AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene45088


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45088.t1 MTR_5g035060 97.706 218 5 0 313 530 67 284 2.63e-154 444
MS.gene45088.t1 MTR_5g035070 92.632 190 14 0 128 317 207 396 1.87e-122 368
MS.gene45088.t1 MTR_5g035070 95.620 137 6 0 1 137 1 137 1.33e-69 231
MS.gene45088.t1 MTR_5g035090 73.822 191 48 2 128 318 203 391 1.18e-94 296
MS.gene45088.t1 MTR_5g035090 50.370 135 65 2 3 137 1 133 9.89e-34 133
MS.gene45088.t1 MTR_5g035040 61.943 247 56 5 291 530 146 361 1.44e-91 286
MS.gene45088.t1 MTR_5g035150 63.351 191 70 0 128 318 205 395 1.81e-79 256
MS.gene45088.t1 MTR_5g035150 51.852 135 63 2 5 137 1 135 9.85e-35 136
MS.gene45088.t1 MTR_5g035140 59.016 183 71 3 139 318 48 229 1.78e-72 233
MS.gene45088.t1 MTR_3g109840 54.404 193 85 2 128 318 188 379 4.94e-67 223
MS.gene45088.t1 MTR_3g109840 45.806 155 62 8 4 157 5 138 1.03e-26 113
MS.gene45088.t1 MTR_5g035080 56.186 194 82 2 128 318 191 384 3.84e-66 221
MS.gene45088.t1 MTR_5g035080 55.000 100 34 3 38 137 37 125 9.50e-28 116
MS.gene45088.t1 MTR_8g104970 54.645 183 79 3 139 318 248 429 2.87e-65 220
MS.gene45088.t1 MTR_8g104970 38.037 163 58 3 18 137 8 170 4.15e-24 105
MS.gene45088.t1 MTR_7g033230 54.696 181 78 3 139 316 392 571 4.36e-60 210
MS.gene45088.t1 MTR_7g033230 60.000 70 25 2 68 137 248 314 5.59e-21 97.4
MS.gene45088.t1 MTR_7g033230 52.880 191 86 3 129 316 452 641 2.02e-59 209
MS.gene45088.t1 MTR_7g033230 60.000 70 25 2 68 137 318 384 7.43e-21 97.1
MS.gene45088.t1 MTR_5g035050 95.833 72 3 0 458 529 29 100 4.79e-41 144
MS.gene45088.t1 MTR_6g016880 38.542 192 110 4 129 316 198 385 3.26e-40 151
MS.gene45088.t1 MTR_6g016880 37.500 112 65 4 30 137 18 128 5.91e-15 77.8
MS.gene45088.t1 MTR_7g019120 38.220 191 108 5 132 316 200 386 1.87e-36 141
MS.gene45088.t1 MTR_7g019120 35.965 114 64 2 26 137 23 129 1.36e-15 79.7
MS.gene45088.t1 MTR_8g027900 42.012 169 92 3 149 316 354 517 2.78e-34 137
MS.gene45088.t1 MTR_8g027900 53.704 54 25 0 84 137 208 261 1.33e-13 73.9
MS.gene45088.t1 MTR_8g099300 40.588 170 94 5 149 316 217 381 2.13e-32 129
MS.gene45088.t1 MTR_8g099300 32.331 133 81 3 5 137 1 124 2.67e-17 84.7
MS.gene45088.t1 MTR_6g016875 35.079 191 114 4 132 316 188 374 4.12e-32 129
MS.gene45088.t1 MTR_6g016875 37.037 108 51 3 30 137 24 114 2.42e-15 79.0
MS.gene45088.t1 MTR_6g007777 38.596 171 102 2 150 319 260 428 2.74e-31 127
MS.gene45088.t1 MTR_6g007777 33.333 165 73 7 8 137 5 167 6.48e-16 80.9
MS.gene45088.t1 MTR_5g035120 46.617 133 62 3 5 137 2 125 4.78e-31 119
MS.gene45088.t1 MTR_2g016060 35.882 170 99 7 150 316 205 367 5.13e-27 113
MS.gene45088.t1 MTR_4g102570 44.545 110 55 2 135 244 19 122 2.16e-24 100
MS.gene45088.t1 MTR_7g019130 36.290 124 70 4 132 249 5 125 5.04e-19 84.3
MS.gene45088.t1 MTR_7g019140 35.246 122 69 3 19 137 15 129 1.97e-18 83.6
MS.gene45088.t1 MTR_0929s0010 55.102 49 22 0 87 135 79 127 1.04e-15 74.3
MS.gene45088.t1 MTR_6g061710 50.980 51 25 0 87 137 167 217 1.27e-12 70.9
MS.gene45088.t1 MTR_1g076690 50.980 51 25 0 87 137 223 273 1.34e-12 70.9
MS.gene45088.t1 MTR_1g076690 28.324 173 115 5 148 316 361 528 4.50e-12 68.9
MS.gene45088.t1 MTR_7g093450 50.980 51 25 0 87 137 248 298 3.89e-12 69.3
MS.gene45088.t1 MTR_8g093530 47.059 51 27 0 87 137 90 140 2.41e-11 66.2
MS.gene45088.t1 MTR_0136s0010 50.980 51 25 0 87 137 170 220 2.81e-11 66.6
MS.gene45088.t1 MTR_7g094750 44.231 52 29 0 86 137 90 141 7.04e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45088.t1 AT1G24040 59.402 234 92 2 305 536 72 304 7.53e-92 285
MS.gene45088.t1 AT1G24040 59.402 234 92 2 305 536 72 304 7.53e-92 285
MS.gene45088.t1 AT1G24040 59.402 234 92 2 305 536 72 304 7.53e-92 285
MS.gene45088.t1 AT1G70230 53.927 191 72 5 128 317 199 374 2.63e-57 197
MS.gene45088.t1 AT1G70230 44.068 118 65 1 20 137 13 129 1.05e-26 113
MS.gene45088.t1 AT3G02440 41.304 184 103 3 135 316 262 442 8.00e-38 146
MS.gene45088.t1 AT3G02440 56.863 51 22 0 87 137 135 185 5.39e-14 75.1
MS.gene45088.t1 AT3G02440 41.304 184 103 3 135 316 254 434 8.73e-38 145
MS.gene45088.t1 AT3G02440 56.863 51 22 0 87 137 127 177 5.84e-14 74.7
MS.gene45088.t1 AT5G15890 35.945 217 116 7 123 323 288 497 8.66e-36 141
MS.gene45088.t1 AT5G15890 39.583 96 53 2 42 137 147 237 7.46e-15 77.8
MS.gene45088.t1 AT5G15900 40.698 172 88 5 150 316 213 375 9.10e-34 133
MS.gene45088.t1 AT5G15900 50.000 52 26 0 86 137 66 117 6.09e-13 71.2
MS.gene45088.t1 AT5G15900 40.698 172 88 5 150 316 232 394 1.11e-33 133
MS.gene45088.t1 AT5G15900 50.000 52 26 0 86 137 85 136 5.79e-13 71.6
MS.gene45088.t1 AT1G01430 36.316 190 106 5 149 327 240 425 3.10e-31 127
MS.gene45088.t1 AT1G01430 36.522 115 61 3 46 159 64 167 5.62e-15 77.8
MS.gene45088.t1 AT4G01080 39.766 171 93 6 149 316 228 391 1.22e-30 125
MS.gene45088.t1 AT4G01080 47.761 67 33 1 73 137 75 141 8.18e-15 77.4
MS.gene45088.t1 AT4G23790 32.941 170 109 3 149 316 223 389 2.12e-26 112
MS.gene45088.t1 AT4G23790 35.652 115 71 2 27 138 17 131 1.66e-16 82.4
MS.gene45088.t1 AT3G28150 32.418 182 119 3 139 319 203 381 2.20e-25 108
MS.gene45088.t1 AT3G28150 43.478 92 40 3 85 175 68 148 5.36e-17 84.0
MS.gene45088.t1 AT4G11090 33.333 171 105 5 149 316 223 387 3.98e-22 99.8
MS.gene45088.t1 AT4G11090 51.923 52 24 1 87 137 79 130 1.18e-13 73.6
MS.gene45088.t1 AT4G25360 40.506 79 47 0 59 137 147 225 6.72e-14 74.7
MS.gene45088.t1 AT4G25360 30.233 172 113 4 149 316 314 482 1.38e-12 70.9
MS.gene45088.t1 AT4G25360 40.506 79 47 0 59 137 147 225 6.72e-14 74.7
MS.gene45088.t1 AT4G25360 30.233 172 113 4 149 316 314 482 1.38e-12 70.9
MS.gene45088.t1 AT5G19160 50.980 51 25 0 87 137 99 149 2.26e-11 65.9
MS.gene45088.t1 AT5G51640 49.020 51 26 0 87 137 138 188 3.03e-11 66.2
MS.gene45088.t1 AT5G19160 50.980 51 25 0 87 137 99 149 5.28e-11 65.5
MS.gene45088.t1 AT2G40320 49.057 53 26 1 86 137 80 132 5.77e-11 65.1
MS.gene45088.t1 AT2G40160 34.862 109 68 3 30 137 22 128 9.42e-11 63.9
MS.gene45088.t1 AT1G48880 47.059 51 27 0 87 137 115 165 9.45e-11 64.7

Find 134 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTCTTAATCATACTGAAAT+TGG 0.102828 5.3:-23983631 MS.gene45088:CDS
AACCAAAATGGTTATGAAAA+TGG 0.136671 5.3:-23984595 None:intergenic
CTTCTATAAGGCTTAGTCTT+TGG 0.224979 5.3:+23983460 None:intergenic
GGCACTTGATGTAACTAAAT+TGG 0.237596 5.3:-23983329 MS.gene45088:CDS
AAAGAGACCTGTTGTGTTAC+AGG 0.269323 5.3:-23974918 MS.gene45088:intron
GTGACTACTTCAATGGAAAA+TGG 0.280998 5.3:-23984197 MS.gene45088:CDS
TAAGCCTTATATTTGTAATA+TGG 0.284831 5.3:-23980138 MS.gene45088:CDS
TCCTTCTCCCTACTTCTATA+AGG 0.286857 5.3:+23983448 None:intergenic
TATAGAGGCAGTGGTGTTAA+TGG 0.295778 5.3:-23980263 MS.gene45088:CDS
AAATACAACTTATTATGATT+TGG 0.295848 5.3:+23983787 None:intergenic
CAGATGCTGATTATCTTTAC+TGG 0.310479 5.3:-23984089 MS.gene45088:CDS
CCCTCAAATCCGGCACCGTC+TGG 0.323936 5.3:-23980460 MS.gene45088:CDS
TGAAAGATGGGCAAAGGATA+TGG 0.342119 5.3:-23983752 MS.gene45088:CDS
ACTTCTACACCTCCTCCTTC+AGG 0.346683 5.3:-23984381 MS.gene45088:intron
GTGGTGGAGGGTGGTGAGTT+CGG 0.353044 5.3:+23980508 None:intergenic
GGCTTATCCTTCGGCGGATC+CGG 0.357243 5.3:+23980155 None:intergenic
ACAGCCATATTACAAATATA+AGG 0.375127 5.3:+23980134 None:intergenic
TTGTGCTTTCAATTGGTCAT+TGG 0.379558 5.3:-23983714 MS.gene45088:CDS
AAGGTGAAAGGTAGTGAATT+TGG 0.385477 5.3:-23983367 MS.gene45088:CDS
GGAAGCTCAGATTCAGTAGA+TGG 0.390311 5.3:+23984450 None:intergenic
GGTAAGTGGAGAGGTGGTGG+AGG 0.390544 5.3:+23980495 None:intergenic
ACCAAAATGGTTATGAAAAT+GGG 0.390838 5.3:-23984594 None:intergenic
CTGATTATCTTTACTGGAGA+TGG 0.393599 5.3:-23984083 MS.gene45088:CDS
TAGATCTTGTTGATGAAAGA+TGG 0.395598 5.3:-23983765 MS.gene45088:CDS
ATTGATAGGAGAGGAAATAA+AGG 0.397784 5.3:-23983559 MS.gene45088:CDS
GAATGAAATTGATCTTTGAA+TGG 0.399735 5.3:+23984561 None:intergenic
GCATCCTGCAGTTTATTATG+AGG 0.403053 5.3:-23983686 MS.gene45088:CDS
GTCTTAATCATACTGAAATT+GGG 0.403211 5.3:-23983630 MS.gene45088:CDS
CCCAGACGGTGCCGGATTTG+AGG 0.412567 5.3:+23980459 None:intergenic
AGAGGTAAGTGGAGAGGTGG+TGG 0.416599 5.3:+23980492 None:intergenic
CCAGACGGTGCCGGATTTGA+GGG 0.430587 5.3:+23980460 None:intergenic
AATGAAATTGATCTTTGAAT+GGG 0.431053 5.3:+23984562 None:intergenic
AGACTAAGCCTTATAGAAGT+AGG 0.435118 5.3:-23983456 MS.gene45088:CDS
CCCACATGTGACTACTTCAA+TGG 0.443622 5.3:-23984204 MS.gene45088:CDS
TCTCCCTTCAGGAGGGGCAT+TGG 0.444220 5.3:-23975430 MS.gene45088:intron
TGCGTCTCTGCAACAGCAGC+AGG 0.446479 5.3:+23975257 None:intergenic
TTAGGTTGTCATTATTGTGT+TGG 0.447247 5.3:-23983652 MS.gene45088:CDS
GTACTTCATCATAAATTGCC+AGG 0.447878 5.3:-23974816 MS.gene45088:CDS
CGGTGCCGGATTTGAGGGTG+TGG 0.448427 5.3:+23980465 None:intergenic
ATTTGGAGGTGTTAGGTTTG+AGG 0.452622 5.3:-23983350 MS.gene45088:CDS
CATGTTGTTCCATTGTATAA+AGG 0.454390 5.3:+23984156 None:intergenic
GAAGAAAGGGAAGAGGGTAG+AGG 0.458859 5.3:+23984472 None:intergenic
CAAATATAAGGCTTATCCTT+CGG 0.459384 5.3:+23980146 None:intergenic
TAATTCTACTCTTCCGTCGC+CGG 0.460000 5.3:-23980174 MS.gene45088:CDS
TCATTTACCTGTAACACAAC+AGG 0.460609 5.3:+23974911 None:intergenic
GGCAAAGGATATGGAAAGGA+TGG 0.461465 5.3:-23983743 MS.gene45088:CDS
TAAGGACCTGGATGACCATC+TGG 0.461971 5.3:+23983295 None:intergenic
CTTGGAAGCTTACATTCACT+TGG 0.465242 5.3:+23984057 None:intergenic
CAAGCGAGGAACTGATTTCT+CGG 0.465423 5.3:-23975390 MS.gene45088:CDS
CGCTATTGTATGCTTGCTTG+CGG 0.471189 5.3:-23980408 MS.gene45088:CDS
ATTTCTCGGATGAGTTCATC+AGG 0.474442 5.3:-23975376 MS.gene45088:CDS
AGTGGAGAGGTGGTGGAGGG+TGG 0.476304 5.3:+23980499 None:intergenic
TTGAGACCAGATGGTCATCC+AGG 0.479603 5.3:-23983301 MS.gene45088:intron
GTAGTGAATTTGGAGGTGTT+AGG 0.481475 5.3:-23983357 MS.gene45088:CDS
AACACAGTAATATACCCTTT+CGG 0.482167 5.3:+23980359 None:intergenic
TAGATGGAAGAAAGGGAAGA+GGG 0.486400 5.3:+23984466 None:intergenic
CAGTAAAGATAATCAGCATC+TGG 0.486403 5.3:+23984090 None:intergenic
CTCTTAATAGTATAATTGAT+AGG 0.494936 5.3:-23983573 MS.gene45088:CDS
GGAGAAGGAACTTGAAGGAA+TGG 0.495842 5.3:-23983434 MS.gene45088:CDS
TATAAACTAAGAAGAGCAAT+GGG 0.496592 5.3:+23984495 None:intergenic
GTGAGAAATGATGGTGGTGG+TGG 0.499849 5.3:+23984422 None:intergenic
GGTGTTGAGAAATCAAATGA+TGG 0.501614 5.3:-23983811 MS.gene45088:CDS
GATTCAGTAGATGGAAGAAA+GGG 0.502270 5.3:+23984459 None:intergenic
AGATCTTGTTGATGAAAGAT+GGG 0.502869 5.3:-23983764 MS.gene45088:CDS
CCTTCAGGAGGGGCATTGGA+TGG 0.505384 5.3:-23975426 MS.gene45088:intron
GTAGATGGAAGAAAGGGAAG+AGG 0.509775 5.3:+23984465 None:intergenic
TGAAGAAGTTGAAGATGCTA+AGG 0.511290 5.3:-23983386 MS.gene45088:CDS
AGTAGGGAGAAGGAACTTGA+AGG 0.514231 5.3:-23983439 MS.gene45088:CDS
GACTAAGCCTTATAGAAGTA+GGG 0.514785 5.3:-23983455 MS.gene45088:CDS
CCATTGAAGTAGTCACATGT+GGG 0.515482 5.3:+23984204 None:intergenic
TACACCCACACCCTCAAATC+CGG 0.516142 5.3:-23980470 MS.gene45088:CDS
GTTGAAGATGCTAAGGTGAA+AGG 0.517132 5.3:-23983379 MS.gene45088:CDS
CATTGGATGGCATCTTCTAA+AGG 0.517341 5.3:-23975413 MS.gene45088:CDS
CATCCTGCAGTTTATTATGA+GGG 0.519690 5.3:-23983685 MS.gene45088:CDS
TCCTTCGGCGGATCCGGCGA+CGG 0.520449 5.3:+23980161 None:intergenic
GTAAGTGGAGAGGTGGTGGA+GGG 0.520989 5.3:+23980496 None:intergenic
AGATTCAGTAGATGGAAGAA+AGG 0.521045 5.3:+23984458 None:intergenic
GGTGTGGGTGTAGAGGTAAG+TGG 0.523878 5.3:+23980481 None:intergenic
TGAAACAGTATTTGATTGAA+CGG 0.524045 5.3:-23980325 MS.gene45088:CDS
CCTCAAATCCGGCACCGTCT+GGG 0.525337 5.3:-23980459 MS.gene45088:CDS
TTATATTTGTAATATGGCTG+TGG 0.528854 5.3:-23980132 MS.gene45088:CDS
TACTCGAACCCAGACGGTGC+CGG 0.533171 5.3:+23980451 None:intergenic
GAGGAGTTTGATGCCGCATA+CGG 0.535175 5.3:-23980303 MS.gene45088:CDS
AGAAGAGCATAGAGAGTCCA+AGG 0.538716 5.3:+23984519 None:intergenic
GAAGAGGAAATGCAGTTGGC+TGG 0.547866 5.3:-23980230 MS.gene45088:CDS
TCCATTGAAGTAGTCACATG+TGG 0.548479 5.3:+23984203 None:intergenic
AATCTATGATGTTTCCGAAA+GGG 0.548516 5.3:-23980373 MS.gene45088:CDS
TCACCCTCATAATAAACTGC+AGG 0.549266 5.3:+23983682 None:intergenic
AGGTGTAGAGTGAGAAATGA+TGG 0.553731 5.3:+23984413 None:intergenic
GGCAGTGGTGTTAATGGTGA+TGG 0.556640 5.3:-23980257 MS.gene45088:CDS
TCCGTCGCCGGATCCGCCGA+AGG 0.561064 5.3:-23980162 MS.gene45088:CDS
ATGATGGTGGTGGTGGAATG+AGG 0.561195 5.3:+23984429 None:intergenic
ACATGTGGAACAATCAAAGA+AGG 0.566099 5.3:-23984138 MS.gene45088:CDS
GGAGGTGTAGAAGTAAAAGA+AGG 0.566419 5.3:+23984390 None:intergenic
CATTCACCTTCAAAATGAGC+TGG 0.568324 5.3:+23983502 None:intergenic
TTATACAATGGAACAACATG+TGG 0.569031 5.3:-23984153 MS.gene45088:CDS
TGTAGAGGTAAGTGGAGAGG+TGG 0.574824 5.3:+23980489 None:intergenic
GTATAAACTAAGAAGAGCAA+TGG 0.579900 5.3:+23984494 None:intergenic
GCCTTATAGAAGTAGGGAGA+AGG 0.580965 5.3:-23983449 MS.gene45088:CDS
TTGGCATTGTTGAGACCAGA+TGG 0.580975 5.3:-23983310 MS.gene45088:CDS
GGTGTAGAAGTAAAAGAAGG+AGG 0.585670 5.3:+23984393 None:intergenic
TGTTGATGAAAGATGGGCAA+AGG 0.591875 5.3:-23983758 MS.gene45088:CDS
TGGTGAGTTCGGTGTTTGTG+AGG 0.598575 5.3:+23980519 None:intergenic
ATAAAGGTCCTCTTCTATCA+CGG 0.598847 5.3:+23984172 None:intergenic
ATTTGAGGGTGTGGGTGTAG+AGG 0.599498 5.3:+23980474 None:intergenic
GGGTGTAGAGGTAAGTGGAG+AGG 0.600636 5.3:+23980486 None:intergenic
GTGTTGAGAAATCAAATGAT+GGG 0.601066 5.3:-23983810 MS.gene45088:CDS
GTGAAAGGTAGTGAATTTGG+AGG 0.602576 5.3:-23983364 MS.gene45088:CDS
GAAGGTGAATGGGATAAAGC+TGG 0.607431 5.3:-23983490 MS.gene45088:CDS
GGTGCCGGATTTGAGGGTGT+GGG 0.611079 5.3:+23980466 None:intergenic
CTGTGGATAAATCTCTCAGA+AGG 0.613736 5.3:-23980115 MS.gene45088:intron
AAATGGATCCGTGATAGAAG+AGG 0.613784 5.3:-23984180 MS.gene45088:CDS
GAATCTATGATGTTTCCGAA+AGG 0.616027 5.3:-23980374 MS.gene45088:CDS
GATGGGCAAAGGATATGGAA+AGG 0.617381 5.3:-23983747 MS.gene45088:CDS
AGAAGAGGACCTTTATACAA+TGG 0.622543 5.3:-23984165 MS.gene45088:CDS
TCTGGAGGCATACTTAAGAG+AGG 0.628606 5.3:+23975211 None:intergenic
AATAGTATAATTGATAGGAG+AGG 0.629159 5.3:-23983568 MS.gene45088:CDS
TAATGAGATGAGGAAAATTG+AGG 0.629217 5.3:-23983410 MS.gene45088:CDS
TGCATAAACGTACCTGAAGG+AGG 0.629949 5.3:+23984369 None:intergenic
GCAATCAACGTCGCCGTATG+CGG 0.630125 5.3:+23980290 None:intergenic
GAAAGAATGATGTCATAACC+TGG 0.630280 5.3:+23974798 None:intergenic
CATTGAAGTAGTCACATGTG+GGG 0.636248 5.3:+23984205 None:intergenic
TAATGGTGATGGTGAAGAAG+AGG 0.637013 5.3:-23980246 MS.gene45088:CDS
GGACAAAATTGTATCAAACA+TGG 0.637951 5.3:-23984117 MS.gene45088:CDS
AAGGAATGGATAATGAGATG+AGG 0.638112 5.3:-23983420 MS.gene45088:CDS
ATATAAGGCTTATCCTTCGG+CGG 0.652831 5.3:+23980149 None:intergenic
TGAAGAAGAGGAAATGCAGT+TGG 0.653928 5.3:-23980234 MS.gene45088:CDS
GCATCTTCTAAAGGCAAGCG+AGG 0.659909 5.3:-23975404 MS.gene45088:CDS
ACGCATTACTCGAACCCAGA+CGG 0.663940 5.3:+23980445 None:intergenic
ATTGAAGTAGTCACATGTGG+GGG 0.680101 5.3:+23984206 None:intergenic
AACAGTATTTGATTGAACGG+AGG 0.685549 5.3:-23980322 MS.gene45088:CDS
ATAAACGTACCTGAAGGAGG+AGG 0.686818 5.3:+23984372 None:intergenic
AGAGTGAGAAATGATGGTGG+TGG 0.695844 5.3:+23984419 None:intergenic
TGTAGAGTGAGAAATGATGG+TGG 0.736274 5.3:+23984416 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content


Chromosome Type Strat End Strand Name
chr5.3 gene 23974794 23984610 23974794 ID=MS.gene45088
chr5.3 mRNA 23974794 23984610 23974794 ID=MS.gene45088.t1;Parent=MS.gene45088
chr5.3 exon 23984382 23984610 23984382 ID=MS.gene45088.t1.exon1;Parent=MS.gene45088.t1
chr5.3 CDS 23984382 23984610 23984382 ID=cds.MS.gene45088.t1;Parent=MS.gene45088.t1
chr5.3 exon 23984070 23984249 23984070 ID=MS.gene45088.t1.exon2;Parent=MS.gene45088.t1
chr5.3 CDS 23984070 23984249 23984070 ID=cds.MS.gene45088.t1;Parent=MS.gene45088.t1
chr5.3 exon 23983302 23983832 23983302 ID=MS.gene45088.t1.exon3;Parent=MS.gene45088.t1
chr5.3 CDS 23983302 23983832 23983302 ID=cds.MS.gene45088.t1;Parent=MS.gene45088.t1
chr5.3 exon 23980116 23980548 23980116 ID=MS.gene45088.t1.exon4;Parent=MS.gene45088.t1
chr5.3 CDS 23980116 23980548 23980116 ID=cds.MS.gene45088.t1;Parent=MS.gene45088.t1
chr5.3 exon 23975224 23975441 23975224 ID=MS.gene45088.t1.exon5;Parent=MS.gene45088.t1
chr5.3 CDS 23975224 23975441 23975224 ID=cds.MS.gene45088.t1;Parent=MS.gene45088.t1
chr5.3 exon 23974919 23974941 23974919 ID=MS.gene45088.t1.exon6;Parent=MS.gene45088.t1
chr5.3 CDS 23974919 23974941 23974919 ID=cds.MS.gene45088.t1;Parent=MS.gene45088.t1
chr5.3 exon 23974794 23974865 23974794 ID=MS.gene45088.t1.exon7;Parent=MS.gene45088.t1
chr5.3 CDS 23974794 23974865 23974794 ID=cds.MS.gene45088.t1;Parent=MS.gene45088.t1
Gene Sequence

>MS.gene45088

ATGGTTATGAAAATGGGTATTTCAAACCCATTCAAAGATCAATTTCATTCCCTCACCAAAAAACTTTTTCCTTGGACTCTCTATGCTCTTCTTCCCATTGCTCTTCTTAGTTTATACCTCTACCCTCTTCCCTTTCTTCCATCTACTGAATCTGAGCTTCCTCATTCCACCACCACCATCATTTCTCACTCTACACCTCCTTCTTTTACTTCTACACCTCCTCCTTCAGGTACGTTTATGCATACTCTCATCTAGTTAAAAATCATGTTTTTACAAATGGGTTTTGTCTTAAATTTAGATTAGTAACTTCATATGTAAGATTTGTTGGTGTTTATAATATTTAAATGTTCTTTTATTGTAGAAAAGGAAAAAACTTTTGACACCCCCACATGTGACTACTTCAATGGAAAATGGATCCGTGATAGAAGAGGACCTTTATACAATGGAACAACATGTGGAACAATCAAAGAAGGACAAAATTGTATCAAACATGGACGACCAGATGCTGATTATCTTTACTGGAGATGGAAACCAAGTGAATGTAAGCTTCCAAGGTTTGAGCCTAACACTTTTCTTCAACTCATTGAAAACAAACACATGGCTTTTGTTGGTGATTCTATGGCTAGGAACCAGTTAGAGTCACTTCTTTGTTTGTTATCTAGTGTTTCAACACCTGATCTTGTTTACACTAGTGGTGAGGATAATAAGTTTAGAAGGTGGCATTTTGATTCTCATAATGCAAGTGTGTCGGTTTATTGGTCCCCTTTTCTTGTTCAAGGTGTTGAGAAATCAAATGATGGGCCAAATCATAATAAGTTGTATTTAGATCTTGTTGATGAAAGATGGGCAAAGGATATGGAAAGGATGGATTTTATTGTGCTTTCAATTGGTCATTGGTTTTTGCATCCTGCAGTTTATTATGAGGGTGATTCAGTTTTAGGTTGTCATTATTGTGTTGGTCTTAATCATACTGAAATTGGGTTTTATGATGTATTGAGAAAGGCTTTAAGAACTACTCTTAATAGTATAATTGATAGGAGAGGAAATAAAGGTAGTAAAATTGATGTACTAGTTACAACATTTTCACCAGCTCATTTTGAAGGTGAATGGGATAAAGCTGGTGCTTGTCCAAAGACTAAGCCTTATAGAAGTAGGGAGAAGGAACTTGAAGGAATGGATAATGAGATGAGGAAAATTGAGGTTGAAGAAGTTGAAGATGCTAAGGTGAAAGGTAGTGAATTTGGAGGTGTTAGGTTTGAGGCACTTGATGTAACTAAATTGGCATTGTTGAGACCAGATGGTCATCCAGGTCCTTATATGTATCCTTTTCCATTTGCTAATGGGGTTCCAGAGCGTGTGCAGAATGATTGTGTTCATTGGTGTTTGCCTGGACCTATAGACACATGGAATGAGATTTTTCTTGAGATTATGAAGAAATGGGAGAACAATCCAAGAACTCAAGAGTGAAGAGTTAGGTATTTAGTATTTACTATATCTTGTTTGTTAATTTTTTATTTGTTATACCTTCATATTATGGATATTGCATTGAAATAGGTCTTTGTTTTTGATAGAGAACAGAAGCAATTTCAATTGAGGAAGGATTAATTATTGTGTATTCTACTACTTTCTTGTTCTATAATAGAAAAGGAGTAAGGACTTGATTATTAAAGATATTTTATATTGGTGATGAAAAATGGTGTGAGTGACAAATGTTGGGTACTAATTAAAGACAATGATGTTTATGGAATGTGTGAAAACTAACCATTTAGAAATGTACAAAAGGGTTTAGTGGTAAACTTGTGAACTAATTCATGCAATCATGACACAATTAATGCAGCTGGTATTTTCTGTCTTACTAAAATTAGTAGCCATTCAATTTGTCTTGTAAACTTATCTTGTTTTAATTTTTTTTTTTCCTTCTAAAAATCTTGTTTTAATCTGTGTCATGCATTCTGAGTGAAAAAGAACTTGTGTCATGGATCCCATTATCTTATTTTTCTTAACCTCTTGAAATAGTGTTCAGCTAGTAGCTGTTTAACCGTGTTGACTTTCTAAATTTGTATTATGTGTCAGCTGGCTAGTAGCATCTTAATAATTTATCTGATTTTGAGTTGGCATGAATACCACTACTTGTGCCCTTAATTTATGGCTTGTGAGGTTCTGATTTTAAAGAATACTATAGTCTTGCTTTTAGCTATAATGAATTGAAGATAGTGGTTGTCTTATTTATTTCTTGTTGTCCAAATGCAGATTGTAGAGACGTTTTCAGTTTTCACCTAACCACATTTAATTTTGATACTCGAAATAATACGATTATGCCCTTAATTTCTTGATGTAATCACATCTAATTTAGAAAGTCATGCTTTATGTTAATTTTGTCAAAAAAATATTGATTCTATTTCTGCTAAACAGCATGTCTGCAGTCTAGAAAGAAAGGAAAAATTTAAGGATTCAGCTACATATATTGTGGAGTAGAAATCTTGTTGTGATGTGTTCCTACGAATTTATTCATTCAACTGCAATACAAAAAGCCAAAAGGGTACATGTACGTGTTTCTTTGGTACATTTAATTTAATATAGACGTGTTATGTGTATGTGGCTTGTGTTCGTTGAAGTCGAACAACGTTAATGTCGATTTCTCGTTAGAAATGTGATAGGGTACCAATAATACAAAAGACAGCAGCATTTCATGTTTGAACAAGCGTTTAAAATGTACTTCACTCACGGCTTCCATGTTGAATGATACATTTGTTCATCCATACATCATTAGAAAATTTATTATAATTACGAGAAAGTGAATGGCACTTTCAATAAACCAACTTTCTTTTAAGAAACTTCTATGGTGAATTCGTAAATTGAGTTGTATTGATACTTTTATTTGTTGACGTTTATATTTTAAAAATATCATTTTATAGAAAAACATCATTCAATTGTTTATATGAATTATATTAAATTTTTATATTTTATTGTAAAAAATAAACTGTATTCTCTTTATAAACGGTAGTTTATAAAATACAAAAATAAAATTTTATGTTCGAGAAAACAAAATAATAATGCAAAGATGATGATAGTATTAACTGCTTGTTTGATGTGTGTTTTGCTTTTGCAGGCTGATCAAGGTTGGAGTAATTTAAACCTCAAAATTTAAAGAGTTAAGAGAAGCATTGTATTTAGAGATCATTCATTAAATATATTTTTATGTTAACATAGGTGATAATCCAGAAGCCCTAGCTCAACTAGCAAAATGCCGAAATTGTTAGGCCGGATGTCATGACCGGGGTTCGAACCCCGGTACCTTCACTTGTGTGTGAGTTTATAATGGCTTTGCCATTTCGTCTATCTACAAAAAAAAAAAAAAAACATAGGTGATATATCGTTCACCAATAAGATCACCACGTTAATAGAGCTACTTTCCGATCACTCGTATTAAAAAAAAAAGTCATATGATACTATGTCGATATCTTTTTTATAAATAGACATACACGCACATATATTGTGTATAAATCAGATGTTATATGCAATAAATGACAAAATTCTTCCTTAAAAGATTTAACATTTTTCTATAAGTATGAACCAAAATATGAGTTTTATCGAGTATACATATGTTGAAAAAAATGTTTTTTTTTTTTTTTTCAAAAATTGGCGACGGTGGTTTTTTTTTTCTCAAACATAAAATTTTATTTTTGTATTTTATCATTTTTGATTAATAATCGGTGGGGCCACATCCTTACCAGAACACTAGTTCCAATTGGTGAACATGATGCCATGTTACTCCTCTTCTTCTCATTATCCAAACCACCACCGTCACCAATTAACACCAGAATTATTCTCTTTATTCCCACAACACAATGGCCACAGCTCTTTCAATCTCTTTTTCCTCCTTAGACCAACACAATCATAACCGCTTCAACATCATCACCACCACAACCAAAACCACTCGCCGAAATTTCTCTTTCACACCCCCACTTCCCCTCAACAAACCCCCCTTCAAACTCTACTCCTCCTCCTCCTCCTCCTCTTCCTCCCAATCCCAAACCCTAACAGATTCCTCCCTCAAACCAGGTAAATTCCTCACAAACACCGAACTCACCACCCTCCACCACCTCTCCACTTACCTCTACACCCACACCCTCAAATCCGGCACCGTCTGGGTTCGAGTAATGCGTGACAGCGAAGTAGACGCTATTGTATGCTTGCTTGCGGATTCTTTCGCTGAATCTATGATGTTTCCGAAAGGGTATATTACTGTGTTGAGATTTCTTGTGAAACAGTATTTGATTGAACGGAGGAGTTTGATGCCGCATACGGCGACGTTGATTGCGTTTTATAGAGGCAGTGGTGTTAATGGTGATGGTGAAGAAGAGGAAATGCAGTTGGCTGGTACTGTTGAGATTTCTTTTAATGTTTATGGTGCTAATTCTACTCTTCCGTCGCCGGATCCGCCGAAGGATAAGCCTTATATTTGTAATATGGCTGTGGATAAATCTCTCAGAAGGTATACAACATTGTACATGCTTTAAGGCTTGATTTGCATTTGTTAGATTAATTTGCATTTTTTTTTAAGTATGAGTAATTTTACCAATAGAATGTATAGTTGATTTGAAGAATCAATAGGGGAATTGGTGTTTGACTTTGATATTGGGAGGACTAATTAAAATAGTCTATGGATTTTACGAATTTACAATTACATCGTTAAAATTGTAGCGTGTCGGTCAAAATAGTTTATTCATTAACTTCTACTATTAGAGCTTATGACATTGCATGTTAGATGAACATGTGATCTTCCATGTGAACTCCACATTAGGAGAAATTTATGCGGCACGTTAAATTCATGCATTTGATGTCATTTAAAGACATATAGAGTGAAGACCTGTAAATTATGTAGTAAGGAAAGTAAATCAAATAGAGGATAGCCAGAGGAAGACTTAGAAGAACTATAAGATAAACTATTGAGAAATATTGATTAATGAGTTAGATCGAAATAGTGTTTATGATAGAACACTATGACGTAGTTTAATTCACGTAGCCAACCCTAGACTCGATTGCCGTTGTTAAATTTATGCATTTCATGTCAACATTAGGGCTATCACATCAGGATCCAAACACATTAACTAATTTTTAACTTATATATTTCATATTCAATTTAATCCCCATGGTGTAGGATTTACGTTGAAGACCACATATTCATTTACCATGTCATTGACAATCTAACCGTAGAAGTTATGAGAGGGACTATTTTGAATAACTCGTTACGGTTGCAGCGATGTATTTATCAAATTTGCAAAAAATTTGGACTATTTTGACTGATGCTCACAATTTCGATGATCAATTTCCCTATTCACTCTAGTTTGAATGATGAAACATGTGAATGATAAAAATAATTGAAATGTGTCAGAGTTCCCTGAACTTATTTCTCTGATAAATTTAGGAGTGTCAAGAACCATGAGGACAAATTTGACCAATATTCTGGGACTAATTTGTGTGGCTAAATGCATATTCAGGGGCTAAATGTGTTGTTTCCATTATTTAAAGATTAAGATTGCGCCTGCACGTGAATTGGTTTGTGAATAAGATACTTGAGCTTATCTATTGGAATAATAATAACCACTTGTGAGTGTGTTGAGAGCTTATGAAAATAGATTATGGCATGTTTATAGGCCAATTTCAACTTGTTTTAAGCTCTCAAGGATGGTTTATATAAACAGCTTATGACTTATATGAAAAAAATTAACCACGTTTCCTCTTTGATATTAAATATAGCTTATACATAAACATGTATTCAATAAGTGCTTAATTAAGTTGTTTATTCAAACACTCCCGGAGTGTATATAGATGTGAAAGCTAGAACTGCTAGAAGTGGGTGAAAAGGGCATTTAGAAACTTGTTTGATATTAATTTTTTACTCTTCTGCTAGGTTAAGTAGGATATTTTTTGGGTGAATGATAAAGACAGACTTGTCAGTGTTAAATACTTTCTGCAATTTTACCTTGCTTGAACTTGAACTTTTAGCACAGACAAAGTAGGGAAGTAAATTTGACTTGCTGCAATCTTACAAAAGAGAAAGTCGATGAACATTGCATCAATAGCAAAATGAGTAGTGAAACTTGCAATATAAATAATTAAGCTACATTAGTCACCATCAATGAATTTCAGATTGTAATAATGTACTCCCTCCGTCCCAAATTATTCATTTTAGTCATTTCACACAAATTATGAAATGTAATTAATTTCGTATAGGTAAGAGAAATTGTATTATTTTACAAAATTATCCTTCATTAACGGTATGAGAAAGATAAATAAAGAATTGAAAGAAGAGAGTAATAAACAGTTTATGGTATAGTAGGAAAAGTAACATTAATGTTTCATTGGTATTGTAAAACGACTTACTCCCTCCGTCCCAAATTATAAGTCACTTCGGGAAAAAAATTTGTTCCAAATTATAAGTCGCTTTATAATACCAATGAAACATTAATGTTATTTTTCCTTTTATACCATTAACTATTTATTACTCTCTTTTCTTTCAATTTGTTAATTTATCTTTTCAATACCATTAACGAAGGATAATATTGTAAAGTTATTAATAATTTCTCTTTCCAATACATAATTGATTACATTTCTTAATCTGTGTAAAATGGTCAAAATGACTTATAATTTGGGACGGAGGGAGTATAATTTGGGTCAATTTGTTTTCTCAAAGCGACTTATAATTTGGGATGGAGGGAGTACTATTTAACTAAATTAATATGTCAACTCAATGAGAGAATGACATAATCCTTGTTATAACTATTGCAACATTGTTTTGAGTATGATCCTAAATTTACCAATTTTACGAATTTACAATTACATACATCGTTAAAATTGTAGCGTGTTAGTCAAAATAGTTTATTCGTTAACTTCTACTGTTAGAGCCCATGACATCACATGTGATTTACAATTACATACATCGAGAAATATAGATTAATGAGTTGGATCGAAATAGGGTTTATGATAGAACATTATGACATAGTTTAGTTCATGTAGCCGACCCCACTTAGTGGGATAAGGCTTGATTGCCATTGTTAAATTTATGCATTTCATGTCAACATTAGGGCTATTATCACTTCAGGATCCAAACACATTAACTAATTTTTAACATATATATTTCATGTTCAATATAATCCCCATGGTGTAGGATTTACGTGGAAGACACCATGTCATTGACAATCTAACCATAGAAGTTATGAGAGGGACTATTTTGAATAACTCGTTACGATTGCAGCGATGTATTTATCAAATTTGCAAAAAATTTGGACTATTTTGACTGATGCTCACAATTTCGATGATCAATTTCCCTATTCACTTTATAGTTTGAATGATGAAACATGTGAATGATAAAAATGATTGAAATGTGTCAAGAGTTCCCTGAACTTATTTCTCTGATAAATTTAGAAGTGTCAAGAACCATGAGGACAAATTTGACCAATATAATACATACTGGGACTTATTTGTGTGGCTAAATGCATATTCAGGGGCTAAATGTGTTGTTTCCATTATTTAAAGATTAAGGTTGTGCCTACACGTGAATTGGTTTGTGAATAAGATACTTGGGCTTATCTATTGGAATAATAATAACCACTTATGAGTGTGTTGAGAGCTTATGTAAATAGTTTATGGCATGTCTATAGGCCAATTTCAACTTGTTTTAAGCTCTCAAGGATGGTTTATATAAACAGCTTATGACTTATATGAAAAAAATTAACCACGTTTCCTCTTTGATATTAAATATAGCATAGACATAAACATGTATTCAATAAGTGCTAATTTAAGTTGTTTATACAAACACTCCCGGAGCGTATATAGATGTGTAAGCTAGAACTGTTAGAAGTGGGTGAAAAGGGCATTTAGAAACTTGTTTGATATTAATTTTTTACTCTTCTGCTAGGTTAAGTAGGATATTTTTTGGGTGAATTATAAAGACAGCCTTGTTAGTTTTAAATACTTTCTGCAATATTACCTTGCTTGAACTTGAACGTTTAGCACAGACAGAGTAGGGAAATAAATTTGACTTGCTGCAATCTTACAAAAAGATGAACATTGCGTCAATAGCAAAATGAGTAGTGAAACCTGCAATATAAATAATTAAGCTACATTAGTCACCATCAATGAATTCCAAATTGTAATAATGTACTCTCTCTCTCTGTCCCAAATTATTAGTCATTTTGGTCATTTCACACAAATTAAGAAATGTAATTAATTTTGTATAGGAAAGAGAAATTTGTTATTTTACAAAATTATCCTTCATTAACGGTATGAGAAACATAAATAAAGAATTGAAAGAAGAAAATAATAAATAGTTTACGGTATAGTAGGAAAAGTAACATTAATGTTTCATTGATATTGTAAAACGACTTACTCCCTTCTTCCCAAATTATAAGTCGCTTCGGGAAAAAGATTTGTCCCAAATTATACGTCGTTTTACAATACCAATGAAACATTAATGTTATTTTTCCTTTTATACCATTAACTATTTATTACTCTTTTTTCTTTCAATTCTTTAATATATCTTTTCAATACCATTAACGATGGATAATTTTGTAAAGTTATTCATGATTTCTCTTTTCCAATACATAATTGATTACATTTCTTAATCTGTGTAAAATGGTCAAAACGACTTATAATTTGGGACGGAGGGAGTATAATTTGGGTCAATTTGTTTTCTCAAAGCGACTTATAATTTGGGATGGAGGGAGTACTATTTGACTAAATTAATATGTCAACTTTCTACCCAAAAAAATCAATATGTCAACTTTCTACCAAAAAAAATTAATATGTCAACTCAATGAGGGAATGACATAATCCTTGTTCTAACTATTATAACATTGTTTTTAGTATGATTCTAAAATTCACATAATGTTATGCTCTTGTTTTTTTTCTTTTTTTTTTTTACCTTTTCCTGTGGTCTACTTTCTTTGAGTCAATGCATGCTATGGAAAAGCCTATAATAGTAACTTTTAGCATCCAAGATTAAGATTGAGGTAACCAAAGATATATTCTCCTCCTGAAATTCTAATGGCTTGCATTTTCAAACGCTTGTTACGTCTTTTGATTAAGCAAACGAGTAAAATGCTGTGTGTCTGTTTTACACCTGAATGTAATTGGATTCTAACATTCTAAGAGTGTCTCCCTTCAGGAGGGGCATTGGATGGCATCTTCTAAAGGCAAGCGAGGAACTGATTTCTCGGATGAGTTCATCAGGAGAAGTTTACTTGCATTGCAGAATGATTGATGAAGCTCCATTTAACATGTATACAAAAGCTGATTACAAAATTGTAACGACAGATAGTATTTTAGTCCTGCTGCTGTTGCAGAGACGCAAACACTTGATGTGCAAGAAACTTCCTCTCTTAAGTATGCCTCCAGAAACAGATTTGCCATGTTCTGATGACTATGAGTAAAAGACAACATGTATGTGGTTGCTTAATATTTTGATGATGTAATATTTCCATTAACTCTTATTGTTCATAAAAGCTCAAATTTATGTCTAGCTTCCACACGCTCTTATACGCAAAATGTTTCTGTGGTTTTATGTTTTGTTTCAGCAATGGTAGCAAATATGATCGAGGTCGTTTTAAGTTTACCGAAGAATGGAGATTGGTTTCAGGAATTCTTATATATTTCTCTTATCTGTAGGAAAGAGACCTGTTGTGTTACAGGTAAATGACTAAAGAATGATTTATAAATTCTTTGTTTTCTTTATTCCTGATAGCTAAATGATGAAAAGATTGTAAAGCTTGTACTTCATCATAAATTGCCAGGTTATGACATCATTCTTTCTTGA

Protein sequence

>MS.gene45088.t1

MVMKMGISNPFKDQFHSLTKKLFPWTLYALLPIALLSLYLYPLPFLPSTESELPHSTTTIISHSTPPSFTSTPPPSEKEKTFDTPTCDYFNGKWIRDRRGPLYNGTTCGTIKEGQNCIKHGRPDADYLYWRWKPSECVEKSNDGPNHNKLYLDLVDERWAKDMERMDFIVLSIGHWFLHPAVYYEGDSVLGCHYCVGLNHTEIGFYDVLRKALRTTLNSIIDRRGNKGSKIDVLVTTFSPAHFEGEWDKAGACPKTKPYRSREKELEGMDNEMRKIEVEEVEDAKVKGSEFGGVRFEALDVTKLALLRPDGHPGKFLTNTELTTLHHLSTYLYTHTLKSGTVWVRVMRDSEVDAIVCLLADSFAESMMFPKGYITVLRFLVKQYLIERRSLMPHTATLIAFYRGSGVNGDGEEEEMQLAGTVEISFNVYGANSTLPSPDPPKDKPYICNMAVDKSLRRRGIGWHLLKASEELISRMSSSGEVYLHCRMIDEAPFNMYTKADYKIVTTDSILVLLLLQRRKHLMCKKLPLLRKRPVVLQLNDEKIVKLVLHHKLPGYDIILS