AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene44933

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene44933.t1 MTR_8g079620 84.030 263 17 2 1 263 1 238 3.77e-156 434
MS.gene44933.t1 MTR_8g079660 74.525 263 55 1 1 251 1 263 4.10e-141 397
MS.gene44933.t1 MTR_8g079580 38.583 254 107 5 1 251 1 208 1.10e-46 155
MS.gene44933.t1 MTR_5g017950 54.054 111 51 0 8 118 8 118 6.41e-36 130
MS.gene44933.t1 MTR_3g073690 51.818 110 53 0 8 117 9 118 2.98e-35 125
MS.gene44933.t1 MTR_3g452660 44.970 169 71 4 8 155 7 174 9.29e-35 126
MS.gene44933.t1 MTR_4g105170 49.038 104 53 0 8 111 11 114 3.76e-31 114
MS.gene44933.t1 MTR_3g077240 48.077 104 54 0 8 111 10 113 6.70e-30 111
MS.gene44933.t1 MTR_7g033800 46.154 104 56 0 8 111 11 114 1.26e-29 110
MS.gene44933.t1 MTR_5g083010 49.020 102 52 0 9 110 12 113 1.39e-29 110
MS.gene44933.t1 MTR_2g093310 43.609 133 70 2 5 135 30 159 1.97e-29 110
MS.gene44933.t1 MTR_3g031660 42.574 101 58 0 8 108 7 107 2.00e-28 107
MS.gene44933.t1 MTR_8g040900 47.826 115 60 0 8 122 7 121 5.63e-28 107
MS.gene44933.t1 MTR_5g083230 44.643 112 60 1 8 117 6 117 7.25e-28 105
MS.gene44933.t1 MTR_3g071590 44.554 101 56 0 8 108 8 108 1.44e-27 104
MS.gene44933.t1 MTR_2g068760 45.631 103 56 0 6 108 11 113 1.76e-27 103
MS.gene44933.t1 MTR_4g083680 40.146 137 75 2 8 144 15 144 4.37e-27 103
MS.gene44933.t1 MTR_6g005080 42.308 104 60 0 8 111 10 113 1.38e-26 101
MS.gene44933.t1 MTR_6g005070 44.444 108 59 1 8 115 9 115 3.76e-26 100
MS.gene44933.t1 MTR_4g060950 39.416 137 80 3 5 140 21 155 4.26e-26 101
MS.gene44933.t1 MTR_3g071420 47.423 97 51 0 9 105 15 111 3.17e-25 99.0
MS.gene44933.t1 MTR_1g095850 47.000 100 53 0 9 108 73 172 5.45e-25 99.4
MS.gene44933.t1 MTR_3g094690 43.396 106 60 0 6 111 45 150 6.40e-25 99.4
MS.gene44933.t1 MTR_5g083960 43.269 104 59 0 8 111 39 142 9.21e-25 98.2
MS.gene44933.t1 MTR_6g027700 44.660 103 56 1 4 105 3 105 1.26e-24 98.2
MS.gene44933.t1 MTR_3g094690 44.340 106 58 1 6 111 45 149 2.84e-24 97.8
MS.gene44933.t1 MTR_6g027710 41.667 108 62 1 2 108 34 141 3.64e-24 97.4
MS.gene44933.t1 MTR_8g036085 45.714 105 56 1 8 111 23 127 1.40e-23 95.9
MS.gene44933.t1 MTR_5g075020 40.870 115 68 0 6 120 41 155 6.18e-23 94.0
MS.gene44933.t1 MTR_5g075020 40.870 115 68 0 6 120 45 159 8.69e-23 94.0
MS.gene44933.t1 MTR_4g099230 44.118 102 56 1 9 109 3 104 1.62e-22 90.9
MS.gene44933.t1 MTR_7g028905 36.190 105 67 0 5 109 2 106 4.11e-22 88.6
MS.gene44933.t1 MTR_8g017090 37.143 105 66 0 7 111 11 115 1.25e-21 92.0
MS.gene44933.t1 MTR_7g096530 41.748 103 59 1 8 109 14 116 1.59e-21 90.1
MS.gene44933.t1 MTR_5g093010 36.634 101 64 0 9 109 6 106 2.50e-21 87.4
MS.gene44933.t1 MTR_7g074990 44.118 102 56 1 8 108 20 121 4.19e-21 89.4
MS.gene44933.t1 MTR_1g070205 43.269 104 58 1 8 110 12 115 3.01e-20 87.0
MS.gene44933.t1 MTR_6g011250 40.385 104 61 1 7 109 8 111 4.60e-20 85.1
MS.gene44933.t1 MTR_8g036105 42.718 103 58 1 8 109 18 120 9.84e-20 85.1
MS.gene44933.t1 MTR_6g011200 39.450 109 62 2 5 109 3 111 2.19e-19 85.1
MS.gene44933.t1 MTR_7g096610 40.385 104 61 1 8 110 8 111 3.18e-19 84.0
MS.gene44933.t1 MTR_4g107450 38.235 102 63 0 7 108 9 110 5.32e-19 84.7
MS.gene44933.t1 MTR_1g070220 40.594 101 59 1 8 107 15 115 5.58e-19 82.8
MS.gene44933.t1 MTR_5g080470 37.864 103 63 1 9 110 8 110 1.22e-17 79.0
MS.gene44933.t1 MTR_5g085390 39.450 109 62 2 5 109 3 111 1.56e-17 79.7
MS.gene44933.t1 MTR_2g100020 33.981 103 68 0 7 109 18 120 1.73e-17 80.1
MS.gene44933.t1 MTR_6g011230 34.343 99 65 0 7 105 10 108 3.87e-17 77.8
MS.gene44933.t1 MTR_4g088035 37.209 86 54 0 9 94 7 92 1.07e-16 77.8
MS.gene44933.t1 MTR_7g075230 40.952 105 59 2 8 109 12 116 1.17e-16 76.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene44933.t1 AT5G66870 43.590 156 75 2 8 163 7 149 7.89e-34 125
MS.gene44933.t1 AT1G65620 56.731 104 45 0 8 111 9 112 2.06e-31 115
MS.gene44933.t1 AT1G65620 56.731 104 45 0 8 111 9 112 2.06e-31 115
MS.gene44933.t1 AT1G65620 56.731 104 45 0 8 111 9 112 2.06e-31 115
MS.gene44933.t1 AT1G65620 56.731 104 45 0 8 111 9 112 2.06e-31 115
MS.gene44933.t1 AT1G65620 56.731 104 45 0 8 111 9 112 2.06e-31 115
MS.gene44933.t1 AT5G63090 50.000 104 52 0 8 111 11 114 1.14e-30 113
MS.gene44933.t1 AT5G63090 50.000 104 52 0 8 111 11 114 1.14e-30 113
MS.gene44933.t1 AT5G63090 50.000 104 52 0 8 111 11 114 1.14e-30 113
MS.gene44933.t1 AT5G63090 50.000 104 52 0 8 111 11 114 1.14e-30 113
MS.gene44933.t1 AT2G23660 50.909 110 54 0 8 117 5 114 2.38e-30 115
MS.gene44933.t1 AT2G23660 50.909 110 54 0 8 117 5 114 2.38e-30 115
MS.gene44933.t1 AT2G23660 50.909 110 54 0 8 117 5 114 2.38e-30 115
MS.gene44933.t1 AT3G27650 46.154 104 56 0 8 111 39 142 1.30e-27 104
MS.gene44933.t1 AT1G07900 45.283 106 58 0 3 108 28 133 1.41e-27 105
MS.gene44933.t1 AT2G28500 46.154 104 56 0 5 108 52 155 2.51e-27 105
MS.gene44933.t1 AT2G30130 45.545 101 55 0 8 108 8 108 2.58e-27 104
MS.gene44933.t1 AT1G16530 46.154 104 55 1 6 108 12 115 3.10e-26 100
MS.gene44933.t1 AT3G11090 45.000 100 55 0 9 108 12 111 3.84e-26 100
MS.gene44933.t1 AT1G31320 48.864 88 45 0 8 95 13 100 7.18e-26 100
MS.gene44933.t1 AT3G50510 43.243 111 62 1 1 111 6 115 1.29e-25 100
MS.gene44933.t1 AT3G50510 43.243 111 62 1 1 111 6 115 1.29e-25 100
MS.gene44933.t1 AT5G35900 44.231 104 58 0 9 112 6 109 5.73e-25 99.0
MS.gene44933.t1 AT3G26660 40.594 101 60 0 9 109 6 106 6.05e-24 93.6
MS.gene44933.t1 AT3G26620 40.594 101 60 0 9 109 6 106 7.80e-24 93.6
MS.gene44933.t1 AT2G30340 42.453 106 61 0 6 111 51 156 9.07e-24 97.4
MS.gene44933.t1 AT2G40470 41.379 116 68 0 6 121 18 133 9.57e-24 95.5
MS.gene44933.t1 AT2G30340 42.453 106 61 0 6 111 50 155 1.14e-23 97.1
MS.gene44933.t1 AT2G40470 41.379 116 68 0 6 121 43 158 3.81e-23 94.7
MS.gene44933.t1 AT1G72980 39.000 100 61 0 9 108 14 113 7.81e-22 90.9
MS.gene44933.t1 AT4G00210 44.762 105 53 2 8 109 11 113 2.09e-21 89.7
MS.gene44933.t1 AT3G03760 43.137 102 57 1 8 108 51 152 3.58e-21 90.5
MS.gene44933.t1 AT3G47870 38.835 103 63 0 9 111 37 139 3.94e-21 91.3
MS.gene44933.t1 AT2G42430 40.777 103 60 1 8 109 15 117 5.20e-21 89.4
MS.gene44933.t1 AT3G13850 37.864 103 64 0 9 111 37 139 6.95e-21 89.4
MS.gene44933.t1 AT3G58190 42.308 104 59 1 8 110 11 114 3.24e-20 86.7
MS.gene44933.t1 AT2G45420 43.000 100 56 1 11 109 40 139 1.75e-19 85.5
MS.gene44933.t1 AT4G00220 44.000 100 55 1 11 109 20 119 3.82e-19 84.0
MS.gene44933.t1 AT2G42440 38.462 104 63 1 8 110 7 110 3.97e-19 84.3
MS.gene44933.t1 AT2G45410 42.000 100 57 1 11 109 19 118 1.13e-17 79.0
MS.gene44933.t1 AT4G22700 36.508 126 76 4 9 131 6 130 5.85e-17 77.0
MS.gene44933.t1 AT2G31310 36.538 104 65 1 8 110 7 110 3.10e-16 75.1
MS.gene44933.t1 AT5G06080 34.286 105 68 1 8 111 7 111 9.36e-15 70.9
MS.gene44933.t1 AT1G06280 36.709 79 50 0 7 85 23 101 3.33e-13 67.0

Find 94 sgRNAs with CRISPR-Local

Find 95 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGTTCCTGTTCATGATTC+TGG 0.146797 8.1:+28111601 MS.gene44933:CDS
CTTCTGTGCTTCCTTCTTCT+AGG 0.193943 8.1:+28111671 MS.gene44933:CDS
CTCGCGTTTCCTGATTGTTT+TGG 0.249878 8.1:+28111334 MS.gene44933:CDS
ATGTTCCTGTTCATGATTCT+GGG 0.335478 8.1:+28111602 MS.gene44933:CDS
GTTCATGATTCTGGGTTGGC+TGG 0.362539 8.1:+28111610 MS.gene44933:CDS
GACCTGAGGATTGAGGTATT+TGG 0.365999 8.1:-28111299 None:intergenic
CTACCTTGAAGGTCATTTGC+TGG 0.366573 8.1:-28111229 None:intergenic
GCCAAGGTACACTCGGTGTT+TGG 0.371149 8.1:+28111085 MS.gene44933:CDS
AAACGCTCCAAGTTGTCCTT+TGG 0.382954 8.1:-28111061 None:intergenic
AGCAACCAGGGTCGATTGCC+GGG 0.393568 8.1:+28111727 MS.gene44933:CDS
AAGCAACCAGGGTCGATTGC+CGG 0.397461 8.1:+28111726 MS.gene44933:CDS
GGCTTAAAGCCAAAACAATC+AGG 0.409263 8.1:-28111343 None:intergenic
TTCTGTGCTTCCTTCTTCTA+GGG 0.409577 8.1:+28111672 MS.gene44933:CDS
GAGGAACATGAGGAAGCATC+TGG 0.409895 8.1:-28111636 None:intergenic
CTAAAACAAAAGCTTCTTAG+TGG 0.418812 8.1:+28111469 MS.gene44933:CDS
AAGTTGTCCTTTGGAAAGTA+AGG 0.439193 8.1:-28111052 None:intergenic
AGCACAGAAGGAGCATCAAC+AGG 0.442967 8.1:-28111658 None:intergenic
AGCTAGGGTGGCACTTCCTA+TGG 0.445033 8.1:-28111018 None:intergenic
GGTGGTTCAGTCGGTGGCAG+TGG 0.448506 8.1:+28111550 MS.gene44933:CDS
TCCTGTTCATGATTCTGGGT+TGG 0.449021 8.1:+28111606 MS.gene44933:CDS
GACAGTCGGTGGAGGACCAT+TGG 0.450872 8.1:+28111387 MS.gene44933:CDS
CTTCATTCAACCTACCTTGA+AGG 0.452245 8.1:-28111240 None:intergenic
GCCAACCCATCATCACCATC+GGG 0.452840 8.1:-28111493 None:intergenic
CAGGAACATCAACACCCATC+TGG 0.459253 8.1:-28111588 None:intergenic
AGTGGCCCCGATGGTGATGA+TGG 0.469173 8.1:+28111487 MS.gene44933:CDS
CAGGAACATTAACATCCATC+TGG 0.471455 8.1:-28111522 None:intergenic
GACCCTATCCATGGTTGTGC+GGG 0.480158 8.1:+28111205 MS.gene44933:CDS
ACAGTCGGTGGAGGACCATT+GGG 0.481003 8.1:+28111388 MS.gene44933:CDS
GGCTCCCCGGCAATCGACCC+TGG 0.481884 8.1:-28111732 None:intergenic
GCCAACCCAGAATCATGAAC+AGG 0.484253 8.1:-28111607 None:intergenic
TTACTTTCCAAAGGACAACT+TGG 0.485558 8.1:+28111054 MS.gene44933:CDS
ATAGTCGGTGGAGAAGCATT+TGG 0.487182 8.1:-28111364 None:intergenic
TGGTGTATGAAGCTGATGCC+TGG 0.491815 8.1:+28111176 MS.gene44933:CDS
CCGACTGAACCACCACCAAC+AGG 0.496150 8.1:-28111541 None:intergenic
AGTCGGTGGCAGTGGTGGCT+CGG 0.496637 8.1:+28111558 MS.gene44933:CDS
TAAGGAGCTAAGACACAGCT+AGG 0.498376 8.1:-28111034 None:intergenic
TGCCAACCCATCATCACCAT+CGG 0.501173 8.1:-28111494 None:intergenic
TGAACAAGCTGTTGAATCCT+TGG 0.502541 8.1:+28111156 MS.gene44933:CDS
GTTAATGTTCCTGTTGGTGG+TGG 0.504572 8.1:+28111532 MS.gene44933:CDS
GATGTTAATGTTCCTGTTGG+TGG 0.510237 8.1:+28111529 MS.gene44933:CDS
TAGGTTGAATGAAGCTCAAA+CGG 0.515884 8.1:+28111249 MS.gene44933:CDS
AAAGTATCAGCCCTAGAAGA+AGG 0.518742 8.1:-28111682 None:intergenic
CAAGAGTATGAAGAATGAAC+TGG 0.518901 8.1:+28111276 MS.gene44933:CDS
GATGGTGATGATGGGTTGGC+AGG 0.524172 8.1:+28111496 MS.gene44933:CDS
CTAGAAGAAGGAAGCACAGA+AGG 0.524800 8.1:-28111670 None:intergenic
GACCCGCACAACCATGGATA+GGG 0.528727 8.1:-28111207 None:intergenic
TTGCTGGACCCGCACAACCA+TGG 0.531067 8.1:-28111213 None:intergenic
GGTTCAGTCGGTGGCAGTGG+TGG 0.531303 8.1:+28111553 MS.gene44933:CDS
CTTAGCTCCTTACTTTCCAA+AGG 0.539710 8.1:+28111045 MS.gene44933:CDS
CCCCGATGGTGATGATGGGT+TGG 0.540092 8.1:+28111492 MS.gene44933:CDS
GATCAAACGTTGTGGCTCCC+CGG 0.541997 8.1:-28111745 None:intergenic
ATGAAGCTGATGCCTGGTTG+AGG 0.542839 8.1:+28111182 MS.gene44933:CDS
TCCAAACACCGAGTGTACCT+TGG 0.546759 8.1:-28111086 None:intergenic
GGTCCAGCAAATGACCTTCA+AGG 0.548176 8.1:+28111226 MS.gene44933:CDS
GGCCAAATACCTCAATCCTC+AGG 0.557788 8.1:+28111297 MS.gene44933:CDS
TGGCTCGGCAAGATTCCAGA+TGG 0.560308 8.1:+28111573 MS.gene44933:CDS
GGACCCGCACAACCATGGAT+AGG 0.560372 8.1:-28111208 None:intergenic
CCTGTTGGTGGTGGTTCAGT+CGG 0.562105 8.1:+28111541 MS.gene44933:CDS
AGATGCTTGCAAGCTGCACA+TGG 0.564745 8.1:-28110995 None:intergenic
GGACCCTATCCATGGTTGTG+CGG 0.567733 8.1:+28111204 MS.gene44933:CDS
TAGCACTAGCACAAGCAACC+AGG 0.569645 8.1:+28111714 MS.gene44933:CDS
TGAAGCTGATGCCTGGTTGA+GGG 0.570610 8.1:+28111183 MS.gene44933:CDS
ATGGATAGGGTCCCTCAACC+AGG 0.574346 8.1:-28111194 None:intergenic
ATTCAACGACCTGAGGATTG+AGG 0.583762 8.1:-28111306 None:intergenic
CAGCTTGCAAGCATCTCCAT+AGG 0.587034 8.1:+28111002 MS.gene44933:CDS
AAGCTTCTTAGTGGCCCCGA+TGG 0.587409 8.1:+28111478 MS.gene44933:CDS
ATGGATGTTAATGTTCCTGT+TGG 0.590588 8.1:+28111526 MS.gene44933:CDS
TGGTTGAGGGACCCTATCCA+TGG 0.595646 8.1:+28111196 MS.gene44933:CDS
GGCTCGGCAAGATTCCAGAT+GGG 0.596754 8.1:+28111574 MS.gene44933:CDS
TGAGTCGTTAACTCAGCAGC+TGG 0.600497 8.1:-28111424 None:intergenic
GCAACCAGGGTCGATTGCCG+GGG 0.604916 8.1:+28111728 MS.gene44933:CDS
CCTCCACCGACTGTCATAGT+CGG 0.607543 8.1:-28111379 None:intergenic
CAACTTGGAGCGTTTCGCCA+AGG 0.611250 8.1:+28111069 MS.gene44933:CDS
GCATCAACAGGAGGAACATG+AGG 0.622008 8.1:-28111646 None:intergenic
AGGAACATGAGGAAGCATCT+GGG 0.622177 8.1:-28111635 None:intergenic
GTTGGTGGTGGTTCAGTCGG+TGG 0.623040 8.1:+28111544 MS.gene44933:CDS
GGCAGCTGATTAAAACCCAA+TGG 0.624529 8.1:-28111403 None:intergenic
CGCCGCAAGATCAAACGTTG+TGG 0.625416 8.1:-28111753 None:intergenic
GAGCTAAGACACAGCTAGGG+TGG 0.629501 8.1:-28111030 None:intergenic
CAGCAAATGACCTTCAAGGT+AGG 0.629800 8.1:+28111230 MS.gene44933:CDS
CCACCGACTGTCATAGTCGG+TGG 0.630005 8.1:-28111376 None:intergenic
GCGTTTCGCCAAGGTACACT+CGG 0.634058 8.1:+28111078 MS.gene44933:CDS
AAGGAGCTAAGACACAGCTA+GGG 0.637825 8.1:-28111033 None:intergenic
CCGACTATGACAGTCGGTGG+AGG 0.638161 8.1:+28111379 MS.gene44933:CDS
GTGGCCCCGATGGTGATGAT+GGG 0.639305 8.1:+28111488 MS.gene44933:CDS
CCACCGACTATGACAGTCGG+TGG 0.655151 8.1:+28111376 MS.gene44933:CDS
GATGCTTGCAAGCTGCACAT+GGG 0.660822 8.1:-28110994 None:intergenic
AGCACTAGCACAAGCAACCA+GGG 0.667332 8.1:+28111715 MS.gene44933:CDS
TCTCCACCGACTATGACAGT+CGG 0.670674 8.1:+28111373 MS.gene44933:CDS
AGAACAAATTCAACGACCTG+AGG 0.671646 8.1:-28111313 None:intergenic
TGGGTTGGCAGGATTCCAGA+TGG 0.675884 8.1:+28111507 MS.gene44933:CDS
ACAGAAGGAGCATCAACAGG+AGG 0.677829 8.1:-28111655 None:intergenic
GGCATCAGCTTCATACACCA+AGG 0.679242 8.1:-28111173 None:intergenic
CCAACCCATCATCACCATCG+GGG 0.738435 8.1:-28111492 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GACTAATTTGTTGAAAAAAC+TGG + chr8.1:28111120-28111139 MS.gene44933:CDS 25.0%
CTAAAACAAAAGCTTCTTAG+TGG + chr8.1:28111469-28111488 MS.gene44933:CDS 30.0%
!!! GCTTTTGTTTTAGAACTTCT+AGG - chr8.1:28111462-28111481 None:intergenic 30.0%
ATGGATGTTAATGTTCCTGT+TGG + chr8.1:28111526-28111545 MS.gene44933:CDS 35.0%
ATGTTCCTGTTCATGATTCT+GGG + chr8.1:28111602-28111621 MS.gene44933:CDS 35.0%
TTACTTTCCAAAGGACAACT+TGG + chr8.1:28111054-28111073 MS.gene44933:CDS 35.0%
! AAGTTGTCCTTTGGAAAGTA+AGG - chr8.1:28111055-28111074 None:intergenic 35.0%
! CAAGAGTATGAAGAATGAAC+TGG + chr8.1:28111276-28111295 MS.gene44933:CDS 35.0%
! TAGGTTGAATGAAGCTCAAA+CGG + chr8.1:28111249-28111268 MS.gene44933:CDS 35.0%
AGAACAAATTCAACGACCTG+AGG - chr8.1:28111316-28111335 None:intergenic 40.0%
CAGGAACATTAACATCCATC+TGG - chr8.1:28111525-28111544 None:intergenic 40.0%
CTTAGCTCCTTACTTTCCAA+AGG + chr8.1:28111045-28111064 MS.gene44933:CDS 40.0%
CTTCATTCAACCTACCTTGA+AGG - chr8.1:28111243-28111262 None:intergenic 40.0%
GATGTTAATGTTCCTGTTGG+TGG + chr8.1:28111529-28111548 MS.gene44933:CDS 40.0%
GATGTTCCTGTTCATGATTC+TGG + chr8.1:28111601-28111620 MS.gene44933:CDS 40.0%
GGCTTAAAGCCAAAACAATC+AGG - chr8.1:28111346-28111365 None:intergenic 40.0%
TGAACAAGCTGTTGAATCCT+TGG + chr8.1:28111156-28111175 MS.gene44933:CDS 40.0%
TTCTGTGCTTCCTTCTTCTA+GGG + chr8.1:28111672-28111691 MS.gene44933:CDS 40.0%
! AAAGTATCAGCCCTAGAAGA+AGG - chr8.1:28111685-28111704 None:intergenic 40.0%
! AGGGCTGATACTTTTGACAA+TGG + chr8.1:28111691-28111710 MS.gene44933:CDS 40.0%
AAACGCTCCAAGTTGTCCTT+TGG - chr8.1:28111064-28111083 None:intergenic 45.0%
AAGGAGCTAAGACACAGCTA+GGG - chr8.1:28111036-28111055 None:intergenic 45.0%
ATTCAACGACCTGAGGATTG+AGG - chr8.1:28111309-28111328 None:intergenic 45.0%
CAGCAAATGACCTTCAAGGT+AGG + chr8.1:28111230-28111249 MS.gene44933:CDS 45.0%
CTACCTTGAAGGTCATTTGC+TGG - chr8.1:28111232-28111251 None:intergenic 45.0%
CTTCTGTGCTTCCTTCTTCT+AGG + chr8.1:28111671-28111690 MS.gene44933:CDS 45.0%
GGCAGCTGATTAAAACCCAA+TGG - chr8.1:28111406-28111425 None:intergenic 45.0%
TAAGGAGCTAAGACACAGCT+AGG - chr8.1:28111037-28111056 None:intergenic 45.0%
TCCTGTTCATGATTCTGGGT+TGG + chr8.1:28111606-28111625 MS.gene44933:CDS 45.0%
! CTAGAAGAAGGAAGCACAGA+AGG - chr8.1:28111673-28111692 None:intergenic 45.0%
! CTCGCGTTTCCTGATTGTTT+TGG + chr8.1:28111334-28111353 MS.gene44933:CDS 45.0%
! GACCTGAGGATTGAGGTATT+TGG - chr8.1:28111302-28111321 None:intergenic 45.0%
! GTTAATGTTCCTGTTGGTGG+TGG + chr8.1:28111532-28111551 MS.gene44933:CDS 45.0%
!! AGGAACATGAGGAAGCATCT+GGG - chr8.1:28111638-28111657 None:intergenic 45.0%
!! ATAGTCGGTGGAGAAGCATT+TGG - chr8.1:28111367-28111386 None:intergenic 45.0%
AGATGCTTGCAAGCTGCACA+TGG - chr8.1:28110998-28111017 None:intergenic 50.0%
AGCACTAGCACAAGCAACCA+GGG + chr8.1:28111715-28111734 MS.gene44933:CDS 50.0%
ATGAAGCTGATGCCTGGTTG+AGG + chr8.1:28111182-28111201 MS.gene44933:CDS 50.0%
CAGCTTGCAAGCATCTCCAT+AGG + chr8.1:28111002-28111021 MS.gene44933:CDS 50.0%
CAGGAACATCAACACCCATC+TGG - chr8.1:28111591-28111610 None:intergenic 50.0%
GATGCTTGCAAGCTGCACAT+GGG - chr8.1:28110997-28111016 None:intergenic 50.0%
GCATCAACAGGAGGAACATG+AGG - chr8.1:28111649-28111668 None:intergenic 50.0%
GCCAACCCAGAATCATGAAC+AGG - chr8.1:28111610-28111629 None:intergenic 50.0%
GGCATCAGCTTCATACACCA+AGG - chr8.1:28111176-28111195 None:intergenic 50.0%
GGCCAAATACCTCAATCCTC+AGG + chr8.1:28111297-28111316 MS.gene44933:CDS 50.0%
GGTCCAGCAAATGACCTTCA+AGG + chr8.1:28111226-28111245 MS.gene44933:CDS 50.0%
TAGCACTAGCACAAGCAACC+AGG + chr8.1:28111714-28111733 MS.gene44933:CDS 50.0%
TCCAAACACCGAGTGTACCT+TGG - chr8.1:28111089-28111108 None:intergenic 50.0%
TGAAGCTGATGCCTGGTTGA+GGG + chr8.1:28111183-28111202 MS.gene44933:CDS 50.0%
TGAGTCGTTAACTCAGCAGC+TGG - chr8.1:28111427-28111446 None:intergenic 50.0%
TGCCAACCCATCATCACCAT+CGG - chr8.1:28111497-28111516 None:intergenic 50.0%
TGGTGTATGAAGCTGATGCC+TGG + chr8.1:28111176-28111195 MS.gene44933:CDS 50.0%
! TCTCCACCGACTATGACAGT+CGG + chr8.1:28111373-28111392 MS.gene44933:CDS 50.0%
!! ACAGAAGGAGCATCAACAGG+AGG - chr8.1:28111658-28111677 None:intergenic 50.0%
!! AGCACAGAAGGAGCATCAAC+AGG - chr8.1:28111661-28111680 None:intergenic 50.0%
!! GAGGAACATGAGGAAGCATC+TGG - chr8.1:28111639-28111658 None:intergenic 50.0%
!! GTTCATGATTCTGGGTTGGC+TGG + chr8.1:28111610-28111629 MS.gene44933:CDS 50.0%
AAGCAACCAGGGTCGATTGC+CGG + chr8.1:28111726-28111745 MS.gene44933:CDS 55.0%
AAGCTTCTTAGTGGCCCCGA+TGG + chr8.1:28111478-28111497 MS.gene44933:CDS 55.0%
ACAGTCGGTGGAGGACCATT+GGG + chr8.1:28111388-28111407 MS.gene44933:CDS 55.0%
AGCTAGGGTGGCACTTCCTA+TGG - chr8.1:28111021-28111040 None:intergenic 55.0%
ATGGATAGGGTCCCTCAACC+AGG - chr8.1:28111197-28111216 None:intergenic 55.0%
CCAACCCATCATCACCATCG+GGG - chr8.1:28111495-28111514 None:intergenic 55.0%
GACCCGCACAACCATGGATA+GGG - chr8.1:28111210-28111229 None:intergenic 55.0%
GACCCTATCCATGGTTGTGC+GGG + chr8.1:28111205-28111224 MS.gene44933:CDS 55.0%
GAGCTAAGACACAGCTAGGG+TGG - chr8.1:28111033-28111052 None:intergenic 55.0%
GCCAACCCATCATCACCATC+GGG - chr8.1:28111496-28111515 None:intergenic 55.0%
GCGTTTCGCCAAGGTACACT+CGG + chr8.1:28111078-28111097 MS.gene44933:CDS 55.0%
GGACCCTATCCATGGTTGTG+CGG + chr8.1:28111204-28111223 MS.gene44933:CDS 55.0%
GGCTCGGCAAGATTCCAGAT+GGG + chr8.1:28111574-28111593 MS.gene44933:CDS 55.0%
TGGTTGAGGGACCCTATCCA+TGG + chr8.1:28111196-28111215 MS.gene44933:CDS 55.0%
! CAACTTGGAGCGTTTCGCCA+AGG + chr8.1:28111069-28111088 MS.gene44933:CDS 55.0%
! CCTCCACCGACTGTCATAGT+CGG - chr8.1:28111382-28111401 None:intergenic 55.0%
! TGGCTCGGCAAGATTCCAGA+TGG + chr8.1:28111573-28111592 MS.gene44933:CDS 55.0%
!! CCTGTTGGTGGTGGTTCAGT+CGG + chr8.1:28111541-28111560 MS.gene44933:CDS 55.0%
!! GATGGTGATGATGGGTTGGC+AGG + chr8.1:28111496-28111515 MS.gene44933:CDS 55.0%
!! GCCAAGGTACACTCGGTGTT+TGG + chr8.1:28111085-28111104 MS.gene44933:CDS 55.0%
!! TGGGTTGGCAGGATTCCAGA+TGG + chr8.1:28111507-28111526 MS.gene44933:CDS 55.0%
AGCAACCAGGGTCGATTGCC+GGG + chr8.1:28111727-28111746 MS.gene44933:CDS 60.0%
CCGACTATGACAGTCGGTGG+AGG + chr8.1:28111379-28111398 MS.gene44933:CDS 60.0%
CCGACTGAACCACCACCAAC+AGG - chr8.1:28111544-28111563 None:intergenic 60.0%
GACAGTCGGTGGAGGACCAT+TGG + chr8.1:28111387-28111406 MS.gene44933:CDS 60.0%
GGACCCGCACAACCATGGAT+AGG - chr8.1:28111211-28111230 None:intergenic 60.0%
TTGCTGGACCCGCACAACCA+TGG - chr8.1:28111216-28111235 None:intergenic 60.0%
! AGTGGCCCCGATGGTGATGA+TGG + chr8.1:28111487-28111506 MS.gene44933:CDS 60.0%
! CCACCGACTATGACAGTCGG+TGG + chr8.1:28111376-28111395 MS.gene44933:CDS 60.0%
! CCACCGACTGTCATAGTCGG+TGG - chr8.1:28111379-28111398 None:intergenic 60.0%
! GTGGCCCCGATGGTGATGAT+GGG + chr8.1:28111488-28111507 MS.gene44933:CDS 60.0%
!! CCCCGATGGTGATGATGGGT+TGG + chr8.1:28111492-28111511 MS.gene44933:CDS 60.0%
!! GTTGGTGGTGGTTCAGTCGG+TGG + chr8.1:28111544-28111563 MS.gene44933:CDS 60.0%
AGTCGGTGGCAGTGGTGGCT+CGG + chr8.1:28111558-28111577 MS.gene44933:CDS 65.0%
GCAACCAGGGTCGATTGCCG+GGG + chr8.1:28111728-28111747 MS.gene44933:CDS 65.0%
GGTGGTTCAGTCGGTGGCAG+TGG + chr8.1:28111550-28111569 MS.gene44933:CDS 65.0%
GGTTCAGTCGGTGGCAGTGG+TGG + chr8.1:28111553-28111572 MS.gene44933:CDS 65.0%
GGCTCCCCGGCAATCGACCC+TGG - chr8.1:28111735-28111754 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 28110974 28111765 28110974 ID=MS.gene44933
chr8.1 mRNA 28110974 28111765 28110974 ID=MS.gene44933.t1;Parent=MS.gene44933
chr8.1 exon 28110974 28111765 28110974 ID=MS.gene44933.t1.exon1;Parent=MS.gene44933.t1
chr8.1 CDS 28110974 28111765 28110974 ID=cds.MS.gene44933.t1;Parent=MS.gene44933.t1
Gene Sequence

>MS.gene44933

ATGGATAGAGAGATTATTCGCCCATGTGCAGCTTGCAAGCATCTCCATAGGAAGTGCCACCCTAGCTGTGTCTTAGCTCCTTACTTTCCAAAGGACAACTTGGAGCGTTTCGCCAAGGTACACTCGGTGTTTGGAAAGAGAAATGTGACTAATTTGTTGAAAAAACTGGATGTTTCACATCATGAACAAGCTGTTGAATCCTTGGTGTATGAAGCTGATGCCTGGTTGAGGGACCCTATCCATGGTTGTGCGGGTCCAGCAAATGACCTTCAAGGTAGGTTGAATGAAGCTCAAACGGAGCTCAAGAGTATGAAGAATGAACTGGCCAAATACCTCAATCCTCAGGTCGTTGAATTTGTTCTCGCGTTTCCTGATTGTTTTGGCTTTAAGCCAAATGCTTCTCCACCGACTATGACAGTCGGTGGAGGACCATTGGGTTTTAATCAGCTGCCAGCTGCTGAGTTAACGACTCAGCAGCTTCACAACCTAGAAGTTCTAAAACAAAAGCTTCTTAGTGGCCCCGATGGTGATGATGGGTTGGCAGGATTCCAGATGGATGTTAATGTTCCTGTTGGTGGTGGTTCAGTCGGTGGCAGTGGTGGCTCGGCAAGATTCCAGATGGGTGTTGATGTTCCTGTTCATGATTCTGGGTTGGCTGGATCCCAGATGCTTCCTCATGTTCCTCCTGTTGATGCTCCTTCTGTGCTTCCTTCTTCTAGGGCTGATACTTTTGACAATGGTAGCACTAGCACAAGCAACCAGGGTCGATTGCCGGGGAGCCACAACGTTTGA
Protein sequence

>MS.gene44933.t1

MDREIIRPCAACKHLHRKCHPSCVLAPYFPKDNLERFAKVHSVFGKRNVTNLLKKLDVSHHEQAVESLVYEADAWLRDPIHGCAGPANDLQGRLNEAQTELKSMKNELAKYLNPQVVEFVLAFPDCFGFKPNASPPTMTVGGGPLGFNQLPAAELTTQQLHNLEVLKQKLLSGPDGDDGLAGFQMDVNVPVGGGSVGGSGGSARFQMGVDVPVHDSGLAGSQMLPHVPPVDAPSVLPSSRADTFDNGSTSTSNQGRLPGSHNV