.1:25724036-25724055 None:intergenic 45.0%
!! GGATTTGGTGAGGAATGTGT+TGG + chr8.1:25725197-25725216 MS.gene44479:CDS 45.0%
!! TCAAGGGATTGGATTTGGTG+AGG + chr8.1:25725187-25725206 MS.gene44479:CDS 45.0%
CACGATTTGTGAGGGCTCTA+AGG - chr8.1:25724239-25724258 None:intergenic 50.0%
GATGAACATGCTGCTGGATG+GGG + chr8.1:25725239-25725258 MS.gene44479:CDS 50.0%
GGATGTTGGGAACCATGGTT+TGG - chr8.1:25724049-25724068 None:intergenic 50.0%
! GCTTTGGATGTTGGGAACCA+TGG - chr8.1:25724054-25724073 None:intergenic 50.0%
! GGTTTGGTAGGCTTATCTGG+TGG - chr8.1:25724033-25724052 None:intergenic 50.0%
! TGGTGAGGAATGTGTTGGTG+AGG + chr8.1:25725202-25725221 MS.gene44479:CDS 50.0%
!! GTTGGGAACCATGGTTTGGT+AGG - chr8.1:25724045-25724064 None:intergenic 50.0%
GTGGACACATTTCTGCCACG+TGG + chr8.1:25725029-25725048 MS.gene44479:CDS 55.0%
GCGTACCCGAAACGATGCCA+AGG - chr8.1:25724384-25724403 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 25724009 25725343 25724009 ID=MS.gene44479
chr8.1 mRNA 25724009 25725343 25724009 ID=MS.gene44479.t1;Parent=MS.gene44479
chr8.1 exon 25724009 25725343 25724009 ID=MS.gene44479.t1.exon1;Parent=MS.gene44479.t1
chr8.1 CDS 25724009 25725343 25724009 ID=cds.MS.gene44479.t1;Parent=MS.gene44479.t1
Gene Sequence

>MS.gene44479

ATGAACAAGAACAATCAAGTTCCACCAGATAAGCCTACCAAACCATGGTTCCCAACATCCAAAGCTTTAACTACCTTTGGTGACACAAACTGCATGGAACAGTTACTTGTTCATTGCGCAAACGCAATCGAAACCAACGATGTAACACTTGCTCAACAAATCCTTTGGGTTCTCAACAACATAGCACCACAAGATGGTGACTCAAATCAACGCTTAGCTTATAGTTTCCTTAGAGCCCTCACAAATCGTGCAGCGAAAACCGGTACCTGTAAAATGCTAGTAGAACAAGTTTATTCAAATGCTCATAACAATCTCACCATAGATACACACAGATTCTCAGTCATTGAGCTAGCTAACTTCGTGGATTTAACACCTTGGCATCGTTTCGGGTACGCAGCTGCTAATGCAGCAATTCTGGAAGCAACAGAAGGTTTCTCAGTGATTCATATAGTTGATTTGAGTTCAACTCATTGCATGCAGATTCCTACATTAATCGATGCTATCGCTAATCGCCACGAAGTTGCTCCTTTGATCAAACTCACTGTTTCTGATCATGCTAACAACAACAGTGATCAACTAATTCCACCTAAACTTGATCTTTCTTACGACGAATTAGGTTCTAAGTTGGTGAATTTCGCTAGGTCAAGAAACGTGACATTGGAATTTAGAGTAGTTTCTTCAAGTTACACAAATGGTTTTGCTTCTTTGATTGAACATTTGAGGGTTCAACGTTTGGTTTATTCAGGTGAAGCTTTGGTTATAAATTGTCACATGATGCTTCATTATATTCCAGATGAAACCCTATCAAATTCAAACTCATATGTTTATGATTCTATGTCCTCTACTACTACTGCTACTACTATTACTACTACGTCTCTTAGATCGTTGTTTCTTAACGCGCTTCGAGGTTTAGATCCAACACTTGTTATTTTAGTAGATGAAGATGTTGATTTAACTTCAAACAACTTGGTTAGTAGATTAAGGTCTGCATTTAATTATCTATGGATACCTTATGATACTGTGGACACATTTCTGCCACGTGGAAGTAAACAAAGGCAATGGTATGAAGCAGATATTTGTTGGAAGATTGAGAATGTGATAGCTCATGAAGGTGTTCAAAGAGTTGAGAGAGTTGAACCTATAGGCAAATGGGAACAAAGAATGAGAAATGCTAATTTTCAAGGGATTGGATTTGGTGAGGAATGTGTTGGTGAGGTGAAAGCTATGCTTGATGAACATGCTGCTGGATGGGGATTGAAGAAAGAAGATGAACATATTGTGCTTACTTGGAAAGGACATAATGTTGTTTTTGCTTCTGCTTGGTTACCTGTTTAA
Protein sequence

>MS.gene44479.t1

MNKNNQVPPDKPTKPWFPTSKALTTFGDTNCMEQLLVHCANAIETNDVTLAQQILWVLNNIAPQDGDSNQRLAYSFLRALTNRAAKTGTCKMLVEQVYSNAHNNLTIDTHRFSVIELANFVDLTPWHRFGYAAANAAILEATEGFSVIHIVDLSSTHCMQIPTLIDAIANRHEVAPLIKLTVSDHANNNSDQLIPPKLDLSYDELGSKLVNFARSRNVTLEFRVVSSSYTNGFASLIEHLRVQRLVYSGEALVINCHMMLHYIPDETLSNSNSYVYDSMSSTTTATTITTTSLRSLFLNALRGLDPTLVILVDEDVDLTSNNLVSRLRSAFNYLWIPYDTVDTFLPRGSKQRQWYEADICWKIENVIAHEGVQRVERVEPIGKWEQRMRNANFQGIGFGEECVGEVKAMLDEHAAGWGLKKEDEHIVLTWKGHNVVFASAWLPV