AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene44932

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene44932.t1 MTR_8g079660 73.106 264 31 1 6 229 1 264 3.56e-125 355
MS.gene44932.t1 MTR_8g079620 54.478 268 41 4 6 231 1 229 3.33e-87 258
MS.gene44932.t1 MTR_8g079580 61.957 92 34 1 6 96 1 92 4.03e-34 122
MS.gene44932.t1 MTR_3g452660 50.000 102 48 1 13 111 7 108 1.24e-30 115
MS.gene44932.t1 MTR_3g073690 55.294 85 38 0 13 97 9 93 1.39e-30 112
MS.gene44932.t1 MTR_5g017950 57.143 84 36 0 13 96 8 91 2.66e-30 114
MS.gene44932.t1 MTR_2g093310 49.438 89 45 0 8 96 28 116 2.06e-27 103
MS.gene44932.t1 MTR_4g105170 51.190 84 41 0 13 96 11 94 3.72e-27 103
MS.gene44932.t1 MTR_4g083680 45.536 112 57 1 13 124 15 122 4.03e-27 102
MS.gene44932.t1 MTR_6g005080 48.810 84 43 0 13 96 10 93 6.65e-27 101
MS.gene44932.t1 MTR_3g077240 51.190 84 41 0 13 96 10 93 7.30e-27 102
MS.gene44932.t1 MTR_8g040900 53.846 78 36 0 13 90 7 84 8.96e-27 103
MS.gene44932.t1 MTR_7g033800 50.000 84 42 0 13 96 11 94 9.07e-27 101
MS.gene44932.t1 MTR_5g083230 43.697 119 60 2 13 131 6 117 9.54e-27 101
MS.gene44932.t1 MTR_6g005070 50.000 84 42 0 13 96 9 92 1.04e-26 100
MS.gene44932.t1 MTR_3g031660 50.000 84 42 0 13 96 7 90 4.93e-26 100
MS.gene44932.t1 MTR_4g060950 48.315 89 45 1 9 96 20 108 5.51e-25 97.4
MS.gene44932.t1 MTR_2g068760 48.837 86 44 0 11 96 11 96 7.09e-25 96.3
MS.gene44932.t1 MTR_3g071590 49.412 85 43 0 13 97 8 92 8.31e-25 96.3
MS.gene44932.t1 MTR_3g094690 50.000 86 43 0 11 96 45 130 5.70e-24 96.3
MS.gene44932.t1 MTR_5g083960 48.810 84 43 0 13 96 39 122 7.31e-24 94.7
MS.gene44932.t1 MTR_1g095850 40.458 131 72 2 14 142 73 199 7.34e-24 95.5
MS.gene44932.t1 MTR_3g094690 51.163 86 41 1 11 96 45 129 4.17e-23 94.0
MS.gene44932.t1 MTR_5g083010 50.602 83 41 0 14 96 12 94 6.01e-23 92.0
MS.gene44932.t1 MTR_5g075020 47.500 80 42 0 11 90 41 120 3.25e-22 91.3
MS.gene44932.t1 MTR_5g075020 47.500 80 42 0 11 90 45 124 4.76e-22 90.9
MS.gene44932.t1 MTR_3g071420 50.602 83 41 0 14 96 15 97 7.16e-22 89.4
MS.gene44932.t1 MTR_6g027710 48.750 80 40 1 10 88 37 116 2.24e-21 89.0
MS.gene44932.t1 MTR_4g099230 47.436 78 40 1 14 90 3 80 6.71e-21 85.9
MS.gene44932.t1 MTR_5g093010 42.529 87 50 0 9 95 1 87 1.01e-20 85.1
MS.gene44932.t1 MTR_7g028905 36.937 111 65 2 9 115 1 110 1.19e-20 84.3
MS.gene44932.t1 MTR_1g070220 36.923 130 77 2 13 137 15 144 1.91e-20 86.3
MS.gene44932.t1 MTR_6g027700 45.238 84 44 2 6 88 1 83 3.38e-20 85.5
MS.gene44932.t1 MTR_7g096530 37.288 118 62 2 13 129 14 120 7.10e-20 84.7
MS.gene44932.t1 MTR_7g074990 43.529 85 47 1 13 96 20 104 3.02e-17 78.2
MS.gene44932.t1 MTR_6g011250 42.308 78 44 1 14 90 10 87 5.09e-17 76.3
MS.gene44932.t1 MTR_8g036105 43.529 85 47 1 13 96 18 102 1.90e-16 75.5
MS.gene44932.t1 MTR_8g017090 38.554 83 51 0 14 96 13 95 2.53e-16 76.6
MS.gene44932.t1 MTR_8g036085 39.535 86 51 1 13 97 23 108 2.80e-16 75.5
MS.gene44932.t1 MTR_1g070205 37.963 108 62 2 13 119 12 115 4.70e-16 74.7
MS.gene44932.t1 MTR_6g011200 37.647 85 49 2 10 90 3 87 1.55e-15 73.6
MS.gene44932.t1 MTR_2g100020 34.211 114 63 2 12 125 18 119 1.83e-15 73.9
MS.gene44932.t1 MTR_7g096610 37.037 108 63 2 13 119 8 111 2.70e-15 72.8
MS.gene44932.t1 MTR_4g107450 38.824 85 52 0 12 96 9 93 3.18e-15 73.6
MS.gene44932.t1 MTR_6g011230 37.662 77 48 0 12 88 10 86 6.17e-15 71.2
MS.gene44932.t1 MTR_5g085390 41.176 85 46 2 10 90 3 87 1.90e-14 70.5
MS.gene44932.t1 MTR_5g080470 39.286 84 50 1 14 96 8 91 6.25e-14 68.2
MS.gene44932.t1 MTR_4g088035 34.483 87 57 0 14 100 7 93 5.48e-13 67.0
MS.gene44932.t1 MTR_7g075230 35.135 111 65 3 13 116 12 122 2.40e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene44932.t1 AT1G07900 34.831 178 96 2 8 185 28 185 2.74e-29 108
MS.gene44932.t1 AT5G66870 54.762 84 38 0 13 96 7 90 6.18e-28 108
MS.gene44932.t1 AT3G27650 48.387 93 48 0 4 96 30 122 6.43e-28 104
MS.gene44932.t1 AT2G23660 53.571 84 39 0 13 96 5 88 1.96e-27 107
MS.gene44932.t1 AT2G23660 53.571 84 39 0 13 96 5 88 1.96e-27 107
MS.gene44932.t1 AT2G23660 53.571 84 39 0 13 96 5 88 1.96e-27 107
MS.gene44932.t1 AT1G65620 55.128 78 35 0 13 90 9 86 2.19e-27 103
MS.gene44932.t1 AT1G65620 55.128 78 35 0 13 90 9 86 2.19e-27 103
MS.gene44932.t1 AT1G65620 55.128 78 35 0 13 90 9 86 2.19e-27 103
MS.gene44932.t1 AT1G65620 55.128 78 35 0 13 90 9 86 2.19e-27 103
MS.gene44932.t1 AT1G65620 55.128 78 35 0 13 90 9 86 2.19e-27 103
MS.gene44932.t1 AT2G28500 41.463 123 68 1 9 131 51 169 3.80e-27 104
MS.gene44932.t1 AT2G30130 44.167 120 60 2 13 132 8 120 7.28e-27 102
MS.gene44932.t1 AT5G63090 51.190 84 41 0 13 96 11 94 9.45e-27 102
MS.gene44932.t1 AT5G63090 51.190 84 41 0 13 96 11 94 9.45e-27 102
MS.gene44932.t1 AT5G63090 51.190 84 41 0 13 96 11 94 9.45e-27 102
MS.gene44932.t1 AT5G63090 51.190 84 41 0 13 96 11 94 9.45e-27 102
MS.gene44932.t1 AT1G31320 50.000 84 42 0 13 96 13 96 1.81e-25 98.6
MS.gene44932.t1 AT1G16530 41.176 119 64 3 11 127 12 126 5.79e-25 97.1
MS.gene44932.t1 AT2G40470 52.500 80 38 0 11 90 18 97 6.37e-24 95.1
MS.gene44932.t1 AT3G26620 38.053 113 68 1 14 126 6 116 9.74e-24 92.4
MS.gene44932.t1 AT2G40470 52.500 80 38 0 11 90 43 122 1.10e-23 95.1
MS.gene44932.t1 AT3G26660 36.441 118 73 1 14 131 6 121 1.11e-23 92.0
MS.gene44932.t1 AT2G30340 48.837 86 44 0 11 96 51 136 4.83e-23 94.4
MS.gene44932.t1 AT2G30340 48.837 86 44 0 11 96 50 135 4.95e-23 94.4
MS.gene44932.t1 AT3G11090 46.988 83 44 0 14 96 12 94 2.06e-21 87.4
MS.gene44932.t1 AT4G00210 45.882 85 45 1 13 96 11 95 1.54e-18 81.3
MS.gene44932.t1 AT1G72980 40.964 83 49 0 14 96 14 96 2.73e-18 80.5
MS.gene44932.t1 AT3G03760 43.529 85 47 1 13 96 51 135 1.06e-17 80.1
MS.gene44932.t1 AT3G47870 39.759 83 50 0 14 96 37 119 1.13e-17 80.9
MS.gene44932.t1 AT2G42430 40.541 111 60 3 13 118 15 124 1.60e-17 79.0
MS.gene44932.t1 AT5G35900 40.476 84 50 0 14 97 6 89 2.48e-17 77.8
MS.gene44932.t1 AT3G50510 38.372 86 53 0 10 95 9 94 1.97e-16 75.1
MS.gene44932.t1 AT3G50510 38.372 86 53 0 10 95 9 94 1.97e-16 75.1
MS.gene44932.t1 AT3G13850 31.250 128 84 2 14 138 37 163 2.33e-15 73.6
MS.gene44932.t1 AT1G06280 38.961 77 47 0 14 90 25 101 5.82e-15 71.2
MS.gene44932.t1 AT2G45410 43.902 82 45 1 16 96 19 100 6.93e-15 70.9
MS.gene44932.t1 AT3G58190 40.000 85 50 1 13 96 11 95 8.10e-15 71.2
MS.gene44932.t1 AT4G00220 39.759 83 49 1 16 97 20 102 1.13e-14 70.9
MS.gene44932.t1 AT2G42440 37.647 85 52 1 13 96 7 91 1.77e-14 70.9
MS.gene44932.t1 AT2G45420 39.024 82 49 1 16 96 40 121 3.67e-14 70.1
MS.gene44932.t1 AT2G31310 35.294 85 54 1 13 96 7 91 4.62e-13 65.9
MS.gene44932.t1 AT5G06080 39.744 78 46 1 14 90 8 85 6.79e-13 65.1

Find 69 sgRNAs with CRISPR-Local

Find 85 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTGTTCTTATTCGTGATTC+TGG 0.159844 8.1:+28095797 MS.gene44932:CDS
ATCTCTCTTATTATTCTTGT+TGG 0.231044 8.1:-28095922 None:intergenic
TAATATCGCATGGCATTGTT+AGG 0.348965 8.1:+28095010 None:intergenic
ATCAAGGTACACTCTGTGTT+TGG 0.360225 8.1:+28095247 MS.gene44932:CDS
CTACCTTGAAGGTCATTTGC+TGG 0.366573 8.1:-28095391 None:intergenic
GTGTTCTTATTCGTGATTCT+GGG 0.366901 8.1:+28095798 MS.gene44932:CDS
TGAACAAGTTATTGAATCAT+TGG 0.367700 8.1:+28095318 MS.gene44932:CDS
GAGATGCTTGCACGCTGCGC+AGG 0.370465 8.1:-28095158 None:intergenic
TTAAAACAAAAGCTTCTTAG+TGG 0.403319 8.1:+28095629 MS.gene44932:CDS
ATAGTATCAGCCCTAGAAAA+AGG 0.404708 8.1:-28095878 None:intergenic
GGACCCGCACAGCCATAGAC+TGG 0.409028 8.1:-28095370 None:intergenic
ATGAAACGCTCCGGGTTGTC+AGG 0.419582 8.1:-28095226 None:intergenic
GTTGGTGGTGGTTCTGTCAA+TGG 0.425339 8.1:+28095740 MS.gene44932:CDS
GAGGAACGTCAGGAAGCATC+TGG 0.426271 8.1:-28095832 None:intergenic
AGGTTGAGGGACCCAGTCTA+TGG 0.429899 8.1:+28095358 MS.gene44932:CDS
TAAGAACACCAGCATCCATC+TGG 0.433980 8.1:-28095784 None:intergenic
TTGACAGAACCACCACCAAC+AGG 0.441240 8.1:-28095737 None:intergenic
GACAGTCGGTGCAAGACAAT+TGG 0.445989 8.1:+28095547 MS.gene44932:CDS
ATTCGTGATTCTGGGTTGGC+AGG 0.446568 8.1:+28095806 MS.gene44932:CDS
AGCGTGCAAGCATCTCCATC+AGG 0.453957 8.1:+28095165 MS.gene44932:CDS
CTTCATTCAACCTACCTTGA+AGG 0.457276 8.1:-28095402 None:intergenic
GCCAACCGATCATCACCATC+GGG 0.457743 8.1:-28095653 None:intergenic
CAGGAACATTAACATCCATC+TGG 0.471455 8.1:-28095682 None:intergenic
GACCCAGTCTATGGCTGTGC+GGG 0.475222 8.1:+28095367 MS.gene44932:CDS
AGCTTGAGTCGCACTCCTGA+TGG 0.478745 8.1:-28095180 None:intergenic
GATGGTGATGATCGGTTGGC+AGG 0.484290 8.1:+28095656 MS.gene44932:CDS
AGATGCTTGCACGCTGCGCA+GGG 0.487123 8.1:-28095157 None:intergenic
GGGTTGTCAGGTGGAAAGTA+AGG 0.500064 8.1:-28095214 None:intergenic
TATTGAATCATTGGTGTATG+AGG 0.501617 8.1:+28095327 MS.gene44932:CDS
TGAGGTTGAGGCCAGGTTGA+GGG 0.503784 8.1:+28095345 MS.gene44932:CDS
AGGTCCCACCCTGTTGGTGG+TGG 0.515024 8.1:+28095728 MS.gene44932:CDS
ATGAGGTTGAGGCCAGGTTG+AGG 0.520828 8.1:+28095344 MS.gene44932:CDS
ATCATTGGTGTATGAGGTTG+AGG 0.522690 8.1:+28095333 MS.gene44932:CDS
GTAAGACTCCAGATGGATGC+TGG 0.524136 8.1:+28095776 MS.gene44932:CDS
GCATCAATATGAGGAACGTC+AGG 0.525070 8.1:-28095842 None:intergenic
GTTAATGTTCCTGTTGAAAA+CGG 0.528434 8.1:+28095692 MS.gene44932:CDS
ACTAGGTCCCACCCTGTTGG+TGG 0.529498 8.1:+28095725 MS.gene44932:CDS
TGCCAACCGATCATCACCAT+CGG 0.530317 8.1:-28095654 None:intergenic
TCTTATTCGTGATTCTGGGT+TGG 0.544358 8.1:+28095802 MS.gene44932:CDS
CCCCGATGGTGATGATCGGT+TGG 0.544996 8.1:+28095652 MS.gene44932:CDS
TGTACCTTGATGAAACGCTC+CGG 0.546143 8.1:-28095235 None:intergenic
ATAGAAGGAGCATCAATATG+AGG 0.546954 8.1:-28095851 None:intergenic
GGTCCAGCAAATGACCTTCA+AGG 0.548176 8.1:+28095388 MS.gene44932:CDS
ATAGACTGGGTCCCTCAACC+TGG 0.566639 8.1:-28095356 None:intergenic
AAAACGGTGGCACTAGTACT+AGG 0.572087 8.1:+28095708 MS.gene44932:CDS
GATGCTTGCACGCTGCGCAG+GGG 0.574188 8.1:-28095156 None:intergenic
GACCCGCACAGCCATAGACT+GGG 0.578830 8.1:-28095369 None:intergenic
GTACCTTGATGAAACGCTCC+GGG 0.582999 8.1:-28095234 None:intergenic
AAACGCTCCGGGTTGTCAGG+TGG 0.583405 8.1:-28095223 None:intergenic
AAGCTTCTTAGTGGCCCCGA+TGG 0.587409 8.1:+28095638 MS.gene44932:CDS
TTACTTTCCACCTGACAACC+CGG 0.587420 8.1:+28095216 MS.gene44932:CDS
AGTACTAGGTCCCACCCTGT+TGG 0.592718 8.1:+28095722 MS.gene44932:CDS
TGGTGTATGAGGTTGAGGCC+AGG 0.593421 8.1:+28095338 MS.gene44932:CDS
CAACCCGGAGCGTTTCATCA+AGG 0.598807 8.1:+28095231 MS.gene44932:CDS
TGTCAATGGCAGTAGTGACT+CGG 0.601157 8.1:+28095754 MS.gene44932:CDS
TGACTCGGTAAGACTCCAGA+TGG 0.609708 8.1:+28095769 MS.gene44932:CDS
CTTGCACCGACTGTCATAGT+CGG 0.618697 8.1:-28095539 None:intergenic
GGACCCAGTCTATGGCTGTG+CGG 0.622378 8.1:+28095366 MS.gene44932:CDS
AGGAACGTCAGGAAGCATCT+GGG 0.633933 8.1:-28095831 None:intergenic
AGAACCACCACCAACAGGGT+GGG 0.644655 8.1:-28095732 None:intergenic
TCGGTTGGCAGGATTCCAGA+TGG 0.645111 8.1:+28095667 MS.gene44932:CDS
GTGGCCCCGATGGTGATGAT+CGG 0.652206 8.1:+28095648 MS.gene44932:CDS
TGACAGAACCACCACCAACA+GGG 0.675621 8.1:-28095736 None:intergenic
CAGAACCACCACCAACAGGG+TGG 0.682884 8.1:-28095733 None:intergenic
AGGGCTGATACTATTGACAA+TGG 0.685373 8.1:+28095887 MS.gene44932:CDS
CAGGTGGAAAGTAAGGAGCA+AGG 0.685400 8.1:-28095207 None:intergenic
TCTGCACCGACTATGACAGT+CGG 0.696288 8.1:+28095533 MS.gene44932:CDS
AATGTTCCTGTTGAAAACGG+TGG 0.735325 8.1:+28095695 MS.gene44932:CDS
CCAACCGATCATCACCATCG+GGG 0.756035 8.1:-28095652 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAAAAAAAATATAGACAA+TGG + chr8.1:28095035-28095054 MS.gene44932:intron 15.0%
! TGAACAAGTTATTGAATCAT+TGG + chr8.1:28095318-28095337 MS.gene44932:CDS 25.0%
! TTAAAACAAAAGCTTCTTAG+TGG + chr8.1:28095629-28095648 MS.gene44932:CDS 25.0%
GTTAATGTTCCTGTTGAAAA+CGG + chr8.1:28095692-28095711 MS.gene44932:CDS 30.0%
GTTAATTTAATGTGCAGTGA+TGG + chr8.1:28095117-28095136 MS.gene44932:intron 30.0%
TATTGAATCATTGGTGTATG+AGG + chr8.1:28095327-28095346 MS.gene44932:CDS 30.0%
! TTCTATGCTTCCTTTTTCTA+GGG + chr8.1:28095868-28095887 MS.gene44932:CDS 30.0%
ATAGTATCAGCCCTAGAAAA+AGG - chr8.1:28095881-28095900 None:intergenic 35.0%
GTGTTCTTATTCGTGATTCT+GGG + chr8.1:28095798-28095817 MS.gene44932:CDS 35.0%
! CTAGAAAAAGGAAGCATAGA+AGG - chr8.1:28095869-28095888 None:intergenic 35.0%
! CTTCTATGCTTCCTTTTTCT+AGG + chr8.1:28095867-28095886 MS.gene44932:CDS 35.0%
! TAGGTTGAATGAAGTTCGAA+CGG + chr8.1:28095411-28095430 MS.gene44932:intron 35.0%
!! ATAGAAGGAGCATCAATATG+AGG - chr8.1:28095854-28095873 None:intergenic 35.0%
!!! ATTGGCTTTTAATCAGCTGT+CGG + chr8.1:28095565-28095584 MS.gene44932:CDS 35.0%
AAAGCCGAAACAATCAGGAA+AGG - chr8.1:28095501-28095520 None:intergenic 40.0%
AATGTTCCTGTTGAAAACGG+TGG + chr8.1:28095695-28095714 MS.gene44932:CDS 40.0%
AGGGCTGATACTATTGACAA+TGG + chr8.1:28095887-28095906 MS.gene44932:CDS 40.0%
ATCAAGGTACACTCTGTGTT+TGG + chr8.1:28095247-28095266 MS.gene44932:CDS 40.0%
ATCATTGGTGTATGAGGTTG+AGG + chr8.1:28095333-28095352 MS.gene44932:CDS 40.0%
CAGGAACATTAACATCCATC+TGG - chr8.1:28095685-28095704 None:intergenic 40.0%
CTTCATTCAACCTACCTTGA+AGG - chr8.1:28095405-28095424 None:intergenic 40.0%
GGTGTTCTTATTCGTGATTC+TGG + chr8.1:28095797-28095816 MS.gene44932:CDS 40.0%
TCTTATTCGTGATTCTGGGT+TGG + chr8.1:28095802-28095821 MS.gene44932:CDS 40.0%
AAAACGGTGGCACTAGTACT+AGG + chr8.1:28095708-28095727 MS.gene44932:CDS 45.0%
AGAACAAGTTCAACGACCTG+AGG - chr8.1:28095476-28095495 None:intergenic 45.0%
CAGCAAATGACCTTCAAGGT+AGG + chr8.1:28095392-28095411 MS.gene44932:intron 45.0%
CTACCTTGAAGGTCATTTGC+TGG - chr8.1:28095394-28095413 None:intergenic 45.0%
CTCGCCTTTCCTGATTGTTT+CGG + chr8.1:28095494-28095513 MS.gene44932:intron 45.0%
GCATCAATATGAGGAACGTC+AGG - chr8.1:28095845-28095864 None:intergenic 45.0%
GGCTTAAAGCCGAAACAATC+AGG - chr8.1:28095506-28095525 None:intergenic 45.0%
TAAGAACACCAGCATCCATC+TGG - chr8.1:28095787-28095806 None:intergenic 45.0%
TGTACCTTGATGAAACGCTC+CGG - chr8.1:28095238-28095257 None:intergenic 45.0%
TGTCAATGGCAGTAGTGACT+CGG + chr8.1:28095754-28095773 MS.gene44932:CDS 45.0%
TTACTTTCCACCTGACAACC+CGG + chr8.1:28095216-28095235 MS.gene44932:CDS 45.0%
ATAGTCGGTGCAGATGCATC+TGG - chr8.1:28095527-28095546 None:intergenic 50.0%
CAGGTGGAAAGTAAGGAGCA+AGG - chr8.1:28095210-28095229 None:intergenic 50.0%
CTCGAGTGTGAAGAACGAAC+TGG + chr8.1:28095436-28095455 MS.gene44932:intron 50.0%
GACAGTCGGTGCAAGACAAT+TGG + chr8.1:28095547-28095566 MS.gene44932:CDS 50.0%
GGGTTGTCAGGTGGAAAGTA+AGG - chr8.1:28095217-28095236 None:intergenic 50.0%
GGTCCAGCAAATGACCTTCA+AGG + chr8.1:28095388-28095407 MS.gene44932:CDS 50.0%
GTAAGACTCCAGATGGATGC+TGG + chr8.1:28095776-28095795 MS.gene44932:CDS 50.0%
GTACCTTGATGAAACGCTCC+GGG - chr8.1:28095237-28095256 None:intergenic 50.0%
TGACAGAACCACCACCAACA+GGG - chr8.1:28095739-28095758 None:intergenic 50.0%
TGCCAACCGATCATCACCAT+CGG - chr8.1:28095657-28095676 None:intergenic 50.0%
TTGACAGAACCACCACCAAC+AGG - chr8.1:28095740-28095759 None:intergenic 50.0%
! CTAGTGCCACCGTTTTCAAC+AGG - chr8.1:28095704-28095723 None:intergenic 50.0%
! GACCTGAGGACTGAGGTATT+TGG - chr8.1:28095462-28095481 None:intergenic 50.0%
!! AGGAACGTCAGGAAGCATCT+GGG - chr8.1:28095834-28095853 None:intergenic 50.0%
!! ATTCGTGATTCTGGGTTGGC+AGG + chr8.1:28095806-28095825 MS.gene44932:CDS 50.0%
!! CTTGCACCGACTGTCATAGT+CGG - chr8.1:28095542-28095561 None:intergenic 50.0%
!! GTTGGTGGTGGTTCTGTCAA+TGG + chr8.1:28095740-28095759 MS.gene44932:CDS 50.0%
!! TCTGCACCGACTATGACAGT+CGG + chr8.1:28095533-28095552 MS.gene44932:CDS 50.0%
!! TGACTCGGTAAGACTCCAGA+TGG + chr8.1:28095769-28095788 MS.gene44932:CDS 50.0%
AAGCTTCTTAGTGGCCCCGA+TGG + chr8.1:28095638-28095657 MS.gene44932:CDS 55.0%
AGAACCACCACCAACAGGGT+GGG - chr8.1:28095735-28095754 None:intergenic 55.0%
AGCGTGCAAGCATCTCCATC+AGG + chr8.1:28095165-28095184 MS.gene44932:CDS 55.0%
AGCTTGAGTCGCACTCCTGA+TGG - chr8.1:28095183-28095202 None:intergenic 55.0%
AGGTTGAGGGACCCAGTCTA+TGG + chr8.1:28095358-28095377 MS.gene44932:CDS 55.0%
AGTACTAGGTCCCACCCTGT+TGG + chr8.1:28095722-28095741 MS.gene44932:CDS 55.0%
ATAGACTGGGTCCCTCAACC+TGG - chr8.1:28095359-28095378 None:intergenic 55.0%
ATGAAACGCTCCGGGTTGTC+AGG - chr8.1:28095229-28095248 None:intergenic 55.0%
ATGAGGTTGAGGCCAGGTTG+AGG + chr8.1:28095344-28095363 MS.gene44932:CDS 55.0%
CCAACCGATCATCACCATCG+GGG - chr8.1:28095655-28095674 None:intergenic 55.0%
GCCAACCGATCATCACCATC+GGG - chr8.1:28095656-28095675 None:intergenic 55.0%
GGCCAAATACCTCAGTCCTC+AGG + chr8.1:28095457-28095476 MS.gene44932:intron 55.0%
GTTCAACGACCTGAGGACTG+AGG - chr8.1:28095469-28095488 None:intergenic 55.0%
TCGGTTGGCAGGATTCCAGA+TGG + chr8.1:28095667-28095686 MS.gene44932:CDS 55.0%
TGGTGTATGAGGTTGAGGCC+AGG + chr8.1:28095338-28095357 MS.gene44932:CDS 55.0%
! CAACCCGGAGCGTTTCATCA+AGG + chr8.1:28095231-28095250 MS.gene44932:CDS 55.0%
! GATGGTGATGATCGGTTGGC+AGG + chr8.1:28095656-28095675 MS.gene44932:CDS 55.0%
! TGAGGTTGAGGCCAGGTTGA+GGG + chr8.1:28095345-28095364 MS.gene44932:CDS 55.0%
!! GAGGAACGTCAGGAAGCATC+TGG - chr8.1:28095835-28095854 None:intergenic 55.0%
AAACGCTCCGGGTTGTCAGG+TGG - chr8.1:28095226-28095245 None:intergenic 60.0%
ACTAGGTCCCACCCTGTTGG+TGG + chr8.1:28095725-28095744 MS.gene44932:CDS 60.0%
AGATGCTTGCACGCTGCGCA+GGG - chr8.1:28095160-28095179 None:intergenic 60.0%
CAGAACCACCACCAACAGGG+TGG - chr8.1:28095736-28095755 None:intergenic 60.0%
GACCCAGTCTATGGCTGTGC+GGG + chr8.1:28095367-28095386 MS.gene44932:CDS 60.0%
GACCCGCACAGCCATAGACT+GGG - chr8.1:28095372-28095391 None:intergenic 60.0%
GGACCCAGTCTATGGCTGTG+CGG + chr8.1:28095366-28095385 MS.gene44932:CDS 60.0%
! CCCCGATGGTGATGATCGGT+TGG + chr8.1:28095652-28095671 MS.gene44932:CDS 60.0%
! GTGGCCCCGATGGTGATGAT+CGG + chr8.1:28095648-28095667 MS.gene44932:CDS 60.0%
GAGATGCTTGCACGCTGCGC+AGG - chr8.1:28095161-28095180 None:intergenic 65.0%
GATGCTTGCACGCTGCGCAG+GGG - chr8.1:28095159-28095178 None:intergenic 65.0%
GGACCCGCACAGCCATAGAC+TGG - chr8.1:28095373-28095392 None:intergenic 65.0%
! AGGTCCCACCCTGTTGGTGG+TGG + chr8.1:28095728-28095747 MS.gene44932:CDS 65.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 28095019 28095934 28095019 ID=MS.gene44932
chr8.1 mRNA 28095019 28095934 28095019 ID=MS.gene44932.t1;Parent=MS.gene44932
chr8.1 exon 28095019 28095031 28095019 ID=MS.gene44932.t1.exon1;Parent=MS.gene44932.t1
chr8.1 CDS 28095019 28095031 28095019 ID=cds.MS.gene44932.t1;Parent=MS.gene44932.t1
chr8.1 exon 28095134 28095409 28095134 ID=MS.gene44932.t1.exon2;Parent=MS.gene44932.t1
chr8.1 CDS 28095134 28095409 28095134 ID=cds.MS.gene44932.t1;Parent=MS.gene44932.t1
chr8.1 exon 28095528 28095934 28095528 ID=MS.gene44932.t1.exon3;Parent=MS.gene44932.t1
chr8.1 CDS 28095528 28095934 28095528 ID=cds.MS.gene44932.t1;Parent=MS.gene44932.t1
Gene Sequence

>MS.gene44932

ATGGCATTGTTAGGTCAAGAAAAAAAATATAGACAATGGATTTCGTTTTCACTTTTTGTGTTATATATTGTTGTTGAATGAACTTAGTAATTGAATTTGTTAATTTAATGTGCAGTGATGGCAAGAGTGATTATTCGCCCCTGCGCAGCGTGCAAGCATCTCCATCAGGAGTGCGACTCAAGCTGTGACCTTGCTCCTTACTTTCCACCTGACAACCCGGAGCGTTTCATCAAGGTACACTCTGTGTTTGGAAAGAACAATGTGTCGAATATGTTGAAAAAACTTGATGCTTCACATCATGAACAAGTTATTGAATCATTGGTGTATGAGGTTGAGGCCAGGTTGAGGGACCCAGTCTATGGCTGTGCGGGTCCAGCAAATGACCTTCAAGGTAGGTTGAATGAAGTTCGAACGGAACTCGAGTGTGAAGAACGAACTGGCCAAATACCTCAGTCCTCAGGTCGTTGAACTTGTTCTCGCCTTTCCTGATTGTTTCGGCTTTAAGCCAGATGCATCTGCACCGACTATGACAGTCGGTGCAAGACAATTGGCTTTTAATCAGCTGTCGGCTGCTGAGTTGACGACTCAACAGATTCACAACTTAGAAGTGTTAAAACAAAAGCTTCTTAGTGGCCCCGATGGTGATGATCGGTTGGCAGGATTCCAGATGGATGTTAATGTTCCTGTTGAAAACGGTGGCACTAGTACTAGGTCCCACCCTGTTGGTGGTGGTTCTGTCAATGGCAGTAGTGACTCGGTAAGACTCCAGATGGATGCTGGTGTTCTTATTCGTGATTCTGGGTTGGCAGGATCCCAGATGCTTCCTGACGTTCCTCATATTGATGCTCCTTCTATGCTTCCTTTTTCTAGGGCTGATACTATTGACAATGGTGAGACTAGCAACCAACAAGAATAA
Protein sequence

>MS.gene44932.t1

MALLVMARVIIRPCAACKHLHQECDSSCDLAPYFPPDNPERFIKVHSVFGKNNVSNMLKKLDASHHEQVIESLVYEVEARLRDPVYGCAGPANDLQDASAPTMTVGARQLAFNQLSAAELTTQQIHNLEVLKQKLLSGPDGDDRLAGFQMDVNVPVENGGTSTRSHPVGGGSVNGSSDSVRLQMDAGVLIRDSGLAGSQMLPDVPHIDAPSMLPFSRADTIDNGETSNQQE