AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene44905

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene44905.t1 MTR_5g070440 88.686 274 31 0 1 274 1 274 0.0 512
MS.gene44905.t1 MTR_3g005490 72.000 275 66 2 1 274 1 265 3.46e-141 397
MS.gene44905.t1 MTR_3g005480 69.343 274 72 2 1 272 1 264 2.03e-134 380
MS.gene44905.t1 MTR_3g005420 66.288 264 89 0 11 274 279 542 1.02e-121 358
MS.gene44905.t1 MTR_3g005420 56.929 267 91 3 1 265 20 264 2.25e-93 286
MS.gene44905.t1 MTR_3g005460 65.918 267 83 2 16 274 257 523 9.34e-119 350
MS.gene44905.t1 MTR_3g005460 55.639 266 91 4 1 262 1 243 6.71e-90 276
MS.gene44905.t1 MTR_3g005420 56.929 267 91 3 1 265 1 245 5.19e-94 286
MS.gene44905.t1 MTR_3g005420 55.985 259 79 1 16 274 265 488 1.31e-91 280
MS.gene44905.t1 MTR_3g005495 54.789 261 96 7 10 266 231 473 1.71e-83 258
MS.gene44905.t1 MTR_3g005495 51.055 237 85 3 36 271 28 234 4.52e-72 229
MS.gene44905.t1 MTR_3g005440 57.778 225 87 2 3 226 223 440 8.69e-81 250
MS.gene44905.t1 MTR_3g005440 49.785 233 66 3 35 265 34 217 5.18e-62 202
MS.gene44905.t1 MTR_1g015350 38.462 247 68 7 1 244 1 166 7.71e-34 121
MS.gene44905.t1 MTR_7g050560 28.276 290 162 7 20 271 12 293 1.08e-29 114
MS.gene44905.t1 MTR_1g034240 48.485 99 51 0 21 119 7 105 1.75e-29 115
MS.gene44905.t1 MTR_3g061310 28.269 283 158 7 21 267 12 285 1.59e-27 107
MS.gene44905.t1 MTR_7g050580 28.522 291 160 8 20 271 12 293 5.47e-26 104
MS.gene44905.t1 MTR_4g068320 36.025 161 97 2 18 173 3 162 8.50e-26 105
MS.gene44905.t1 MTR_4g068320 32.877 146 73 5 134 271 263 391 1.21e-11 64.7
MS.gene44905.t1 MTR_3g098790 26.531 294 171 5 20 271 12 302 1.05e-25 103
MS.gene44905.t1 MTR_3g061320 27.437 277 164 6 20 267 11 279 1.01e-24 100
MS.gene44905.t1 MTR_1g034210 48.889 90 46 0 21 110 7 96 1.50e-24 100
MS.gene44905.t1 MTR_3g061370 25.850 294 164 5 14 267 2 281 2.48e-24 99.4
MS.gene44905.t1 MTR_1g034210 48.889 90 46 0 21 110 7 96 3.14e-24 100
MS.gene44905.t1 MTR_8g103940 25.333 300 165 7 21 268 39 331 4.20e-24 101
MS.gene44905.t1 MTR_3g061340 26.838 272 165 6 21 267 12 274 3.31e-23 95.9
MS.gene44905.t1 MTR_7g050710 27.036 307 173 8 14 271 6 310 6.93e-23 96.3
MS.gene44905.t1 MTR_3g061350 25.874 286 160 7 21 267 12 284 2.66e-22 94.0
MS.gene44905.t1 MTR_0152s0100 41.509 106 61 1 167 272 8 112 4.80e-21 86.3
MS.gene44905.t1 MTR_0152s0100 41.509 106 61 1 167 272 8 112 4.80e-21 86.3
MS.gene44905.t1 MTR_7g050720 25.868 317 171 10 13 268 2 315 1.22e-20 89.7
MS.gene44905.t1 MTR_1g035460 26.014 296 145 8 37 268 2 287 1.53e-20 90.5
MS.gene44905.t1 MTR_7g050590 25.862 290 152 7 37 271 2 283 2.45e-20 88.6
MS.gene44905.t1 MTR_5g044670 24.422 303 173 6 17 271 12 306 3.15e-20 89.0
MS.gene44905.t1 MTR_1g108780 24.399 291 152 8 36 269 12 291 6.39e-19 86.3
MS.gene44905.t1 MTR_3g061290 40.000 100 58 1 20 119 11 108 2.02e-17 79.0
MS.gene44905.t1 MTR_3g061330 35.172 145 87 3 21 163 12 151 2.14e-17 79.7
MS.gene44905.t1 MTR_3g061220 38.384 99 46 2 21 119 12 95 6.75e-15 69.7
MS.gene44905.t1 MTR_4g119990 25.773 291 167 8 20 261 14 304 7.79e-15 73.9
MS.gene44905.t1 MTR_6g043890 31.690 142 87 3 20 154 14 152 2.41e-14 72.4
MS.gene44905.t1 MTR_7g050640 31.429 105 72 0 20 124 12 116 9.33e-13 63.9
MS.gene44905.t1 MTR_1g035640 21.402 271 181 6 30 270 14 282 1.36e-12 67.8
MS.gene44905.t1 MTR_1g021270 30.928 97 66 1 20 116 15 110 2.33e-12 67.0
MS.gene44905.t1 MTR_1g035440 32.692 104 69 1 20 122 14 117 3.50e-12 65.1
MS.gene44905.t1 MTR_1g021400 32.632 95 64 0 20 114 29 123 5.32e-12 65.5
MS.gene44905.t1 MTR_1g021320 31.579 95 65 0 20 114 24 118 2.08e-11 64.3
MS.gene44905.t1 MTR_1g021320 34.737 95 60 2 20 114 183 275 4.56e-11 63.5
MS.gene44905.t1 MTR_1g050845 23.881 268 187 7 19 272 7 271 5.02e-11 63.2
MS.gene44905.t1 MTR_1g035620 23.022 278 185 9 21 272 9 283 5.83e-11 62.8
MS.gene44905.t1 MTR_1g021435 33.684 95 63 0 20 114 21 115 7.05e-11 62.4
MS.gene44905.t1 MTR_1g021410 36.709 79 50 0 33 111 34 112 9.19e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene44905.t1 AT3G18990 48.485 99 51 0 21 119 6 104 6.46e-26 104
MS.gene44905.t1 AT3G18990 34.247 146 74 5 134 273 212 341 5.48e-11 62.4
MS.gene44905.t1 AT3G18990 48.485 99 51 0 21 119 6 104 1.14e-25 104
MS.gene44905.t1 AT3G18990 34.014 147 75 5 134 274 212 342 6.79e-11 62.4
MS.gene44905.t1 AT4G01580 40.351 114 66 1 10 121 17 130 7.15e-20 85.1
MS.gene44905.t1 AT3G18960 38.596 114 68 1 10 121 17 130 2.77e-18 80.9
MS.gene44905.t1 AT3G18960 38.596 114 68 1 10 121 17 130 3.56e-18 81.3
MS.gene44905.t1 AT1G49475 37.037 135 75 2 4 129 8 141 2.00e-17 78.6
MS.gene44905.t1 AT3G18960 38.636 88 54 0 34 121 6 93 1.99e-13 67.4
MS.gene44905.t1 AT4G31690 24.590 244 156 8 19 257 12 232 2.16e-12 66.2
MS.gene44905.t1 AT4G31640 25.287 261 156 11 18 268 11 242 6.64e-12 65.5
MS.gene44905.t1 AT1G49480 32.919 161 82 6 123 273 82 226 1.27e-11 63.2
MS.gene44905.t1 AT1G49480 32.919 161 82 6 123 273 82 226 1.27e-11 63.2
MS.gene44905.t1 AT1G49480 32.919 161 82 6 123 273 82 226 1.27e-11 63.2

Find 54 sgRNAs with CRISPR-Local

Find 112 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTGCCCTCCATGAGAATTT+TGG 0.201758 5.2:+59523974 None:intergenic
AGTGAAGCTTACTATTTCTT+TGG 0.231343 5.2:+59525655 None:intergenic
GATGAATTTATATCAAGATT+TGG 0.269670 5.2:-59524558 MS.gene44905:CDS
CAACGAAAATAAGGGTTGTT+TGG 0.270085 5.2:+59524156 None:intergenic
TACTATTTCTTTGGAATGAA+TGG 0.303913 5.2:+59525664 None:intergenic
AGATGGTCGTGTCTGGAAAA+TGG 0.306967 5.2:-59524499 MS.gene44905:CDS
TTATAGGAACATTTGGCTTC+AGG 0.316899 5.2:+59524001 None:intergenic
ATGAATTTATATCAAGATTT+GGG 0.336114 5.2:-59524557 MS.gene44905:CDS
ATGAATGGGTGAGGGAAGTA+TGG 0.359095 5.2:+59525679 None:intergenic
TCCCTTCATATTTGAAAGAA+AGG 0.361097 5.2:+59524391 None:intergenic
ATTATCCTAGTTCTAGAAAA+AGG 0.363374 5.2:-59524275 MS.gene44905:CDS
TGGAGCTTTATAGGAACATT+TGG 0.363518 5.2:+59523994 None:intergenic
AACGAAAATAAGGGTTGTTT+GGG 0.366185 5.2:+59524157 None:intergenic
GAATACTATTCTATAGGATA+TGG 0.373789 5.2:-59524420 MS.gene44905:CDS
ATGTGAGAGGCGTGGGAAAA+AGG 0.385584 5.2:-59524238 MS.gene44905:CDS
TTCCTTTCTTTCAAATATGA+AGG 0.389522 5.2:-59524393 MS.gene44905:CDS
AATCTTGATATAAATTCATC+TGG 0.413169 5.2:+59524561 None:intergenic
CTGTTCCAGATGGTCGTGTC+TGG 0.416931 5.2:-59524506 MS.gene44905:CDS
CCTTCTCCGCCGCTGATGTC+CGG 0.429180 5.2:+59525723 None:intergenic
GTTGTTTGGGTTGAGTTCCT+TGG 0.432159 5.2:+59524170 None:intergenic
ACTATTTCTTTGGAATGAAT+GGG 0.437997 5.2:+59525665 None:intergenic
TTTGTAGAATACTATTCTAT+AGG 0.438154 5.2:-59524426 MS.gene44905:CDS
GGAGGGCAGTGGGAAGTGTT+TGG 0.442028 5.2:-59523961 MS.gene44905:CDS
TTCTTTGGAATGAATGGGTG+AGG 0.464859 5.2:+59525670 None:intergenic
CCTCTCACATGTTTCAACCT+TGG 0.481695 5.2:+59524251 None:intergenic
CCGGACATCAGCGGCGGAGA+AGG 0.487570 5.2:-59525723 MS.gene44905:CDS
CTCGCCGGCGAAAGTGTGTC+CGG 0.493553 5.2:-59525742 MS.gene44905:CDS
ATAAAGCTCCAAAATTCTCA+TGG 0.500218 5.2:-59523982 MS.gene44905:CDS
AAAATTCTCATGGAGGGCAG+TGG 0.508854 5.2:-59523972 MS.gene44905:CDS
TCCTTTCTTTCAAATATGAA+GGG 0.512330 5.2:-59524392 MS.gene44905:CDS
TTGCAACAATGCAGCCTCGC+CGG 0.517685 5.2:-59525757 None:intergenic
TCTTTGGAATGAATGGGTGA+GGG 0.542125 5.2:+59525671 None:intergenic
TTGAAACATGTGAGAGGCGT+GGG 0.548958 5.2:-59524245 MS.gene44905:CDS
TTTCGTTGCAAAATCGTCAA+GGG 0.551442 5.2:-59524141 MS.gene44905:CDS
AAGAGTAGAGGATGCTGCCA+AGG 0.559277 5.2:-59524187 MS.gene44905:CDS
AGCTCCAAAATTCTCATGGA+GGG 0.568287 5.2:-59523978 MS.gene44905:CDS
ATGTCCGGACACACTTTCGC+CGG 0.578110 5.2:+59525738 None:intergenic
AAATTCTCATGGAGGGCAGT+GGG 0.584828 5.2:-59523971 MS.gene44905:CDS
TTCAAAACTTCAAGTACCAA+CGG 0.586316 5.2:-59524312 MS.gene44905:CDS
ATCAGCAATGCAAATAGTGA+GGG 0.596191 5.2:-59523917 MS.gene44905:CDS
ATATGCTTCTAAAAGAGTAG+AGG 0.611088 5.2:-59524199 MS.gene44905:CDS
GTTGAAACATGTGAGAGGCG+TGG 0.612877 5.2:-59524246 MS.gene44905:CDS
GCTACAATTACTGTTCCAGA+TGG 0.621864 5.2:-59524516 MS.gene44905:CDS
CATCAGCAATGCAAATAGTG+AGG 0.629339 5.2:-59523918 MS.gene44905:CDS
AAGCTCCAAAATTCTCATGG+AGG 0.639241 5.2:-59523979 MS.gene44905:CDS
GTGTGTTTGAGCTGATCAAG+AGG 0.642202 5.2:-59523846 MS.gene44905:CDS
AGGGACAACAAACTGTCACA+TGG 0.650637 5.2:-59523877 MS.gene44905:CDS
AAAAGTCACAATGTTTCGTG+CGG 0.653466 5.2:-59523809 MS.gene44905:CDS
CCAAGGTTGAAACATGTGAG+AGG 0.654125 5.2:-59524251 MS.gene44905:CDS
CGGACACACTTTCGCCGGCG+AGG 0.660589 5.2:+59525743 None:intergenic
GTGTGTCCGGACATCAGCGG+CGG 0.685373 5.2:-59525729 MS.gene44905:CDS
AATCGTCAAGGGAAAATATG+CGG 0.692781 5.2:-59524130 MS.gene44905:intron
TCAGCAATGCAAATAGTGAG+GGG 0.699768 5.2:-59523916 MS.gene44905:CDS
AAAGTGTGTCCGGACATCAG+CGG 0.723750 5.2:-59525732 MS.gene44905:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAGTCAAAA+AGG + chr5.2:59524009-59524028 None:intergenic 10.0%
!!! TTTTTGACTTTTTTTTTTTT+TGG - chr5.2:59524008-59524027 MS.gene44905:CDS 10.0%
!! ATGAATTTATATCAAGATTT+GGG - chr5.2:59524984-59525003 MS.gene44905:intron 15.0%
!! CATATACATAAAATTTATGT+TGG + chr5.2:59524793-59524812 None:intergenic 15.0%
!!! AAAATTGATTTTGACATATT+TGG - chr5.2:59524181-59524200 MS.gene44905:CDS 15.0%
!!! ATAAATTCTAATTTGAAGTT+AGG + chr5.2:59524740-59524759 None:intergenic 15.0%
!!! ATAATAAAAGTACAAAACAA+GGG + chr5.2:59523918-59523937 None:intergenic 15.0%
!! AATCTTGATATAAATTCATC+TGG + chr5.2:59524983-59525002 None:intergenic 20.0%
!! ATTAAATTCTAACTTCAAGT+TGG + chr5.2:59524248-59524267 None:intergenic 20.0%
!! CTTGAAGTTAGAATTTAATT+TGG - chr5.2:59524249-59524268 MS.gene44905:CDS 20.0%
!! GATGAATTTATATCAAGATT+TGG - chr5.2:59524983-59525002 MS.gene44905:intron 20.0%
!! TTTGTAGAATACTATTCTAT+AGG - chr5.2:59525115-59525134 MS.gene44905:intron 20.0%
!!! CATAATAAAAGTACAAAACA+AGG + chr5.2:59523919-59523938 None:intergenic 20.0%
! AATCACTTTCAATTCAACTA+AGG + chr5.2:59524321-59524340 None:intergenic 25.0%
! ATAATTAACATACTGCACAA+TGG + chr5.2:59525503-59525522 None:intergenic 25.0%
! ATCACTTTCAATTCAACTAA+GGG + chr5.2:59524320-59524339 None:intergenic 25.0%
! CATACTTTACTTAGTATGTT+TGG - chr5.2:59524349-59524368 MS.gene44905:CDS 25.0%
! GAATACTATTCTATAGGATA+TGG - chr5.2:59525121-59525140 MS.gene44905:intron 25.0%
! TCCTTTCTTTCAAATATGAA+GGG - chr5.2:59525149-59525168 MS.gene44905:intron 25.0%
! TTCCTTTCTTTCAAATATGA+AGG - chr5.2:59525148-59525167 MS.gene44905:intron 25.0%
!! GGGATTTTCTATATTTCAAA+GGG - chr5.2:59525645-59525664 MS.gene44905:intron 25.0%
!! TCAGTGTTTCTTTTATTCAA+TGG - chr5.2:59524070-59524089 MS.gene44905:intron 25.0%
!!! ACTATTTCTTTGGAATGAAT+GGG + chr5.2:59523879-59523898 None:intergenic 25.0%
!!! AGAATTGATTTTGACATGTT+TGG - chr5.2:59524411-59524430 MS.gene44905:CDS 25.0%
!!! ATTATCCTAGTTCTAGAAAA+AGG - chr5.2:59525266-59525285 MS.gene44905:intron 25.0%
!!! GAACTAGGATAATTTGTTTT+TGG + chr5.2:59525259-59525278 None:intergenic 25.0%
!!! GTAGATTTTGATTCTTGAAT+TGG - chr5.2:59524491-59524510 MS.gene44905:CDS 25.0%
!!! TACTATTTCTTTGGAATGAA+TGG + chr5.2:59523880-59523899 None:intergenic 25.0%
!!! TGATTCTCTAGAATTGATTT+TGG + chr5.2:59524601-59524620 None:intergenic 25.0%
AAAATTTATGTTGGCAGCTT+TGG + chr5.2:59524784-59524803 None:intergenic 30.0%
AAATCCATTCACTTTAAGCT+AGG - chr5.2:59524464-59524483 MS.gene44905:CDS 30.0%
AAATCCTAGCTTAAAGTGAA+TGG + chr5.2:59524471-59524490 None:intergenic 30.0%
AAATTTATGTTGGCAGCTTT+GGG + chr5.2:59524783-59524802 None:intergenic 30.0%
AACGAAAATAAGGGTTGTTT+GGG + chr5.2:59525387-59525406 None:intergenic 30.0%
ATAAAGCTCCAAAATTCTCA+TGG - chr5.2:59525559-59525578 MS.gene44905:intron 30.0%
TCCCTTCATATTTGAAAGAA+AGG + chr5.2:59525153-59525172 None:intergenic 30.0%
TTCAAAACTTCAAGTACCAA+CGG - chr5.2:59525229-59525248 MS.gene44905:intron 30.0%
! ACGATTTTGCAACGAAAATA+AGG + chr5.2:59525397-59525416 None:intergenic 30.0%
! ACGTTTTCTTTTGCAACAAA+TGG - chr5.2:59525086-59525105 MS.gene44905:intron 30.0%
! AGTGAAGCTTACTATTTCTT+TGG + chr5.2:59523889-59523908 None:intergenic 30.0%
! ATATGCTTCTAAAAGAGTAG+AGG - chr5.2:59525342-59525361 MS.gene44905:intron 30.0%
! ATCCAAACACAAATCACTTT+TGG - chr5.2:59524559-59524578 MS.gene44905:CDS 30.0%
! ATTGTGACTTTTAGCACAAT+CGG + chr5.2:59525724-59525743 None:intergenic 30.0%
! CGATTTTGCAACGAAAATAA+GGG + chr5.2:59525396-59525415 None:intergenic 30.0%
! GGGGATTTTCTATATTTCAA+AGG - chr5.2:59525644-59525663 MS.gene44905:intron 30.0%
!! CTTAAAGTGAATGGATTTTG+AGG + chr5.2:59524462-59524481 None:intergenic 30.0%
!! CTTCAAGTTGGAAACAATTA+TGG + chr5.2:59524236-59524255 None:intergenic 30.0%
!!! ATTTTGAGTTAGTGTGTGTT+TGG - chr5.2:59524119-59524138 MS.gene44905:intron 30.0%
!!! TGAGAATTTTGGAGCTTTAT+AGG + chr5.2:59525559-59525578 None:intergenic 30.0%
!!! TTGGTACTTGAAGTTTTGAA+AGG + chr5.2:59525229-59525248 None:intergenic 30.0%
AAAAGTCACAATGTTTCGTG+CGG - chr5.2:59525732-59525751 MS.gene44905:CDS 35.0%
AAGAAACACTGAACAAAACG+AGG + chr5.2:59524062-59524081 None:intergenic 35.0%
AATCGTCAAGGGAAAATATG+CGG - chr5.2:59525411-59525430 MS.gene44905:intron 35.0%
ATCAGCAATGCAAATAGTGA+GGG - chr5.2:59525624-59525643 MS.gene44905:intron 35.0%
CAACGAAAATAAGGGTTGTT+TGG + chr5.2:59525388-59525407 None:intergenic 35.0%
CAGTTACTCTCATCAAGAAA+GGG + chr5.2:59524864-59524883 None:intergenic 35.0%
TAGGACCAAACTTCAAAAGA+CGG + chr5.2:59524916-59524935 None:intergenic 35.0%
TCAGTTACTCTCATCAAGAA+AGG + chr5.2:59524865-59524884 None:intergenic 35.0%
TTTCGTTGCAAAATCGTCAA+GGG - chr5.2:59525400-59525419 MS.gene44905:intron 35.0%
! ACTCTAAAAGCAACTTAGAG+TGG - chr5.2:59524702-59524721 MS.gene44905:intron 35.0%
! GACATATTTGGAATGAGATG+AGG - chr5.2:59524193-59524212 MS.gene44905:CDS 35.0%
! GACCAAAAGTGATTTGTGTT+TGG + chr5.2:59524564-59524583 None:intergenic 35.0%
! TGGAGCTTTATAGGAACATT+TGG + chr5.2:59525550-59525569 None:intergenic 35.0%
! TTATAGGAACATTTGGCTTC+AGG + chr5.2:59525543-59525562 None:intergenic 35.0%
! TTTTCGTTGCAAAATCGTCA+AGG - chr5.2:59525399-59525418 MS.gene44905:intron 35.0%
!! TAGTTCTAGAAAAAGGTCCA+AGG - chr5.2:59525273-59525292 MS.gene44905:intron 35.0%
!!! ATTTGTTTTTGGTTCTCCGT+TGG + chr5.2:59525248-59525267 None:intergenic 35.0%
!!! TTGGACCTTTTTCTAGAACT+AGG + chr5.2:59525274-59525293 None:intergenic 35.0%
AAGCTCCAAAATTCTCATGG+AGG - chr5.2:59525562-59525581 MS.gene44905:intron 40.0%
AGCTCCAAAATTCTCATGGA+GGG - chr5.2:59525563-59525582 MS.gene44905:intron 40.0%
CACACCATTCGCTATACTAT+AGG + chr5.2:59524935-59524954 None:intergenic 40.0%
CATCAGCAATGCAAATAGTG+AGG - chr5.2:59525623-59525642 MS.gene44905:intron 40.0%
CTTCTGATACAACGTGAGTT+TGG + chr5.2:59524642-59524661 None:intergenic 40.0%
GCTACAATTACTGTTCCAGA+TGG - chr5.2:59525025-59525044 MS.gene44905:intron 40.0%
TCAGCAATGCAAATAGTGAG+GGG - chr5.2:59525625-59525644 MS.gene44905:intron 40.0%
TGGTCCTATAGTATAGCGAA+TGG - chr5.2:59524928-59524947 MS.gene44905:intron 40.0%
! AATTCTAGTCCCTCTAGAAG+TGG + chr5.2:59524377-59524396 None:intergenic 40.0%
! AGAGGGACTAGAATTGATTC+TGG - chr5.2:59524382-59524401 MS.gene44905:CDS 40.0%
! ATGTTTGGTTCCACTTCTAG+AGG - chr5.2:59524364-59524383 MS.gene44905:CDS 40.0%
! TGTTTGGTTCCACTTCTAGA+GGG - chr5.2:59524365-59524384 MS.gene44905:CDS 40.0%
!! TCTTTGGAATGAATGGGTGA+GGG + chr5.2:59523873-59523892 None:intergenic 40.0%
!! TTCTTTGGAATGAATGGGTG+AGG + chr5.2:59523874-59523893 None:intergenic 40.0%
!!! AGTGCATGTTTTGACACGTT+TGG + chr5.2:59524833-59524852 None:intergenic 40.0%
!!! ATGTTTTGACACGTTTGGGT+AGG + chr5.2:59524828-59524847 None:intergenic 40.0%
!!! GTAAGCCGTCTTTTGAAGTT+TGG - chr5.2:59524908-59524927 MS.gene44905:intron 40.0%
!!! GTGCATGTTTTGACACGTTT+GGG + chr5.2:59524832-59524851 None:intergenic 40.0%
AAAATTCTCATGGAGGGCAG+TGG - chr5.2:59525569-59525588 MS.gene44905:intron 45.0%
AAATTCTCATGGAGGGCAGT+GGG - chr5.2:59525570-59525589 MS.gene44905:intron 45.0%
ACAACGTGAGTTTGGTTGTG+TGG + chr5.2:59524634-59524653 None:intergenic 45.0%
AGATGGTCGTGTCTGGAAAA+TGG - chr5.2:59525042-59525061 MS.gene44905:intron 45.0%
AGGGACAACAAACTGTCACA+TGG - chr5.2:59525664-59525683 MS.gene44905:intron 45.0%
ATGAATGGGTGAGGGAAGTA+TGG + chr5.2:59523865-59523884 None:intergenic 45.0%
CCAAGGTTGAAACATGTGAG+AGG - chr5.2:59525290-59525309 MS.gene44905:intron 45.0%
CCTCTCACATGTTTCAACCT+TGG + chr5.2:59525293-59525312 None:intergenic 45.0%
GTGTGTTTGAGCTGATCAAG+AGG - chr5.2:59525695-59525714 MS.gene44905:CDS 45.0%
! ACTGCCCTCCATGAGAATTT+TGG + chr5.2:59525570-59525589 None:intergenic 45.0%
! ATTTTCCAGACACGACCATC+TGG + chr5.2:59525043-59525062 None:intergenic 45.0%
! TTGAAACATGTGAGAGGCGT+GGG - chr5.2:59525296-59525315 MS.gene44905:intron 45.0%
!! GTTGTTTGGGTTGAGTTCCT+TGG + chr5.2:59525374-59525393 None:intergenic 45.0%
AAAGTGTGTCCGGACATCAG+CGG - chr5.2:59523809-59523828 MS.gene44905:CDS 50.0%
AAGAGTAGAGGATGCTGCCA+AGG - chr5.2:59525354-59525373 MS.gene44905:intron 50.0%
ACGTGAGTTTGGTTGTGTGG+TGG + chr5.2:59524631-59524650 None:intergenic 50.0%
GTTGAAACATGTGAGAGGCG+TGG - chr5.2:59525295-59525314 MS.gene44905:intron 50.0%
! ATGTGAGAGGCGTGGGAAAA+AGG - chr5.2:59525303-59525322 MS.gene44905:intron 50.0%
ATGTCCGGACACACTTTCGC+CGG + chr5.2:59523806-59523825 None:intergenic 55.0%
CTGTTCCAGATGGTCGTGTC+TGG - chr5.2:59525035-59525054 MS.gene44905:intron 55.0%
!! GGAGGGCAGTGGGAAGTGTT+TGG - chr5.2:59525580-59525599 MS.gene44905:intron 60.0%
CCTTCTCCGCCGCTGATGTC+CGG + chr5.2:59523821-59523840 None:intergenic 65.0%
GTGTGTCCGGACATCAGCGG+CGG - chr5.2:59523812-59523831 MS.gene44905:CDS 65.0%
! CTCGCCGGCGAAAGTGTGTC+CGG - chr5.2:59523799-59523818 MS.gene44905:CDS 65.0%
CCGGACATCAGCGGCGGAGA+AGG - chr5.2:59523818-59523837 MS.gene44905:CDS 70.0%
CGGACACACTTTCGCCGGCG+AGG + chr5.2:59523801-59523820 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 59523792 59525771 59523792 ID=MS.gene44905
chr5.2 mRNA 59523792 59525771 59523792 ID=MS.gene44905.t1;Parent=MS.gene44905
chr5.2 exon 59525667 59525771 59525667 ID=MS.gene44905.t1.exon1;Parent=MS.gene44905.t1
chr5.2 CDS 59525667 59525771 59525667 ID=cds.MS.gene44905.t1;Parent=MS.gene44905.t1
chr5.2 exon 59524131 59524589 59524131 ID=MS.gene44905.t1.exon2;Parent=MS.gene44905.t1
chr5.2 CDS 59524131 59524589 59524131 ID=cds.MS.gene44905.t1;Parent=MS.gene44905.t1
chr5.2 exon 59523792 59524052 59523792 ID=MS.gene44905.t1.exon3;Parent=MS.gene44905.t1
chr5.2 CDS 59523792 59524052 59523792 ID=cds.MS.gene44905.t1;Parent=MS.gene44905.t1
Gene Sequence

>MS.gene44905

ATGCAGCCTCGCCGGCGAAAGTGTGTCCGGACATCAGCGGCGGAGAAGGAATCAAAACATTTTATGAAAGCCATACTTCCCTCACCCATTCATTCCAAAGAAATAGTAAGCTTCACTTTCTCTCCCTTGTTTTGTACTTTTATTATGCATGCATGTCAATTAAATATTATTATTCATTTTATAAAATTATTAACTTCTTCAATGTAATTGAGATCCTTTTTGACTTTTTTTTTTTTTGGTGTGCATGTGTGTGTTAGCATGTTGATACCTCGTTTTGTTCAGTGTTTCTTTTATTCAATGGTTTTAAAATTTGTTTTTGAATCTTTTATTTTGAGTTAGTGTGTGTTTGGTTTCACTTTTTGATGAGACAAAATTGATTTTAGAGATGTAAAATTGATTTTGACATATTTGGAATGAGATGAGGTAGAATTGATTTTGTATCCATAATTGTTTCCAACTTGAAGTTAGAATTTAATTTGGAGTTTTTGTCTGTACATATTACAATAACTTGTGTTTGATTACATTCCCTTAGTTGAATTGAAAGTGATTACATAGTGCATACTTTACTTAGTATGTTTGGTTCCACTTCTAGAGGGACTAGAATTGATTCTGGATGTGTAGAATTGATTTTGACATGTTTGGTTGCTGTCGACTAGAATTGATTCTACCTCAAAATCCATTCACTTTAAGCTAGGATTTGTAGATTTTGATTCTTGAATTGGTTTTCACACACAAATTTATAGTTCGACTCACTTTTACATGAATGTATCCAAACACAAATCACTTTTGGTCAGAATTACTTTTAACCAAAATCAATTCTAGAGAATCAATTCTCTCCACCACACAACCAAACTCACGTTGTATCAGAAGTGACTTATATTTTGATCACACTCTCTTAAAAGTGAATTCAACTCTAAAAGCAACTTAGAGTGGAAAACTTCAAATCCTAACTTCAAATTAGAATTTATTCTCGACTCAAGCAATTTTACCCAAAGCTGCCAACATAAATTTTATGTATATGAAATCACTTTTGCCTACCCAAACGTGTCAAAACATGCACTAATCGTAACCCTTTCTTGATGAGAGTAACTGAAATTGTGAAAATCTCATAAGCATGTAAGCCGTCTTTTGAAGTTTGGTCCTATAGTATAGCGAATGGTGTGTTATCACTTTTCAATGCAGAGAATTCCAGATGAATTTATATCAAGATTTGGGAATGAACTCAAGAATGTTGCTACAATTACTGTTCCAGATGGTCGTGTCTGGAAAATGGAACTGAAGAAACATGATGAGAACGTTTTCTTTTGCAACAAATGGCAAGAGTTTGTAGAATACTATTCTATAGGATATGGTTGCTTCCTTTCTTTCAAATATGAAGGGAATTCAAAGTTTAGTGCTATTATATTTGATGCAACTTCTGTTGAAATTTGCTATCCTTTCAAAACTTCAAGTACCAACGGAGAACCAAAAACAAATTATCCTAGTTCTAGAAAAAGGTCCAAGGTTGAAACATGTGAGAGGCGTGGGAAAAAGGTCAAAAACATGTCTAAATATGCTTCTAAAAGAGTAGAGGATGCTGCCAAGGAACTCAACCCAAACAACCCTTATTTTCGTTGCAAAATCGTCAAGGGAAAATATGCGGTGAGAATTTTACTCTAAAGAAAATGTTGATCAGTTATTTATGTTTCGACTTAAATTGATCTCTCATCCATTGTGCAGTATGTTAATTATGATTTTGCTACAAAGTACCTGAAGCCAAATGTTCCTATAAAGCTCCAAAATTCTCATGGAGGGCAGTGGGAAGTGTTTGGCATTATTCATGATGTCAGATCATCAGCAATGCAAATAGTGAGGGGATTTTCTATATTTCAAAGGGACAACAAACTGTCACATGGAGATTATTGTGTGTTTGAGCTGATCAAGAGGAGACCGATTGTGCTAAAAGTCACAATGTTTCGTGCGGTTGACTATTGCGATTAA
Protein sequence

>MS.gene44905.t1

MQPRRRKCVRTSAAEKESKHFMKAILPSPIHSKEIRIPDEFISRFGNELKNVATITVPDGRVWKMELKKHDENVFFCNKWQEFVEYYSIGYGCFLSFKYEGNSKFSAIIFDATSVEICYPFKTSSTNGEPKTNYPSSRKRSKVETCERRGKKVKNMSKYASKRVEDAAKELNPNNPYFRCKIVKGKYAYVNYDFATKYLKPNVPIKLQNSHGGQWEVFGIIHDVRSSAMQIVRGFSIFQRDNKLSHGDYCVFELIKRRPIVLKVTMFRAVDYCD