AlfalfaGEDB | MS.gene44959

M. sativa cultivar XinJiangDaYe / MS.gene44959

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02701.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44959.t1	XP_013446470.1	80.6	345	56	3	1	344	1	335	1.20E-118	436.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44959.t1	Q84TE9	61.4	88	30	1	73	160	55	138	1.7e-25	118.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44959.t1	A0A072TSV2	80.6	345	56	3	1	344	1	335	8.4e-119	436.8

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene44959.t1	TF	C2C2-Dof

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44959.t1	MTR_8g479350	90.145	345	23	5	1	344	1	335	0.0	543
MS.gene44959.t1	MTR_4g063780	68.354	79	16	1	70	139	72	150	4.50e-32	124
MS.gene44959.t1	MTR_2g096740	76.190	63	15	0	73	135	62	124	4.60e-32	123
MS.gene44959.t1	MTR_2g096740	76.190	63	15	0	73	135	77	139	4.64e-32	124
MS.gene44959.t1	MTR_7g024670	76.562	64	15	0	74	137	78	141	1.12e-30	121
MS.gene44959.t1	MTR_8g068210	55.556	90	40	0	60	149	19	108	3.52e-30	119
MS.gene44959.t1	MTR_5g031440	87.037	54	7	0	70	123	40	93	7.19e-30	119
MS.gene44959.t1	MTR_4g088580	75.806	62	15	0	74	135	56	117	1.18e-29	119
MS.gene44959.t1	MTR_3g090430	59.036	83	30	1	48	126	22	104	2.36e-29	117
MS.gene44959.t1	MTR_8g079060	57.143	84	36	0	65	148	21	104	3.77e-29	114

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44959.t1	AT5G60200	58.416	101	35	3	63	160	42	138	7.21e-32	122
MS.gene44959.t1	AT5G65590	54.455	101	46	0	37	137	5	105	1.96e-31	122
MS.gene44959.t1	AT1G07640	90.566	53	5	0	73	125	21	73	6.43e-31	120
MS.gene44959.t1	AT1G51700	63.750	80	23	1	51	124	5	84	7.91e-31	117
MS.gene44959.t1	AT1G07640	90.566	53	5	0	73	125	77	129	9.67e-31	121
MS.gene44959.t1	AT1G07640	90.566	53	5	0	73	125	85	137	1.26e-30	120
MS.gene44959.t1	AT2G28810	86.538	52	7	0	73	124	77	128	4.64e-30	119
MS.gene44959.t1	AT5G60850	70.270	74	17	1	73	141	51	124	5.34e-30	118
MS.gene44959.t1	AT2G28810	86.538	52	7	0	73	124	94	145	7.55e-30	119
MS.gene44959.t1	AT3G21270	88.679	53	6	0	73	125	29	81	8.41e-30	115

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Find 146 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGTGGATTTGTACTT+GGG	0.478306	8.1:-28496724	MS.gene44959:CDS
AAAGGAGAGGGAGTCACCGG+TGG	0.644571	8.1:+28495079	None:intergenic
AAATGGTGGATTTGTACTTG+GGG	0.583095	8.1:-28496723	MS.gene44959:CDS
AACAGTGTTACTAGGGAACG+TGG	0.681785	8.1:-28496576	MS.gene44959:CDS
AACTACTCTTCCATTAATGG+AGG	0.630490	8.1:-28497412	MS.gene44959:CDS
AACTCATCATGTGAGAAACA+TGG	0.610751	8.1:+28496846	None:intergenic
AAGAACTGTACCAGAAACTA+AGG	0.497513	8.1:-28496664	MS.gene44959:CDS
AAGAAGGCAATAACTTCATA+GGG	0.534937	8.1:-28496871	MS.gene44959:CDS
AAGATGATCCAAGAACTCTT+TGG	0.477513	8.1:-28497472	MS.gene44959:CDS
ACACCAGAACAGAGATACAC+CGG	0.681233	8.1:+28495030	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACCTATGCTACTATGTAA+TGG	+	chr8.1:28495999-28496018	None:intergenic	30.0%
AAGAAGGCAATAACTTCATA+GGG	-	chr8.1:28495482-28495501	MS.gene44959:intron	30.0%
AATTTAATGGGACAACATAG+CGG	+	chr8.1:28496990-28497009	None:intergenic	30.0%
ACAGTTTCTTCAGAGTTTAA+TGG	-	chr8.1:28495313-28495332	MS.gene44959:intron	30.0%
ACTCAACAATTACAAAATGG+TGG	-	chr8.1:28495616-28495635	MS.gene44959:intron	30.0%
AGAAACTACTCTTCCATTAA+TGG	-	chr8.1:28494938-28494957	MS.gene44959:CDS	30.0%
ATTTCGTCAAATGGTTATGA+TGG	-	chr8.1:28495541-28495560	MS.gene44959:intron	30.0%
CTAACTAAAGCATATGTTAG+AGG	-	chr8.1:28496415-28496434	MS.gene44959:intron	30.0%
CTTCTTCCTTAACATGATTA+GGG	+	chr8.1:28495468-28495487	None:intergenic	30.0%
TAACCATTTGACGAAATCAA+CGG	+	chr8.1:28495538-28495557	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	28494884	28497491	28494884	ID=MS.gene44959
chr8.1	mRNA	28494884	28497491	28494884	ID=MS.gene44959.t1;Parent=MS.gene44959
chr8.1	exon	28496459	28497491	28496459	ID=MS.gene44959.t1.exon1;Parent=MS.gene44959.t1
chr8.1	CDS	28496459	28497491	28496459	ID=cds.MS.gene44959.t1;Parent=MS.gene44959.t1
chr8.1	exon	28494884	28495140	28494884	ID=MS.gene44959.t1.exon2;Parent=MS.gene44959.t1
chr8.1	CDS	28494884	28495140	28494884	ID=cds.MS.gene44959.t1;Parent=MS.gene44959.t1

Gene Sequence

>MS.gene44959

ATGATCCAAGAACTCTTTGGTAATGGTGCTAGTGCTACCCTCACTTCAAGTGAAAGAAACTACTCTTCCATTAATGGAGGAGTTGGAGGAGTTTTACTTCAACCAACAACACAACCTCCTTCTTCACGCCCATCTTCCACAACCACCACCACCACCACCACTGCACCAACCACCGTCACCACAACCACCACCGCATCATCAGAAAACCAACCACATCTAAGGTGTCCAAGATGTGACTCATCAAACACAAAATTTTGTTACTACAACAACTACAACCTCACTCAGCCTCGCCATTTCTGCAAGACATGCCGTCGTTACTGGACAAAAGGAGGTGCTTTGAGGAACGTTCCCATAGGAGGTGGCTGTCGGAAAAACAAGAGTATCAACGCCTCAAATAGCGCGGCAAAAACAACTACAAACAAGATGAAAACAGTTTCTTCAGAGTTTAATGGAAGGTCAACAAGTGGTCAAGGGTTTGATCTCGAACACGTTGTTCCACCACAAAGTCAAATCCTCTGGGGTTCTCCTCAAAATTCTCATATACTTTCTTTGCTAAGATCTAGTCAAAACCAAAACCCTAACCCTAATCATGTTAAGGAAGAAGGCAATAACTTCATAGGGTCCCATGTTTCTCACATGATGAGTTCTCAGCCGTTGATTTCGTCAAATGGTTATGATGGTGTTGGGCATGTTTTATGCAACCCATTTTGGAGAAACAATCATGATAATCAAACTCAACAATTACAAAATGGTGGATTTGTACTTGGGGATCAACAACATCACCATCATCAAAACAGTGGAATCCAAGAACTGTACCAGAAACTAAGGTCATCAACAACATCATCATCATCAGGTAATAATTATTGCAGTGAGATTTCATCTTCACCAACACCAACAGTGTTACTAGGGAACGTGGCTTCAAACTCTTCCTCTATATCCAACATTTTGGAGACAACTTCAGTTACTGGTGGTGAATTAGGGTACTGGAATCCAATTCCAACACTAACTTGGTCTGATCTTCCAACTACCAATGGTGCAATTCAAACCCAATATCAGTAATAAGTATAACTACGTGTTCTTTTTCTTTTGTTGACCGGTCAAATCTTCGTTTACCATTACATAGTAGCATAGGTTTTGCTCCTTAATTTCTATCTTAGAGTTTGTATTTTTTTTTTTTTTTTATTGTGTGTTTGGTTTTGGTTTGGGTGGTATATGAATATGGATCTAGTACTAGTTTTTTTTCTTTTCATTTTCCCTCTCCCTCTCCCTCTCTCACCTTCTATCATTTAGTTCTTTTTGTGTAACTTAGTTAATGGTGTGCTCGGATAAGTTATTAATTTGAAGACCATAGAGTTTAAAATTGTATTATGTATAACGTAGTCTATTTTGAATTCTTGTTATTAGGTGCTAAGTTTCTTAATTTTATGTTTGTCTAGCTTTTTTTTTACTTTCTTTTTTTGTTATTTTTTTTTTTAGCTTAAGTCCCAGATTATTTCAAACGCCTAACAAATAATTATATATTGTTCTAACTCTAACTAAAGCATATGTTAGAGGTTTTGGTTCTCTTCAAAGAAGATATATATGATGTATTTGATATCATACAACATAAAAGGAAGAGATTAAAAGAAATAATTAATTAGTTTAATTTGATCATATGGAAAAACATATTAAACCCTAAAGTTTTGAGTGGACCAAAGAAGTGTATCCCACACCAGCTTTACTCTTTCTTTTATAAAGTAATCTAGTATTTGTATGGGTAATCTTGTGGTATGTAATTATGTATGGGTTGAGACAATGAAGAAATATTATGCTGGAGTATTCTCTTTCATTTATTTTACTTTCCAATAATCTCTTCTCTTTCTATATCTTTTTTCGATCAACACTATACTAGAGTCTGACATGGAGTTGGTGATTCTAGTGGGTGGCATAGGGAAGTGGAAGATTTTGTTTTTTAACGAGAAATCGAGGAACCTAATGCAAAACCAGTCTTTTGAAAGAGTTTCCTCAAACGGCATTGCAGAATATTCTTGCTGTTTCCAATTCCTAGTGAAGAGAAAGAATCCACTTTCACTGAACTTACGCTCTGCTGATACTTGTCTTTCTCCGCTATGTTGTCCCATTAAATTGAAATTAGAGAAATGATATTTGTACGATGACACGACTCTCTCGTACTCTCGCTCTTACTCTCTTTCTCTTTTTGTTTTTGTCTCTAAAGAAGAAGGAAGAAACATGTTGTCCTAAAATGTGTCACAAAATAATAAAAACCTCTCCCTAGAATTTTCTCTCTGACCTCTCTCTAAACACTACACGCGCCTTCCTCCTCATATCCAAACTTTTCTTTTCTGATGTAGTGTACTTGAGTGGTGGTGCGACGAGGTTCAACCTCCGCACCACCGGTGACTCCCTCTCCTTTCGGCGGTTTTGGGTTCAGATCTACCACCGGTGTATCTCTGTTCTGGTGTTCTTCCAGTATGAGAGAGCTAGGCAGTGGTGCCTCCGCCTCGCCGGAGGGTTTGTGGAGTTACAGGGAGCGGCGCCGCCTCCGTCGGGCTCCGCAGTTGGTGGGCCGCGTCGGCGCGTCGCGGGGGTTTTGTCTTCCCTCCTTTAA

Protein sequence

>MS.gene44959.t1

MIQELFGNGASATLTSSERNYSSINGGVGGVLLQPTTQPPSSRPSSTTTTTTTTAPTTVTTTTTASSENQPHLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKSINASNSAAKTTTNKMKTVSSEFNGRSTSGQGFDLEHVVPPQSQILWGSPQNSHILSLLRSSQNQNPNPNHVKEEGNNFIGSHVSHMMSSQPLISSNGYDGVGHVLCNPFWRNNHDNQTQQLQNGGFVLGDQQHHHHQNSGIQELYQKLRSSTTSSSSGNNYCSEISSSPTPTVLLGNVASNSSSISNILETTSVTGGELGYWNPIPTLTWSDLPTTNVYLSGGATRFNLRTTGDSLSFRRFWVQIYHRCISVLVFFQYERARQWCLRLAGGFVELQGAAPPPSGSAVGGPRRRVAGVLSSLL