Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45088.t1 | XP_003613303.1 | 72.5 | 396 | 30 | 1 | 1 | 317 | 1 | 396 | 3.60E-160 | 575.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45088.t1 | O04523 | 42.3 | 378 | 122 | 7 | 20 | 317 | 13 | 374 | 5.9e-71 | 270.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45088.t1 | G7K2T5 | 72.5 | 396 | 30 | 1 | 1 | 317 | 1 | 396 | 2.6e-160 | 575.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene45088.t1 | TR | GNAT |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45088.t1 | MTR_5g035060 | 97.706 | 218 | 5 | 0 | 313 | 530 | 67 | 284 | 2.63e-154 | 444 |
MS.gene45088.t1 | MTR_5g035070 | 92.632 | 190 | 14 | 0 | 128 | 317 | 207 | 396 | 1.87e-122 | 368 |
MS.gene45088.t1 | MTR_5g035070 | 95.620 | 137 | 6 | 0 | 1 | 137 | 1 | 137 | 1.33e-69 | 231 |
MS.gene45088.t1 | MTR_5g035090 | 73.822 | 191 | 48 | 2 | 128 | 318 | 203 | 391 | 1.18e-94 | 296 |
MS.gene45088.t1 | MTR_5g035090 | 50.370 | 135 | 65 | 2 | 3 | 137 | 1 | 133 | 9.89e-34 | 133 |
MS.gene45088.t1 | MTR_5g035040 | 61.943 | 247 | 56 | 5 | 291 | 530 | 146 | 361 | 1.44e-91 | 286 |
MS.gene45088.t1 | MTR_5g035150 | 63.351 | 191 | 70 | 0 | 128 | 318 | 205 | 395 | 1.81e-79 | 256 |
MS.gene45088.t1 | MTR_5g035150 | 51.852 | 135 | 63 | 2 | 5 | 137 | 1 | 135 | 9.85e-35 | 136 |
MS.gene45088.t1 | MTR_5g035140 | 59.016 | 183 | 71 | 3 | 139 | 318 | 48 | 229 | 1.78e-72 | 233 |
MS.gene45088.t1 | MTR_3g109840 | 54.404 | 193 | 85 | 2 | 128 | 318 | 188 | 379 | 4.94e-67 | 223 |
MS.gene45088.t1 | MTR_3g109840 | 45.806 | 155 | 62 | 8 | 4 | 157 | 5 | 138 | 1.03e-26 | 113 |
MS.gene45088.t1 | MTR_5g035080 | 56.186 | 194 | 82 | 2 | 128 | 318 | 191 | 384 | 3.84e-66 | 221 |
MS.gene45088.t1 | MTR_5g035080 | 55.000 | 100 | 34 | 3 | 38 | 137 | 37 | 125 | 9.50e-28 | 116 |
MS.gene45088.t1 | MTR_8g104970 | 54.645 | 183 | 79 | 3 | 139 | 318 | 248 | 429 | 2.87e-65 | 220 |
MS.gene45088.t1 | MTR_8g104970 | 38.037 | 163 | 58 | 3 | 18 | 137 | 8 | 170 | 4.15e-24 | 105 |
MS.gene45088.t1 | MTR_7g033230 | 54.696 | 181 | 78 | 3 | 139 | 316 | 392 | 571 | 4.36e-60 | 210 |
MS.gene45088.t1 | MTR_7g033230 | 60.000 | 70 | 25 | 2 | 68 | 137 | 248 | 314 | 5.59e-21 | 97.4 |
MS.gene45088.t1 | MTR_7g033230 | 52.880 | 191 | 86 | 3 | 129 | 316 | 452 | 641 | 2.02e-59 | 209 |
MS.gene45088.t1 | MTR_7g033230 | 60.000 | 70 | 25 | 2 | 68 | 137 | 318 | 384 | 7.43e-21 | 97.1 |
MS.gene45088.t1 | MTR_5g035050 | 95.833 | 72 | 3 | 0 | 458 | 529 | 29 | 100 | 4.79e-41 | 144 |
MS.gene45088.t1 | MTR_6g016880 | 38.542 | 192 | 110 | 4 | 129 | 316 | 198 | 385 | 3.26e-40 | 151 |
MS.gene45088.t1 | MTR_6g016880 | 37.500 | 112 | 65 | 4 | 30 | 137 | 18 | 128 | 5.91e-15 | 77.8 |
MS.gene45088.t1 | MTR_7g019120 | 38.220 | 191 | 108 | 5 | 132 | 316 | 200 | 386 | 1.87e-36 | 141 |
MS.gene45088.t1 | MTR_7g019120 | 35.965 | 114 | 64 | 2 | 26 | 137 | 23 | 129 | 1.36e-15 | 79.7 |
MS.gene45088.t1 | MTR_8g027900 | 42.012 | 169 | 92 | 3 | 149 | 316 | 354 | 517 | 2.78e-34 | 137 |
MS.gene45088.t1 | MTR_8g027900 | 53.704 | 54 | 25 | 0 | 84 | 137 | 208 | 261 | 1.33e-13 | 73.9 |
MS.gene45088.t1 | MTR_8g099300 | 40.588 | 170 | 94 | 5 | 149 | 316 | 217 | 381 | 2.13e-32 | 129 |
MS.gene45088.t1 | MTR_8g099300 | 32.331 | 133 | 81 | 3 | 5 | 137 | 1 | 124 | 2.67e-17 | 84.7 |
MS.gene45088.t1 | MTR_6g016875 | 35.079 | 191 | 114 | 4 | 132 | 316 | 188 | 374 | 4.12e-32 | 129 |
MS.gene45088.t1 | MTR_6g016875 | 37.037 | 108 | 51 | 3 | 30 | 137 | 24 | 114 | 2.42e-15 | 79.0 |
MS.gene45088.t1 | MTR_6g007777 | 38.596 | 171 | 102 | 2 | 150 | 319 | 260 | 428 | 2.74e-31 | 127 |
MS.gene45088.t1 | MTR_6g007777 | 33.333 | 165 | 73 | 7 | 8 | 137 | 5 | 167 | 6.48e-16 | 80.9 |
MS.gene45088.t1 | MTR_5g035120 | 46.617 | 133 | 62 | 3 | 5 | 137 | 2 | 125 | 4.78e-31 | 119 |
MS.gene45088.t1 | MTR_2g016060 | 35.882 | 170 | 99 | 7 | 150 | 316 | 205 | 367 | 5.13e-27 | 113 |
MS.gene45088.t1 | MTR_4g102570 | 44.545 | 110 | 55 | 2 | 135 | 244 | 19 | 122 | 2.16e-24 | 100 |
MS.gene45088.t1 | MTR_7g019130 | 36.290 | 124 | 70 | 4 | 132 | 249 | 5 | 125 | 5.04e-19 | 84.3 |
MS.gene45088.t1 | MTR_7g019140 | 35.246 | 122 | 69 | 3 | 19 | 137 | 15 | 129 | 1.97e-18 | 83.6 |
MS.gene45088.t1 | MTR_0929s0010 | 55.102 | 49 | 22 | 0 | 87 | 135 | 79 | 127 | 1.04e-15 | 74.3 |
MS.gene45088.t1 | MTR_6g061710 | 50.980 | 51 | 25 | 0 | 87 | 137 | 167 | 217 | 1.27e-12 | 70.9 |
MS.gene45088.t1 | MTR_1g076690 | 50.980 | 51 | 25 | 0 | 87 | 137 | 223 | 273 | 1.34e-12 | 70.9 |
MS.gene45088.t1 | MTR_1g076690 | 28.324 | 173 | 115 | 5 | 148 | 316 | 361 | 528 | 4.50e-12 | 68.9 |
MS.gene45088.t1 | MTR_7g093450 | 50.980 | 51 | 25 | 0 | 87 | 137 | 248 | 298 | 3.89e-12 | 69.3 |
MS.gene45088.t1 | MTR_8g093530 | 47.059 | 51 | 27 | 0 | 87 | 137 | 90 | 140 | 2.41e-11 | 66.2 |
MS.gene45088.t1 | MTR_0136s0010 | 50.980 | 51 | 25 | 0 | 87 | 137 | 170 | 220 | 2.81e-11 | 66.6 |
MS.gene45088.t1 | MTR_7g094750 | 44.231 | 52 | 29 | 0 | 86 | 137 | 90 | 141 | 7.04e-11 | 64.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45088.t1 | AT1G24040 | 59.402 | 234 | 92 | 2 | 305 | 536 | 72 | 304 | 7.53e-92 | 285 |
MS.gene45088.t1 | AT1G24040 | 59.402 | 234 | 92 | 2 | 305 | 536 | 72 | 304 | 7.53e-92 | 285 |
MS.gene45088.t1 | AT1G24040 | 59.402 | 234 | 92 | 2 | 305 | 536 | 72 | 304 | 7.53e-92 | 285 |
MS.gene45088.t1 | AT1G70230 | 53.927 | 191 | 72 | 5 | 128 | 317 | 199 | 374 | 2.63e-57 | 197 |
MS.gene45088.t1 | AT1G70230 | 44.068 | 118 | 65 | 1 | 20 | 137 | 13 | 129 | 1.05e-26 | 113 |
MS.gene45088.t1 | AT3G02440 | 41.304 | 184 | 103 | 3 | 135 | 316 | 262 | 442 | 8.00e-38 | 146 |
MS.gene45088.t1 | AT3G02440 | 56.863 | 51 | 22 | 0 | 87 | 137 | 135 | 185 | 5.39e-14 | 75.1 |
MS.gene45088.t1 | AT3G02440 | 41.304 | 184 | 103 | 3 | 135 | 316 | 254 | 434 | 8.73e-38 | 145 |
MS.gene45088.t1 | AT3G02440 | 56.863 | 51 | 22 | 0 | 87 | 137 | 127 | 177 | 5.84e-14 | 74.7 |
MS.gene45088.t1 | AT5G15890 | 35.945 | 217 | 116 | 7 | 123 | 323 | 288 | 497 | 8.66e-36 | 141 |
MS.gene45088.t1 | AT5G15890 | 39.583 | 96 | 53 | 2 | 42 | 137 | 147 | 237 | 7.46e-15 | 77.8 |
MS.gene45088.t1 | AT5G15900 | 40.698 | 172 | 88 | 5 | 150 | 316 | 213 | 375 | 9.10e-34 | 133 |
MS.gene45088.t1 | AT5G15900 | 50.000 | 52 | 26 | 0 | 86 | 137 | 66 | 117 | 6.09e-13 | 71.2 |
MS.gene45088.t1 | AT5G15900 | 40.698 | 172 | 88 | 5 | 150 | 316 | 232 | 394 | 1.11e-33 | 133 |
MS.gene45088.t1 | AT5G15900 | 50.000 | 52 | 26 | 0 | 86 | 137 | 85 | 136 | 5.79e-13 | 71.6 |
MS.gene45088.t1 | AT1G01430 | 36.316 | 190 | 106 | 5 | 149 | 327 | 240 | 425 | 3.10e-31 | 127 |
MS.gene45088.t1 | AT1G01430 | 36.522 | 115 | 61 | 3 | 46 | 159 | 64 | 167 | 5.62e-15 | 77.8 |
MS.gene45088.t1 | AT4G01080 | 39.766 | 171 | 93 | 6 | 149 | 316 | 228 | 391 | 1.22e-30 | 125 |
MS.gene45088.t1 | AT4G01080 | 47.761 | 67 | 33 | 1 | 73 | 137 | 75 | 141 | 8.18e-15 | 77.4 |
MS.gene45088.t1 | AT4G23790 | 32.941 | 170 | 109 | 3 | 149 | 316 | 223 | 389 | 2.12e-26 | 112 |
MS.gene45088.t1 | AT4G23790 | 35.652 | 115 | 71 | 2 | 27 | 138 | 17 | 131 | 1.66e-16 | 82.4 |
MS.gene45088.t1 | AT3G28150 | 32.418 | 182 | 119 | 3 | 139 | 319 | 203 | 381 | 2.20e-25 | 108 |
MS.gene45088.t1 | AT3G28150 | 43.478 | 92 | 40 | 3 | 85 | 175 | 68 | 148 | 5.36e-17 | 84.0 |
MS.gene45088.t1 | AT4G11090 | 33.333 | 171 | 105 | 5 | 149 | 316 | 223 | 387 | 3.98e-22 | 99.8 |
MS.gene45088.t1 | AT4G11090 | 51.923 | 52 | 24 | 1 | 87 | 137 | 79 | 130 | 1.18e-13 | 73.6 |
MS.gene45088.t1 | AT4G25360 | 40.506 | 79 | 47 | 0 | 59 | 137 | 147 | 225 | 6.72e-14 | 74.7 |
MS.gene45088.t1 | AT4G25360 | 30.233 | 172 | 113 | 4 | 149 | 316 | 314 | 482 | 1.38e-12 | 70.9 |
MS.gene45088.t1 | AT4G25360 | 40.506 | 79 | 47 | 0 | 59 | 137 | 147 | 225 | 6.72e-14 | 74.7 |
MS.gene45088.t1 | AT4G25360 | 30.233 | 172 | 113 | 4 | 149 | 316 | 314 | 482 | 1.38e-12 | 70.9 |
MS.gene45088.t1 | AT5G19160 | 50.980 | 51 | 25 | 0 | 87 | 137 | 99 | 149 | 2.26e-11 | 65.9 |
MS.gene45088.t1 | AT5G51640 | 49.020 | 51 | 26 | 0 | 87 | 137 | 138 | 188 | 3.03e-11 | 66.2 |
MS.gene45088.t1 | AT5G19160 | 50.980 | 51 | 25 | 0 | 87 | 137 | 99 | 149 | 5.28e-11 | 65.5 |
MS.gene45088.t1 | AT2G40320 | 49.057 | 53 | 26 | 1 | 86 | 137 | 80 | 132 | 5.77e-11 | 65.1 |
MS.gene45088.t1 | AT2G40160 | 34.862 | 109 | 68 | 3 | 30 | 137 | 22 | 128 | 9.42e-11 | 63.9 |
MS.gene45088.t1 | AT1G48880 | 47.059 | 51 | 27 | 0 | 87 | 137 | 115 | 165 | 9.45e-11 | 64.7 |
Find 134 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGTCTTAATCATACTGAAAT+TGG | 0.102828 | 5.3:-23983631 | MS.gene45088:CDS |
AACCAAAATGGTTATGAAAA+TGG | 0.136671 | 5.3:-23984595 | None:intergenic |
CTTCTATAAGGCTTAGTCTT+TGG | 0.224979 | 5.3:+23983460 | None:intergenic |
GGCACTTGATGTAACTAAAT+TGG | 0.237596 | 5.3:-23983329 | MS.gene45088:CDS |
AAAGAGACCTGTTGTGTTAC+AGG | 0.269323 | 5.3:-23974918 | MS.gene45088:intron |
GTGACTACTTCAATGGAAAA+TGG | 0.280998 | 5.3:-23984197 | MS.gene45088:CDS |
TAAGCCTTATATTTGTAATA+TGG | 0.284831 | 5.3:-23980138 | MS.gene45088:CDS |
TCCTTCTCCCTACTTCTATA+AGG | 0.286857 | 5.3:+23983448 | None:intergenic |
TATAGAGGCAGTGGTGTTAA+TGG | 0.295778 | 5.3:-23980263 | MS.gene45088:CDS |
AAATACAACTTATTATGATT+TGG | 0.295848 | 5.3:+23983787 | None:intergenic |
CAGATGCTGATTATCTTTAC+TGG | 0.310479 | 5.3:-23984089 | MS.gene45088:CDS |
CCCTCAAATCCGGCACCGTC+TGG | 0.323936 | 5.3:-23980460 | MS.gene45088:CDS |
TGAAAGATGGGCAAAGGATA+TGG | 0.342119 | 5.3:-23983752 | MS.gene45088:CDS |
ACTTCTACACCTCCTCCTTC+AGG | 0.346683 | 5.3:-23984381 | MS.gene45088:intron |
GTGGTGGAGGGTGGTGAGTT+CGG | 0.353044 | 5.3:+23980508 | None:intergenic |
GGCTTATCCTTCGGCGGATC+CGG | 0.357243 | 5.3:+23980155 | None:intergenic |
ACAGCCATATTACAAATATA+AGG | 0.375127 | 5.3:+23980134 | None:intergenic |
TTGTGCTTTCAATTGGTCAT+TGG | 0.379558 | 5.3:-23983714 | MS.gene45088:CDS |
AAGGTGAAAGGTAGTGAATT+TGG | 0.385477 | 5.3:-23983367 | MS.gene45088:CDS |
GGAAGCTCAGATTCAGTAGA+TGG | 0.390311 | 5.3:+23984450 | None:intergenic |
GGTAAGTGGAGAGGTGGTGG+AGG | 0.390544 | 5.3:+23980495 | None:intergenic |
ACCAAAATGGTTATGAAAAT+GGG | 0.390838 | 5.3:-23984594 | None:intergenic |
CTGATTATCTTTACTGGAGA+TGG | 0.393599 | 5.3:-23984083 | MS.gene45088:CDS |
TAGATCTTGTTGATGAAAGA+TGG | 0.395598 | 5.3:-23983765 | MS.gene45088:CDS |
ATTGATAGGAGAGGAAATAA+AGG | 0.397784 | 5.3:-23983559 | MS.gene45088:CDS |
GAATGAAATTGATCTTTGAA+TGG | 0.399735 | 5.3:+23984561 | None:intergenic |
GCATCCTGCAGTTTATTATG+AGG | 0.403053 | 5.3:-23983686 | MS.gene45088:CDS |
GTCTTAATCATACTGAAATT+GGG | 0.403211 | 5.3:-23983630 | MS.gene45088:CDS |
CCCAGACGGTGCCGGATTTG+AGG | 0.412567 | 5.3:+23980459 | None:intergenic |
AGAGGTAAGTGGAGAGGTGG+TGG | 0.416599 | 5.3:+23980492 | None:intergenic |
CCAGACGGTGCCGGATTTGA+GGG | 0.430587 | 5.3:+23980460 | None:intergenic |
AATGAAATTGATCTTTGAAT+GGG | 0.431053 | 5.3:+23984562 | None:intergenic |
AGACTAAGCCTTATAGAAGT+AGG | 0.435118 | 5.3:-23983456 | MS.gene45088:CDS |
CCCACATGTGACTACTTCAA+TGG | 0.443622 | 5.3:-23984204 | MS.gene45088:CDS |
TCTCCCTTCAGGAGGGGCAT+TGG | 0.444220 | 5.3:-23975430 | MS.gene45088:intron |
TGCGTCTCTGCAACAGCAGC+AGG | 0.446479 | 5.3:+23975257 | None:intergenic |
TTAGGTTGTCATTATTGTGT+TGG | 0.447247 | 5.3:-23983652 | MS.gene45088:CDS |
GTACTTCATCATAAATTGCC+AGG | 0.447878 | 5.3:-23974816 | MS.gene45088:CDS |
CGGTGCCGGATTTGAGGGTG+TGG | 0.448427 | 5.3:+23980465 | None:intergenic |
ATTTGGAGGTGTTAGGTTTG+AGG | 0.452622 | 5.3:-23983350 | MS.gene45088:CDS |
CATGTTGTTCCATTGTATAA+AGG | 0.454390 | 5.3:+23984156 | None:intergenic |
GAAGAAAGGGAAGAGGGTAG+AGG | 0.458859 | 5.3:+23984472 | None:intergenic |
CAAATATAAGGCTTATCCTT+CGG | 0.459384 | 5.3:+23980146 | None:intergenic |
TAATTCTACTCTTCCGTCGC+CGG | 0.460000 | 5.3:-23980174 | MS.gene45088:CDS |
TCATTTACCTGTAACACAAC+AGG | 0.460609 | 5.3:+23974911 | None:intergenic |
GGCAAAGGATATGGAAAGGA+TGG | 0.461465 | 5.3:-23983743 | MS.gene45088:CDS |
TAAGGACCTGGATGACCATC+TGG | 0.461971 | 5.3:+23983295 | None:intergenic |
CTTGGAAGCTTACATTCACT+TGG | 0.465242 | 5.3:+23984057 | None:intergenic |
CAAGCGAGGAACTGATTTCT+CGG | 0.465423 | 5.3:-23975390 | MS.gene45088:CDS |
CGCTATTGTATGCTTGCTTG+CGG | 0.471189 | 5.3:-23980408 | MS.gene45088:CDS |
ATTTCTCGGATGAGTTCATC+AGG | 0.474442 | 5.3:-23975376 | MS.gene45088:CDS |
AGTGGAGAGGTGGTGGAGGG+TGG | 0.476304 | 5.3:+23980499 | None:intergenic |
TTGAGACCAGATGGTCATCC+AGG | 0.479603 | 5.3:-23983301 | MS.gene45088:intron |
GTAGTGAATTTGGAGGTGTT+AGG | 0.481475 | 5.3:-23983357 | MS.gene45088:CDS |
AACACAGTAATATACCCTTT+CGG | 0.482167 | 5.3:+23980359 | None:intergenic |
TAGATGGAAGAAAGGGAAGA+GGG | 0.486400 | 5.3:+23984466 | None:intergenic |
CAGTAAAGATAATCAGCATC+TGG | 0.486403 | 5.3:+23984090 | None:intergenic |
CTCTTAATAGTATAATTGAT+AGG | 0.494936 | 5.3:-23983573 | MS.gene45088:CDS |
GGAGAAGGAACTTGAAGGAA+TGG | 0.495842 | 5.3:-23983434 | MS.gene45088:CDS |
TATAAACTAAGAAGAGCAAT+GGG | 0.496592 | 5.3:+23984495 | None:intergenic |
GTGAGAAATGATGGTGGTGG+TGG | 0.499849 | 5.3:+23984422 | None:intergenic |
GGTGTTGAGAAATCAAATGA+TGG | 0.501614 | 5.3:-23983811 | MS.gene45088:CDS |
GATTCAGTAGATGGAAGAAA+GGG | 0.502270 | 5.3:+23984459 | None:intergenic |
AGATCTTGTTGATGAAAGAT+GGG | 0.502869 | 5.3:-23983764 | MS.gene45088:CDS |
CCTTCAGGAGGGGCATTGGA+TGG | 0.505384 | 5.3:-23975426 | MS.gene45088:intron |
GTAGATGGAAGAAAGGGAAG+AGG | 0.509775 | 5.3:+23984465 | None:intergenic |
TGAAGAAGTTGAAGATGCTA+AGG | 0.511290 | 5.3:-23983386 | MS.gene45088:CDS |
AGTAGGGAGAAGGAACTTGA+AGG | 0.514231 | 5.3:-23983439 | MS.gene45088:CDS |
GACTAAGCCTTATAGAAGTA+GGG | 0.514785 | 5.3:-23983455 | MS.gene45088:CDS |
CCATTGAAGTAGTCACATGT+GGG | 0.515482 | 5.3:+23984204 | None:intergenic |
TACACCCACACCCTCAAATC+CGG | 0.516142 | 5.3:-23980470 | MS.gene45088:CDS |
GTTGAAGATGCTAAGGTGAA+AGG | 0.517132 | 5.3:-23983379 | MS.gene45088:CDS |
CATTGGATGGCATCTTCTAA+AGG | 0.517341 | 5.3:-23975413 | MS.gene45088:CDS |
CATCCTGCAGTTTATTATGA+GGG | 0.519690 | 5.3:-23983685 | MS.gene45088:CDS |
TCCTTCGGCGGATCCGGCGA+CGG | 0.520449 | 5.3:+23980161 | None:intergenic |
GTAAGTGGAGAGGTGGTGGA+GGG | 0.520989 | 5.3:+23980496 | None:intergenic |
AGATTCAGTAGATGGAAGAA+AGG | 0.521045 | 5.3:+23984458 | None:intergenic |
GGTGTGGGTGTAGAGGTAAG+TGG | 0.523878 | 5.3:+23980481 | None:intergenic |
TGAAACAGTATTTGATTGAA+CGG | 0.524045 | 5.3:-23980325 | MS.gene45088:CDS |
CCTCAAATCCGGCACCGTCT+GGG | 0.525337 | 5.3:-23980459 | MS.gene45088:CDS |
TTATATTTGTAATATGGCTG+TGG | 0.528854 | 5.3:-23980132 | MS.gene45088:CDS |
TACTCGAACCCAGACGGTGC+CGG | 0.533171 | 5.3:+23980451 | None:intergenic |
GAGGAGTTTGATGCCGCATA+CGG | 0.535175 | 5.3:-23980303 | MS.gene45088:CDS |
AGAAGAGCATAGAGAGTCCA+AGG | 0.538716 | 5.3:+23984519 | None:intergenic |
GAAGAGGAAATGCAGTTGGC+TGG | 0.547866 | 5.3:-23980230 | MS.gene45088:CDS |
TCCATTGAAGTAGTCACATG+TGG | 0.548479 | 5.3:+23984203 | None:intergenic |
AATCTATGATGTTTCCGAAA+GGG | 0.548516 | 5.3:-23980373 | MS.gene45088:CDS |
TCACCCTCATAATAAACTGC+AGG | 0.549266 | 5.3:+23983682 | None:intergenic |
AGGTGTAGAGTGAGAAATGA+TGG | 0.553731 | 5.3:+23984413 | None:intergenic |
GGCAGTGGTGTTAATGGTGA+TGG | 0.556640 | 5.3:-23980257 | MS.gene45088:CDS |
TCCGTCGCCGGATCCGCCGA+AGG | 0.561064 | 5.3:-23980162 | MS.gene45088:CDS |
ATGATGGTGGTGGTGGAATG+AGG | 0.561195 | 5.3:+23984429 | None:intergenic |
ACATGTGGAACAATCAAAGA+AGG | 0.566099 | 5.3:-23984138 | MS.gene45088:CDS |
GGAGGTGTAGAAGTAAAAGA+AGG | 0.566419 | 5.3:+23984390 | None:intergenic |
CATTCACCTTCAAAATGAGC+TGG | 0.568324 | 5.3:+23983502 | None:intergenic |
TTATACAATGGAACAACATG+TGG | 0.569031 | 5.3:-23984153 | MS.gene45088:CDS |
TGTAGAGGTAAGTGGAGAGG+TGG | 0.574824 | 5.3:+23980489 | None:intergenic |
GTATAAACTAAGAAGAGCAA+TGG | 0.579900 | 5.3:+23984494 | None:intergenic |
GCCTTATAGAAGTAGGGAGA+AGG | 0.580965 | 5.3:-23983449 | MS.gene45088:CDS |
TTGGCATTGTTGAGACCAGA+TGG | 0.580975 | 5.3:-23983310 | MS.gene45088:CDS |
GGTGTAGAAGTAAAAGAAGG+AGG | 0.585670 | 5.3:+23984393 | None:intergenic |
TGTTGATGAAAGATGGGCAA+AGG | 0.591875 | 5.3:-23983758 | MS.gene45088:CDS |
TGGTGAGTTCGGTGTTTGTG+AGG | 0.598575 | 5.3:+23980519 | None:intergenic |
ATAAAGGTCCTCTTCTATCA+CGG | 0.598847 | 5.3:+23984172 | None:intergenic |
ATTTGAGGGTGTGGGTGTAG+AGG | 0.599498 | 5.3:+23980474 | None:intergenic |
GGGTGTAGAGGTAAGTGGAG+AGG | 0.600636 | 5.3:+23980486 | None:intergenic |
GTGTTGAGAAATCAAATGAT+GGG | 0.601066 | 5.3:-23983810 | MS.gene45088:CDS |
GTGAAAGGTAGTGAATTTGG+AGG | 0.602576 | 5.3:-23983364 | MS.gene45088:CDS |
GAAGGTGAATGGGATAAAGC+TGG | 0.607431 | 5.3:-23983490 | MS.gene45088:CDS |
GGTGCCGGATTTGAGGGTGT+GGG | 0.611079 | 5.3:+23980466 | None:intergenic |
CTGTGGATAAATCTCTCAGA+AGG | 0.613736 | 5.3:-23980115 | MS.gene45088:intron |
AAATGGATCCGTGATAGAAG+AGG | 0.613784 | 5.3:-23984180 | MS.gene45088:CDS |
GAATCTATGATGTTTCCGAA+AGG | 0.616027 | 5.3:-23980374 | MS.gene45088:CDS |
GATGGGCAAAGGATATGGAA+AGG | 0.617381 | 5.3:-23983747 | MS.gene45088:CDS |
AGAAGAGGACCTTTATACAA+TGG | 0.622543 | 5.3:-23984165 | MS.gene45088:CDS |
TCTGGAGGCATACTTAAGAG+AGG | 0.628606 | 5.3:+23975211 | None:intergenic |
AATAGTATAATTGATAGGAG+AGG | 0.629159 | 5.3:-23983568 | MS.gene45088:CDS |
TAATGAGATGAGGAAAATTG+AGG | 0.629217 | 5.3:-23983410 | MS.gene45088:CDS |
TGCATAAACGTACCTGAAGG+AGG | 0.629949 | 5.3:+23984369 | None:intergenic |
GCAATCAACGTCGCCGTATG+CGG | 0.630125 | 5.3:+23980290 | None:intergenic |
GAAAGAATGATGTCATAACC+TGG | 0.630280 | 5.3:+23974798 | None:intergenic |
CATTGAAGTAGTCACATGTG+GGG | 0.636248 | 5.3:+23984205 | None:intergenic |
TAATGGTGATGGTGAAGAAG+AGG | 0.637013 | 5.3:-23980246 | MS.gene45088:CDS |
GGACAAAATTGTATCAAACA+TGG | 0.637951 | 5.3:-23984117 | MS.gene45088:CDS |
AAGGAATGGATAATGAGATG+AGG | 0.638112 | 5.3:-23983420 | MS.gene45088:CDS |
ATATAAGGCTTATCCTTCGG+CGG | 0.652831 | 5.3:+23980149 | None:intergenic |
TGAAGAAGAGGAAATGCAGT+TGG | 0.653928 | 5.3:-23980234 | MS.gene45088:CDS |
GCATCTTCTAAAGGCAAGCG+AGG | 0.659909 | 5.3:-23975404 | MS.gene45088:CDS |
ACGCATTACTCGAACCCAGA+CGG | 0.663940 | 5.3:+23980445 | None:intergenic |
ATTGAAGTAGTCACATGTGG+GGG | 0.680101 | 5.3:+23984206 | None:intergenic |
AACAGTATTTGATTGAACGG+AGG | 0.685549 | 5.3:-23980322 | MS.gene45088:CDS |
ATAAACGTACCTGAAGGAGG+AGG | 0.686818 | 5.3:+23984372 | None:intergenic |
AGAGTGAGAAATGATGGTGG+TGG | 0.695844 | 5.3:+23984419 | None:intergenic |
TGTAGAGTGAGAAATGATGG+TGG | 0.736274 | 5.3:+23984416 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.3 | gene | 23974794 | 23984610 | 23974794 | ID=MS.gene45088 |
chr5.3 | mRNA | 23974794 | 23984610 | 23974794 | ID=MS.gene45088.t1;Parent=MS.gene45088 |
chr5.3 | exon | 23984382 | 23984610 | 23984382 | ID=MS.gene45088.t1.exon1;Parent=MS.gene45088.t1 |
chr5.3 | CDS | 23984382 | 23984610 | 23984382 | ID=cds.MS.gene45088.t1;Parent=MS.gene45088.t1 |
chr5.3 | exon | 23984070 | 23984249 | 23984070 | ID=MS.gene45088.t1.exon2;Parent=MS.gene45088.t1 |
chr5.3 | CDS | 23984070 | 23984249 | 23984070 | ID=cds.MS.gene45088.t1;Parent=MS.gene45088.t1 |
chr5.3 | exon | 23983302 | 23983832 | 23983302 | ID=MS.gene45088.t1.exon3;Parent=MS.gene45088.t1 |
chr5.3 | CDS | 23983302 | 23983832 | 23983302 | ID=cds.MS.gene45088.t1;Parent=MS.gene45088.t1 |
chr5.3 | exon | 23980116 | 23980548 | 23980116 | ID=MS.gene45088.t1.exon4;Parent=MS.gene45088.t1 |
chr5.3 | CDS | 23980116 | 23980548 | 23980116 | ID=cds.MS.gene45088.t1;Parent=MS.gene45088.t1 |
chr5.3 | exon | 23975224 | 23975441 | 23975224 | ID=MS.gene45088.t1.exon5;Parent=MS.gene45088.t1 |
chr5.3 | CDS | 23975224 | 23975441 | 23975224 | ID=cds.MS.gene45088.t1;Parent=MS.gene45088.t1 |
chr5.3 | exon | 23974919 | 23974941 | 23974919 | ID=MS.gene45088.t1.exon6;Parent=MS.gene45088.t1 |
chr5.3 | CDS | 23974919 | 23974941 | 23974919 | ID=cds.MS.gene45088.t1;Parent=MS.gene45088.t1 |
chr5.3 | exon | 23974794 | 23974865 | 23974794 | ID=MS.gene45088.t1.exon7;Parent=MS.gene45088.t1 |
chr5.3 | CDS | 23974794 | 23974865 | 23974794 | ID=cds.MS.gene45088.t1;Parent=MS.gene45088.t1 |
Gene Sequence |
Protein sequence |