AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene45032

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45032.t1 MTR_4g059870 47.002 517 202 18 3 489 1 475 1.05e-128 384
MS.gene45032.t1 MTR_2g099990 55.952 336 87 8 38 373 46 320 1.66e-114 346
MS.gene45032.t1 MTR_2g090745 46.781 466 169 18 46 488 15 424 7.93e-112 338
MS.gene45032.t1 MTR_8g017210 88.623 167 18 1 38 204 62 227 9.00e-112 341
MS.gene45032.t1 MTR_2g093960 75.000 196 46 1 38 233 32 224 2.08e-110 333
MS.gene45032.t1 MTR_1g094115 87.952 166 18 2 36 200 44 208 2.53e-109 335
MS.gene45032.t1 MTR_1g016010 44.851 437 179 10 38 470 41 419 5.43e-109 331
MS.gene45032.t1 MTR_1g112270 83.333 168 27 1 41 208 47 213 3.13e-106 328
MS.gene45032.t1 MTR_1g112270 78.212 179 27 2 41 208 47 224 1.43e-102 319
MS.gene45032.t1 MTR_2g099990 53.526 312 84 8 62 373 1 251 2.03e-97 300
MS.gene45032.t1 MTR_1g094115 77.108 166 19 3 36 200 44 191 4.25e-91 288
MS.gene45032.t1 MTR_2g017720 76.724 116 21 2 48 163 323 432 1.15e-55 192
MS.gene45032.t1 MTR_3g102000 64.423 104 29 3 65 164 36 135 5.51e-38 139
MS.gene45032.t1 MTR_5g030560 84.444 45 7 0 48 92 16 60 6.86e-22 90.1
MS.gene45032.t1 MTR_1g093095 34.028 144 83 4 59 191 107 249 3.84e-20 91.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45032.t1 AT5G03150 50.575 522 204 13 1 490 1 500 4.30e-139 410
MS.gene45032.t1 AT3G50700 86.364 176 21 2 26 201 24 196 7.37e-114 344
MS.gene45032.t1 AT5G66730 84.699 183 21 2 19 201 19 194 6.63e-113 343
MS.gene45032.t1 AT3G45260 87.500 168 21 0 38 205 39 206 1.82e-112 340
MS.gene45032.t1 AT3G45260 87.500 168 21 0 38 205 39 206 1.82e-112 340
MS.gene45032.t1 AT5G44160 50.000 374 154 9 34 402 33 378 1.04e-111 339
MS.gene45032.t1 AT5G60470 73.077 208 49 2 3 205 6 211 1.52e-111 338
MS.gene45032.t1 AT5G60470 73.077 208 49 2 3 205 2 207 1.72e-111 338
MS.gene45032.t1 AT1G03840 50.000 382 119 9 34 372 37 389 3.53e-111 339
MS.gene45032.t1 AT4G02670 83.908 174 28 0 37 210 52 225 5.03e-111 335
MS.gene45032.t1 AT4G02670 83.908 174 28 0 37 210 54 227 5.37e-111 335
MS.gene45032.t1 AT2G02080 50.549 364 149 9 29 376 46 394 4.93e-110 336
MS.gene45032.t1 AT2G02080 50.549 364 149 9 29 376 46 394 4.93e-110 336
MS.gene45032.t1 AT2G02080 50.549 364 149 9 29 376 46 394 4.93e-110 336
MS.gene45032.t1 AT2G02080 50.549 364 149 9 29 376 46 394 4.93e-110 336
MS.gene45032.t1 AT3G13810 85.119 168 25 0 38 205 51 218 4.60e-109 333
MS.gene45032.t1 AT3G13810 85.119 168 25 0 38 205 65 232 5.38e-109 333
MS.gene45032.t1 AT3G13810 85.119 168 25 0 38 205 70 237 7.18e-109 333
MS.gene45032.t1 AT3G13810 85.119 168 25 0 38 205 70 237 7.18e-109 333
MS.gene45032.t1 AT1G03840 49.476 382 119 10 34 372 37 387 1.84e-107 329
MS.gene45032.t1 AT1G14580 78.736 174 36 1 37 210 52 224 2.11e-106 325
MS.gene45032.t1 AT1G14580 78.736 174 36 1 37 210 52 224 2.11e-106 325
MS.gene45032.t1 AT1G14580 78.736 174 36 1 37 210 66 238 3.35e-106 325
MS.gene45032.t1 AT2G02070 83.626 171 26 2 38 207 52 221 1.17e-104 325
MS.gene45032.t1 AT2G02070 83.626 171 26 2 38 207 52 221 1.17e-104 325
MS.gene45032.t1 AT5G44160 49.167 360 150 9 48 402 8 339 1.07e-103 317
MS.gene45032.t1 AT3G13810 85.987 157 22 0 49 205 82 238 5.31e-102 315
MS.gene45032.t1 AT3G13810 85.987 157 22 0 49 205 68 224 5.87e-102 315
MS.gene45032.t1 AT5G60470 82.166 157 28 0 49 205 46 202 5.85e-99 305
MS.gene45032.t1 AT2G02080 48.640 331 140 8 62 376 1 317 5.92e-93 290
MS.gene45032.t1 AT2G02080 48.640 331 140 8 62 376 1 317 5.92e-93 290
MS.gene45032.t1 AT2G01940 65.217 161 55 1 35 194 41 201 4.13e-76 246
MS.gene45032.t1 AT1G25250 63.580 162 57 2 33 192 28 189 2.84e-75 242
MS.gene45032.t1 AT1G68130 63.462 156 56 1 38 192 41 196 3.08e-74 241
MS.gene45032.t1 AT2G01940 64.198 162 56 2 35 194 41 202 1.97e-72 237
MS.gene45032.t1 AT1G25250 65.306 147 49 2 48 192 20 166 1.05e-70 229
MS.gene45032.t1 AT2G01940 63.393 112 40 1 84 194 1 112 1.08e-46 166
MS.gene45032.t1 AT1G25250 63.063 111 39 2 84 192 1 111 5.51e-46 163
MS.gene45032.t1 AT1G68130 61.818 110 41 1 84 192 1 110 6.81e-46 163
MS.gene45032.t1 AT5G22890 32.673 202 118 7 5 188 150 351 2.07e-24 105
MS.gene45032.t1 AT1G34370 34.810 158 90 4 47 191 14 171 1.37e-23 100
MS.gene45032.t1 AT1G34370 34.810 158 90 4 47 191 224 381 3.20e-23 103
MS.gene45032.t1 AT1G34370 34.810 158 90 4 47 191 224 381 3.20e-23 103
MS.gene45032.t1 AT1G13290 35.849 159 89 7 59 205 93 250 2.25e-21 95.1
MS.gene45032.t1 AT3G20880 34.247 146 87 4 54 191 243 387 3.52e-19 90.1
MS.gene45032.t1 AT1G34790 32.948 173 100 5 51 208 129 300 5.93e-19 87.8
MS.gene45032.t1 AT3G57670 31.548 168 98 5 54 205 204 370 1.88e-18 87.8
MS.gene45032.t1 AT1G51220 32.877 146 89 4 54 191 165 309 1.90e-18 87.0
MS.gene45032.t1 AT1G08290 37.037 135 75 4 66 191 179 312 3.89e-18 85.9

Find 92 sgRNAs with CRISPR-Local

Find 124 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGAAGATTTCTCTTCTTCT+TGG 0.211257 1.2:+49912896 None:intergenic
CAGAAGGAGCATTAGGTTTA+GGG 0.264157 1.2:+49912922 None:intergenic
GGAATTCCACATCCACAATT+TGG 0.265179 1.2:-49911941 MS.gene45032:CDS
AGTGAAGTGGATAGTGAAAA+AGG 0.270126 1.2:+49912984 None:intergenic
CAAGTAGATTTCAATGGAAT+TGG 0.274341 1.2:-49911902 MS.gene45032:CDS
GGAAGATTTCTCTTCTTCTT+GGG 0.283013 1.2:+49912897 None:intergenic
ACAGAAGGAGCATTAGGTTT+AGG 0.289450 1.2:+49912921 None:intergenic
AAACAACAACTCTATGATTA+TGG 0.293503 1.2:-49911879 MS.gene45032:CDS
GGAGCATTAGGTTTAGGGTT+AGG 0.301624 1.2:+49912927 None:intergenic
TTTGTTGCCATGAGTGTCTT+TGG 0.309658 1.2:+49912735 None:intergenic
ATTATGCACCATGGTGGTTC+TGG 0.314183 1.2:-49911338 MS.gene45032:CDS
ATAAACCAGAAGAACCAAAA+AGG 0.329036 1.2:+49911786 None:intergenic
CTTCTTAATAACATCTTTGT+TGG 0.331545 1.2:+49912611 None:intergenic
CTATCAAAGCCTGCTTCTTC+CGG 0.333625 1.2:-49911644 MS.gene45032:CDS
TCCGATATGCAAATGATTCC+TGG 0.341795 1.2:-49913011 None:intergenic
GACCTCTTCTATGTAGTTGA+AGG 0.344711 1.2:+49912664 None:intergenic
GAGCATTAGGTTTAGGGTTA+GGG 0.346709 1.2:+49912928 None:intergenic
TGGTTCTGGTTCAAACTCTA+TGG 0.352053 1.2:-49911324 MS.gene45032:CDS
CATGGAATACTTCAAAATAT+TGG 0.352848 1.2:-49911965 MS.gene45032:CDS
TTGGGGACAGAAGGAGCATT+AGG 0.361121 1.2:+49912915 None:intergenic
GTCCCATTTCATGATTCCCT+TGG 0.362528 1.2:+49911822 None:intergenic
TTTCCTTGTTGATCACTTTG+TGG 0.363250 1.2:+49911368 None:intergenic
TCTTCTTCATCATCAATGTT+TGG 0.374372 1.2:-49911707 MS.gene45032:CDS
ATGAATATACCTGGTGTTCC+TGG 0.396720 1.2:+49912876 None:intergenic
AAACCAAGGGAATCATGAAA+TGG 0.400103 1.2:-49911825 MS.gene45032:CDS
TTTATCTGAGATAGTTCAAA+TGG 0.400334 1.2:-49911768 MS.gene45032:CDS
TGCTTCTTCCGGTTCTGTTA+CGG 0.412928 1.2:-49911633 MS.gene45032:CDS
CACTATCCACTTCACTTGGT+GGG 0.416726 1.2:-49912977 MS.gene45032:CDS
TATGAGCTTTCCAATCAGAT+TGG 0.425071 1.2:+49912442 None:intergenic
CTCTTCTTCTTGGGGACAGA+AGG 0.425270 1.2:+49912906 None:intergenic
TTCTACTAGTTCAGCTATGT+TGG 0.428171 1.2:-49911468 MS.gene45032:CDS
TCTACTAGTTCAGCTATGTT+GGG 0.430741 1.2:-49911467 MS.gene45032:CDS
TGGTGGACACAAGTCTTCTC+TGG 0.431235 1.2:+49912573 None:intergenic
AGAGCAATAACCTCGGCATC+TGG 0.433782 1.2:+49912762 None:intergenic
TCACTATCCACTTCACTTGG+TGG 0.459561 1.2:-49912978 MS.gene45032:CDS
GATCTCTGTCTTAGCTTCCA+TGG 0.464655 1.2:+49912633 None:intergenic
AGCAGAAACCGTAACAGAAC+CGG 0.465912 1.2:+49911625 None:intergenic
CTGATTACCTGTGAATTGAA+TGG 0.467069 1.2:+49911193 None:intergenic
AATATGCAGTCCAATCTGAT+TGG 0.470247 1.2:-49912452 MS.gene45032:CDS
AAAGGCCAAGTTTATCACTT+TGG 0.471302 1.2:-49911850 MS.gene45032:CDS
AAGAAGAAGAGAAATCTTCC+AGG 0.472027 1.2:-49912894 MS.gene45032:CDS
GAAGATTTCTCTTCTTCTTG+GGG 0.478434 1.2:+49912898 None:intergenic
TTTCTTGGTGTGAGTGGTGG+AGG 0.481376 1.2:-49911269 MS.gene45032:CDS
CATCCACAATTTGGCTCACA+TGG 0.483947 1.2:-49911932 MS.gene45032:CDS
GCTTCTTCCATTCAATTCAC+AGG 0.484056 1.2:-49911200 MS.gene45032:CDS
TATCATCAAGTAGATTTCAA+TGG 0.492025 1.2:-49911908 MS.gene45032:CDS
TCTGTCTTAGCTTCCATGGA+AGG 0.492579 1.2:+49912637 None:intergenic
GTGAGTGGTGGAGGAAGAAC+TGG 0.493538 1.2:-49911260 MS.gene45032:CDS
AACCAAGGGAATCATGAAAT+GGG 0.497808 1.2:-49911824 MS.gene45032:CDS
TCTGTGAAATATGCAACAAA+GGG 0.500256 1.2:-49912704 MS.gene45032:CDS
AATATTATACCTTGAGAAGA+GGG 0.509866 1.2:+49912377 None:intergenic
ATCTGTGAAATATGCAACAA+AGG 0.510966 1.2:-49912705 MS.gene45032:CDS
GAAGAGGTCACAACCTTCCA+TGG 0.514490 1.2:-49912650 MS.gene45032:CDS
TTTAACCAAAGTGATAAACT+TGG 0.528252 1.2:+49911845 None:intergenic
AGATCACCAAGTGCTCTTGA+AGG 0.529586 1.2:+49912546 None:intergenic
GCAGATGTTGAATTTGAAGC+AGG 0.534808 1.2:+49911680 None:intergenic
GGAATACTTCAAAATATTGG+TGG 0.535088 1.2:-49911962 MS.gene45032:CDS
TGATGAAGAAGAACAAATCA+AGG 0.539973 1.2:+49911718 None:intergenic
CATGACCCTTCAAGAGCACT+TGG 0.544018 1.2:-49912552 MS.gene45032:CDS
ATGTTGGGAAATAGTAGTGC+AGG 0.545999 1.2:-49911452 MS.gene45032:CDS
ACTAAACCCACCAAGTGAAG+TGG 0.557454 1.2:+49912971 None:intergenic
TGTGAGCCAAATTGTGGATG+TGG 0.558064 1.2:+49911935 None:intergenic
TATCACTTTGGTTAAACCAA+GGG 0.558927 1.2:-49911838 MS.gene45032:CDS
AGAAATCTTCCAGGAACACC+AGG 0.564051 1.2:-49912885 MS.gene45032:intron
CAAGTGCTCTTGAAGGGTCA+TGG 0.570425 1.2:+49912553 None:intergenic
GAAAGCACGGTGAAAAGAAG+TGG 0.572977 1.2:-49912497 MS.gene45032:CDS
AAATATTATACCTTGAGAAG+AGG 0.578176 1.2:+49912376 None:intergenic
AACCTTCAACTACATAGAAG+AGG 0.579451 1.2:-49912666 MS.gene45032:CDS
GCTGAACTAGTAGAAGAAGA+AGG 0.581667 1.2:+49911476 None:intergenic
TTATCTGAGATAGTTCAAAT+GGG 0.582881 1.2:-49911767 MS.gene45032:CDS
ACTGTGGCACCCTCTTCTCA+AGG 0.585281 1.2:-49912386 MS.gene45032:intron
GTAACAGAACCGGAAGAAGC+AGG 0.590283 1.2:+49911635 None:intergenic
GATCACCAAGTGCTCTTGAA+GGG 0.591900 1.2:+49912547 None:intergenic
AGAGCACTTGGTGATCTCAC+AGG 0.592028 1.2:-49912540 MS.gene45032:CDS
TCACAACATGGTTTATCACA+TGG 0.594739 1.2:-49911983 MS.gene45032:CDS
CTATGATTATGGAGCAACAA+AGG 0.599161 1.2:-49911868 MS.gene45032:CDS
TTATCACTTTGGTTAAACCA+AGG 0.601736 1.2:-49911839 MS.gene45032:CDS
TGTGAATGTGAATGTGAATG+TGG 0.606907 1.2:+49912001 None:intergenic
TCTTGAGGTAGAAACTGATG+TGG 0.615192 1.2:+49911236 None:intergenic
TATCCATGTGAGCCAAATTG+TGG 0.615294 1.2:+49911929 None:intergenic
AAGCACTTTAGTAGAAAGCA+CGG 0.627488 1.2:-49912510 MS.gene45032:CDS
TCACATTCACATTCACAACA+TGG 0.630698 1.2:-49911995 MS.gene45032:CDS
TTGAATATTATGCACCATGG+TGG 0.642049 1.2:-49911344 MS.gene45032:CDS
TCTATCACCAAAGACACTCA+TGG 0.646655 1.2:-49912742 MS.gene45032:CDS
AGAAGAGCAGTAGCTGACAT+TGG 0.651547 1.2:+49911599 None:intergenic
CTATACAGATCCAGATGCCG+AGG 0.652908 1.2:-49912772 MS.gene45032:intron
GTGCTCTTGAAGGGTCATGG+TGG 0.656702 1.2:+49912556 None:intergenic
AGAGAATACAAATGTGACTG+TGG 0.678918 1.2:-49912402 MS.gene45032:CDS
AAATTGAATATTATGCACCA+TGG 0.694171 1.2:-49911347 MS.gene45032:CDS
AGTTTGAACCAGAACCACCA+TGG 0.710092 1.2:+49911330 None:intergenic
TGGTGATAGAGCAATAACCT+CGG 0.716517 1.2:+49912755 None:intergenic
GGACCACAAAGTGATCAACA+AGG 0.742344 1.2:-49911371 MS.gene45032:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTTTCATATATTTCAAAT+TGG - chr1.2:49911382-49911401 MS.gene45032:CDS 15.0%
!! CATATATTTCAAATTGGTAA+TGG - chr1.2:49911388-49911407 MS.gene45032:CDS 20.0%
!! GAATTTAATGCTTTCTTTAA+TGG - chr1.2:49911972-49911991 MS.gene45032:CDS 20.0%
!!! CTAAATTTTAAGAATGAAGA+AGG - chr1.2:49912155-49912174 MS.gene45032:intron 20.0%
! AAACAACAACTCTATGATTA+TGG - chr1.2:49912316-49912335 MS.gene45032:intron 25.0%
! AAACTAGAACTAAAAATGGA+AGG + chr1.2:49912683-49912702 None:intergenic 25.0%
! AAATATTATACCTTGAGAAG+AGG + chr1.2:49911822-49911841 None:intergenic 25.0%
! AAATTGAATATTATGCACCA+TGG - chr1.2:49912848-49912867 MS.gene45032:intron 25.0%
! AACTAGAACTAAAAATGGAA+GGG + chr1.2:49912682-49912701 None:intergenic 25.0%
! AATATTATACCTTGAGAAGA+GGG + chr1.2:49911821-49911840 None:intergenic 25.0%
! ACAAAAGATTGGTGAATAAA+AGG + chr1.2:49911855-49911874 None:intergenic 25.0%
! ACCAAAACTAGAACTAAAAA+TGG + chr1.2:49912687-49912706 None:intergenic 25.0%
! CATGGAATACTTCAAAATAT+TGG - chr1.2:49912230-49912249 MS.gene45032:intron 25.0%
! CTTCTTAATAACATCTTTGT+TGG + chr1.2:49911587-49911606 None:intergenic 25.0%
! TAATCATGAATGAATATACC+TGG + chr1.2:49911331-49911350 None:intergenic 25.0%
! TATCATCAAGTAGATTTCAA+TGG - chr1.2:49912287-49912306 MS.gene45032:intron 25.0%
! TTATCACAGAAACAAAAGAT+TGG + chr1.2:49911866-49911885 None:intergenic 25.0%
! TTTAACCAAAGTGATAAACT+TGG + chr1.2:49912353-49912372 None:intergenic 25.0%
!! AATTTGACAAGAGATTTTCT+TGG - chr1.2:49912911-49912930 MS.gene45032:CDS 25.0%
!! TTATCTGAGATAGTTCAAAT+GGG - chr1.2:49912428-49912447 MS.gene45032:CDS 25.0%
!! TTTATCTGAGATAGTTCAAA+TGG - chr1.2:49912427-49912446 MS.gene45032:CDS 25.0%
!!! GGATTATATTTTTATGTGTC+TGG - chr1.2:49911993-49912012 MS.gene45032:CDS 25.0%
!!! TCCATTTTTAGTTCTAGTTT+TGG - chr1.2:49912683-49912702 MS.gene45032:CDS 25.0%
!!! TGTTGATATTTTGAACAGAA+AGG - chr1.2:49912052-49912071 MS.gene45032:CDS 25.0%
AAAGCTCATACAAAAACATG+TGG - chr1.2:49911766-49911785 MS.gene45032:CDS 30.0%
ATAAACCAGAAGAACCAAAA+AGG + chr1.2:49912412-49912431 None:intergenic 30.0%
ATCTGTGAAATATGCAACAA+AGG - chr1.2:49911490-49911509 MS.gene45032:CDS 30.0%
CAAGTAGATTTCAATGGAAT+TGG - chr1.2:49912293-49912312 MS.gene45032:intron 30.0%
GGAATACTTCAAAATATTGG+TGG - chr1.2:49912233-49912252 MS.gene45032:intron 30.0%
TAAACCAGAAGAACCAAAAA+GGG + chr1.2:49912411-49912430 None:intergenic 30.0%
TATCACTTTGGTTAAACCAA+GGG - chr1.2:49912357-49912376 MS.gene45032:intron 30.0%
TCTGTGAAATATGCAACAAA+GGG - chr1.2:49911491-49911510 MS.gene45032:CDS 30.0%
TCTTCTTCATCATCAATGTT+TGG - chr1.2:49912488-49912507 MS.gene45032:CDS 30.0%
TGATGAAGAAGAACAAATCA+AGG + chr1.2:49912480-49912499 None:intergenic 30.0%
TTATCACTTTGGTTAAACCA+AGG - chr1.2:49912356-49912375 MS.gene45032:intron 30.0%
! TTTGATCAGTTTTTCATGCA+TGG - chr1.2:49912803-49912822 MS.gene45032:intron 30.0%
!! CAAAGTTCTAATTCCCTTTT+TGG - chr1.2:49912395-49912414 MS.gene45032:CDS 30.0%
!!! AGATTGGACTGCATATTTTT+TGG + chr1.2:49911740-49911759 None:intergenic 30.0%
AAACCAAGGGAATCATGAAA+TGG - chr1.2:49912370-49912389 MS.gene45032:intron 35.0%
AAAGGCCAAGTTTATCACTT+TGG - chr1.2:49912345-49912364 MS.gene45032:intron 35.0%
AACCAAGGGAATCATGAAAT+GGG - chr1.2:49912371-49912390 MS.gene45032:intron 35.0%
AACCTTCAACTACATAGAAG+AGG - chr1.2:49911529-49911548 MS.gene45032:CDS 35.0%
AAGAAGAAGAGAAATCTTCC+AGG - chr1.2:49911301-49911320 MS.gene45032:CDS 35.0%
AAGCACTTTAGTAGAAAGCA+CGG - chr1.2:49911685-49911704 MS.gene45032:CDS 35.0%
AATATGCAGTCCAATCTGAT+TGG - chr1.2:49911743-49911762 MS.gene45032:CDS 35.0%
AGAGAATACAAATGTGACTG+TGG - chr1.2:49911793-49911812 MS.gene45032:CDS 35.0%
AGTGAAGTGGATAGTGAAAA+AGG + chr1.2:49911214-49911233 None:intergenic 35.0%
CCAATCATGTATGTTGTGTT+AGG - chr1.2:49911945-49911964 MS.gene45032:CDS 35.0%
CCTAACACAACATACATGAT+TGG + chr1.2:49911948-49911967 None:intergenic 35.0%
CTATGATTATGGAGCAACAA+AGG - chr1.2:49912327-49912346 MS.gene45032:intron 35.0%
CTGATTACCTGTGAATTGAA+TGG + chr1.2:49913005-49913024 None:intergenic 35.0%
GAAGATTTCTCTTCTTCTTG+GGG + chr1.2:49911300-49911319 None:intergenic 35.0%
GGAAGATTTCTCTTCTTCTT+GGG + chr1.2:49911301-49911320 None:intergenic 35.0%
GTGAAGTGGATAGTGAAAAA+GGG + chr1.2:49911213-49911232 None:intergenic 35.0%
TATGAGCTTTCCAATCAGAT+TGG + chr1.2:49911756-49911775 None:intergenic 35.0%
TCACAACATGGTTTATCACA+TGG - chr1.2:49912212-49912231 MS.gene45032:intron 35.0%
TCACATTCACATTCACAACA+TGG - chr1.2:49912200-49912219 MS.gene45032:intron 35.0%
TCATATTTGTGACATGTACG+AGG - chr1.2:49911917-49911936 MS.gene45032:CDS 35.0%
TCTACTAGTTCAGCTATGTT+GGG - chr1.2:49912728-49912747 MS.gene45032:CDS 35.0%
TGGAAGATTTCTCTTCTTCT+TGG + chr1.2:49911302-49911321 None:intergenic 35.0%
TGTGAATGTGAATGTGAATG+TGG + chr1.2:49912197-49912216 None:intergenic 35.0%
TTCTACTAGTTCAGCTATGT+TGG - chr1.2:49912727-49912746 MS.gene45032:CDS 35.0%
TTGAATATTATGCACCATGG+TGG - chr1.2:49912851-49912870 MS.gene45032:intron 35.0%
TTTCCTTGTTGATCACTTTG+TGG + chr1.2:49912830-49912849 None:intergenic 35.0%
! TTTTCACTATCCACTTCACT+TGG - chr1.2:49911214-49911233 MS.gene45032:CDS 35.0%
!! GCAAATTTTGCTATCTCTTG+AGG + chr1.2:49912977-49912996 None:intergenic 35.0%
!! GTTGAAGGTTTTGATCTCTT+TGG + chr1.2:49911519-49911538 None:intergenic 35.0%
!!! AATTCCCTTTTTGGTTCTTC+TGG - chr1.2:49912404-49912423 MS.gene45032:CDS 35.0%
ATGAATATACCTGGTGTTCC+TGG + chr1.2:49911322-49911341 None:intergenic 40.0%
ATGTTGGGAAATAGTAGTGC+AGG - chr1.2:49912743-49912762 MS.gene45032:CDS 40.0%
CTGCAAAAAGCAGCTCAAAT+GGG - chr1.2:49912617-49912636 MS.gene45032:CDS 40.0%
GACCTCTTCTATGTAGTTGA+AGG + chr1.2:49911534-49911553 None:intergenic 40.0%
GCTGAACTAGTAGAAGAAGA+AGG + chr1.2:49912722-49912741 None:intergenic 40.0%
GCTTCTTCCATTCAATTCAC+AGG - chr1.2:49912995-49913014 MS.gene45032:CDS 40.0%
GGAATTCCACATCCACAATT+TGG - chr1.2:49912254-49912273 MS.gene45032:intron 40.0%
TATCCATGTGAGCCAAATTG+TGG + chr1.2:49912269-49912288 None:intergenic 40.0%
TCTATCACCAAAGACACTCA+TGG - chr1.2:49911453-49911472 MS.gene45032:CDS 40.0%
TCTGCAAAAAGCAGCTCAAA+TGG - chr1.2:49912616-49912635 MS.gene45032:CDS 40.0%
TCTTGAGGTAGAAACTGATG+TGG + chr1.2:49912962-49912981 None:intergenic 40.0%
TGGTGATAGAGCAATAACCT+CGG + chr1.2:49911443-49911462 None:intergenic 40.0%
TTTGTTGCCATGAGTGTCTT+TGG + chr1.2:49911463-49911482 None:intergenic 40.0%
! CAGAGCTTTTTGTGATGCAT+TGG - chr1.2:49912091-49912110 MS.gene45032:CDS 40.0%
! GAGCATTAGGTTTAGGGTTA+GGG + chr1.2:49911270-49911289 None:intergenic 40.0%
! GCAGATGTTGAATTTGAAGC+AGG + chr1.2:49912518-49912537 None:intergenic 40.0%
!! ACAGAAGGAGCATTAGGTTT+AGG + chr1.2:49911277-49911296 None:intergenic 40.0%
!! AGAGATTTTCTTGGTGTGAG+TGG - chr1.2:49912920-49912939 MS.gene45032:CDS 40.0%
!! CAGAAGGAGCATTAGGTTTA+GGG + chr1.2:49911276-49911295 None:intergenic 40.0%
!! TGGTTCTGGTTCAAACTCTA+TGG - chr1.2:49912871-49912890 MS.gene45032:intron 40.0%
ACTAAACCCACCAAGTGAAG+TGG + chr1.2:49911227-49911246 None:intergenic 45.0%
AGAAATCTTCCAGGAACACC+AGG - chr1.2:49911310-49911329 MS.gene45032:CDS 45.0%
AGAAGAGCAGTAGCTGACAT+TGG + chr1.2:49912599-49912618 None:intergenic 45.0%
AGATCACCAAGTGCTCTTGA+AGG + chr1.2:49911652-49911671 None:intergenic 45.0%
AGCAGAAACCGTAACAGAAC+CGG + chr1.2:49912573-49912592 None:intergenic 45.0%
AGTTTGAACCAGAACCACCA+TGG + chr1.2:49912868-49912887 None:intergenic 45.0%
ATTATGCACCATGGTGGTTC+TGG - chr1.2:49912857-49912876 MS.gene45032:intron 45.0%
CACTATCCACTTCACTTGGT+GGG - chr1.2:49911218-49911237 MS.gene45032:CDS 45.0%
CTATCAAAGCCTGCTTCTTC+CGG - chr1.2:49912551-49912570 MS.gene45032:CDS 45.0%
GATAGTGAAAAAGGGTCACC+AGG + chr1.2:49911205-49911224 None:intergenic 45.0%
GATCACCAAGTGCTCTTGAA+GGG + chr1.2:49911651-49911670 None:intergenic 45.0%
GATCTCTGTCTTAGCTTCCA+TGG + chr1.2:49911565-49911584 None:intergenic 45.0%
GGACCACAAAGTGATCAACA+AGG - chr1.2:49912824-49912843 MS.gene45032:intron 45.0%
GTCCCATTTCATGATTCCCT+TGG + chr1.2:49912376-49912395 None:intergenic 45.0%
TCACTATCCACTTCACTTGG+TGG - chr1.2:49911217-49911236 MS.gene45032:CDS 45.0%
TCTGTCTTAGCTTCCATGGA+AGG + chr1.2:49911561-49911580 None:intergenic 45.0%
TGCTTCTTCCGGTTCTGTTA+CGG - chr1.2:49912562-49912581 MS.gene45032:CDS 45.0%
TGTGAGCCAAATTGTGGATG+TGG + chr1.2:49912263-49912282 None:intergenic 45.0%
! CATCCACAATTTGGCTCACA+TGG - chr1.2:49912263-49912282 MS.gene45032:intron 45.0%
! GAAAGCACGGTGAAAAGAAG+TGG - chr1.2:49911698-49911717 MS.gene45032:CDS 45.0%
! GGAGCATTAGGTTTAGGGTT+AGG + chr1.2:49911271-49911290 None:intergenic 45.0%
!! GATTTTCTTGGTGTGAGTGG+TGG - chr1.2:49912923-49912942 MS.gene45032:CDS 45.0%
AGAGCAATAACCTCGGCATC+TGG + chr1.2:49911436-49911455 None:intergenic 50.0%
CAAGTGCTCTTGAAGGGTCA+TGG + chr1.2:49911645-49911664 None:intergenic 50.0%
CTATACAGATCCAGATGCCG+AGG - chr1.2:49911423-49911442 MS.gene45032:CDS 50.0%
CTCTTCTTCTTGGGGACAGA+AGG + chr1.2:49911292-49911311 None:intergenic 50.0%
GAAGAGGTCACAACCTTCCA+TGG - chr1.2:49911545-49911564 MS.gene45032:CDS 50.0%
GTAACAGAACCGGAAGAAGC+AGG + chr1.2:49912563-49912582 None:intergenic 50.0%
! AGAGCACTTGGTGATCTCAC+AGG - chr1.2:49911655-49911674 MS.gene45032:CDS 50.0%
! TGGTGGACACAAGTCTTCTC+TGG + chr1.2:49911625-49911644 None:intergenic 50.0%
! TTTCTTGGTGTGAGTGGTGG+AGG - chr1.2:49912926-49912945 MS.gene45032:CDS 50.0%
!! CATGACCCTTCAAGAGCACT+TGG - chr1.2:49911643-49911662 MS.gene45032:CDS 50.0%
!! TTGGGGACAGAAGGAGCATT+AGG + chr1.2:49911283-49911302 None:intergenic 50.0%
ACTGTGGCACCCTCTTCTCA+AGG - chr1.2:49911809-49911828 MS.gene45032:CDS 55.0%
GTGCTCTTGAAGGGTCATGG+TGG + chr1.2:49911642-49911661 None:intergenic 55.0%
! GTGAGTGGTGGAGGAAGAAC+TGG - chr1.2:49912935-49912954 MS.gene45032:CDS 55.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 49911190 49913027 49911190 ID=MS.gene45032
chr1.2 mRNA 49911190 49913027 49911190 ID=MS.gene45032.t1;Parent=MS.gene45032
chr1.2 exon 49912886 49913027 49912886 ID=MS.gene45032.t1.exon1;Parent=MS.gene45032.t1
chr1.2 CDS 49912886 49913027 49912886 ID=cds.MS.gene45032.t1;Parent=MS.gene45032.t1
chr1.2 exon 49912387 49912786 49912387 ID=MS.gene45032.t1.exon2;Parent=MS.gene45032.t1
chr1.2 CDS 49912387 49912786 49912387 ID=cds.MS.gene45032.t1;Parent=MS.gene45032.t1
chr1.2 exon 49911190 49912147 49911190 ID=MS.gene45032.t1.exon3;Parent=MS.gene45032.t1
chr1.2 CDS 49911190 49912147 49911190 ID=cds.MS.gene45032.t1;Parent=MS.gene45032.t1
Gene Sequence

>MS.gene45032

ATGCAAATGATTCCTGGTGACCCTTTTTCACTATCCACTTCACTTGGTGGGTTTAGTACTCAAGAGCAAAACACAAACCCTAACCCTAAACCTAATGCTCCTTCTGTCCCCAAGAAGAAGAGAAATCTTCCAGGAACACCAGGTATATTCATTCATGATTACAGAAATTTTTGTATGATTTTCAATTTGTTACTTTTTCATATATTTCAAATTGGTAATGGAAATTAATTTGACTATACAGATCCAGATGCCGAGGTTATTGCTCTATCACCAAAGACACTCATGGCAACAAACAGATTCATCTGTGAAATATGCAACAAAGGGTTCCAAAGAGATCAAAACCTTCAACTACATAGAAGAGGTCACAACCTTCCATGGAAGCTAAGACAGAGATCCAACAAAGATGTTATTAAGAAGAAAGTTTACATCTGTCCAGAGAAGACTTGTGTCCACCATGACCCTTCAAGAGCACTTGGTGATCTCACAGGTATAAAAAAGCACTTTAGTAGAAAGCACGGTGAAAAGAAGTGGAAATGTGAAAAATGTTCCAAAAAATATGCAGTCCAATCTGATTGGAAAGCTCATACAAAAACATGTGGTACAAGAGAATACAAATGTGACTGTGGCACCCTCTTCTCAAGGTATAATATTTAATATACTCTCCTTTTATTCACCAATCTTTTGTTTCTGTGATAAATCAATAAATGCTTCTTTAATTTATTCATATTCATATTTGTGACATGTACGAGGTTTTTCCAATCATGTATGTTGTGTTAGGTTTTGAATTTAATGCTTTCTTTAATGGATTATATTTTTATGTGTCTGGTTTTAAGTTTTAATTAAGTTTTAATGTCTGTTTTTTTGTTGATATTTTGAACAGAAAGGATAGTTTCATTACACACAGAGCTTTTTGTGATGCATTGGCAGAAGAGAGTGCAAGAGTAACTTCAGTTACAACAACAAATCTAAATTTTAAGAATGAAGAAGGTAGTGCTATGATGAATCCACATTCACATTCACATTCACAACATGGTTTATCACATGGAATACTTCAAAATATTGGTGGAATTCCACATCCACAATTTGGCTCACATGGATATCATCAAGTAGATTTCAATGGAATTGGAAACAACAACTCTATGATTATGGAGCAACAAAGGCCAAGTTTATCACTTTGGTTAAACCAAGGGAATCATGAAATGGGACAAAGTTCTAATTCCCTTTTTGGTTCTTCTGGTTTATCTGAGATAGTTCAAATGGGAAATGCTACTACTAATAATAATAATGCCTTGATTTGTTCTTCTTCATCATCAATGTTTGGTGTACCTGCTTCAAATTCAACATCTGCTGCAAATCTTTCTCTATCAAAGCCTGCTTCTTCCGGTTCTGTTACGGTTTCTGCTACACCAATGTCAGCTACTGCTCTTCTGCAAAAAGCAGCTCAAATGGGTTCAACTAGAAGCAATACTAGTAATGATAATAATAACAACCCTTCCATTTTTAGTTCTAGTTTTGGTGTAATGACATCACCTTCTTCTTCTACTAGTTCAGCTATGTTGGGAAATAGTAGTGCAGGTGCAGCTGCTAATGCTAATTATAGCTCAAATAGTAGTTTTGATCAGTTTTTCATGCATGGACCACAAAGTGATCAACAAGGAAAATTGAATATTATGCACCATGGTGGTTCTGGTTCAAACTCTATGGATCAAGTACAACATAGTAATTTGACAAGAGATTTTCTTGGTGTGAGTGGTGGAGGAAGAACTGGTCCACATCAGTTTCTACCTCAAGAGATAGCAAAATTTGCTTCTTCCATTCAATTCACAGGTAATCAGTGA
Protein sequence

>MS.gene45032.t1

MQMIPGDPFSLSTSLGGFSTQEQNTNPNPKPNAPSVPKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKDVIKKKVYICPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARVTSVTTTNLNFKNEEGSAMMNPHSHSHSQHGLSHGILQNIGGIPHPQFGSHGYHQVDFNGIGNNNSMIMEQQRPSLSLWLNQGNHEMGQSSNSLFGSSGLSEIVQMGNATTNNNNALICSSSSSMFGVPASNSTSAANLSLSKPASSGSVTVSATPMSATALLQKAAQMGSTRSNTSNDNNNNPSIFSSSFGVMTSPSSSTSSAMLGNSSAGAAANANYSSNSSFDQFFMHGPQSDQQGKLNIMHHGGSGSNSMDQVQHSNLTRDFLGVSGGGRTGPHQFLPQEIAKFASSIQFTGNQ