AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene44959

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene44959.t1 MTR_8g479350 90.145 345 23 5 1 344 1 335 0.0 543
MS.gene44959.t1 MTR_4g063780 68.354 79 16 1 70 139 72 150 4.50e-32 124
MS.gene44959.t1 MTR_2g096740 76.190 63 15 0 73 135 62 124 4.60e-32 123
MS.gene44959.t1 MTR_2g096740 76.190 63 15 0 73 135 77 139 4.64e-32 124
MS.gene44959.t1 MTR_7g024670 76.562 64 15 0 74 137 78 141 1.12e-30 121
MS.gene44959.t1 MTR_8g068210 55.556 90 40 0 60 149 19 108 3.52e-30 119
MS.gene44959.t1 MTR_5g031440 87.037 54 7 0 70 123 40 93 7.19e-30 119
MS.gene44959.t1 MTR_4g088580 75.806 62 15 0 74 135 56 117 1.18e-29 119
MS.gene44959.t1 MTR_3g090430 59.036 83 30 1 48 126 22 104 2.36e-29 117
MS.gene44959.t1 MTR_8g079060 57.143 84 36 0 65 148 21 104 3.77e-29 114
MS.gene44959.t1 MTR_7g059400 78.947 57 12 0 70 126 73 129 3.91e-29 117
MS.gene44959.t1 MTR_8g027295 63.158 76 28 0 70 145 21 96 4.26e-29 115
MS.gene44959.t1 MTR_3g091820 62.338 77 29 0 50 126 20 96 8.37e-29 115
MS.gene44959.t1 MTR_4g461080 84.906 53 8 0 73 125 29 81 1.54e-28 113
MS.gene44959.t1 MTR_8g015840 80.000 55 11 0 70 124 17 71 2.11e-28 111
MS.gene44959.t1 MTR_4g022370 81.481 54 10 0 73 126 82 135 2.47e-28 115
MS.gene44959.t1 MTR_4g109980 86.275 51 7 0 73 123 40 90 2.74e-28 114
MS.gene44959.t1 MTR_2g093220 85.185 54 8 0 73 126 40 93 4.11e-28 112
MS.gene44959.t1 MTR_1g056810 81.034 58 11 0 69 126 8 65 1.69e-27 111
MS.gene44959.t1 MTR_2g014060 83.636 55 8 1 70 124 23 76 3.62e-27 111
MS.gene44959.t1 MTR_4g089095 78.947 57 11 1 72 128 49 104 6.68e-27 109
MS.gene44959.t1 MTR_4g089095 78.947 57 11 1 72 128 15 70 7.00e-27 108
MS.gene44959.t1 MTR_3g077750 78.571 56 9 1 71 123 56 111 9.38e-27 110
MS.gene44959.t1 MTR_2g059540 85.714 49 7 0 73 121 31 79 1.84e-26 106
MS.gene44959.t1 MTR_1g077600 72.414 58 16 0 68 125 38 95 4.51e-26 107
MS.gene44959.t1 MTR_1g077600 72.414 58 16 0 68 125 38 95 4.76e-26 106
MS.gene44959.t1 MTR_2g014170 83.673 49 8 0 73 121 45 93 7.66e-26 107
MS.gene44959.t1 MTR_2g016030 50.515 97 42 2 75 171 49 139 8.51e-26 102
MS.gene44959.t1 MTR_2g013370 73.214 56 14 1 73 128 46 100 7.59e-25 103
MS.gene44959.t1 MTR_4g082060 50.000 98 43 2 40 131 83 180 1.28e-24 105
MS.gene44959.t1 MTR_6g012450 75.926 54 13 0 73 126 136 189 2.75e-24 105
MS.gene44959.t1 MTR_7g010950 43.590 117 48 2 29 127 73 189 2.94e-24 105
MS.gene44959.t1 MTR_6g027460 41.270 126 70 2 41 162 60 185 3.32e-24 103
MS.gene44959.t1 MTR_5g041420 52.577 97 40 2 44 135 105 200 3.62e-24 102
MS.gene44959.t1 MTR_7g086780 57.895 76 32 0 73 148 99 174 4.99e-24 103
MS.gene44959.t1 MTR_3g435480 72.222 54 15 0 73 126 136 189 1.19e-23 103
MS.gene44959.t1 MTR_6g027450 47.826 92 44 2 41 128 53 144 1.66e-23 100
MS.gene44959.t1 MTR_8g044220 56.164 73 32 0 73 145 118 190 1.74e-23 102
MS.gene44959.t1 MTR_5g041530 41.538 130 70 2 14 138 76 204 1.99e-23 101
MS.gene44959.t1 MTR_5g041380 47.872 94 47 1 44 135 96 189 3.90e-22 97.8
MS.gene44959.t1 MTR_5g041400 48.936 94 46 1 44 135 88 181 4.22e-22 97.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene44959.t1 AT5G60200 58.416 101 35 3 63 160 42 138 7.21e-32 122
MS.gene44959.t1 AT5G65590 54.455 101 46 0 37 137 5 105 1.96e-31 122
MS.gene44959.t1 AT1G07640 90.566 53 5 0 73 125 21 73 6.43e-31 120
MS.gene44959.t1 AT1G51700 63.750 80 23 1 51 124 5 84 7.91e-31 117
MS.gene44959.t1 AT1G07640 90.566 53 5 0 73 125 77 129 9.67e-31 121
MS.gene44959.t1 AT1G07640 90.566 53 5 0 73 125 85 137 1.26e-30 120
MS.gene44959.t1 AT2G28810 86.538 52 7 0 73 124 77 128 4.64e-30 119
MS.gene44959.t1 AT5G60850 70.270 74 17 1 73 141 51 124 5.34e-30 118
MS.gene44959.t1 AT2G28810 86.538 52 7 0 73 124 94 145 7.55e-30 119
MS.gene44959.t1 AT3G21270 88.679 53 6 0 73 125 29 81 8.41e-30 115
MS.gene44959.t1 AT2G37590 78.947 57 12 0 70 126 86 142 1.46e-29 117
MS.gene44959.t1 AT3G45610 48.739 119 46 2 20 138 2 105 6.13e-29 114
MS.gene44959.t1 AT4G38000 67.105 76 24 1 52 126 20 95 1.32e-28 113
MS.gene44959.t1 AT5G02460 83.333 54 9 0 73 126 95 148 1.60e-28 116
MS.gene44959.t1 AT3G55370 73.134 67 15 1 73 139 76 139 1.98e-28 114
MS.gene44959.t1 AT3G55370 73.134 67 15 1 73 139 76 139 2.34e-28 115
MS.gene44959.t1 AT3G55370 70.000 70 18 1 70 139 118 184 2.81e-28 115
MS.gene44959.t1 AT3G50410 73.016 63 17 0 63 125 20 82 8.61e-28 111
MS.gene44959.t1 AT1G28310 53.125 96 44 1 34 128 11 106 9.39e-28 112
MS.gene44959.t1 AT1G28310 78.571 56 12 0 73 128 27 82 1.28e-27 112
MS.gene44959.t1 AT3G61850 56.383 94 40 1 34 126 22 115 1.77e-27 110
MS.gene44959.t1 AT3G61850 56.383 94 40 1 34 126 22 115 1.77e-27 110
MS.gene44959.t1 AT3G61850 56.383 94 40 1 34 126 34 127 1.95e-27 111
MS.gene44959.t1 AT5G66940 60.274 73 29 0 67 139 26 98 1.95e-27 109
MS.gene44959.t1 AT3G52440 71.014 69 17 1 75 140 27 95 2.21e-27 109
MS.gene44959.t1 AT3G61850 56.383 94 40 1 34 126 22 115 2.78e-27 111
MS.gene44959.t1 AT3G52440 71.014 69 17 1 75 140 46 114 3.07e-27 110
MS.gene44959.t1 AT3G61850 56.383 94 40 1 34 126 34 127 3.25e-27 111
MS.gene44959.t1 AT2G28510 82.692 52 9 0 75 126 50 101 3.32e-27 110
MS.gene44959.t1 AT1G21340 55.056 89 39 1 75 162 40 128 9.95e-27 108
MS.gene44959.t1 AT4G00940 57.471 87 37 0 63 149 58 144 1.51e-26 108
MS.gene44959.t1 AT4G00940 57.471 87 37 0 63 149 58 144 1.51e-26 108
MS.gene44959.t1 AT4G00940 57.471 87 37 0 63 149 58 144 1.51e-26 108
MS.gene44959.t1 AT4G21050 65.625 64 22 0 71 134 22 85 3.48e-26 105
MS.gene44959.t1 AT4G24060 70.968 62 18 0 65 126 45 106 5.62e-26 108
MS.gene44959.t1 AT5G62940 80.000 50 10 0 74 123 74 123 2.74e-25 106
MS.gene44959.t1 AT5G39660 51.402 107 35 1 38 127 86 192 8.86e-25 106
MS.gene44959.t1 AT5G39660 51.402 107 35 1 38 127 86 192 8.86e-25 106
MS.gene44959.t1 AT5G39660 51.402 107 35 1 38 127 86 192 8.86e-25 106
MS.gene44959.t1 AT1G29160 59.459 74 30 0 53 126 42 115 1.30e-24 100
MS.gene44959.t1 AT2G34140 48.387 93 41 1 34 126 26 111 3.01e-24 99.0
MS.gene44959.t1 AT3G47500 74.545 55 14 0 73 127 110 164 4.26e-24 104
MS.gene44959.t1 AT2G46590 54.444 90 30 3 42 120 26 115 6.11e-24 102
MS.gene44959.t1 AT2G46590 52.809 89 40 1 34 120 39 127 6.81e-24 102
MS.gene44959.t1 AT1G69570 55.844 77 34 0 63 139 122 198 1.03e-23 102
MS.gene44959.t1 AT1G64620 71.930 57 16 0 65 121 41 97 1.10e-23 101
MS.gene44959.t1 AT1G26790 45.794 107 51 3 57 160 92 194 1.84e-23 101
MS.gene44959.t1 AT5G62430 74.074 54 14 0 73 126 54 107 2.29e-23 99.8
MS.gene44959.t1 AT1G47655 49.412 85 33 1 37 121 3 77 5.68e-23 96.7
MS.gene44959.t1 AT4G21040 73.585 53 14 0 75 127 27 79 2.42e-22 95.5
MS.gene44959.t1 AT4G21080 61.538 65 25 0 75 139 27 91 1.54e-21 93.6
MS.gene44959.t1 AT4G21030 56.000 50 22 0 75 124 23 72 3.67e-13 68.6

Find 146 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTCTCCTTTCGGCGGTTT+TGG 0.060971 8.1:-28495067 MS.gene44959:CDS
TCATGATTGTTTCTCCAAAA+TGG 0.139233 8.1:+28496767 None:intergenic
TTCCTCTATATCCAACATTT+TGG 0.175939 8.1:-28496543 MS.gene44959:CDS
TCAGTTACTGGTGGTGAATT+AGG 0.188537 8.1:-28496512 MS.gene44959:CDS
TCCTCCAACTCCTCCATTAA+TGG 0.195655 8.1:+28497402 None:intergenic
CATGATTAGGGTTAGGGTTT+TGG 0.228883 8.1:+28496900 None:intergenic
CCTTCTTCCTTAACATGATT+AGG 0.237816 8.1:+28496887 None:intergenic
CACCATTACCAAAGAGTTCT+TGG 0.238413 8.1:+28497464 None:intergenic
GTGGTGGTGGTTGTGGAAGA+TGG 0.243950 8.1:+28497340 None:intergenic
CGGAGGGTTTGTGGAGTTAC+AGG 0.256886 8.1:-28494964 MS.gene44959:CDS
TTAGTTTCTGGTACAGTTCT+TGG 0.259576 8.1:+28496666 None:intergenic
CTTCTTCCTTAACATGATTA+GGG 0.273935 8.1:+28496888 None:intergenic
AGAAACTACTCTTCCATTAA+TGG 0.274062 8.1:-28497415 MS.gene44959:CDS
ACAGTTTCTTCAGAGTTTAA+TGG 0.275960 8.1:-28497040 MS.gene44959:CDS
GCAAGACATGCCGTCGTTAC+TGG 0.280270 8.1:-28497171 MS.gene44959:CDS
TTGGAGACAACTTCAGTTAC+TGG 0.287644 8.1:-28496524 MS.gene44959:CDS
TTGTTGATGACCTTAGTTTC+TGG 0.307492 8.1:+28496654 None:intergenic
GGGCCGCGTCGGCGCGTCGC+GGG 0.307563 8.1:-28494906 MS.gene44959:CDS
GAAGAAGGCAATAACTTCAT+AGG 0.324773 8.1:-28496872 MS.gene44959:CDS
TGGTGCAGTGGTGGTGGTGG+TGG 0.332078 8.1:+28497324 None:intergenic
CAAAATGGTGGATTTGTACT+TGG 0.338045 8.1:-28496725 MS.gene44959:CDS
CAGTTACTGGTGGTGAATTA+GGG 0.346171 8.1:-28496511 MS.gene44959:CDS
CCTTAACATGATTAGGGTTA+GGG 0.353211 8.1:+28496894 None:intergenic
CAAACTCAACAATTACAAAA+TGG 0.354663 8.1:-28496740 MS.gene44959:CDS
TCCTTAACATGATTAGGGTT+AGG 0.359817 8.1:+28496893 None:intergenic
GGAGCGGCGCCGCCTCCGTC+GGG 0.363116 8.1:-28494942 MS.gene44959:CDS
GACCAAGTTAGTGTTGGAAT+TGG 0.366230 8.1:+28496479 None:intergenic
CCAACACCAACAGTGTTACT+AGG 0.367483 8.1:-28496584 MS.gene44959:CDS
CATGATTGTTTCTCCAAAAT+GGG 0.372690 8.1:+28496768 None:intergenic
CAGAAAACCAACCACATCTA+AGG 0.374661 8.1:-28497270 MS.gene44959:CDS
CCGCCTCGCCGGAGGGTTTG+TGG 0.377617 8.1:-28494973 MS.gene44959:CDS
GGGAGCGGCGCCGCCTCCGT+CGG 0.382890 8.1:-28494943 MS.gene44959:CDS
CCACCGGTGTATCTCTGTTC+TGG 0.383035 8.1:-28495033 MS.gene44959:CDS
TGGTGGTGGTTGTGGAAGAT+GGG 0.383636 8.1:+28497341 None:intergenic
TTTCCGACAGCCACCTCCTA+TGG 0.383757 8.1:+28497120 None:intergenic
GGCCGCGTCGGCGCGTCGCG+GGG 0.388459 8.1:-28494905 MS.gene44959:CDS
GACGGCATGTCTTGCAGAAA+TGG 0.400957 8.1:+28497179 None:intergenic
CACCACAAAGTCAAATCCTC+TGG 0.406936 8.1:-28496973 MS.gene44959:CDS
GAAGAAGGAGGTTGTGTTGT+TGG 0.410788 8.1:+28497367 None:intergenic
ACTGCCTAGCTCTCTCATAC+TGG 0.411079 8.1:+28495003 None:intergenic
TGGGCCGCGTCGGCGCGTCG+CGG 0.411804 8.1:-28494907 MS.gene44959:CDS
CCGCAGTTGGTGGGCCGCGT+CGG 0.413971 8.1:-28494917 MS.gene44959:CDS
CCCTAACCCTAATCATGTTA+AGG 0.421766 8.1:-28496894 MS.gene44959:CDS
CCCCAGAGGATTTGACTTTG+TGG 0.425921 8.1:+28496971 None:intergenic
TGCGGTGGTGGTTGTGGTGA+CGG 0.433800 8.1:+28497297 None:intergenic
CTCCAAAATGTTGGATATAG+AGG 0.436023 8.1:+28496541 None:intergenic
CAGCCGTTGATTTCGTCAAA+TGG 0.436916 8.1:-28496821 MS.gene44959:CDS
TCCATTAATGGAGGAGTTGG+AGG 0.440892 8.1:-28497403 MS.gene44959:CDS
CCGTCGGGCTCCGCAGTTGG+TGG 0.445769 8.1:-28494927 MS.gene44959:CDS
CCTAATCATGTTAAGGAAGA+AGG 0.447706 8.1:-28496887 MS.gene44959:CDS
GTGGTTGTGGTGACGGTGGT+TGG 0.448495 8.1:+28497304 None:intergenic
GTGGAAGATGGGCGTGAAGA+AGG 0.452402 8.1:+28497352 None:intergenic
CCTCCGTCGGGCTCCGCAGT+TGG 0.452621 8.1:-28494930 MS.gene44959:CDS
CAGTGGTGCCTCCGCCTCGC+CGG 0.456451 8.1:-28494984 MS.gene44959:CDS
GGACAAAAGGAGGTGCTTTG+AGG 0.473653 8.1:-28497150 MS.gene44959:CDS
ATCCAATTCCAACACTAACT+TGG 0.474024 8.1:-28496481 MS.gene44959:CDS
GGTGGTTGGTGCAGTGGTGG+TGG 0.475125 8.1:+28497318 None:intergenic
AAGATGATCCAAGAACTCTT+TGG 0.477513 8.1:-28497472 MS.gene44959:CDS
TGCCGTCGTTACTGGACAAA+AGG 0.477938 8.1:-28497163 MS.gene44959:CDS
AAAATGGTGGATTTGTACTT+GGG 0.478306 8.1:-28496724 MS.gene44959:CDS
ACTGCGGAGCCCGACGGAGG+CGG 0.478427 8.1:+28494933 None:intergenic
ATTTCGTCAAATGGTTATGA+TGG 0.478918 8.1:-28496812 MS.gene44959:CDS
TGATGATGCGGTGGTGGTTG+TGG 0.481556 8.1:+28497291 None:intergenic
TCTTCCATTAATGGAGGAGT+TGG 0.482425 8.1:-28497406 MS.gene44959:CDS
GGTTGGTGCAGTGGTGGTGG+TGG 0.494544 8.1:+28497321 None:intergenic
TGGTGCCTCCGCCTCGCCGG+AGG 0.494974 8.1:-28494981 MS.gene44959:CDS
GCCGCGTCGGCGCGTCGCGG+GGG 0.495969 8.1:-28494904 MS.gene44959:CDS
AAGAACTGTACCAGAAACTA+AGG 0.497513 8.1:-28496664 MS.gene44959:CDS
CCCAAAACCGCCGAAAGGAG+AGG 0.498679 8.1:+28495066 None:intergenic
CTGGTGGTGAATTAGGGTAC+TGG 0.503929 8.1:-28496505 MS.gene44959:CDS
CCGACGCGGCCCACCAACTG+CGG 0.504519 8.1:+28494917 None:intergenic
TCAACAACATCATCATCATC+AGG 0.508236 8.1:-28496638 MS.gene44959:CDS
GTGTTTGATGAGTCACATCT+TGG 0.511366 8.1:+28497244 None:intergenic
CAAACCCTCCGGCGAGGCGG+AGG 0.512507 8.1:+28494976 None:intergenic
GGTGCCTCCGCCTCGCCGGA+GGG 0.513195 8.1:-28494980 MS.gene44959:CDS
CCGGTGACTCCCTCTCCTTT+CGG 0.514563 8.1:-28495076 MS.gene44959:CDS
ATCCAAGAACTCTTTGGTAA+TGG 0.516650 8.1:-28497466 MS.gene44959:CDS
TTGGACACCTTAGATGTGGT+TGG 0.518935 8.1:+28497263 None:intergenic
GACGGTGGTTGGTGCAGTGG+TGG 0.519460 8.1:+28497315 None:intergenic
TCTTCCAGTATGAGAGAGCT+AGG 0.523076 8.1:-28495007 MS.gene44959:CDS
TGAAGTTGTCTCCAAAATGT+TGG 0.525052 8.1:+28496532 None:intergenic
TGAATTGCACCATTGGTAGT+TGG 0.526899 8.1:+28496449 None:intergenic
AGAGGGAGTCACCGGTGGTG+CGG 0.530254 8.1:+28495084 None:intergenic
ACCACAAAGTCAAATCCTCT+GGG 0.532491 8.1:-28496972 MS.gene44959:CDS
CGTCGGGCTCCGCAGTTGGT+GGG 0.533930 8.1:-28494926 MS.gene44959:CDS
AAGAAGGCAATAACTTCATA+GGG 0.534937 8.1:-28496871 MS.gene44959:CDS
AGGTTCAACCTCCGCACCAC+CGG 0.536323 8.1:-28495095 MS.gene44959:CDS
GTTTGTGGAGTTACAGGGAG+CGG 0.536908 8.1:-28494958 MS.gene44959:CDS
TTCCGACAGCCACCTCCTAT+GGG 0.538444 8.1:+28497121 None:intergenic
CCTAGTAACACTGTTGGTGT+TGG 0.540794 8.1:+28496584 None:intergenic
GGAGGGTTTGTGGAGTTACA+GGG 0.545723 8.1:-28494963 MS.gene44959:CDS
GGAAGGTCAACAAGTGGTCA+AGG 0.546021 8.1:-28497019 MS.gene44959:CDS
CAAATGGTTATGATGGTGTT+GGG 0.551359 8.1:-28496805 MS.gene44959:CDS
GGGAGTCACCGGTGGTGCGG+AGG 0.555337 8.1:+28495087 None:intergenic
GTTTCTTTCACTTGAAGTGA+GGG 0.555832 8.1:+28497432 None:intergenic
TCAAATGGTTATGATGGTGT+TGG 0.557845 8.1:-28496806 MS.gene44959:CDS
CCAAAACCGCCGAAAGGAGA+GGG 0.557938 8.1:+28495067 None:intergenic
GGTGACGGTGGTTGGTGCAG+TGG 0.560684 8.1:+28497312 None:intergenic
TTGAGGAACGTTCCCATAGG+AGG 0.560915 8.1:-28497133 MS.gene44959:CDS
CCGAAAGGAGAGGGAGTCAC+CGG 0.562811 8.1:+28495076 None:intergenic
CAGAGGATTTGACTTTGTGG+TGG 0.563970 8.1:+28496974 None:intergenic
AGGAACGTTCCCATAGGAGG+TGG 0.565496 8.1:-28497130 MS.gene44959:CDS
AGATCAGACCAAGTTAGTGT+TGG 0.571260 8.1:+28496473 None:intergenic
AGTTTCTTTCACTTGAAGTG+AGG 0.580149 8.1:+28497431 None:intergenic
CAACACCAACAGTGTTACTA+GGG 0.580552 8.1:-28496583 MS.gene44959:CDS
CCACCAACTGCGGAGCCCGA+CGG 0.580885 8.1:+28494927 None:intergenic
TCTGATGTAGTGTACTTGAG+TGG 0.582075 8.1:-28495128 MS.gene44959:intron
AAATGGTGGATTTGTACTTG+GGG 0.583095 8.1:-28496723 MS.gene44959:CDS
AGTATGAGAGAGCTAGGCAG+TGG 0.589232 8.1:-28495001 MS.gene44959:CDS
TTCCCATAGGAGGTGGCTGT+CGG 0.589355 8.1:-28497123 MS.gene44959:CDS
ACTCAACAATTACAAAATGG+TGG 0.590751 8.1:-28496737 MS.gene44959:CDS
CTGTAACTCCACAAACCCTC+CGG 0.590785 8.1:+28494965 None:intergenic
TTTGGGTTCAGATCTACCAC+CGG 0.594077 8.1:-28495049 MS.gene44959:CDS
TCTGATCTTCCAACTACCAA+TGG 0.595789 8.1:-28496458 MS.gene44959:intron
TTTCTTCAGAGTTTAATGGA+AGG 0.603721 8.1:-28497036 MS.gene44959:CDS
GTGAACGAAGCCTTAAAGGA+GGG 0.610129 8.1:+28494872 None:intergenic
AACTCATCATGTGAGAAACA+TGG 0.610751 8.1:+28496846 None:intergenic
GAAGGTCAACAAGTGGTCAA+GGG 0.612566 8.1:-28497018 MS.gene44959:CDS
CGTCGTTACTGGACAAAAGG+AGG 0.618133 8.1:-28497160 MS.gene44959:CDS
GCTTTGAGGAACGTTCCCAT+AGG 0.619952 8.1:-28497136 MS.gene44959:CDS
GAAGATGGGCGTGAAGAAGG+AGG 0.621383 8.1:+28497355 None:intergenic
CCACAAACCCTCCGGCGAGG+CGG 0.625597 8.1:+28494973 None:intergenic
CATCTTGGACACCTTAGATG+TGG 0.628308 8.1:+28497259 None:intergenic
AACTACTCTTCCATTAATGG+AGG 0.630490 8.1:-28497412 MS.gene44959:CDS
CTGAACCCAAAACCGCCGAA+AGG 0.642573 8.1:+28495061 None:intergenic
CCAACTGCGGAGCCCGACGG+AGG 0.644017 8.1:+28494930 None:intergenic
TAACCATTTGACGAAATCAA+CGG 0.644257 8.1:+28496818 None:intergenic
AAAGGAGAGGGAGTCACCGG+TGG 0.644571 8.1:+28495079 None:intergenic
GAGACAACTTCAGTTACTGG+TGG 0.647714 8.1:-28496521 MS.gene44959:CDS
GTGACTCCCTCTCCTTTCGG+CGG 0.648037 8.1:-28495073 MS.gene44959:CDS
CATGTCTTGCAGAAATGGCG+AGG 0.648175 8.1:+28497184 None:intergenic
CATCACCATCATCAAAACAG+TGG 0.654071 8.1:-28496692 MS.gene44959:CDS
AGTGAACGAAGCCTTAAAGG+AGG 0.655338 8.1:+28494871 None:intergenic
ACTCATCATGTGAGAAACAT+GGG 0.656250 8.1:+28496847 None:intergenic
GATGTAGTGTACTTGAGTGG+TGG 0.658986 8.1:-28495125 MS.gene44959:intron
GGTGGTGGTTGTGGTGACGG+TGG 0.663797 8.1:+28497300 None:intergenic
TTTAATGGAAGGTCAACAAG+TGG 0.666542 8.1:-28497025 MS.gene44959:CDS
ACACCAGAACAGAGATACAC+CGG 0.681233 8.1:+28495030 None:intergenic
ACTTGAGTGGTGGTGCGACG+AGG 0.681548 8.1:-28495115 MS.gene44959:CDS
AACAGTGTTACTAGGGAACG+TGG 0.681785 8.1:-28496576 MS.gene44959:CDS
ACGTTCCCTAGTAACACTGT+TGG 0.689714 8.1:+28496578 None:intergenic
ACTCCACAAACCCTCCGGCG+AGG 0.695652 8.1:+28494970 None:intergenic
AGAAATGGCGAGGCTGAGTG+AGG 0.701300 8.1:+28497194 None:intergenic
TATCAACGCCTCAAATAGCG+CGG 0.706731 8.1:-28497089 MS.gene44959:CDS
CCACAAAGTCAAATCCTCTG+GGG 0.739195 8.1:-28496971 MS.gene44959:CDS
CCAGAACAGAGATACACCGG+TGG 0.775606 8.1:+28495033 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAATATATAATTATTTGTT+AGG + chr8.1:28496388-28496407 None:intergenic 10.0%
!! TTATACTTATTACTGATATT+GGG + chr8.1:28495932-28495951 None:intergenic 15.0%
!! TTCTCTAATTTCAATTTAAT+GGG + chr8.1:28497002-28497021 None:intergenic 15.0%
!! TTTCTCTAATTTCAATTTAA+TGG + chr8.1:28497003-28497022 None:intergenic 15.0%
!!! ATTAGTTTAATTTGATCATA+TGG - chr8.1:28496519-28496538 MS.gene44959:CDS 15.0%
!!! TAATACAATTTTAAACTCTA+TGG + chr8.1:28496232-28496251 None:intergenic 15.0%
!!! TATTTTGAATTCTTGTTATT+AGG - chr8.1:28496266-28496285 MS.gene44959:intron 15.0%
!!! TTTTTTTTTTATTGTGTGTT+TGG - chr8.1:28496055-28496074 MS.gene44959:intron 15.0%
!! AAAAAGAACTAAATGATAGA+AGG + chr8.1:28496162-28496181 None:intergenic 20.0%
!! AAAGTAATCTAGTATTTGTA+TGG - chr8.1:28496617-28496636 MS.gene44959:CDS 20.0%
!! AAGTAATCTAGTATTTGTAT+GGG - chr8.1:28496618-28496637 MS.gene44959:CDS 20.0%
!! GTTATACTTATTACTGATAT+TGG + chr8.1:28495933-28495952 None:intergenic 20.0%
!! TTGATATCATACAACATAAA+AGG - chr8.1:28496474-28496493 MS.gene44959:CDS 20.0%
!!! AAACTCTAAGATAGAAATTA+AGG + chr8.1:28496026-28496045 None:intergenic 20.0%
!!! ATTATTTTGTGACACATTTT+AGG + chr8.1:28497123-28497142 None:intergenic 20.0%
!!! TTTTTGTGTAACTTAGTTAA+TGG - chr8.1:28496177-28496196 MS.gene44959:intron 20.0%
! AAAAGAAAAGTTTGGATATG+AGG + chr8.1:28497206-28497225 None:intergenic 25.0%
! ACAATGAAGAAATATTATGC+TGG - chr8.1:28496675-28496694 MS.gene44959:CDS 25.0%
! ATAGAAAGAGAAGAGATTAT+TGG + chr8.1:28496728-28496747 None:intergenic 25.0%
! CAAACTCAACAATTACAAAA+TGG - chr8.1:28495613-28495632 MS.gene44959:intron 25.0%
! TACATCAGAAAAGAAAAGTT+TGG + chr8.1:28497214-28497233 None:intergenic 25.0%
! TATAAAAGAAAGAGTAAAGC+TGG + chr8.1:28496598-28496617 None:intergenic 25.0%
! TGTGGTATGTAATTATGTAT+GGG - chr8.1:28496647-28496666 MS.gene44959:CDS 25.0%
! TTGTGGTATGTAATTATGTA+TGG - chr8.1:28496646-28496665 MS.gene44959:CDS 25.0%
!!! GAAAGTATATGAGAATTTTG+AGG + chr8.1:28495412-28495431 None:intergenic 25.0%
!!! TTTTATTGTGTGTTTGGTTT+TGG - chr8.1:28496061-28496080 MS.gene44959:intron 25.0%
AAACCTATGCTACTATGTAA+TGG + chr8.1:28495999-28496018 None:intergenic 30.0%
AAGAAGGCAATAACTTCATA+GGG - chr8.1:28495482-28495501 MS.gene44959:intron 30.0%
AATTTAATGGGACAACATAG+CGG + chr8.1:28496990-28497009 None:intergenic 30.0%
ACAGTTTCTTCAGAGTTTAA+TGG - chr8.1:28495313-28495332 MS.gene44959:intron 30.0%
ACTCAACAATTACAAAATGG+TGG - chr8.1:28495616-28495635 MS.gene44959:intron 30.0%
AGAAACTACTCTTCCATTAA+TGG - chr8.1:28494938-28494957 MS.gene44959:CDS 30.0%
ATTTCGTCAAATGGTTATGA+TGG - chr8.1:28495541-28495560 MS.gene44959:intron 30.0%
CTAACTAAAGCATATGTTAG+AGG - chr8.1:28496415-28496434 MS.gene44959:intron 30.0%
CTTCTTCCTTAACATGATTA+GGG + chr8.1:28495468-28495487 None:intergenic 30.0%
TAACCATTTGACGAAATCAA+CGG + chr8.1:28495538-28495557 None:intergenic 30.0%
TATTTGTATGGGTAATCTTG+TGG - chr8.1:28496629-28496648 MS.gene44959:CDS 30.0%
TTACCATTACATAGTAGCAT+AGG - chr8.1:28495993-28496012 MS.gene44959:intron 30.0%
TTTCTTCAGAGTTTAATGGA+AGG - chr8.1:28495317-28495336 MS.gene44959:intron 30.0%
TTTGAAAGAGTTTCCTCAAA+CGG - chr8.1:28496873-28496892 MS.gene44959:CDS 30.0%
! AAAGCATATGTTAGAGGTTT+TGG - chr8.1:28496421-28496440 MS.gene44959:intron 30.0%
! ATGTTTTATGCAACCCATTT+TGG - chr8.1:28495572-28495591 MS.gene44959:intron 30.0%
! CATGATTGTTTCTCCAAAAT+GGG + chr8.1:28495588-28495607 None:intergenic 30.0%
! GTTCTTTTTCTTTTGTTGAC+CGG - chr8.1:28495958-28495977 MS.gene44959:intron 30.0%
! TCATGATTGTTTCTCCAAAA+TGG + chr8.1:28495589-28495608 None:intergenic 30.0%
! TTAGGCGTTTGAAATAATCT+GGG + chr8.1:28496370-28496389 None:intergenic 30.0%
! TTCCTCTATATCCAACATTT+TGG - chr8.1:28495810-28495829 MS.gene44959:intron 30.0%
!! AAAATGGTGGATTTGTACTT+GGG - chr8.1:28495629-28495648 MS.gene44959:intron 30.0%
!! GTTTTTGTCTCTAAAGAAGA+AGG - chr8.1:28497083-28497102 MS.gene44959:CDS 30.0%
!!! TGTTTTTTAACGAGAAATCG+AGG - chr8.1:28496829-28496848 MS.gene44959:CDS 30.0%
!!! TTAAACCCTAAAGTTTTGAG+TGG - chr8.1:28496551-28496570 MS.gene44959:CDS 30.0%
AAATGATAGAAGGTGAGAGA+GGG + chr8.1:28496152-28496171 None:intergenic 35.0%
AACTACTCTTCCATTAATGG+AGG - chr8.1:28494941-28494960 MS.gene44959:CDS 35.0%
AACTCATCATGTGAGAAACA+TGG + chr8.1:28495510-28495529 None:intergenic 35.0%
AACTTAGTTAATGGTGTGCT+CGG - chr8.1:28496186-28496205 MS.gene44959:intron 35.0%
AAGAACTGTACCAGAAACTA+AGG - chr8.1:28495689-28495708 MS.gene44959:intron 35.0%
ACTCATCATGTGAGAAACAT+GGG + chr8.1:28495509-28495528 None:intergenic 35.0%
AGAAAAGTTTGGATATGAGG+AGG + chr8.1:28497203-28497222 None:intergenic 35.0%
AGGAAACTCTTTCAAAAGAC+TGG + chr8.1:28496869-28496888 None:intergenic 35.0%
AGGTCAGAGAGAAAATTCTA+GGG + chr8.1:28497156-28497175 None:intergenic 35.0%
AGTTTCTTTCACTTGAAGTG+AGG + chr8.1:28494925-28494944 None:intergenic 35.0%
ATCCAAGAACTCTTTGGTAA+TGG - chr8.1:28494887-28494906 MS.gene44959:CDS 35.0%
ATCCAATTCCAACACTAACT+TGG - chr8.1:28495872-28495891 MS.gene44959:intron 35.0%
ATGGTAAACGAAGATTTGAC+CGG + chr8.1:28495980-28495999 None:intergenic 35.0%
CCTAATCATGTTAAGGAAGA+AGG - chr8.1:28495466-28495485 MS.gene44959:intron 35.0%
CCTTAACATGATTAGGGTTA+GGG + chr8.1:28495462-28495481 None:intergenic 35.0%
CCTTCTTCCTTAACATGATT+AGG + chr8.1:28495469-28495488 None:intergenic 35.0%
CTCCAAAATGTTGGATATAG+AGG + chr8.1:28495815-28495834 None:intergenic 35.0%
GAAGAAGGCAATAACTTCAT+AGG - chr8.1:28495481-28495500 MS.gene44959:intron 35.0%
GTTTCTTTCACTTGAAGTGA+GGG + chr8.1:28494924-28494943 None:intergenic 35.0%
GTTTGGGTGGTATATGAATA+TGG - chr8.1:28496083-28496102 MS.gene44959:intron 35.0%
TAAATGATAGAAGGTGAGAG+AGG + chr8.1:28496153-28496172 None:intergenic 35.0%
TCAACAACATCATCATCATC+AGG - chr8.1:28495715-28495734 MS.gene44959:intron 35.0%
TCCTTAACATGATTAGGGTT+AGG + chr8.1:28495463-28495482 None:intergenic 35.0%
TCTTTCTCTTCACTAGGAAT+TGG + chr8.1:28496923-28496942 None:intergenic 35.0%
TGAAGTTGTCTCCAAAATGT+TGG + chr8.1:28495824-28495843 None:intergenic 35.0%
TTGGTCCACTCAAAACTTTA+GGG + chr8.1:28496559-28496578 None:intergenic 35.0%
TTTAATGGAAGGTCAACAAG+TGG - chr8.1:28495328-28495347 MS.gene44959:intron 35.0%
TTTGGTCCACTCAAAACTTT+AGG + chr8.1:28496560-28496579 None:intergenic 35.0%
! CAAATGGTTATGATGGTGTT+GGG - chr8.1:28495548-28495567 MS.gene44959:intron 35.0%
! GTTAGGCGTTTGAAATAATC+TGG + chr8.1:28496371-28496390 None:intergenic 35.0%
! TCAAATGGTTATGATGGTGT+TGG - chr8.1:28495547-28495566 MS.gene44959:intron 35.0%
!! AAATGGTGGATTTGTACTTG+GGG - chr8.1:28495630-28495649 MS.gene44959:intron 35.0%
!! CAAAATGGTGGATTTGTACT+TGG - chr8.1:28495628-28495647 MS.gene44959:intron 35.0%
!! TTAGTTTCTGGTACAGTTCT+TGG + chr8.1:28495690-28495709 None:intergenic 35.0%
!! TTGTTGATGACCTTAGTTTC+TGG + chr8.1:28495702-28495721 None:intergenic 35.0%
!!! CAAAAGACTGGTTTTGCATT+AGG + chr8.1:28496857-28496876 None:intergenic 35.0%
!!! TGTGTGTTTGGTTTTGGTTT+GGG - chr8.1:28496067-28496086 MS.gene44959:intron 35.0%
!!! TTGTGTGTTTGGTTTTGGTT+TGG - chr8.1:28496066-28496085 MS.gene44959:intron 35.0%
AAGAAAGAGTAAAGCTGGTG+TGG + chr8.1:28496593-28496612 None:intergenic 40.0%
AAGTTTGGATATGAGGAGGA+AGG + chr8.1:28497199-28497218 None:intergenic 40.0%
ACCACAAAGTCAAATCCTCT+GGG - chr8.1:28495381-28495400 MS.gene44959:intron 40.0%
AGAAAGAGTAAAGCTGGTGT+GGG + chr8.1:28496592-28496611 None:intergenic 40.0%
AGATCAGACCAAGTTAGTGT+TGG + chr8.1:28495883-28495902 None:intergenic 40.0%
CACCATTACCAAAGAGTTCT+TGG + chr8.1:28494892-28494911 None:intergenic 40.0%
CACTATACTAGAGTCTGACA+TGG - chr8.1:28496764-28496783 MS.gene44959:CDS 40.0%
CAGAAAACCAACCACATCTA+AGG - chr8.1:28495083-28495102 MS.gene44959:CDS 40.0%
CATCACCATCATCAAAACAG+TGG - chr8.1:28495661-28495680 MS.gene44959:intron 40.0%
CCCTAACCCTAATCATGTTA+AGG - chr8.1:28495459-28495478 MS.gene44959:intron 40.0%
GAGGTCAGAGAGAAAATTCT+AGG + chr8.1:28497157-28497176 None:intergenic 40.0%
GTGGATTCTTTCTCTTCACT+AGG + chr8.1:28496929-28496948 None:intergenic 40.0%
GTGTTTGATGAGTCACATCT+TGG + chr8.1:28495112-28495131 None:intergenic 40.0%
TCTGATCTTCCAACTACCAA+TGG - chr8.1:28495895-28495914 MS.gene44959:intron 40.0%
TCTGATGTAGTGTACTTGAG+TGG - chr8.1:28497225-28497244 MS.gene44959:CDS 40.0%
TCTTCCATTAATGGAGGAGT+TGG - chr8.1:28494947-28494966 MS.gene44959:CDS 40.0%
TTGGAGACAACTTCAGTTAC+TGG - chr8.1:28495829-28495848 MS.gene44959:intron 40.0%
TTGGGTTTGAATTGCACCAT+TGG + chr8.1:28495914-28495933 None:intergenic 40.0%
! AGAGAGAAAATTCTAGGGAG+AGG + chr8.1:28497151-28497170 None:intergenic 40.0%
! ATATTCTGCAATGCCGTTTG+AGG + chr8.1:28496889-28496908 None:intergenic 40.0%
! CAACACCAACAGTGTTACTA+GGG - chr8.1:28495770-28495789 MS.gene44959:intron 40.0%
! CAGTTACTGGTGGTGAATTA+GGG - chr8.1:28495842-28495861 MS.gene44959:intron 40.0%
! CATGATTAGGGTTAGGGTTT+TGG + chr8.1:28495456-28495475 None:intergenic 40.0%
! GACCAAGTTAGTGTTGGAAT+TGG + chr8.1:28495877-28495896 None:intergenic 40.0%
! TCAGTTACTGGTGGTGAATT+AGG - chr8.1:28495841-28495860 MS.gene44959:intron 40.0%
! TGAATTGCACCATTGGTAGT+TGG + chr8.1:28495907-28495926 None:intergenic 40.0%
!! ATGGAGTTGGTGATTCTAGT+GGG - chr8.1:28496783-28496802 MS.gene44959:CDS 40.0%
!!! GGATTCCACTGTTTTGATGA+TGG + chr8.1:28495669-28495688 None:intergenic 40.0%
!!! TGGTTGGTTTTCTGATGATG+CGG + chr8.1:28495077-28495096 None:intergenic 40.0%
ACACCAGAACAGAGATACAC+CGG + chr8.1:28497326-28497345 None:intergenic 45.0%
ACGTTCCCTAGTAACACTGT+TGG + chr8.1:28495778-28495797 None:intergenic 45.0%
ACTAGAGTCTGACATGGAGT+TGG - chr8.1:28496770-28496789 MS.gene44959:CDS 45.0%
CACCACAAAGTCAAATCCTC+TGG - chr8.1:28495380-28495399 MS.gene44959:intron 45.0%
CATCTTGGACACCTTAGATG+TGG + chr8.1:28495097-28495116 None:intergenic 45.0%
CCACAAAGTCAAATCCTCTG+GGG - chr8.1:28495382-28495401 MS.gene44959:intron 45.0%
CCTAGTAACACTGTTGGTGT+TGG + chr8.1:28495772-28495791 None:intergenic 45.0%
GAAGAAGGAGGTTGTGTTGT+TGG + chr8.1:28494989-28495008 None:intergenic 45.0%
GAAGGTCAACAAGTGGTCAA+GGG - chr8.1:28495335-28495354 MS.gene44959:intron 45.0%
GAGACAACTTCAGTTACTGG+TGG - chr8.1:28495832-28495851 MS.gene44959:intron 45.0%
GAGCGTAAGTTCAGTGAAAG+TGG + chr8.1:28496948-28496967 None:intergenic 45.0%
GATGTAGTGTACTTGAGTGG+TGG - chr8.1:28497228-28497247 MS.gene44959:CDS 45.0%
TATCAACGCCTCAAATAGCG+CGG - chr8.1:28495264-28495283 MS.gene44959:intron 45.0%
TCCATTAATGGAGGAGTTGG+AGG - chr8.1:28494950-28494969 MS.gene44959:CDS 45.0%
TCCTCCAACTCCTCCATTAA+TGG + chr8.1:28494954-28494973 None:intergenic 45.0%
TCTTCCAGTATGAGAGAGCT+AGG - chr8.1:28497346-28497365 MS.gene44959:CDS 45.0%
TGGTGTGGGATACACTTCTT+TGG + chr8.1:28496578-28496597 None:intergenic 45.0%
TTGGACACCTTAGATGTGGT+TGG + chr8.1:28495093-28495112 None:intergenic 45.0%
! AACAGTGTTACTAGGGAACG+TGG - chr8.1:28495777-28495796 MS.gene44959:intron 45.0%
! CAGAGGATTTGACTTTGTGG+TGG + chr8.1:28495382-28495401 None:intergenic 45.0%
! CCAACACCAACAGTGTTACT+AGG - chr8.1:28495769-28495788 MS.gene44959:intron 45.0%
! CTCCTTTTGTCCAGTAACGA+CGG + chr8.1:28495195-28495214 None:intergenic 45.0%
! TGATTCTAGTGGGTGGCATA+GGG - chr8.1:28496793-28496812 MS.gene44959:CDS 45.0%
! TTTGGGTTCAGATCTACCAC+CGG - chr8.1:28497304-28497323 MS.gene44959:CDS 45.0%
!! AATTTTGAGGAGAACCCCAG+AGG + chr8.1:28495399-28495418 None:intergenic 45.0%
!! CAGCCGTTGATTTCGTCAAA+TGG - chr8.1:28495532-28495551 MS.gene44959:intron 45.0%
!! CATGGAGTTGGTGATTCTAG+TGG - chr8.1:28496782-28496801 MS.gene44959:CDS 45.0%
!! TGTTTTTGCCGCGCTATTTG+AGG + chr8.1:28495275-28495294 None:intergenic 45.0%
!! TTGGTTTTCTGATGATGCGG+TGG + chr8.1:28495074-28495093 None:intergenic 45.0%
!!! GTGTTTGGTTTTGGTTTGGG+TGG - chr8.1:28496070-28496089 MS.gene44959:intron 45.0%
AGTATGAGAGAGCTAGGCAG+TGG - chr8.1:28497352-28497371 MS.gene44959:CDS 50.0%
ATAGAAGGTGAGAGAGGGAG+AGG + chr8.1:28496147-28496166 None:intergenic 50.0%
CATGTCTTGCAGAAATGGCG+AGG + chr8.1:28495172-28495191 None:intergenic 50.0%
CGCGTGTAGTGTTTAGAGAG+AGG + chr8.1:28497176-28497195 None:intergenic 50.0%
CGTCGTTACTGGACAAAAGG+AGG - chr8.1:28495193-28495212 MS.gene44959:intron 50.0%
CTGTAACTCCACAAACCCTC+CGG + chr8.1:28497391-28497410 None:intergenic 50.0%
GACGGCATGTCTTGCAGAAA+TGG + chr8.1:28495177-28495196 None:intergenic 50.0%
GGAAGGTCAACAAGTGGTCA+AGG - chr8.1:28495334-28495353 MS.gene44959:intron 50.0%
GGAGGGTTTGTGGAGTTACA+GGG - chr8.1:28497390-28497409 MS.gene44959:CDS 50.0%
GTTTGTGGAGTTACAGGGAG+CGG - chr8.1:28497395-28497414 MS.gene44959:CDS 50.0%
TAGAAGGTGAGAGAGGGAGA+GGG + chr8.1:28496146-28496165 None:intergenic 50.0%
TGCCGTCGTTACTGGACAAA+AGG - chr8.1:28495190-28495209 MS.gene44959:intron 50.0%
TTGAGGAACGTTCCCATAGG+AGG - chr8.1:28495220-28495239 MS.gene44959:intron 50.0%
! ACTGCCTAGCTCTCTCATAC+TGG + chr8.1:28497353-28497372 None:intergenic 50.0%
! CCCCAGAGGATTTGACTTTG+TGG + chr8.1:28495385-28495404 None:intergenic 50.0%
! CTGGTGGTGAATTAGGGTAC+TGG - chr8.1:28495848-28495867 MS.gene44959:intron 50.0%
! GTGATTCTAGTGGGTGGCAT+AGG - chr8.1:28496792-28496811 MS.gene44959:CDS 50.0%
!! GAGTTGGTGATTCTAGTGGG+TGG - chr8.1:28496786-28496805 MS.gene44959:CDS 50.0%
!! GCTTTGAGGAACGTTCCCAT+AGG - chr8.1:28495217-28495236 MS.gene44959:intron 50.0%
!! GGACAAAAGGAGGTGCTTTG+AGG - chr8.1:28495203-28495222 MS.gene44959:intron 50.0%
!! GTTTTCTGATGATGCGGTGG+TGG + chr8.1:28495071-28495090 None:intergenic 50.0%
!! TGGTGGTGGTTGTGGAAGAT+GGG + chr8.1:28495015-28495034 None:intergenic 50.0%
AGAAATGGCGAGGCTGAGTG+AGG + chr8.1:28495162-28495181 None:intergenic 55.0%
AGGAACGTTCCCATAGGAGG+TGG - chr8.1:28495223-28495242 MS.gene44959:intron 55.0%
CCAAAACCGCCGAAAGGAGA+GGG + chr8.1:28497289-28497308 None:intergenic 55.0%
CCACCGGTGTATCTCTGTTC+TGG - chr8.1:28497320-28497339 MS.gene44959:CDS 55.0%
CCAGAACAGAGATACACCGG+TGG + chr8.1:28497323-28497342 None:intergenic 55.0%
CGGAGGGTTTGTGGAGTTAC+AGG - chr8.1:28497389-28497408 MS.gene44959:CDS 55.0%
CTGAACCCAAAACCGCCGAA+AGG + chr8.1:28497295-28497314 None:intergenic 55.0%
GAAGATGGGCGTGAAGAAGG+AGG + chr8.1:28495001-28495020 None:intergenic 55.0%
GCAAGACATGCCGTCGTTAC+TGG - chr8.1:28495182-28495201 MS.gene44959:intron 55.0%
GTGGAAGATGGGCGTGAAGA+AGG + chr8.1:28495004-28495023 None:intergenic 55.0%
TTCCCATAGGAGGTGGCTGT+CGG - chr8.1:28495230-28495249 MS.gene44959:intron 55.0%
TTCCGACAGCCACCTCCTAT+GGG + chr8.1:28495235-28495254 None:intergenic 55.0%
TTTCCGACAGCCACCTCCTA+TGG + chr8.1:28495236-28495255 None:intergenic 55.0%
! CCTCTCCTTTCGGCGGTTTT+GGG - chr8.1:28497287-28497306 MS.gene44959:CDS 55.0%
! TAGTGGGTGGCATAGGGAAG+TGG - chr8.1:28496799-28496818 MS.gene44959:CDS 55.0%
! TGATGATGCGGTGGTGGTTG+TGG + chr8.1:28495065-28495084 None:intergenic 55.0%
!! GTGGTGGTGGTTGTGGAAGA+TGG + chr8.1:28495016-28495035 None:intergenic 55.0%
AAAGGAGAGGGAGTCACCGG+TGG + chr8.1:28497277-28497296 None:intergenic 60.0%
AGGTTCAACCTCCGCACCAC+CGG - chr8.1:28497258-28497277 MS.gene44959:CDS 60.0%
CCCAAAACCGCCGAAAGGAG+AGG + chr8.1:28497290-28497309 None:intergenic 60.0%
CCGAAAGGAGAGGGAGTCAC+CGG + chr8.1:28497280-28497299 None:intergenic 60.0%
CCGGTGACTCCCTCTCCTTT+CGG - chr8.1:28497277-28497296 MS.gene44959:CDS 60.0%
GTGACTCCCTCTCCTTTCGG+CGG - chr8.1:28497280-28497299 MS.gene44959:CDS 60.0%
GTGAGAGAGGGAGAGGGAGA+GGG + chr8.1:28496140-28496159 None:intergenic 60.0%
! ACTTGAGTGGTGGTGCGACG+AGG - chr8.1:28497238-28497257 MS.gene44959:CDS 60.0%
! CCCTCTCCTTTCGGCGGTTT+TGG - chr8.1:28497286-28497305 MS.gene44959:CDS 60.0%
! TGCGGTGGTGGTTGTGGTGA+CGG + chr8.1:28495059-28495078 None:intergenic 60.0%
!! GTGGTTGTGGTGACGGTGGT+TGG + chr8.1:28495052-28495071 None:intergenic 60.0%
ACTCCACAAACCCTCCGGCG+AGG + chr8.1:28497386-28497405 None:intergenic 65.0%
AGAGGGAGTCACCGGTGGTG+CGG + chr8.1:28497272-28497291 None:intergenic 65.0%
GGTGAGAGAGGGAGAGGGAG+AGG + chr8.1:28496141-28496160 None:intergenic 65.0%
! GACGGTGGTTGGTGCAGTGG+TGG + chr8.1:28495041-28495060 None:intergenic 65.0%
! GGTGACGGTGGTTGGTGCAG+TGG + chr8.1:28495044-28495063 None:intergenic 65.0%
! GGTGGTTGGTGCAGTGGTGG+TGG + chr8.1:28495038-28495057 None:intergenic 65.0%
!! GGTGGTGGTGGTGGTGGTTG+TGG + chr8.1:28495023-28495042 None:intergenic 65.0%
!! GGTGGTGGTTGTGGTGACGG+TGG + chr8.1:28495056-28495075 None:intergenic 65.0%
!! GGTTGGTGCAGTGGTGGTGG+TGG + chr8.1:28495035-28495054 None:intergenic 65.0%
!! TGCAGTGGTGGTGGTGGTGG+TGG + chr8.1:28495029-28495048 None:intergenic 65.0%
!! TGGTGCAGTGGTGGTGGTGG+TGG + chr8.1:28495032-28495051 None:intergenic 65.0%
CCACAAACCCTCCGGCGAGG+CGG + chr8.1:28497383-28497402 None:intergenic 70.0%
CCACCAACTGCGGAGCCCGA+CGG + chr8.1:28497429-28497448 None:intergenic 70.0%
CGTCGGGCTCCGCAGTTGGT+GGG - chr8.1:28497427-28497446 MS.gene44959:CDS 70.0%
ACTGCGGAGCCCGACGGAGG+CGG + chr8.1:28497423-28497442 None:intergenic 75.0%
CAAACCCTCCGGCGAGGCGG+AGG + chr8.1:28497380-28497399 None:intergenic 75.0%
CAGTGGTGCCTCCGCCTCGC+CGG - chr8.1:28497369-28497388 MS.gene44959:CDS 75.0%
CCAACTGCGGAGCCCGACGG+AGG + chr8.1:28497426-28497445 None:intergenic 75.0%
CCGACGCGGCCCACCAACTG+CGG + chr8.1:28497439-28497458 None:intergenic 75.0%
CCGCCTCGCCGGAGGGTTTG+TGG - chr8.1:28497380-28497399 MS.gene44959:CDS 75.0%
CCGTCGGGCTCCGCAGTTGG+TGG - chr8.1:28497426-28497445 MS.gene44959:CDS 75.0%
CCTCCGTCGGGCTCCGCAGT+TGG - chr8.1:28497423-28497442 MS.gene44959:CDS 75.0%
GGGAGTCACCGGTGGTGCGG+AGG + chr8.1:28497269-28497288 None:intergenic 75.0%
!! CCGCAGTTGGTGGGCCGCGT+CGG - chr8.1:28497436-28497455 MS.gene44959:CDS 75.0%
! GGTGCCTCCGCCTCGCCGGA+GGG - chr8.1:28497373-28497392 MS.gene44959:CDS 80.0%
! TGGTGCCTCCGCCTCGCCGG+AGG - chr8.1:28497372-28497391 MS.gene44959:CDS 80.0%
! GGAGCGGCGCCGCCTCCGTC+GGG - chr8.1:28497411-28497430 MS.gene44959:CDS 85.0%
! GGGAGCGGCGCCGCCTCCGT+CGG - chr8.1:28497410-28497429 MS.gene44959:CDS 85.0%
!! ACCCCCGCGACGCGCCGACG+CGG + chr8.1:28497453-28497472 None:intergenic 85.0%
!! TGGGCCGCGTCGGCGCGTCG+CGG - chr8.1:28497446-28497465 MS.gene44959:CDS 85.0%
!! GCCGCGTCGGCGCGTCGCGG+GGG - chr8.1:28497449-28497468 MS.gene44959:CDS 90.0%
!! GGCCGCGTCGGCGCGTCGCG+GGG - chr8.1:28497448-28497467 MS.gene44959:CDS 90.0%
!! GGGCCGCGTCGGCGCGTCGC+GGG - chr8.1:28497447-28497466 MS.gene44959:CDS 90.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 28494884 28497491 28494884 ID=MS.gene44959
chr8.1 mRNA 28494884 28497491 28494884 ID=MS.gene44959.t1;Parent=MS.gene44959
chr8.1 exon 28496459 28497491 28496459 ID=MS.gene44959.t1.exon1;Parent=MS.gene44959.t1
chr8.1 CDS 28496459 28497491 28496459 ID=cds.MS.gene44959.t1;Parent=MS.gene44959.t1
chr8.1 exon 28494884 28495140 28494884 ID=MS.gene44959.t1.exon2;Parent=MS.gene44959.t1
chr8.1 CDS 28494884 28495140 28494884 ID=cds.MS.gene44959.t1;Parent=MS.gene44959.t1
Gene Sequence

>MS.gene44959

ATGATCCAAGAACTCTTTGGTAATGGTGCTAGTGCTACCCTCACTTCAAGTGAAAGAAACTACTCTTCCATTAATGGAGGAGTTGGAGGAGTTTTACTTCAACCAACAACACAACCTCCTTCTTCACGCCCATCTTCCACAACCACCACCACCACCACCACTGCACCAACCACCGTCACCACAACCACCACCGCATCATCAGAAAACCAACCACATCTAAGGTGTCCAAGATGTGACTCATCAAACACAAAATTTTGTTACTACAACAACTACAACCTCACTCAGCCTCGCCATTTCTGCAAGACATGCCGTCGTTACTGGACAAAAGGAGGTGCTTTGAGGAACGTTCCCATAGGAGGTGGCTGTCGGAAAAACAAGAGTATCAACGCCTCAAATAGCGCGGCAAAAACAACTACAAACAAGATGAAAACAGTTTCTTCAGAGTTTAATGGAAGGTCAACAAGTGGTCAAGGGTTTGATCTCGAACACGTTGTTCCACCACAAAGTCAAATCCTCTGGGGTTCTCCTCAAAATTCTCATATACTTTCTTTGCTAAGATCTAGTCAAAACCAAAACCCTAACCCTAATCATGTTAAGGAAGAAGGCAATAACTTCATAGGGTCCCATGTTTCTCACATGATGAGTTCTCAGCCGTTGATTTCGTCAAATGGTTATGATGGTGTTGGGCATGTTTTATGCAACCCATTTTGGAGAAACAATCATGATAATCAAACTCAACAATTACAAAATGGTGGATTTGTACTTGGGGATCAACAACATCACCATCATCAAAACAGTGGAATCCAAGAACTGTACCAGAAACTAAGGTCATCAACAACATCATCATCATCAGGTAATAATTATTGCAGTGAGATTTCATCTTCACCAACACCAACAGTGTTACTAGGGAACGTGGCTTCAAACTCTTCCTCTATATCCAACATTTTGGAGACAACTTCAGTTACTGGTGGTGAATTAGGGTACTGGAATCCAATTCCAACACTAACTTGGTCTGATCTTCCAACTACCAATGGTGCAATTCAAACCCAATATCAGTAATAAGTATAACTACGTGTTCTTTTTCTTTTGTTGACCGGTCAAATCTTCGTTTACCATTACATAGTAGCATAGGTTTTGCTCCTTAATTTCTATCTTAGAGTTTGTATTTTTTTTTTTTTTTTATTGTGTGTTTGGTTTTGGTTTGGGTGGTATATGAATATGGATCTAGTACTAGTTTTTTTTCTTTTCATTTTCCCTCTCCCTCTCCCTCTCTCACCTTCTATCATTTAGTTCTTTTTGTGTAACTTAGTTAATGGTGTGCTCGGATAAGTTATTAATTTGAAGACCATAGAGTTTAAAATTGTATTATGTATAACGTAGTCTATTTTGAATTCTTGTTATTAGGTGCTAAGTTTCTTAATTTTATGTTTGTCTAGCTTTTTTTTTACTTTCTTTTTTTGTTATTTTTTTTTTTAGCTTAAGTCCCAGATTATTTCAAACGCCTAACAAATAATTATATATTGTTCTAACTCTAACTAAAGCATATGTTAGAGGTTTTGGTTCTCTTCAAAGAAGATATATATGATGTATTTGATATCATACAACATAAAAGGAAGAGATTAAAAGAAATAATTAATTAGTTTAATTTGATCATATGGAAAAACATATTAAACCCTAAAGTTTTGAGTGGACCAAAGAAGTGTATCCCACACCAGCTTTACTCTTTCTTTTATAAAGTAATCTAGTATTTGTATGGGTAATCTTGTGGTATGTAATTATGTATGGGTTGAGACAATGAAGAAATATTATGCTGGAGTATTCTCTTTCATTTATTTTACTTTCCAATAATCTCTTCTCTTTCTATATCTTTTTTCGATCAACACTATACTAGAGTCTGACATGGAGTTGGTGATTCTAGTGGGTGGCATAGGGAAGTGGAAGATTTTGTTTTTTAACGAGAAATCGAGGAACCTAATGCAAAACCAGTCTTTTGAAAGAGTTTCCTCAAACGGCATTGCAGAATATTCTTGCTGTTTCCAATTCCTAGTGAAGAGAAAGAATCCACTTTCACTGAACTTACGCTCTGCTGATACTTGTCTTTCTCCGCTATGTTGTCCCATTAAATTGAAATTAGAGAAATGATATTTGTACGATGACACGACTCTCTCGTACTCTCGCTCTTACTCTCTTTCTCTTTTTGTTTTTGTCTCTAAAGAAGAAGGAAGAAACATGTTGTCCTAAAATGTGTCACAAAATAATAAAAACCTCTCCCTAGAATTTTCTCTCTGACCTCTCTCTAAACACTACACGCGCCTTCCTCCTCATATCCAAACTTTTCTTTTCTGATGTAGTGTACTTGAGTGGTGGTGCGACGAGGTTCAACCTCCGCACCACCGGTGACTCCCTCTCCTTTCGGCGGTTTTGGGTTCAGATCTACCACCGGTGTATCTCTGTTCTGGTGTTCTTCCAGTATGAGAGAGCTAGGCAGTGGTGCCTCCGCCTCGCCGGAGGGTTTGTGGAGTTACAGGGAGCGGCGCCGCCTCCGTCGGGCTCCGCAGTTGGTGGGCCGCGTCGGCGCGTCGCGGGGGTTTTGTCTTCCCTCCTTTAA
Protein sequence

>MS.gene44959.t1

MIQELFGNGASATLTSSERNYSSINGGVGGVLLQPTTQPPSSRPSSTTTTTTTTAPTTVTTTTTASSENQPHLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKSINASNSAAKTTTNKMKTVSSEFNGRSTSGQGFDLEHVVPPQSQILWGSPQNSHILSLLRSSQNQNPNPNHVKEEGNNFIGSHVSHMMSSQPLISSNGYDGVGHVLCNPFWRNNHDNQTQQLQNGGFVLGDQQHHHHQNSGIQELYQKLRSSTTSSSSGNNYCSEISSSPTPTVLLGNVASNSSSISNILETTSVTGGELGYWNPIPTLTWSDLPTTNVYLSGGATRFNLRTTGDSLSFRRFWVQIYHRCISVLVFFQYERARQWCLRLAGGFVELQGAAPPPSGSAVGGPRRRVAGVLSSLL