AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene44965

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene44965.t1 MTR_8g079060 86.777 242 19 5 1 242 1 229 3.26e-122 347
MS.gene44965.t1 MTR_8g015840 74.286 70 17 1 17 85 7 76 5.58e-32 117
MS.gene44965.t1 MTR_4g063780 54.717 106 35 3 17 109 54 159 1.01e-30 116
MS.gene44965.t1 MTR_2g096740 64.000 75 27 0 22 96 55 129 1.04e-30 115
MS.gene44965.t1 MTR_2g096740 64.000 75 27 0 22 96 70 144 1.28e-30 115
MS.gene44965.t1 MTR_8g027295 41.844 141 80 1 23 163 18 156 2.27e-30 114
MS.gene44965.t1 MTR_2g093220 42.515 167 89 3 12 174 24 187 5.29e-30 113
MS.gene44965.t1 MTR_4g088580 61.842 76 29 0 31 106 57 132 6.14e-30 115
MS.gene44965.t1 MTR_4g022370 41.304 184 85 6 17 190 61 231 2.00e-29 113
MS.gene44965.t1 MTR_4g461080 61.728 81 23 1 1 81 9 81 4.15e-29 110
MS.gene44965.t1 MTR_8g479350 58.228 79 33 0 26 104 65 143 5.34e-29 112
MS.gene44965.t1 MTR_7g059400 44.156 154 53 4 17 142 55 203 8.84e-29 111
MS.gene44965.t1 MTR_7g024670 73.770 61 16 0 31 91 79 139 3.74e-28 110
MS.gene44965.t1 MTR_1g077600 62.857 70 26 0 14 83 28 97 5.43e-28 108
MS.gene44965.t1 MTR_1g077600 49.495 99 48 1 14 110 28 126 5.81e-28 107
MS.gene44965.t1 MTR_3g091820 70.588 68 18 2 18 85 33 98 9.80e-28 107
MS.gene44965.t1 MTR_4g089095 75.000 60 14 1 27 86 48 106 3.02e-27 106
MS.gene44965.t1 MTR_3g435480 34.737 190 103 4 29 211 136 311 3.28e-27 108
MS.gene44965.t1 MTR_4g089095 78.947 57 11 1 27 83 14 69 4.32e-27 105
MS.gene44965.t1 MTR_5g031440 71.429 56 16 0 24 79 38 93 1.28e-26 105
MS.gene44965.t1 MTR_8g068210 54.321 81 34 1 29 109 32 109 1.45e-26 105
MS.gene44965.t1 MTR_2g013370 75.439 57 13 1 27 83 44 99 3.02e-26 103
MS.gene44965.t1 MTR_2g014170 83.673 49 8 0 29 77 45 93 6.09e-26 103
MS.gene44965.t1 MTR_4g109980 79.245 53 11 0 27 79 38 90 6.37e-26 103
MS.gene44965.t1 MTR_3g077750 70.312 64 15 1 16 79 52 111 6.70e-26 103
MS.gene44965.t1 MTR_7g010950 38.065 155 71 4 29 178 135 269 7.29e-26 105
MS.gene44965.t1 MTR_2g014060 61.972 71 23 1 10 80 10 76 8.66e-26 103
MS.gene44965.t1 MTR_3g090430 47.748 111 45 2 2 112 34 131 4.73e-25 101
MS.gene44965.t1 MTR_4g082060 63.934 61 22 0 29 89 122 182 5.15e-25 102
MS.gene44965.t1 MTR_6g012450 37.662 154 76 4 29 176 136 275 5.37e-25 102
MS.gene44965.t1 MTR_2g059540 81.633 49 9 0 29 77 31 79 5.68e-25 98.2
MS.gene44965.t1 MTR_2g016030 67.273 55 18 0 26 80 44 98 1.53e-24 95.9
MS.gene44965.t1 MTR_8g044220 62.500 64 23 1 29 92 118 180 3.42e-24 100
MS.gene44965.t1 MTR_5g041420 63.934 61 22 0 21 81 130 190 3.86e-24 98.6
MS.gene44965.t1 MTR_1g056810 51.163 86 36 2 31 110 14 99 4.18e-24 97.8
MS.gene44965.t1 MTR_7g086780 39.655 116 63 2 31 139 101 216 5.73e-24 99.4
MS.gene44965.t1 MTR_6g027460 39.695 131 73 3 29 156 96 223 1.22e-23 97.8
MS.gene44965.t1 MTR_5g041380 73.585 53 14 0 29 81 127 179 4.23e-23 96.7
MS.gene44965.t1 MTR_5g041400 73.585 53 14 0 29 81 119 171 5.09e-23 96.3
MS.gene44965.t1 MTR_6g027450 56.716 67 28 1 29 94 89 155 9.38e-23 95.1
MS.gene44965.t1 MTR_5g041530 62.295 61 23 0 21 81 132 192 1.89e-22 94.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene44965.t1 AT3G50410 48.289 263 105 9 1 242 1 253 1.64e-58 186
MS.gene44965.t1 AT5G66940 46.186 236 94 9 4 223 3 221 8.15e-50 163
MS.gene44965.t1 AT1G51700 47.561 164 53 6 24 171 28 174 1.98e-35 125
MS.gene44965.t1 AT3G21270 43.293 164 76 5 29 184 29 183 1.01e-32 118
MS.gene44965.t1 AT5G60850 66.265 83 25 2 27 109 49 128 9.79e-32 118
MS.gene44965.t1 AT5G60200 63.636 88 24 2 22 109 48 127 7.45e-31 115
MS.gene44965.t1 AT3G45610 52.294 109 43 2 2 110 13 112 1.00e-30 114
MS.gene44965.t1 AT1G47655 39.496 238 101 9 11 242 9 209 1.45e-30 113
MS.gene44965.t1 AT3G55370 63.514 74 25 2 21 93 114 186 2.12e-28 110
MS.gene44965.t1 AT1G07640 74.138 58 15 0 29 86 21 78 2.13e-28 108
MS.gene44965.t1 AT3G55370 63.514 74 25 2 21 93 69 141 2.94e-28 109
MS.gene44965.t1 AT5G65590 72.131 61 17 0 23 83 35 95 3.01e-28 109
MS.gene44965.t1 AT3G55370 63.514 74 25 2 21 93 69 141 3.40e-28 110
MS.gene44965.t1 AT1G07640 74.138 58 15 0 29 86 77 134 3.97e-28 109
MS.gene44965.t1 AT1G07640 74.138 58 15 0 29 86 85 142 5.11e-28 109
MS.gene44965.t1 AT1G28310 75.862 58 14 0 29 86 27 84 6.26e-28 108
MS.gene44965.t1 AT5G62430 63.158 76 27 1 29 103 54 129 8.34e-28 108
MS.gene44965.t1 AT1G28310 75.862 58 14 0 29 86 51 108 8.64e-28 108
MS.gene44965.t1 AT4G38000 44.615 130 66 3 10 133 19 148 1.85e-27 105
MS.gene44965.t1 AT5G39660 56.098 82 34 1 29 108 138 219 2.86e-27 108
MS.gene44965.t1 AT5G39660 56.098 82 34 1 29 108 138 219 2.86e-27 108
MS.gene44965.t1 AT5G39660 56.098 82 34 1 29 108 138 219 2.86e-27 108
MS.gene44965.t1 AT3G61850 70.769 65 18 1 23 87 56 119 2.94e-27 106
MS.gene44965.t1 AT3G61850 70.769 65 18 1 23 87 56 119 2.94e-27 106
MS.gene44965.t1 AT4G24060 52.083 96 43 2 18 111 43 137 3.81e-27 107
MS.gene44965.t1 AT5G02460 63.636 77 17 2 17 83 74 149 3.91e-27 107
MS.gene44965.t1 AT3G47500 40.741 135 64 3 1 121 84 216 3.95e-27 108
MS.gene44965.t1 AT3G61850 70.769 65 18 1 23 87 68 131 4.00e-27 106
MS.gene44965.t1 AT3G61850 70.769 65 18 1 23 87 56 119 5.20e-27 106
MS.gene44965.t1 AT3G61850 70.769 65 18 1 23 87 68 131 5.78e-27 106
MS.gene44965.t1 AT2G28810 73.684 57 15 0 24 80 72 128 8.09e-27 105
MS.gene44965.t1 AT2G28810 73.684 57 15 0 24 80 89 145 1.10e-26 105
MS.gene44965.t1 AT2G28510 38.922 167 66 4 31 162 50 215 2.77e-26 103
MS.gene44965.t1 AT2G37590 59.722 72 29 0 12 83 72 143 4.34e-26 103
MS.gene44965.t1 AT4G21050 64.179 67 23 1 31 97 26 91 1.52e-25 100
MS.gene44965.t1 AT1G21340 64.706 68 21 1 25 89 31 98 2.03e-25 100
MS.gene44965.t1 AT4G00940 70.690 58 17 0 26 83 65 122 4.13e-25 100
MS.gene44965.t1 AT4G00940 70.690 58 17 0 26 83 65 122 4.13e-25 100
MS.gene44965.t1 AT4G00940 70.690 58 17 0 26 83 65 122 4.13e-25 100
MS.gene44965.t1 AT3G52440 63.636 66 24 0 18 83 14 79 1.13e-24 98.6
MS.gene44965.t1 AT5G62940 67.188 64 17 1 16 79 64 123 1.13e-24 100
MS.gene44965.t1 AT1G26790 60.000 70 27 1 29 97 111 180 1.32e-24 100
MS.gene44965.t1 AT3G52440 63.636 66 24 0 18 83 33 98 1.49e-24 98.6
MS.gene44965.t1 AT2G46590 74.074 54 14 0 23 76 62 115 1.64e-24 100
MS.gene44965.t1 AT2G46590 74.074 54 14 0 23 76 74 127 1.91e-24 100
MS.gene44965.t1 AT1G29160 45.000 100 55 0 29 128 62 161 2.85e-24 95.5
MS.gene44965.t1 AT4G21040 62.687 67 23 1 31 97 27 91 6.04e-24 96.3
MS.gene44965.t1 AT1G69570 69.811 53 16 0 29 81 132 184 6.05e-24 99.4
MS.gene44965.t1 AT4G21080 64.179 67 22 1 31 97 27 91 2.00e-23 95.5
MS.gene44965.t1 AT1G64620 60.811 74 20 2 14 78 25 98 3.61e-23 96.7
MS.gene44965.t1 AT2G34140 67.925 53 17 0 29 81 58 110 6.54e-23 92.0
MS.gene44965.t1 AT4G21030 60.000 50 20 0 31 80 23 72 1.88e-13 67.4

Find 88 sgRNAs with CRISPR-Local

Find 99 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACCAAAACTCTGGGTTTC+TGG 0.121250 8.1:+28595122 MS.gene44965:CDS
TTCTGGCATTAGGTGGATTT+GGG 0.223026 8.1:+28595139 MS.gene44965:CDS
GGTGTTCCTGTTGTGTCTTC+TGG 0.239637 8.1:+28595252 MS.gene44965:CDS
TTTCTGGCATTAGGTGGATT+TGG 0.249923 8.1:+28595138 MS.gene44965:CDS
CATTAGGTGGATTTGGGCTT+GGG 0.256673 8.1:+28595145 MS.gene44965:CDS
CCGTCAATACCGCCTGAAAA+TGG 0.278944 8.1:-28595039 None:intergenic
TCCTCCTTGGACGGCGGAGA+TGG 0.289163 8.1:-28595007 None:intergenic
GCAATTTCAACACCAGTAAA+TGG 0.290502 8.1:+28595357 MS.gene44965:CDS
GCATTAGGTGGATTTGGGCT+TGG 0.292718 8.1:+28595144 MS.gene44965:CDS
AAGAAATGGGGTTTGGGATT+GGG 0.292786 8.1:+28595184 MS.gene44965:CDS
GGTGGATTTGGGCTTGGGCT+TGG 0.292816 8.1:+28595150 MS.gene44965:CDS
TTTGGGCTTGGGCTTGGACA+TGG 0.300293 8.1:+28595156 MS.gene44965:CDS
GGCTTGAAGAAATGGGGTTT+GGG 0.336934 8.1:+28595178 MS.gene44965:CDS
GCAAAGCTTGTCGCCGCTAC+TGG 0.340843 8.1:+28594827 MS.gene44965:CDS
TTGGGCTTGGGCTTGGACAT+GGG 0.342240 8.1:+28595157 MS.gene44965:CDS
TTTGATCCATCCACCATTCC+TGG 0.347481 8.1:-28595225 None:intergenic
TGCTCCGGTGCCGGTGCACC+GGG 0.353622 8.1:-28594715 None:intergenic
TGGACATGGGCTTGAAGAAA+TGG 0.356070 8.1:+28595170 MS.gene44965:CDS
TGGGATTGGGAGAACAGGTT+GGG 0.360351 8.1:+28595197 MS.gene44965:CDS
GAAGAAATGGGGTTTGGGAT+TGG 0.362617 8.1:+28595183 MS.gene44965:CDS
GGGCTTGAAGAAATGGGGTT+TGG 0.364511 8.1:+28595177 MS.gene44965:CDS
GGTGATTGTTTCTCTTGGCC+TGG 0.369523 8.1:+28595330 MS.gene44965:CDS
TTGCTCCGGTGCCGGTGCAC+CGG 0.375742 8.1:-28594716 None:intergenic
ATGCCAGAAACCCAGAGTTT+TGG 0.380007 8.1:-28595125 None:intergenic
GTTCATTTGAGACCATTTAC+TGG 0.380286 8.1:-28595369 None:intergenic
GTGGTGGTGATTGTTTCTCT+TGG 0.384765 8.1:+28595325 MS.gene44965:CDS
GGGTTTGGGATTGGGAGAAC+AGG 0.387438 8.1:+28595192 MS.gene44965:CDS
CCTCCTTGGACGGCGGAGAT+GGG 0.390226 8.1:-28595006 None:intergenic
TGTTGATCGGCGGCTTTCAC+CGG 0.408674 8.1:-28594677 None:intergenic
GGACATGGGCTTGAAGAAAT+GGG 0.420023 8.1:+28595171 MS.gene44965:CDS
AACTCTGGGTTTCTGGCATT+AGG 0.420912 8.1:+28595129 MS.gene44965:CDS
TGCCGTGACTTCAGCGGCGC+CGG 0.425658 8.1:+28594957 MS.gene44965:CDS
TCGCCCCGGTGCACCGGCAC+CGG 0.436556 8.1:+28594711 MS.gene44965:CDS
AGATTCTCTTGCTCCGGTGC+CGG 0.436640 8.1:-28594724 None:intergenic
ATCTCCGCCGTCCAAGGAGG+AGG 0.437854 8.1:+28595009 MS.gene44965:CDS
GGTGCACCGGGGCGAATTTG+AGG 0.440626 8.1:-28594703 None:intergenic
GTTGTGTCTTCTGGTGTTGT+CGG 0.442859 8.1:+28595261 MS.gene44965:CDS
TTGGGATTGGGAGAACAGGT+TGG 0.448496 8.1:+28595196 MS.gene44965:CDS
ATGCTGAGTACGAGAGCGTT+TGG 0.449036 8.1:-28594905 None:intergenic
AACAACAACAACCAAAACTC+TGG 0.449319 8.1:+28595114 MS.gene44965:CDS
ATGGAAAAGACCCTCCTCCT+TGG 0.474800 8.1:-28595020 None:intergenic
CTCCGGCGCCGCTGAAGTCA+CGG 0.478425 8.1:-28594959 None:intergenic
GGAAACACGTGGCAGTTAGA+AGG 0.479041 8.1:+28595282 MS.gene44965:CDS
TTTCTGGTACCACCGCCGAC+GGG 0.484650 8.1:-28594877 None:intergenic
AAACAGAATATGAGTGTTTG+TGG 0.490258 8.1:+28595069 MS.gene44965:CDS
CGTGACATCCCCGTCGGCGG+TGG 0.490474 8.1:+28594868 MS.gene44965:CDS
CATGGGAGATTCTCTTGCTC+CGG 0.492080 8.1:-28594730 None:intergenic
CAGTTAGAAGGTGGTGAAGG+TGG 0.495978 8.1:+28595294 MS.gene44965:CDS
TACCTAAACAATGACATCTT+CGG 0.496862 8.1:+28594651 None:intergenic
TCAAATTCGCCCCGGTGCAC+CGG 0.515212 8.1:+28594705 MS.gene44965:CDS
CGCCGCTGAAGTCACGGCAG+AGG 0.520050 8.1:-28594953 None:intergenic
ACAACACCAGAAGACACAAC+AGG 0.522545 8.1:-28595258 None:intergenic
GCTTGATAGTGGTGGTGCTC+CGG 0.532605 8.1:-28594976 None:intergenic
GTTGAGTCACAACGTGGACA+TGG 0.533694 8.1:-28594748 None:intergenic
TCTGGGTTTCTGGCATTAGG+TGG 0.547157 8.1:+28595132 MS.gene44965:CDS
TCAGGCGGTATTGACGGTGA+TGG 0.551465 8.1:+28595045 MS.gene44965:CDS
CACCGCCGACGGGGATGTCA+CGG 0.552285 8.1:-28594867 None:intergenic
CACGGCAGAGGAAGAAGATG+AGG 0.555442 8.1:-28594941 None:intergenic
ACACCCATCTCCGCCGTCCA+AGG 0.561242 8.1:+28595003 MS.gene44965:CDS
GGTGTTGAAATTGCAAGTCC+AGG 0.570412 8.1:-28595348 None:intergenic
TTCTGGTACCACCGCCGACG+GGG 0.573655 8.1:-28594876 None:intergenic
ACAACAACAACCAAAACTCT+GGG 0.579844 8.1:+28595115 MS.gene44965:CDS
TCTCCGCCGTCCAAGGAGGA+GGG 0.582119 8.1:+28595010 MS.gene44965:CDS
ACAATGACATCTTCGGACTC+CGG 0.583202 8.1:+28594658 None:intergenic
GACATGGGCTTGAAGAAATG+GGG 0.585645 8.1:+28595172 MS.gene44965:CDS
TGGGTGTCATTGCTTGATAG+TGG 0.598785 8.1:-28594987 None:intergenic
TTGAGTCACAACGTGGACAT+GGG 0.610280 8.1:-28594747 None:intergenic
AGACCCTCCTCCTTGGACGG+CGG 0.612466 8.1:-28595013 None:intergenic
CTCCGTGACATCCCCGTCGG+CGG 0.612747 8.1:+28594865 MS.gene44965:CDS
TTCCTCTGCCGTGACTTCAG+CGG 0.618657 8.1:+28594951 MS.gene44965:CDS
TGTCGCCGCTACTGGACTCA+CGG 0.619346 8.1:+28594835 MS.gene44965:CDS
ACAAAACCTCAAATTCGCCC+CGG 0.621584 8.1:+28594697 MS.gene44965:CDS
TGGCAGTTAGAAGGTGGTGA+AGG 0.635231 8.1:+28595291 MS.gene44965:CDS
CAAGCTTTGCAGAAATGACG+TGG 0.636873 8.1:-28594814 None:intergenic
ACCCTCCGTGACATCCCCGT+CGG 0.638321 8.1:+28594862 MS.gene44965:CDS
GTTGTTGTAGTAACAAAACT+TGG 0.639457 8.1:-28594776 None:intergenic
AAAAGACCCTCCTCCTTGGA+CGG 0.641146 8.1:-28595016 None:intergenic
GTGTCATTGCTTGATAGTGG+TGG 0.649877 8.1:-28594984 None:intergenic
CCCATCTCCGCCGTCCAAGG+AGG 0.650434 8.1:+28595006 MS.gene44965:CDS
TACCACCGTGAGTCCAGTAG+CGG 0.656577 8.1:-28594840 None:intergenic
GCTCCGGTGCCGGTGCACCG+GGG 0.657998 8.1:-28594714 None:intergenic
GCCGACGGGGATGTCACGGA+GGG 0.667751 8.1:-28594863 None:intergenic
AACACGTGGCAGTTAGAAGG+TGG 0.673819 8.1:+28595285 MS.gene44965:CDS
CGCCGACGGGGATGTCACGG+AGG 0.674019 8.1:-28594864 None:intergenic
CTGGTGTTGTCGGAAACACG+TGG 0.684127 8.1:+28595271 MS.gene44965:CDS
ATGGTGGATGGATCAAACAT+TGG 0.699118 8.1:+28595231 MS.gene44965:CDS
GTGTTTGTTGAGTCACAACG+TGG 0.725459 8.1:-28594754 None:intergenic
CGCCGCTACTGGACTCACGG+TGG 0.745530 8.1:+28594838 MS.gene44965:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
AAACAGAATATGAGTGTTTG+TGG + chr8.1:28595069-28595088 MS.gene44965:CDS 30.0%
GTTGTTGTAGTAACAAAACT+TGG - chr8.1:28594779-28594798 None:intergenic 30.0%
!!! GAATTTGAGGTTTTGTTGAT+CGG - chr8.1:28594693-28594712 None:intergenic 30.0%
AACAACAACAACCAAAACTC+TGG + chr8.1:28595114-28595133 MS.gene44965:CDS 35.0%
ACAACAACAACCAAAACTCT+GGG + chr8.1:28595115-28595134 MS.gene44965:CDS 35.0%
GCAATTTCAACACCAGTAAA+TGG + chr8.1:28595357-28595376 MS.gene44965:CDS 35.0%
! AAGAAATGGGGTTTGGGATT+GGG + chr8.1:28595184-28595203 MS.gene44965:CDS 40.0%
! TTCTGGCATTAGGTGGATTT+GGG + chr8.1:28595139-28595158 MS.gene44965:CDS 40.0%
! TTTCTGGCATTAGGTGGATT+TGG + chr8.1:28595138-28595157 MS.gene44965:CDS 40.0%
!! ATGGTGGATGGATCAAACAT+TGG + chr8.1:28595231-28595250 MS.gene44965:CDS 40.0%
!!! TTTGAGGTTTTGTTGATCGG+CGG - chr8.1:28594690-28594709 None:intergenic 40.0%
ACAAAACCTCAAATTCGCCC+CGG + chr8.1:28594697-28594716 MS.gene44965:CDS 45.0%
ACAACACCAGAAGACACAAC+AGG - chr8.1:28595261-28595280 None:intergenic 45.0%
CAACCAAAACTCTGGGTTTC+TGG + chr8.1:28595122-28595141 MS.gene44965:CDS 45.0%
CAAGCTTTGCAGAAATGACG+TGG - chr8.1:28594817-28594836 None:intergenic 45.0%
GACATGGGCTTGAAGAAATG+GGG + chr8.1:28595172-28595191 MS.gene44965:CDS 45.0%
GGACATGGGCTTGAAGAAAT+GGG + chr8.1:28595171-28595190 MS.gene44965:CDS 45.0%
GGCTTGAAGAAATGGGGTTT+GGG + chr8.1:28595178-28595197 MS.gene44965:CDS 45.0%
TGGACATGGGCTTGAAGAAA+TGG + chr8.1:28595170-28595189 MS.gene44965:CDS 45.0%
TTGAGTCACAACGTGGACAT+GGG - chr8.1:28594750-28594769 None:intergenic 45.0%
TTTGATCCATCCACCATTCC+TGG - chr8.1:28595228-28595247 None:intergenic 45.0%
! ATGCCAGAAACCCAGAGTTT+TGG - chr8.1:28595128-28595147 None:intergenic 45.0%
! CATTAGGTGGATTTGGGCTT+GGG + chr8.1:28595145-28595164 MS.gene44965:CDS 45.0%
! GAAGAAATGGGGTTTGGGAT+TGG + chr8.1:28595183-28595202 MS.gene44965:CDS 45.0%
! GGAGGGTCTTTTCCATTTTC+AGG + chr8.1:28595027-28595046 MS.gene44965:CDS 45.0%
! GGTGTTGAAATTGCAAGTCC+AGG - chr8.1:28595351-28595370 None:intergenic 45.0%
! GTGGTGGTGATTGTTTCTCT+TGG + chr8.1:28595325-28595344 MS.gene44965:CDS 45.0%
! GTGTTTGTTGAGTCACAACG+TGG - chr8.1:28594757-28594776 None:intergenic 45.0%
!! AACTCTGGGTTTCTGGCATT+AGG + chr8.1:28595129-28595148 MS.gene44965:CDS 45.0%
!! CCATTTTCAGGCGGTATTGA+CGG + chr8.1:28595039-28595058 MS.gene44965:CDS 45.0%
!! GGGTCTTTTCCATTTTCAGG+CGG + chr8.1:28595030-28595049 MS.gene44965:CDS 45.0%
!! GTGTCATTGCTTGATAGTGG+TGG - chr8.1:28594987-28595006 None:intergenic 45.0%
!! GTTGTGTCTTCTGGTGTTGT+CGG + chr8.1:28595261-28595280 MS.gene44965:CDS 45.0%
!! TGGGTGTCATTGCTTGATAG+TGG - chr8.1:28594990-28595009 None:intergenic 45.0%
!!! AGAGCGTTTGGCGTTTTTTC+TGG - chr8.1:28594896-28594915 None:intergenic 45.0%
AAAAGACCCTCCTCCTTGGA+CGG - chr8.1:28595019-28595038 None:intergenic 50.0%
AACACGTGGCAGTTAGAAGG+TGG + chr8.1:28595285-28595304 MS.gene44965:CDS 50.0%
ATGGAAAAGACCCTCCTCCT+TGG - chr8.1:28595023-28595042 None:intergenic 50.0%
CAGTTAGAAGGTGGTGAAGG+TGG + chr8.1:28595294-28595313 MS.gene44965:CDS 50.0%
CATGGGAGATTCTCTTGCTC+CGG - chr8.1:28594733-28594752 None:intergenic 50.0%
CCGTCAATACCGCCTGAAAA+TGG - chr8.1:28595042-28595061 None:intergenic 50.0%
GGAAACACGTGGCAGTTAGA+AGG + chr8.1:28595282-28595301 MS.gene44965:CDS 50.0%
GGGCTTGAAGAAATGGGGTT+TGG + chr8.1:28595177-28595196 MS.gene44965:CDS 50.0%
GGTGTTCCTGTTGTGTCTTC+TGG + chr8.1:28595252-28595271 MS.gene44965:CDS 50.0%
GTTGAGTCACAACGTGGACA+TGG - chr8.1:28594751-28594770 None:intergenic 50.0%
TGGCAGTTAGAAGGTGGTGA+AGG + chr8.1:28595291-28595310 MS.gene44965:CDS 50.0%
TGGGATTGGGAGAACAGGTT+GGG + chr8.1:28595197-28595216 MS.gene44965:CDS 50.0%
TTGGGATTGGGAGAACAGGT+TGG + chr8.1:28595196-28595215 MS.gene44965:CDS 50.0%
! AGGTTGGGCTTTTCCAGGAA+TGG + chr8.1:28595212-28595231 MS.gene44965:CDS 50.0%
! GCATTAGGTGGATTTGGGCT+TGG + chr8.1:28595144-28595163 MS.gene44965:CDS 50.0%
! GGTGATTGTTTCTCTTGGCC+TGG + chr8.1:28595330-28595349 MS.gene44965:CDS 50.0%
! TTGGGCTTTTCCAGGAATGG+TGG + chr8.1:28595215-28595234 MS.gene44965:CDS 50.0%
!! AGAACAGGTTGGGCTTTTCC+AGG + chr8.1:28595207-28595226 MS.gene44965:CDS 50.0%
!! ATGCTGAGTACGAGAGCGTT+TGG - chr8.1:28594908-28594927 None:intergenic 50.0%
!! GCTTTTCCAGGAATGGTGGA+TGG + chr8.1:28595219-28595238 MS.gene44965:CDS 50.0%
!! TCTGGGTTTCTGGCATTAGG+TGG + chr8.1:28595132-28595151 MS.gene44965:CDS 50.0%
!!! GAAGGTGGTTTTGTTGGTGG+TGG + chr8.1:28595309-28595328 MS.gene44965:CDS 50.0%
!!! GGTGAAGGTGGTTTTGTTGG+TGG + chr8.1:28595306-28595325 MS.gene44965:CDS 50.0%
!!! GGTGGTGAAGGTGGTTTTGT+TGG + chr8.1:28595303-28595322 MS.gene44965:CDS 50.0%
AGATTCTCTTGCTCCGGTGC+CGG - chr8.1:28594727-28594746 None:intergenic 55.0%
CACGGCAGAGGAAGAAGATG+AGG - chr8.1:28594944-28594963 None:intergenic 55.0%
TACCACCGTGAGTCCAGTAG+CGG - chr8.1:28594843-28594862 None:intergenic 55.0%
TGTTGATCGGCGGCTTTCAC+CGG - chr8.1:28594680-28594699 None:intergenic 55.0%
TTCCTCTGCCGTGACTTCAG+CGG + chr8.1:28594951-28594970 MS.gene44965:CDS 55.0%
TTGGGCTTGGGCTTGGACAT+GGG + chr8.1:28595157-28595176 MS.gene44965:CDS 55.0%
TTTGGGCTTGGGCTTGGACA+TGG + chr8.1:28595156-28595175 MS.gene44965:CDS 55.0%
! GGGTTTGGGATTGGGAGAAC+AGG + chr8.1:28595192-28595211 MS.gene44965:CDS 55.0%
!! CTGGTGTTGTCGGAAACACG+TGG + chr8.1:28595271-28595290 MS.gene44965:CDS 55.0%
!! GCTTGATAGTGGTGGTGCTC+CGG - chr8.1:28594979-28594998 None:intergenic 55.0%
!! TCAGGCGGTATTGACGGTGA+TGG + chr8.1:28595045-28595064 MS.gene44965:CDS 55.0%
!! TTTTCTGGTACCACCGCCGA+CGG - chr8.1:28594881-28594900 None:intergenic 55.0%
GCAAAGCTTGTCGCCGCTAC+TGG + chr8.1:28594827-28594846 MS.gene44965:CDS 60.0%
TCAAATTCGCCCCGGTGCAC+CGG + chr8.1:28594705-28594724 MS.gene44965:CDS 60.0%
TGTCGCCGCTACTGGACTCA+CGG + chr8.1:28594835-28594854 MS.gene44965:CDS 60.0%
! GGTGGATTTGGGCTTGGGCT+TGG + chr8.1:28595150-28595169 MS.gene44965:CDS 60.0%
! TTTCTGGTACCACCGCCGAC+GGG - chr8.1:28594880-28594899 None:intergenic 60.0%
ACACCCATCTCCGCCGTCCA+AGG + chr8.1:28595003-28595022 MS.gene44965:CDS 65.0%
ACCCTCCGTGACATCCCCGT+CGG + chr8.1:28594862-28594881 MS.gene44965:CDS 65.0%
AGACCCTCCTCCTTGGACGG+CGG - chr8.1:28595016-28595035 None:intergenic 65.0%
ATCTCCGCCGTCCAAGGAGG+AGG + chr8.1:28595009-28595028 MS.gene44965:CDS 65.0%
CCTCCTTGGACGGCGGAGAT+GGG - chr8.1:28595009-28595028 None:intergenic 65.0%
GGTGCACCGGGGCGAATTTG+AGG - chr8.1:28594706-28594725 None:intergenic 65.0%
TCCTCCTTGGACGGCGGAGA+TGG - chr8.1:28595010-28595029 None:intergenic 65.0%
TCTCCGCCGTCCAAGGAGGA+GGG + chr8.1:28595010-28595029 MS.gene44965:CDS 65.0%
TTCTGGTACCACCGCCGACG+GGG - chr8.1:28594879-28594898 None:intergenic 65.0%
CACCGCCGACGGGGATGTCA+CGG - chr8.1:28594870-28594889 None:intergenic 70.0%
CCCATCTCCGCCGTCCAAGG+AGG + chr8.1:28595006-28595025 MS.gene44965:CDS 70.0%
CGCCGCTACTGGACTCACGG+TGG + chr8.1:28594838-28594857 MS.gene44965:CDS 70.0%
CGCCGCTGAAGTCACGGCAG+AGG - chr8.1:28594956-28594975 None:intergenic 70.0%
CTCCGGCGCCGCTGAAGTCA+CGG - chr8.1:28594962-28594981 None:intergenic 70.0%
CTCCGTGACATCCCCGTCGG+CGG + chr8.1:28594865-28594884 MS.gene44965:CDS 70.0%
GCCGACGGGGATGTCACGGA+GGG - chr8.1:28594866-28594885 None:intergenic 70.0%
TGCCGTGACTTCAGCGGCGC+CGG + chr8.1:28594957-28594976 MS.gene44965:CDS 70.0%
!! TTGCTCCGGTGCCGGTGCAC+CGG - chr8.1:28594719-28594738 None:intergenic 70.0%
CGCCGACGGGGATGTCACGG+AGG - chr8.1:28594867-28594886 None:intergenic 75.0%
CGTGACATCCCCGTCGGCGG+TGG + chr8.1:28594868-28594887 MS.gene44965:CDS 75.0%
!! TGCTCCGGTGCCGGTGCACC+GGG - chr8.1:28594718-28594737 None:intergenic 75.0%
!! TCGCCCCGGTGCACCGGCAC+CGG + chr8.1:28594711-28594730 MS.gene44965:CDS 80.0%
!!! GCTCCGGTGCCGGTGCACCG+GGG - chr8.1:28594717-28594736 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 28594661 28595389 28594661 ID=MS.gene44965
chr8.1 mRNA 28594661 28595389 28594661 ID=MS.gene44965.t1;Parent=MS.gene44965
chr8.1 exon 28594661 28595389 28594661 ID=MS.gene44965.t1.exon1;Parent=MS.gene44965.t1
chr8.1 CDS 28594661 28595389 28594661 ID=cds.MS.gene44965.t1;Parent=MS.gene44965.t1
Gene Sequence

>MS.gene44965

ATGACATCTTCGGACTCCGGTGAAAGCCGCCGATCAACAAAACCTCAAATTCGCCCCGGTGCACCGGCACCGGAGCAAGAGAATCTCCCATGTCCACGTTGTGACTCAACAAACACCAAGTTTTGTTACTACAACAACTACAACTACTCTCAGCCACGTCATTTCTGCAAAGCTTGTCGCCGCTACTGGACTCACGGTGGTACCCTCCGTGACATCCCCGTCGGCGGTGGTACCAGAAAAAACGCCAAACGCTCTCGTACTCAGCATGTTGCTGTCACTTCCTCATCTTCTTCCTCTGCCGTGACTTCAGCGGCGCCGGAGCACCACCACTATCAAGCAATGACACCCATCTCCGCCGTCCAAGGAGGAGGGTCTTTTCCATTTTCAGGCGGTATTGACGGTGATGGAAAACAGAATATGAGTGTTTGTGGAAGCTTCACTTCATTGCTGAACAACAACAACAACCAAAACTCTGGGTTTCTGGCATTAGGTGGATTTGGGCTTGGGCTTGGACATGGGCTTGAAGAAATGGGGTTTGGGATTGGGAGAACAGGTTGGGCTTTTCCAGGAATGGTGGATGGATCAAACATTGGTGTTCCTGTTGTGTCTTCTGGTGTTGTCGGAAACACGTGGCAGTTAGAAGGTGGTGAAGGTGGTTTTGTTGGTGGTGGTGATTGTTTCTCTTGGCCTGGACTTGCAATTTCAACACCAGTAAATGGTCTCAAATGA
Protein sequence

>MS.gene44965.t1

MTSSDSGESRRSTKPQIRPGAPAPEQENLPCPRCDSTNTKFCYYNNYNYSQPRHFCKACRRYWTHGGTLRDIPVGGGTRKNAKRSRTQHVAVTSSSSSSAVTSAAPEHHHYQAMTPISAVQGGGSFPFSGGIDGDGKQNMSVCGSFTSLLNNNNNQNSGFLALGGFGLGLGHGLEEMGFGIGRTGWAFPGMVDGSNIGVPVVSSGVVGNTWQLEGGEGGFVGGGDCFSWPGLAISTPVNGLK