AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene44550

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene44550.t1 MTR_0091s0080 33.883 546 245 7 43 573 28 472 8.15e-107 330
MS.gene44550.t1 MTR_0091s0090 42.512 207 118 1 359 565 4 209 4.74e-55 187
MS.gene44550.t1 MTR_0091s0090 36.946 203 125 1 91 290 3 205 5.16e-40 147
MS.gene44550.t1 MTR_1g052720 34.470 264 146 6 43 283 36 295 8.96e-49 172
MS.gene44550.t1 MTR_1g052720 34.432 273 161 4 308 566 34 302 1.58e-47 168
MS.gene44550.t1 MTR_6g465600 35.714 238 138 4 44 267 40 276 3.32e-44 159
MS.gene44550.t1 MTR_6g465600 36.694 248 142 4 300 533 28 274 3.49e-44 159
MS.gene44550.t1 MTR_0246s0040 34.091 264 156 7 317 579 72 318 1.77e-34 133
MS.gene44550.t1 MTR_0246s0040 33.028 218 133 3 50 267 72 276 1.23e-32 128
MS.gene44550.t1 MTR_1g105780 29.437 231 150 2 49 267 40 269 1.57e-29 118
MS.gene44550.t1 MTR_1g105780 29.302 215 140 2 314 517 38 251 4.79e-26 108
MS.gene44550.t1 MTR_1g105765 29.004 231 151 2 49 267 40 269 4.20e-29 117
MS.gene44550.t1 MTR_1g105765 29.767 215 139 2 314 517 38 251 2.51e-26 108
MS.gene44550.t1 MTR_7g110090 28.632 234 154 2 49 270 39 271 4.90e-29 116
MS.gene44550.t1 MTR_7g110090 27.490 251 165 5 300 536 22 269 5.61e-24 102
MS.gene44550.t1 MTR_3g070250 29.707 239 150 2 49 270 44 281 1.27e-26 110
MS.gene44550.t1 MTR_3g070250 28.512 242 151 6 299 521 26 264 7.61e-20 90.5
MS.gene44550.t1 MTR_4g032560 29.060 234 153 2 49 270 68 300 8.36e-26 108
MS.gene44550.t1 MTR_4g032560 27.881 269 180 5 277 532 28 295 1.01e-21 96.3
MS.gene44550.t1 MTR_1g084880 29.289 239 151 2 49 270 39 276 1.00e-25 107
MS.gene44550.t1 MTR_1g084880 27.511 229 145 3 314 524 37 262 1.50e-18 86.7
MS.gene44550.t1 MTR_3g048970 28.870 239 152 2 49 270 39 276 2.43e-25 106
MS.gene44550.t1 MTR_3g048970 27.948 229 144 4 314 524 37 262 1.28e-18 86.7
MS.gene44550.t1 MTR_4g032580 28.632 234 154 2 49 270 68 300 3.79e-25 106
MS.gene44550.t1 MTR_4g032580 27.881 269 180 5 277 532 28 295 9.35e-22 96.3
MS.gene44550.t1 MTR_3g085990 29.730 222 130 4 49 270 40 235 6.80e-25 103
MS.gene44550.t1 MTR_3g085990 26.316 228 140 6 298 524 21 221 2.64e-15 76.3
MS.gene44550.t1 MTR_1g023840 40.594 101 60 0 434 534 10 110 7.89e-22 92.0
MS.gene44550.t1 MTR_1g023840 44.681 94 52 0 169 262 13 106 1.28e-21 91.7
MS.gene44550.t1 MTR_7g050355 26.022 269 133 3 300 567 28 231 2.99e-21 98.2
MS.gene44550.t1 MTR_1g047540 26.840 231 147 5 49 270 39 256 4.65e-19 90.9
MS.gene44550.t1 MTR_1g047540 27.530 247 155 8 300 536 22 254 8.27e-17 84.0
MS.gene44550.t1 MTR_4g062370 27.165 254 163 6 273 514 8 251 4.73e-19 91.7
MS.gene44550.t1 MTR_4g062370 27.854 219 141 4 49 253 43 258 1.94e-18 89.7
MS.gene44550.t1 MTR_2g100360 25.792 221 142 3 48 249 38 255 4.02e-18 85.1
MS.gene44550.t1 MTR_2g100360 25.221 226 152 3 314 523 37 261 4.23e-16 79.3
MS.gene44550.t1 MTR_5g066660 26.210 248 162 6 50 295 40 268 5.01e-18 85.1
MS.gene44550.t1 MTR_5g066660 26.484 219 140 5 314 530 37 236 1.39e-12 68.9
MS.gene44550.t1 MTR_2g038740 28.272 191 120 1 49 222 39 229 1.38e-17 87.0
MS.gene44550.t1 MTR_2g038740 27.413 259 160 5 314 545 37 294 1.83e-17 86.7
MS.gene44550.t1 MTR_8g064960 41.892 74 42 1 189 262 27 99 2.32e-17 78.6
MS.gene44550.t1 MTR_8g064930 67.347 49 16 0 322 370 2 50 4.70e-17 75.5
MS.gene44550.t1 MTR_3g452180 26.374 182 121 2 101 270 7 187 6.58e-17 79.7
MS.gene44550.t1 MTR_3g452180 25.824 182 119 4 368 536 7 185 7.00e-14 70.9
MS.gene44550.t1 MTR_4g117740 28.571 154 93 2 60 213 61 197 1.49e-16 79.0
MS.gene44550.t1 MTR_4g117740 27.891 147 88 2 331 477 65 193 1.44e-13 70.1
MS.gene44550.t1 MTR_1g087870 25.000 240 153 6 64 282 2 235 5.74e-16 78.6
MS.gene44550.t1 MTR_1g087870 25.114 219 147 4 331 533 2 219 7.40e-16 78.2
MS.gene44550.t1 MTR_6g033605 37.349 83 51 1 189 270 30 112 1.99e-14 70.1
MS.gene44550.t1 MTR_6g033605 32.927 82 54 1 457 537 30 111 1.53e-12 64.7
MS.gene44550.t1 MTR_0521s0010 26.519 181 102 2 50 213 34 200 1.76e-12 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 153 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTCTGTGGCAAGGATTTC+TGG 0.139608 1.2:+80729868 None:intergenic
AAACTGGACCGTCGTGATTT+TGG 0.142859 1.2:-80731568 MS.gene44550:CDS
CAATCCAGCCTTGTTTCTTA+TGG 0.243933 1.2:+80730151 None:intergenic
CGGTCCAGTTTGGATATTAT+TGG 0.264347 1.2:+80731580 None:intergenic
ATCCATGGGTGCAGTGTATT+GGG 0.290852 1.2:+80729643 None:intergenic
CATTAGACATTGCCGTGGTT+TGG 0.309583 1.2:-80731372 MS.gene44550:intron
AAGGAGCAGATCACAATATT+AGG 0.318102 1.2:+80732131 None:intergenic
CTCATCATTGCCATCTCACT+TGG 0.320277 1.2:+80732014 None:intergenic
TGTCACGCTGAATGAACTTT+AGG 0.324413 1.2:+80731271 None:intergenic
ACAAATGCAGATTTGATTAG+AGG 0.328195 1.2:-80731105 MS.gene44550:CDS
ATTAGACATTGCCGTGGTTT+GGG 0.336423 1.2:-80731371 MS.gene44550:intron
CCGAGGTTCATTACTTCATC+AGG 0.337428 1.2:-80730089 MS.gene44550:CDS
GATATATCGGATAATGGATA+TGG 0.364913 1.2:+80730122 None:intergenic
CCTACCACACTTACGATTGT+TGG 0.366401 1.2:-80729846 MS.gene44550:CDS
ACCTCTGCGATGTGCAAATC+AGG 0.368835 1.2:+80729739 None:intergenic
ATCGTCAAGGTCATAAGATT+TGG 0.374229 1.2:+80731649 None:intergenic
ACATCGCAGAGGTTGGTTGC+AGG 0.375369 1.2:-80729729 MS.gene44550:CDS
ACAACAATGATATTGTTGTT+TGG 0.386359 1.2:+80730302 None:intergenic
ACCTCAATCTCATTGTTCAT+TGG 0.386489 1.2:+80731781 None:intergenic
GATATTTATAACATTGTAGA+TGG 0.391221 1.2:-80730221 MS.gene44550:CDS
GACTTCGTCTGATGTCCTCT+CGG 0.399084 1.2:-80730021 MS.gene44550:CDS
TATCCATGGGTGCAGTGTAT+TGG 0.399336 1.2:+80729642 None:intergenic
ACTTCAGACAAGGCTGGTCT+AGG 0.399428 1.2:-80730250 MS.gene44550:CDS
GCAAGGGATATATCGGATAA+TGG 0.403725 1.2:+80730116 None:intergenic
AAAATCACGACGGTCCAGTT+TGG 0.405460 1.2:+80731570 None:intergenic
ATGCTATGATTGGTGGTGAT+TGG 0.409098 1.2:-80729764 MS.gene44550:CDS
TACTCCAATAATATCCAAAC+TGG 0.412151 1.2:-80731584 MS.gene44550:CDS
GGATGTTAACTCAGGATGTT+TGG 0.412783 1.2:-80731494 MS.gene44550:intron
TGCATGCTGCAAATCAGCTT+TGG 0.415627 1.2:+80732083 None:intergenic
CATAAGAAACAAGGCTGGAT+TGG 0.419848 1.2:-80730150 MS.gene44550:CDS
AACCAGACTTTGCCGTGGTA+TGG 0.440028 1.2:-80729897 MS.gene44550:intron
CACTATTGAATTGACTTACT+CGG 0.440432 1.2:-80731515 MS.gene44550:CDS
TTGATTACGTTGGATTTGCC+TGG 0.442541 1.2:-80731302 MS.gene44550:CDS
GTGTACAATTGAAGGTGATT+GGG 0.443885 1.2:-80731238 MS.gene44550:CDS
AAACCTATGGTCAGCGGCAG+TGG 0.455398 1.2:-80729612 MS.gene44550:CDS
GAACTTTAGGTCACATCTCC+AGG 0.457339 1.2:+80731284 None:intergenic
ACTCCTATGTGTACAATTGA+AGG 0.457401 1.2:-80731246 MS.gene44550:CDS
CGGCAACGCAAGGGATATAT+CGG 0.461190 1.2:+80730109 None:intergenic
CAGACATAGTGTCAAATTCA+AGG 0.463743 1.2:+80731982 None:intergenic
GACAAAGATAACACAGTCCT+TGG 0.465488 1.2:-80729678 MS.gene44550:CDS
TGTGTACAATTGAAGGTGAT+TGG 0.473160 1.2:-80731239 MS.gene44550:CDS
TCATCATTGCCATCTCACTT+GGG 0.476104 1.2:+80732015 None:intergenic
TTCGATAGACCTTGCGGTCA+CGG 0.478744 1.2:-80731178 MS.gene44550:CDS
CTGTGCGAAGGGACCTGTCT+CGG 0.479542 1.2:-80730907 MS.gene44550:CDS
TAGGTTTCACATAGTATCCA+TGG 0.490660 1.2:+80729628 None:intergenic
ATGGTCATGAGTAGTAGATT+AGG 0.500878 1.2:+80730170 None:intergenic
TGGGTCTATCTGAAATATGC+GGG 0.502250 1.2:-80730194 MS.gene44550:CDS
TTGGTCCGAACGGCTGTACA+TGG 0.502745 1.2:-80729827 MS.gene44550:CDS
ACAGTGAGGTCCGTATTTAT+CGG 0.505137 1.2:+80731327 None:intergenic
GAAGGGACCTGTCTCGGTTG+AGG 0.505460 1.2:-80730901 MS.gene44550:CDS
GCTTCTATATTCTGTTTCCA+AGG 0.505945 1.2:-80731051 MS.gene44550:intron
TCTGCATTTGTAGACGGCAC+AGG 0.506847 1.2:+80731117 None:intergenic
GACTTCTACAACATTGAGCT+TGG 0.507615 1.2:-80731700 MS.gene44550:CDS
CCTTGCTTGAGTGTGGTCGT+TGG 0.508319 1.2:-80732112 MS.gene44550:CDS
TCACCACCAATCATAGCATA+AGG 0.511917 1.2:+80729768 None:intergenic
ACTTCGTCTGATGTCCTCTC+GGG 0.511997 1.2:-80730020 MS.gene44550:CDS
CATCTCCATGTACAGCCGTT+CGG 0.512529 1.2:+80729822 None:intergenic
GAGTATGCTGGAACAGATGT+CGG 0.514049 1.2:-80729541 MS.gene44550:CDS
AATATGCCTTATGCTATGAT+TGG 0.515256 1.2:-80729774 MS.gene44550:CDS
TCCAATGAACAATGAGATTG+AGG 0.518221 1.2:-80731782 MS.gene44550:CDS
AGCTTTATATGAGGAAAGGT+TGG 0.518511 1.2:-80731735 MS.gene44550:CDS
GATAAGTCCTCAACCGAGAC+AGG 0.525131 1.2:+80730894 None:intergenic
CGACCACTGCCGCTGACCAT+AGG 0.527761 1.2:+80729609 None:intergenic
ACCCCAATACACTGCACCCA+TGG 0.533195 1.2:-80729645 MS.gene44550:CDS
CAGTGGTCGATATGTGTACC+AGG 0.539166 1.2:-80729595 MS.gene44550:CDS
ATTATTGGAGTAGTGTGAGC+AGG 0.541688 1.2:+80731595 None:intergenic
TAATGAACCTCGGCAACGCA+AGG 0.541750 1.2:+80730099 None:intergenic
TGATGTCCTCTCGGGCACTT+TGG 0.543138 1.2:-80730012 MS.gene44550:intron
TTGCAAGGCGAAGAGTATGC+TGG 0.545573 1.2:-80729553 MS.gene44550:CDS
ATAACATTGTAGATGGTGCA+TGG 0.547247 1.2:-80730214 MS.gene44550:CDS
CGAGGTTCATTACTTCATCA+GGG 0.547766 1.2:-80730088 MS.gene44550:CDS
CATATTATTTGCAACAGCGA+AGG 0.553325 1.2:+80729791 None:intergenic
CTTCAGACAAGGCTGGTCTA+GGG 0.553757 1.2:-80730249 MS.gene44550:CDS
CGTGTTACCTCCGATAAATA+CGG 0.556373 1.2:-80731337 MS.gene44550:CDS
AACGACCTTCGACAAACCTA+CGG 0.556786 1.2:+80731199 None:intergenic
AGTATGCTGGAACAGATGTC+GGG 0.557360 1.2:-80729540 MS.gene44550:CDS
CTTACGATTGTTGGTCCGAA+CGG 0.558198 1.2:-80729837 MS.gene44550:CDS
CTCACTGTCATTGATTACGT+TGG 0.558362 1.2:-80731312 MS.gene44550:CDS
TATATGAGGAAAGGTTGGTA+TGG 0.559929 1.2:-80731730 MS.gene44550:CDS
GATTTGCACATCGCAGAGGT+TGG 0.560790 1.2:-80729736 MS.gene44550:CDS
GGACTGTGTTATCTTTGTCA+TGG 0.561082 1.2:+80729682 None:intergenic
TCTTCTCCTCCGTGACCGCA+AGG 0.561112 1.2:+80731169 None:intergenic
TGGATACTATGTGAAACCTA+TGG 0.563204 1.2:-80729625 MS.gene44550:CDS
TCAGACTGCAATATGAACCT+TGG 0.563823 1.2:+80731075 None:intergenic
TGCAGTGTATTGGGGTATGT+CGG 0.565836 1.2:+80729652 None:intergenic
CTGCATTTGTAGACGGCACA+GGG 0.566431 1.2:+80731118 None:intergenic
TGATTAGAGGCATTGATCCA+AGG 0.567311 1.2:-80731092 MS.gene44550:CDS
ATATATCCCTTGCGTTGCCG+AGG 0.568869 1.2:-80730106 MS.gene44550:CDS
TGTGGTAGGTTTCTGTGGCA+AGG 0.569531 1.2:+80729860 None:intergenic
GACAAGCTTTATATGAGGAA+AGG 0.570103 1.2:-80731739 MS.gene44550:CDS
ATCTCACTTGGGGTATACGT+TGG 0.570410 1.2:+80732026 None:intergenic
TAACATTGTAGATGGTGCAT+GGG 0.570614 1.2:-80730213 MS.gene44550:CDS
ACTTACTCGGATGTTAACTC+AGG 0.572912 1.2:-80731502 MS.gene44550:CDS
GAAAGGTTGGTATGGACTGA+AGG 0.575278 1.2:-80731722 MS.gene44550:CDS
GAGGCGACAAGCTTTATATG+AGG 0.576586 1.2:-80731744 MS.gene44550:CDS
ACAAGGCTGGTCTAGGGTGA+AGG 0.576887 1.2:-80730243 MS.gene44550:CDS
CATCATTGCCATCTCACTTG+GGG 0.579124 1.2:+80732016 None:intergenic
AACGTATACCCCAAGTGAGA+TGG 0.579805 1.2:-80732024 MS.gene44550:CDS
AAATCTGTTGTTGATCGTCA+AGG 0.579813 1.2:+80731636 None:intergenic
ACAACATTGAGCTTGGTGCA+TGG 0.580204 1.2:-80731693 MS.gene44550:CDS
CCAACAATCGTAAGTGTGGT+AGG 0.580385 1.2:+80729846 None:intergenic
CGAGACAGGTCCCTTCGCAC+AGG 0.583465 1.2:+80730908 None:intergenic
ACGACCTTCGACAAACCTAC+GGG 0.584033 1.2:+80731200 None:intergenic
AGGTCTACTTCAGACAAGGC+TGG 0.585540 1.2:-80730256 MS.gene44550:CDS
ATCTGCTCCTTGCTTGAGTG+TGG 0.585624 1.2:-80732119 MS.gene44550:CDS
ATCAAATCTGCATTTGTAGA+CGG 0.590289 1.2:+80731111 None:intergenic
GCATGAAAATGTTGTAGGTG+GGG 0.592686 1.2:-80732063 MS.gene44550:CDS
TCACTATCTCAAATATTGCA+AGG 0.596203 1.2:-80729568 MS.gene44550:CDS
TGCATGAAAATGTTGTAGGT+GGG 0.596497 1.2:-80732064 MS.gene44550:CDS
ATGACCATAAGAAACAAGGC+TGG 0.597597 1.2:-80730155 MS.gene44550:CDS
CGACCTCGATCCTGTGCGAA+GGG 0.601460 1.2:-80730918 MS.gene44550:CDS
ATGCCTTATGCTATGATTGG+TGG 0.601798 1.2:-80729771 MS.gene44550:CDS
TTGGGGTATGTCGGAAACCA+AGG 0.606539 1.2:+80729661 None:intergenic
AATGAACCTCGGCAACGCAA+GGG 0.607154 1.2:+80730100 None:intergenic
AGCATGCATGAAAATGTTGT+AGG 0.609002 1.2:-80732068 MS.gene44550:CDS
TGTACAATTGAAGGTGATTG+GGG 0.612279 1.2:-80731237 MS.gene44550:CDS
GTAAGTGTGGTAGGTTTCTG+TGG 0.617237 1.2:+80729855 None:intergenic
CCAACGACCACACTCAAGCA+AGG 0.618711 1.2:+80732112 None:intergenic
GAGCAGATCACAATATTAGG+AGG 0.621127 1.2:+80732134 None:intergenic
AGGTTTCACATAGTATCCAT+GGG 0.622147 1.2:+80729629 None:intergenic
CAACAGCGAACTTAACTGCA+TGG 0.624703 1.2:+80729706 None:intergenic
CATGAAAATGTTGTAGGTGG+GGG 0.624750 1.2:-80732062 MS.gene44550:CDS
TCCATGGGTGCAGTGTATTG+GGG 0.627336 1.2:+80729644 None:intergenic
ATGCATGAAAATGTTGTAGG+TGG 0.627822 1.2:-80732065 MS.gene44550:CDS
ACCTGATTTGCACATCGCAG+AGG 0.634639 1.2:-80729740 MS.gene44550:CDS
GGACAATATGTAAGGCCCGT+AGG 0.636455 1.2:-80731215 MS.gene44550:CDS
TCACCTTCAATTGTACACAT+AGG 0.636668 1.2:+80731243 None:intergenic
ATGGGTCTATCTGAAATATG+CGG 0.636801 1.2:-80730195 MS.gene44550:CDS
ACGACCTCGATCCTGTGCGA+AGG 0.639634 1.2:-80730919 MS.gene44550:CDS
ATCTGCATTAGACATTGCCG+TGG 0.643012 1.2:-80731377 MS.gene44550:intron
GGTCCCTTCGCACAGGATCG+AGG 0.647508 1.2:+80730915 None:intergenic
TTCTGGCAGAAGCCATACCA+CGG 0.648051 1.2:+80729885 None:intergenic
GGCAAGGTCTACTTCAGACA+AGG 0.649008 1.2:-80730260 MS.gene44550:CDS
CCTGATGAAGTAATGAACCT+CGG 0.649312 1.2:+80730089 None:intergenic
CGCTTACAGAACCCAAACCA+CGG 0.655051 1.2:+80731360 None:intergenic
TTATTTAGCAGTTAAAGGCG+AGG 0.655685 1.2:-80730388 MS.gene44550:intron
GAGGTTCATTACTTCATCAG+GGG 0.659487 1.2:-80730087 MS.gene44550:CDS
CAAGTGAGATGGCAATGATG+AGG 0.660753 1.2:-80732013 MS.gene44550:CDS
ACTCATGACCATAAGAAACA+AGG 0.663177 1.2:-80730159 MS.gene44550:CDS
TCAAAATCTTGACAGATGTG+CGG 0.663839 1.2:+80730042 None:intergenic
CGGACCAACAATCGTAAGTG+TGG 0.667344 1.2:+80729842 None:intergenic
ATTTGAGATAGTGATTGACC+TGG 0.673697 1.2:+80729577 None:intergenic
GGGTCTATCTGAAATATGCG+GGG 0.673953 1.2:-80730193 MS.gene44550:CDS
TATATACCAAAGTGCCCGAG+AGG 0.678235 1.2:+80730006 None:intergenic
AAGGCCCGTAGGTTTGTCGA+AGG 0.678246 1.2:-80731204 MS.gene44550:CDS
TGTTTAACCAGACTTTGCCG+TGG 0.679547 1.2:-80729902 MS.gene44550:intron
GTGAGGTCCGTATTTATCGG+AGG 0.693002 1.2:+80731330 None:intergenic
AGGTCGTTCGATAGACCTTG+CGG 0.706168 1.2:-80731184 MS.gene44550:CDS
TATGTGAAACCTATGGTCAG+CGG 0.713139 1.2:-80729618 MS.gene44550:CDS
GAGGTTCGACTGTATCGCAG+AGG 0.730544 1.2:-80731763 MS.gene44550:CDS
CAACGTAATCAATGACAGTG+AGG 0.734984 1.2:+80731313 None:intergenic
GATAGACCTTGCGGTCACGG+AGG 0.760484 1.2:-80731175 MS.gene44550:CDS
GTACAATTGAAGGTGATTGG+GGG 0.819509 1.2:-80731236 MS.gene44550:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAACCATATAAATTCAT+TGG + chr1.2:80730718-80730737 None:intergenic 15.0%
!! GGTTAATATAATTAGATATT+TGG - chr1.2:80731703-80731722 MS.gene44550:CDS 15.0%
!! TACATTCTAATTTGAATATA+TGG - chr1.2:80730958-80730977 MS.gene44550:intron 15.0%
!!! TATGTTAACATTTTCTATTA+TGG - chr1.2:80731233-80731252 MS.gene44550:CDS 15.0%
!! AGAAATAAACAATAACACAA+CGG + chr1.2:80730231-80730250 None:intergenic 20.0%
!! ATGTTAACATAAATTTATGC+CGG + chr1.2:80731224-80731243 None:intergenic 20.0%
!! GATATTTATAACATTGTAGA+TGG - chr1.2:80731452-80731471 MS.gene44550:intron 20.0%
!!! AACTAACGTACAAATTTTTT+CGG + chr1.2:80731123-80731142 None:intergenic 20.0%
! ATTTCGTTCATTCGATTATA+AGG - chr1.2:80731728-80731747 MS.gene44550:CDS 25.0%
! GTTTCCTATCTAATATCATA+AGG - chr1.2:80731255-80731274 MS.gene44550:CDS 25.0%
! TTAGCATCAAACACATTTAT+TGG + chr1.2:80729776-80729795 None:intergenic 25.0%
! TTTCTGTTTGTGTTTAGTAA+CGG - chr1.2:80730260-80730279 MS.gene44550:CDS 25.0%
!! AAATTTTCACGACAACAATA+AGG - chr1.2:80730931-80730950 MS.gene44550:CDS 25.0%
!! ACAACAATGATATTGTTGTT+TGG + chr1.2:80731374-80731393 None:intergenic 25.0%
!! GGTATATAATTTGCACTAAT+TGG - chr1.2:80731682-80731701 MS.gene44550:CDS 25.0%
!! TATATGTTGTTTATTCTGTC+CGG - chr1.2:80730672-80730691 MS.gene44550:intron 25.0%
AACAACATATACTTCAGTTC+AGG + chr1.2:80730663-80730682 None:intergenic 30.0%
AAGGTTATCTTACTGTTTGT+TGG - chr1.2:80731747-80731766 MS.gene44550:CDS 30.0%
AATATGCCTTATGCTATGAT+TGG - chr1.2:80731899-80731918 MS.gene44550:intron 30.0%
ACAAATGCAGATTTGATTAG+AGG - chr1.2:80730568-80730587 MS.gene44550:intron 30.0%
ACAACATATACTTCAGTTCA+GGG + chr1.2:80730662-80730681 None:intergenic 30.0%
ACGAATAACAATCAAATTGC+CGG + chr1.2:80730694-80730713 None:intergenic 30.0%
AGTTATCATAAACTCTGTCT+AGG - chr1.2:80731080-80731099 MS.gene44550:CDS 30.0%
ATCAAATCTGCATTTGTAGA+CGG + chr1.2:80730565-80730584 None:intergenic 30.0%
CACACCTTATGATATTAGAT+AGG + chr1.2:80731262-80731281 None:intergenic 30.0%
CAGATATACTTTCTTATGTC+CGG - chr1.2:80731202-80731221 MS.gene44550:CDS 30.0%
GTTGAAGTTCAGAAAAAGAA+TGG - chr1.2:80731392-80731411 MS.gene44550:intron 30.0%
TACTCCAATAATATCCAAAC+TGG - chr1.2:80730089-80730108 MS.gene44550:CDS 30.0%
TAGTCTTTCAAAAAGCAGTT+AGG + chr1.2:80729835-80729854 None:intergenic 30.0%
TATGTCCTCATCTATTAGAA+TGG + chr1.2:80729746-80729765 None:intergenic 30.0%
TCACTATCTCAAATATTGCA+AGG - chr1.2:80732105-80732124 MS.gene44550:CDS 30.0%
TCTATTACTCTCTACAAATC+CGG + chr1.2:80731016-80731035 None:intergenic 30.0%
TTCGTGCCAATGAATTTATA+TGG - chr1.2:80730709-80730728 MS.gene44550:intron 30.0%
! AACAAAACTTGGTGGTTAAA+AGG + chr1.2:80730886-80730905 None:intergenic 30.0%
! ACTTCTTTTGCAAAACATGA+AGG + chr1.2:80731314-80731333 None:intergenic 30.0%
! CACTATTGAATTGACTTACT+CGG - chr1.2:80730158-80730177 MS.gene44550:CDS 30.0%
! TCATGTTTTGCAAAAGAAGT+AGG - chr1.2:80731314-80731333 MS.gene44550:CDS 30.0%
! TGTCCTTATTTAGCAGTTAA+AGG - chr1.2:80731280-80731299 MS.gene44550:CDS 30.0%
! TGTTAATTTTCGTAGGGAAT+GGG - chr1.2:80729802-80729821 MS.gene44550:CDS 30.0%
!! GATATATCGGATAATGGATA+TGG + chr1.2:80731554-80731573 None:intergenic 30.0%
!!! AACTGCTTTTTGAAAGACTA+TGG - chr1.2:80729835-80729854 MS.gene44550:CDS 30.0%
!!! ATTTGTACGTTAGTTTTGTG+CGG - chr1.2:80731128-80731147 MS.gene44550:CDS 30.0%
AAATCTGTTGTTGATCGTCA+AGG + chr1.2:80730040-80730059 None:intergenic 35.0%
AACGCAGCATAAACAAAACT+TGG + chr1.2:80730897-80730916 None:intergenic 35.0%
AAGGAGCAGATCACAATATT+AGG + chr1.2:80729545-80729564 None:intergenic 35.0%
ACCTCAATCTCATTGTTCAT+TGG + chr1.2:80729895-80729914 None:intergenic 35.0%
ACTCATGACCATAAGAAACA+AGG - chr1.2:80731514-80731533 MS.gene44550:CDS 35.0%
ACTCCTATGTGTACAATTGA+AGG - chr1.2:80730427-80730446 MS.gene44550:intron 35.0%
AGCATGCATGAAAATGTTGT+AGG - chr1.2:80729605-80729624 MS.gene44550:CDS 35.0%
AGGTTTCACATAGTATCCAT+GGG + chr1.2:80732047-80732066 None:intergenic 35.0%
AGTTCAGAAAAAGAATGGCA+AGG - chr1.2:80731397-80731416 MS.gene44550:intron 35.0%
ATAACATTGTAGATGGTGCA+TGG - chr1.2:80731459-80731478 MS.gene44550:intron 35.0%
ATCGTCAAGGTCATAAGATT+TGG + chr1.2:80730027-80730046 None:intergenic 35.0%
ATGCATGAAAATGTTGTAGG+TGG - chr1.2:80729608-80729627 MS.gene44550:CDS 35.0%
ATGGTCATGAGTAGTAGATT+AGG + chr1.2:80731506-80731525 None:intergenic 35.0%
CAGACATAGTGTCAAATTCA+AGG + chr1.2:80729694-80729713 None:intergenic 35.0%
CATATTATTTGCAACAGCGA+AGG + chr1.2:80731885-80731904 None:intergenic 35.0%
CATCAAACACATTTATTGGC+AGG + chr1.2:80729772-80729791 None:intergenic 35.0%
GCTTCTATATTCTGTTTCCA+AGG - chr1.2:80730622-80730641 MS.gene44550:intron 35.0%
GTGTACAATTGAAGGTGATT+GGG - chr1.2:80730435-80730454 MS.gene44550:intron 35.0%
TAACATTGTAGATGGTGCAT+GGG - chr1.2:80731460-80731479 MS.gene44550:intron 35.0%
TAGGTTTCACATAGTATCCA+TGG + chr1.2:80732048-80732067 None:intergenic 35.0%
TCAAAATCTTGACAGATGTG+CGG + chr1.2:80731634-80731653 None:intergenic 35.0%
TCACCTTCAATTGTACACAT+AGG + chr1.2:80730433-80730452 None:intergenic 35.0%
TCCAATGAACAATGAGATTG+AGG - chr1.2:80729891-80729910 MS.gene44550:CDS 35.0%
TCCTCATCTATTAGAATGGT+CGG + chr1.2:80729742-80729761 None:intergenic 35.0%
TCGCCTTTAACTGCTAAATA+AGG + chr1.2:80731286-80731305 None:intergenic 35.0%
TGCATGAAAATGTTGTAGGT+GGG - chr1.2:80729609-80729628 MS.gene44550:CDS 35.0%
TGGATACTATGTGAAACCTA+TGG - chr1.2:80732048-80732067 MS.gene44550:CDS 35.0%
TGTACAATTGAAGGTGATTG+GGG - chr1.2:80730436-80730455 MS.gene44550:intron 35.0%
TGTGTACAATTGAAGGTGAT+TGG - chr1.2:80730434-80730453 MS.gene44550:intron 35.0%
TTATTTAGCAGTTAAAGGCG+AGG - chr1.2:80731285-80731304 MS.gene44550:CDS 35.0%
! AGCTTTATATGAGGAAAGGT+TGG - chr1.2:80729938-80729957 MS.gene44550:intron 35.0%
! ATATGGTTGAAGAGTGTAAG+TGG - chr1.2:80730975-80730994 MS.gene44550:intron 35.0%
! ATGGGTCTATCTGAAATATG+CGG - chr1.2:80731478-80731497 MS.gene44550:intron 35.0%
! ATTTGAGATAGTGATTGACC+TGG + chr1.2:80732099-80732118 None:intergenic 35.0%
! CATGTCTGAAATAGAAACCA+TGG - chr1.2:80731164-80731183 MS.gene44550:CDS 35.0%
! GACAAGCTTTATATGAGGAA+AGG - chr1.2:80729934-80729953 MS.gene44550:intron 35.0%
! GATCAACAACAGATTTTTCG+AGG - chr1.2:80730044-80730063 MS.gene44550:CDS 35.0%
! GTGTTAATTTTCGTAGGGAA+TGG - chr1.2:80729801-80729820 MS.gene44550:CDS 35.0%
!! TATATGAGGAAAGGTTGGTA+TGG - chr1.2:80729943-80729962 MS.gene44550:intron 35.0%
!! TGCTTTTTGAAAGACTATGG+TGG - chr1.2:80729838-80729857 MS.gene44550:CDS 35.0%
ACAGTGAGGTCCGTATTTAT+CGG + chr1.2:80730349-80730368 None:intergenic 40.0%
ACTTACTCGGATGTTAACTC+AGG - chr1.2:80730171-80730190 MS.gene44550:CDS 40.0%
AGGATGTTTGGTATTCACTG+TGG - chr1.2:80730191-80730210 MS.gene44550:CDS 40.0%
ATGACCATAAGAAACAAGGC+TGG - chr1.2:80731518-80731537 MS.gene44550:CDS 40.0%
ATGCCTTATGCTATGATTGG+TGG - chr1.2:80731902-80731921 MS.gene44550:intron 40.0%
ATTAGACATTGCCGTGGTTT+GGG - chr1.2:80730302-80730321 MS.gene44550:CDS 40.0%
ATTATTGGAGTAGTGTGAGC+AGG + chr1.2:80730081-80730100 None:intergenic 40.0%
CAACGTAATCAATGACAGTG+AGG + chr1.2:80730363-80730382 None:intergenic 40.0%
CATAAGAAACAAGGCTGGAT+TGG - chr1.2:80731523-80731542 MS.gene44550:CDS 40.0%
CATGAAAATGTTGTAGGTGG+GGG - chr1.2:80729611-80729630 MS.gene44550:CDS 40.0%
CCTGATGAAGTAATGAACCT+CGG + chr1.2:80731587-80731606 None:intergenic 40.0%
CGAGGTTCATTACTTCATCA+GGG - chr1.2:80731585-80731604 MS.gene44550:CDS 40.0%
CGGTCCAGTTTGGATATTAT+TGG + chr1.2:80730096-80730115 None:intergenic 40.0%
CGTGTTACCTCCGATAAATA+CGG - chr1.2:80730336-80730355 MS.gene44550:CDS 40.0%
GACAAAGATAACACAGTCCT+TGG - chr1.2:80731995-80732014 MS.gene44550:CDS 40.0%
GACTTCTACAACATTGAGCT+TGG - chr1.2:80729973-80729992 MS.gene44550:intron 40.0%
GAGCAGATCACAATATTAGG+AGG + chr1.2:80729542-80729561 None:intergenic 40.0%
GAGGTTCATTACTTCATCAG+GGG - chr1.2:80731586-80731605 MS.gene44550:CDS 40.0%
GCAAGGGATATATCGGATAA+TGG + chr1.2:80731560-80731579 None:intergenic 40.0%
GCAGCATAAACAAAACTTGG+TGG + chr1.2:80730894-80730913 None:intergenic 40.0%
GCATGAAAATGTTGTAGGTG+GGG - chr1.2:80729610-80729629 MS.gene44550:CDS 40.0%
GGACTGTGTTATCTTTGTCA+TGG + chr1.2:80731994-80732013 None:intergenic 40.0%
GGATGTTAACTCAGGATGTT+TGG - chr1.2:80730179-80730198 MS.gene44550:CDS 40.0%
GGGTACAAAATGCATAACCT+TGG + chr1.2:80730642-80730661 None:intergenic 40.0%
GTACAATTGAAGGTGATTGG+GGG - chr1.2:80730437-80730456 MS.gene44550:intron 40.0%
GTGGATAAAATGATGCAGAC+CGG - chr1.2:80730994-80731013 MS.gene44550:intron 40.0%
TATGTGAAACCTATGGTCAG+CGG - chr1.2:80732055-80732074 MS.gene44550:CDS 40.0%
TCACCACCAATCATAGCATA+AGG + chr1.2:80731908-80731927 None:intergenic 40.0%
TCAGACTGCAATATGAACCT+TGG + chr1.2:80730601-80730620 None:intergenic 40.0%
TCATCATTGCCATCTCACTT+GGG + chr1.2:80729661-80729680 None:intergenic 40.0%
TCCGACCATTCTAATAGATG+AGG - chr1.2:80729738-80729757 MS.gene44550:CDS 40.0%
TGACAGATAAAGTTCAGCCA+TGG + chr1.2:80731184-80731203 None:intergenic 40.0%
TGATTGGGGGACAATATGTA+AGG - chr1.2:80730450-80730469 MS.gene44550:intron 40.0%
TGCGGAAAAAATGCACTAAC+TGG + chr1.2:80731616-80731635 None:intergenic 40.0%
TGTCACGCTGAATGAACTTT+AGG + chr1.2:80730405-80730424 None:intergenic 40.0%
TTGATTACGTTGGATTTGCC+TGG - chr1.2:80730371-80730390 MS.gene44550:CDS 40.0%
! AATTTTCGTAGGGAATGGGT+CGG - chr1.2:80729806-80729825 MS.gene44550:CDS 40.0%
! ATGCGCGTGTTAATTTTCGT+AGG - chr1.2:80729795-80729814 MS.gene44550:CDS 40.0%
! CTCACTGTCATTGATTACGT+TGG - chr1.2:80730361-80730380 MS.gene44550:CDS 40.0%
! TGCGCGTGTTAATTTTCGTA+GGG - chr1.2:80729796-80729815 MS.gene44550:CDS 40.0%
! TGGGTCTATCTGAAATATGC+GGG - chr1.2:80731479-80731498 MS.gene44550:intron 40.0%
!! ATGCTATGATTGGTGGTGAT+TGG - chr1.2:80731909-80731928 MS.gene44550:intron 40.0%
!! CAATCCAGCCTTGTTTCTTA+TGG + chr1.2:80731525-80731544 None:intergenic 40.0%
!! TGATTAGAGGCATTGATCCA+AGG - chr1.2:80730581-80730600 MS.gene44550:intron 40.0%
AAAATCACGACGGTCCAGTT+TGG + chr1.2:80730106-80730125 None:intergenic 45.0%
AACGACCTTCGACAAACCTA+CGG + chr1.2:80730477-80730496 None:intergenic 45.0%
AACGTATACCCCAAGTGAGA+TGG - chr1.2:80729649-80729668 MS.gene44550:CDS 45.0%
AATTCCCCCCAAAATCACGA+CGG + chr1.2:80730116-80730135 None:intergenic 45.0%
AGTATGCTGGAACAGATGTC+GGG - chr1.2:80732133-80732152 MS.gene44550:CDS 45.0%
ATCCATGGGTGCAGTGTATT+GGG + chr1.2:80732033-80732052 None:intergenic 45.0%
ATCTCACTTGGGGTATACGT+TGG + chr1.2:80729650-80729669 None:intergenic 45.0%
ATCTGCATTAGACATTGCCG+TGG - chr1.2:80730296-80730315 MS.gene44550:CDS 45.0%
CAACAGCGAACTTAACTGCA+TGG + chr1.2:80731970-80731989 None:intergenic 45.0%
CAAGTGAGATGGCAATGATG+AGG - chr1.2:80729660-80729679 MS.gene44550:CDS 45.0%
CATCATTGCCATCTCACTTG+GGG + chr1.2:80729660-80729679 None:intergenic 45.0%
CATTAGACATTGCCGTGGTT+TGG - chr1.2:80730301-80730320 MS.gene44550:CDS 45.0%
CCAACAATCGTAAGTGTGGT+AGG + chr1.2:80731830-80731849 None:intergenic 45.0%
CCGAGGTTCATTACTTCATC+AGG - chr1.2:80731584-80731603 MS.gene44550:CDS 45.0%
CCTACCACACTTACGATTGT+TGG - chr1.2:80731827-80731846 MS.gene44550:CDS 45.0%
CTCATCATTGCCATCTCACT+TGG + chr1.2:80729662-80729681 None:intergenic 45.0%
CTTACGATTGTTGGTCCGAA+CGG - chr1.2:80731836-80731855 MS.gene44550:CDS 45.0%
GAACTTTAGGTCACATCTCC+AGG + chr1.2:80730392-80730411 None:intergenic 45.0%
GAGTATGCTGGAACAGATGT+CGG - chr1.2:80732132-80732151 MS.gene44550:CDS 45.0%
GTAAGTGTGGTAGGTTTCTG+TGG + chr1.2:80731821-80731840 None:intergenic 45.0%
GTTTCTGTGGCAAGGATTTC+TGG + chr1.2:80731808-80731827 None:intergenic 45.0%
TATCCATGGGTGCAGTGTAT+TGG + chr1.2:80732034-80732053 None:intergenic 45.0%
TGCAGTGTATTGGGGTATGT+CGG + chr1.2:80732024-80732043 None:intergenic 45.0%
TGCATGCTGCAAATCAGCTT+TGG + chr1.2:80729593-80729612 None:intergenic 45.0%
TGTTTAACCAGACTTTGCCG+TGG - chr1.2:80731771-80731790 MS.gene44550:CDS 45.0%
! AAACTGGACCGTCGTGATTT+TGG - chr1.2:80730105-80730124 MS.gene44550:CDS 45.0%
! AACTGGACCGTCGTGATTTT+GGG - chr1.2:80730106-80730125 MS.gene44550:CDS 45.0%
! GAGGCGACAAGCTTTATATG+AGG - chr1.2:80729929-80729948 MS.gene44550:intron 45.0%
! GGGTCTATCTGAAATATGCG+GGG - chr1.2:80731480-80731499 MS.gene44550:intron 45.0%
! TATATACCAAAGTGCCCGAG+AGG + chr1.2:80731670-80731689 None:intergenic 45.0%
!! ACAACATTGAGCTTGGTGCA+TGG - chr1.2:80729980-80729999 MS.gene44550:intron 45.0%
!! GAAAGGTTGGTATGGACTGA+AGG - chr1.2:80729951-80729970 MS.gene44550:intron 45.0%
!! TCGTGATTTTGGGGGGAATT+TGG - chr1.2:80730116-80730135 MS.gene44550:CDS 45.0%
!!! TGTACGTTAGTTTTGTGCGG+TGG - chr1.2:80731131-80731150 MS.gene44550:CDS 45.0%
AACCAGACTTTGCCGTGGTA+TGG - chr1.2:80731776-80731795 MS.gene44550:CDS 50.0%
AATGAACCTCGGCAACGCAA+GGG + chr1.2:80731576-80731595 None:intergenic 50.0%
ACCTCTGCGATGTGCAAATC+AGG + chr1.2:80731937-80731956 None:intergenic 50.0%
ACGACCTTCGACAAACCTAC+GGG + chr1.2:80730476-80730495 None:intergenic 50.0%
ACTTCGTCTGATGTCCTCTC+GGG - chr1.2:80731653-80731672 MS.gene44550:CDS 50.0%
AGGTCGTTCGATAGACCTTG+CGG - chr1.2:80730489-80730508 MS.gene44550:intron 50.0%
AGGTCTACTTCAGACAAGGC+TGG - chr1.2:80731417-80731436 MS.gene44550:intron 50.0%
ATATATCCCTTGCGTTGCCG+AGG - chr1.2:80731567-80731586 MS.gene44550:CDS 50.0%
ATCTGCTCCTTGCTTGAGTG+TGG - chr1.2:80729554-80729573 MS.gene44550:CDS 50.0%
CAGTGGTCGATATGTGTACC+AGG - chr1.2:80732078-80732097 MS.gene44550:CDS 50.0%
CATCTCCATGTACAGCCGTT+CGG + chr1.2:80731854-80731873 None:intergenic 50.0%
CGCTTACAGAACCCAAACCA+CGG + chr1.2:80730316-80730335 None:intergenic 50.0%
CGGACCAACAATCGTAAGTG+TGG + chr1.2:80731834-80731853 None:intergenic 50.0%
CGGCAACGCAAGGGATATAT+CGG + chr1.2:80731567-80731586 None:intergenic 50.0%
CTGCATTTGTAGACGGCACA+GGG + chr1.2:80730558-80730577 None:intergenic 50.0%
GACTTCGTCTGATGTCCTCT+CGG - chr1.2:80731652-80731671 MS.gene44550:CDS 50.0%
GATAAGTCCTCAACCGAGAC+AGG + chr1.2:80730782-80730801 None:intergenic 50.0%
GATTTGCACATCGCAGAGGT+TGG - chr1.2:80731937-80731956 MS.gene44550:intron 50.0%
GGACAATATGTAAGGCCCGT+AGG - chr1.2:80730458-80730477 MS.gene44550:intron 50.0%
GGCAAGGTCTACTTCAGACA+AGG - chr1.2:80731413-80731432 MS.gene44550:intron 50.0%
GTGAGGTCCGTATTTATCGG+AGG + chr1.2:80730346-80730365 None:intergenic 50.0%
TAATGAACCTCGGCAACGCA+AGG + chr1.2:80731577-80731596 None:intergenic 50.0%
TCCATGGGTGCAGTGTATTG+GGG + chr1.2:80732032-80732051 None:intergenic 50.0%
TCTGCATTTGTAGACGGCAC+AGG + chr1.2:80730559-80730578 None:intergenic 50.0%
TGTGGTAGGTTTCTGTGGCA+AGG + chr1.2:80731816-80731835 None:intergenic 50.0%
TTCGATAGACCTTGCGGTCA+CGG - chr1.2:80730495-80730514 MS.gene44550:intron 50.0%
TTCTGGCAGAAGCCATACCA+CGG + chr1.2:80731791-80731810 None:intergenic 50.0%
TTGGGGTATGTCGGAAACCA+AGG + chr1.2:80732015-80732034 None:intergenic 50.0%
! ACCTGATTTGCACATCGCAG+AGG - chr1.2:80731933-80731952 MS.gene44550:intron 50.0%
! ACTGGACCGTCGTGATTTTG+GGG - chr1.2:80730107-80730126 MS.gene44550:CDS 50.0%
! TTGCAAGGCGAAGAGTATGC+TGG - chr1.2:80732120-80732139 MS.gene44550:CDS 50.0%
!! ACTTCAGACAAGGCTGGTCT+AGG - chr1.2:80731423-80731442 MS.gene44550:intron 50.0%
!! CTTCAGACAAGGCTGGTCTA+GGG - chr1.2:80731424-80731443 MS.gene44550:intron 50.0%
AAACCTATGGTCAGCGGCAG+TGG - chr1.2:80732061-80732080 MS.gene44550:CDS 55.0%
AAGGCCCGTAGGTTTGTCGA+AGG - chr1.2:80730469-80730488 MS.gene44550:intron 55.0%
ACCCCAATACACTGCACCCA+TGG - chr1.2:80732028-80732047 MS.gene44550:CDS 55.0%
AGCCATACCACGGCAAAGTC+TGG + chr1.2:80731781-80731800 None:intergenic 55.0%
CCAACGACCACACTCAAGCA+AGG + chr1.2:80729564-80729583 None:intergenic 55.0%
CCTTGCTTGAGTGTGGTCGT+TGG - chr1.2:80729561-80729580 MS.gene44550:CDS 55.0%
GAGGTTCGACTGTATCGCAG+AGG - chr1.2:80729910-80729929 MS.gene44550:intron 55.0%
TGATGTCCTCTCGGGCACTT+TGG - chr1.2:80731661-80731680 MS.gene44550:CDS 55.0%
TTGGTCCGAACGGCTGTACA+TGG - chr1.2:80731846-80731865 MS.gene44550:CDS 55.0%
! ACATCGCAGAGGTTGGTTGC+AGG - chr1.2:80731944-80731963 MS.gene44550:intron 55.0%
! CTGGACCGTCGTGATTTTGG+GGG - chr1.2:80730108-80730127 MS.gene44550:CDS 55.0%
! TGGACCGTCGTGATTTTGGG+GGG - chr1.2:80730109-80730128 MS.gene44550:CDS 55.0%
!! ACAAGGCTGGTCTAGGGTGA+AGG - chr1.2:80731430-80731449 MS.gene44550:intron 55.0%
ACGACCTCGATCCTGTGCGA+AGG - chr1.2:80730754-80730773 MS.gene44550:intron 60.0%
CGACCTCGATCCTGTGCGAA+GGG - chr1.2:80730755-80730774 MS.gene44550:intron 60.0%
CTGTGCGAAGGGACCTGTCT+CGG - chr1.2:80730766-80730785 MS.gene44550:intron 60.0%
GAAGGGACCTGTCTCGGTTG+AGG - chr1.2:80730772-80730791 MS.gene44550:intron 60.0%
GATAGACCTTGCGGTCACGG+AGG - chr1.2:80730498-80730517 MS.gene44550:intron 60.0%
TCTTCTCCTCCGTGACCGCA+AGG + chr1.2:80730507-80730526 None:intergenic 60.0%
CGACCACTGCCGCTGACCAT+AGG + chr1.2:80732067-80732086 None:intergenic 65.0%
CGAGACAGGTCCCTTCGCAC+AGG + chr1.2:80730768-80730787 None:intergenic 65.0%
GGTCCCTTCGCACAGGATCG+AGG + chr1.2:80730761-80730780 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 80729536 80732159 80729536 ID=MS.gene44550
chr1.2 mRNA 80729536 80732159 80729536 ID=MS.gene44550.t1;Parent=MS.gene44550
chr1.2 exon 80731983 80732159 80731983 ID=MS.gene44550.t1.exon1;Parent=MS.gene44550.t1
chr1.2 CDS 80731983 80732159 80731983 ID=cds.MS.gene44550.t1;Parent=MS.gene44550.t1
chr1.2 exon 80731495 80731878 80731495 ID=MS.gene44550.t1.exon2;Parent=MS.gene44550.t1
chr1.2 CDS 80731495 80731878 80731495 ID=cds.MS.gene44550.t1;Parent=MS.gene44550.t1
chr1.2 exon 80731052 80731388 80731052 ID=MS.gene44550.t1.exon3;Parent=MS.gene44550.t1
chr1.2 CDS 80731052 80731388 80731052 ID=cds.MS.gene44550.t1;Parent=MS.gene44550.t1
chr1.2 exon 80730871 80730950 80730871 ID=MS.gene44550.t1.exon4;Parent=MS.gene44550.t1
chr1.2 CDS 80730871 80730950 80730871 ID=cds.MS.gene44550.t1;Parent=MS.gene44550.t1
chr1.2 exon 80730013 80730399 80730013 ID=MS.gene44550.t1.exon5;Parent=MS.gene44550.t1
chr1.2 CDS 80730013 80730399 80730013 ID=cds.MS.gene44550.t1;Parent=MS.gene44550.t1
chr1.2 exon 80729536 80729913 80729536 ID=MS.gene44550.t1.exon6;Parent=MS.gene44550.t1
chr1.2 CDS 80729536 80729913 80729536 ID=cds.MS.gene44550.t1;Parent=MS.gene44550.t1
Gene Sequence

>MS.gene44550

ATGCCTCCTAATATTGTGATCTGCTCCTTGCTTGAGTGTGGTCGTTGGTTTTATCCAAAGCTGATTTGCAGCATGCATGAAAATGTTGTAGGTGGGGGTAACGACTTTCATCCAACGTATACCCCAAGTGAGATGGCAATGATGAGGACATACTTCCTTGAATTTGACACTATGTCTGTAAGTGTTGTTAAATAATTTTGTCTCCGACCATTCTAATAGATGAGGACATACTTCCTGCCAATAAATGTGTTTGATGCTAATGCGCGTGTTAATTTTCGTAGGGAATGGGTCGGATGCCTAACTGCTTTTTGAAAGACTATGGTGGTTATATTGAAGACTACGTTATGTTGCGAGATCCAATGAACAATGAGATTGAGGTTCGACTGTATCGCAGAGGCGACAAGCTTTATATGAGGAAAGGTTGGTATGGACTGAAGGACTTCTACAACATTGAGCTTGGTGCATGGATAGACTTGACATATGAAAGACCAAATCTTATGACCTTGACGATCAACAACAGATTTTTCGAGGAAATTTTGTATCCTGCTCACACTACTCCAATAATATCCAAACTGGACCGTCGTGATTTTGGGGGGAATTTGGATGATTTTTTTGAGACATTCACTATTGAATTGACTTACTCGGATGTTAACTCAGGATGTTTGGTATTCACTGTGGATTGCTTTATATTTCCGTTGTGTTATTGTTTATTTCTTAAATGATATTTCTGTTTGTGTTTAGTAACGGTGTTTATTATTTCATCTGCATTAGACATTGCCGTGGTTTGGGTTCTGTAAGCGCGTGTTACCTCCGATAAATACGGACCTCACTGTCATTGATTACGTTGGATTTGCCTGGAGATGTGACCTAAAGTTCATTCAGCGTGACAAGACTCCTATGTGTACAATTGAAGGTGATTGGGGGACAATATGTAAGGCCCGTAGGTTTGTCGAAGGTCGTTCGATAGACCTTGCGGTCACGGAGGAGAAGAATAATTATGTGCTTTACTTGAAATTTATCCCTGTGCCGTCTACAAATGCAGATTTGATTAGAGGCATTGATCCAAGGTTCATATTGCAGTCTGATGCTTCTATATTCTGTTTCCAAGGTTATGCATTTTGTACCCTGAACTGAAGTATATGTTGTTTATTCTGTCCGGCAATTTGATTGTTATTCGTGCCAATGAATTTATATGGTTTTTTATTACAGACTCTGCTAACGACCTCGATCCTGTGCGAAGGGACCTGTCTCGGTTGAGGACTTATCGTCTCGAGCTAGATAGCGACATTGTGAGATCTCTGTCTTCTTATTAGTGCAATTGTACTAAAAATTTGTGTAATTTATGTGCCTTTTAACCACCAAGTTTTGTTTATGCTGCGTTGTTCTTAAATTTTAAAATTTTCACGACAACAATAAGGATAGTACATTCTAATTTGAATATATGGTTGAAGAGTGTAAGTGGATAAAATGATGCAGACCGGATTTGTAGAGAGTAATAGAAGTTTTTGCATATACGAATCTGAGATTCAGACATAATTGATAATAGTTATCATAAACTCTGTCTAGGATTGCTGATCTCAGACGCCGAAAAAATTTGTACGTTAGTTTTGTGCGGTGGTTATTGTATTCATGTCTGAAATAGAAACCATGGCTGAACTTTATCTGTCAGATATACTTTCTTATGTCCGGCATAAATTTATGTTAACATTTTCTATTATGGTTTCCTATCTAATATCATAAGGTGTGTCCTTATTTAGCAGTTAAAGGCGAGGTTACCTTCATGTTTTGCAAAAGAAGTAGGCGTGCATATTGATGATCATGTTATGCTTCGTGATCCAAACAACAATATCATTGTTGTTGAAGTTCAGAAAAAGAATGGCAAGGTCTACTTCAGACAAGGCTGGTCTAGGGTGAAGGATATTTATAACATTGTAGATGGTGCATGGGTCTATCTGAAATATGCGGGGCCTAATCTACTACTCATGACCATAAGAAACAAGGCTGGATTGGAGATACCATATCCATTATCCGATATATCCCTTGCGTTGCCGAGGTTCATTACTTCATCAGGGGAGAGCCAGTTAGTGCATTTTTTCCGCACATCTGTCAAGATTTTGACTTCGTCTGATGTCCTCTCGGGCACTTTGGTATATAATTTGCACTAATTGGTTAATATAATTAGATATTTGGTTATTTCGTTCATTCGATTATAAGGTTATCTTACTGTTTGTTGGTTGTTTAACCAGACTTTGCCGTGGTATGGCTTCTGCCAGAAATCCTTGCCACAGAAACCTACCACACTTACGATTGTTGGTCCGAACGGCTGTACATGGAGATGTGATCTGACCTTCGCTGTTGCAAATAATATGCCTTATGCTATGATTGGTGGTGATTGGAACCTGATTTGCACATCGCAGAGGTTGGTTGCAGGCCATGCAGTTAAGTTCGCTGTTGTCCATGACAAAGATAACACAGTCCTTGGTTTCCGACATACCCCAATACACTGCACCCATGGATACTATGTGAAACCTATGGTCAGCGGCAGTGGTCGATATGTGTACCAGGTCAATCACTATCTCAAATATTGCAAGGCGAAGAGTATGCTGGAACAGATGTCGGGATGA
Protein sequence

>MS.gene44550.t1

MPPNIVICSLLECGRWFYPKLICSMHENVVGGGNDFHPTYTPSEMAMMRTYFLEFDTMSGMGRMPNCFLKDYGGYIEDYVMLRDPMNNEIEVRLYRRGDKLYMRKGWYGLKDFYNIELGAWIDLTYERPNLMTLTINNRFFEEILYPAHTTPIISKLDRRDFGGNLDDFFETFTIELTYSDVNSGCLTLPWFGFCKRVLPPINTDLTVIDYVGFAWRCDLKFIQRDKTPMCTIEGDWGTICKARRFVEGRSIDLAVTEEKNNYVLYLKFIPVPSTNADLIRGIDPRFILQSDASIFCFQDSANDLDPVRRDLSRLRTYRLELDSDILKARLPSCFAKEVGVHIDDHVMLRDPNNNIIVVEVQKKNGKVYFRQGWSRVKDIYNIVDGAWVYLKYAGPNLLLMTIRNKAGLEIPYPLSDISLALPRFITSSGESQLVHFFRTSVKILTSSDVLSGTLTLPWYGFCQKSLPQKPTTLTIVGPNGCTWRCDLTFAVANNMPYAMIGGDWNLICTSQRLVAGHAVKFAVVHDKDNTVLGFRHTPIHCTHGYYVKPMVSGSGRYVYQVNHYLKYCKAKSMLEQMSG