AlfalfaGEDB | MS.gene45139

M. sativa cultivar XinJiangDaYe / MS.gene45139

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45139.t1	XP_003613381.1	96.2	52	2	0	73	124	511	562	5.20E-19	104

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45139.t1	Q9M2S4	74.5	51	13	0	74	124	513	563	4.6e-16	85.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45139.t1	G7K494	96.2	52	2	0	73	124	511	562	3.7e-19	104.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45139.t1	MTR_5g035910	96.154	52	2	0	73	124	511	562	4.12e-27	104
MS.gene45139.t1	MTR_5g035910	83.333	60	9	1	1	60	613	671	1.01e-25	100
MS.gene45139.t1	MTR_7g063030	92.308	52	4	0	73	124	508	559	9.06e-27	103
MS.gene45139.t1	MTR_7g063030	92.308	52	4	0	73	124	502	553	3.59e-26	102
MS.gene45139.t1	MTR_7g063010	88.462	52	6	0	73	124	504	555	7.72e-25	98.2
MS.gene45139.t1	MTR_7g063010	54.098	61	27	1	1	60	606	666	2.40e-11	59.7
MS.gene45139.t1	MTR_3g068025	84.615	52	8	0	73	124	514	565	1.48e-23	94.7
MS.gene45139.t1	MTR_7g062950	65.385	52	18	0	73	124	506	557	9.57e-16	72.4
MS.gene45139.t1	MTR_1g052275	63.462	52	19	0	73	124	508	559	1.86e-15	71.6
MS.gene45139.t1	MTR_7g062990	61.111	54	19	1	73	124	512	565	2.34e-15	71.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45139.t1	AT3G55550	73.077	52	14	0	73	124	512	563	3.86e-20	85.1
MS.gene45139.t1	AT1G70110	65.385	52	18	0	73	124	509	560	9.28e-19	80.9
MS.gene45139.t1	AT3G59740	65.385	52	18	0	73	124	502	553	3.24e-18	79.3
MS.gene45139.t1	AT2G37710	67.925	53	16	1	73	124	512	564	2.37e-17	77.0
MS.gene45139.t1	AT1G70130	59.615	52	21	0	73	124	499	550	4.49e-17	76.3
MS.gene45139.t1	AT3G59750	63.462	52	19	0	73	124	469	520	6.64e-17	75.9
MS.gene45139.t1	AT4G02420	69.231	52	15	1	74	124	516	567	1.21e-16	75.1
MS.gene45139.t1	AT4G29050	62.264	53	19	1	73	124	509	561	3.19e-16	73.9
MS.gene45139.t1	AT4G29050	62.264	53	19	1	73	124	523	575	3.26e-16	73.9
MS.gene45139.t1	AT3G59700	59.615	52	21	0	73	124	504	555	5.76e-16	73.2

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Find 31 sgRNAs with CRISPR-Local

Find 59 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGTTCCCACCACTCTTG+TGG	0.545636	5.1:+26633067	None:intergenic
AAGAGTTAGTGTTTGTGGAC+TGG	0.531353	5.1:-26632916	MS.gene45139:CDS
AATTCATCAAACACATGTTG+TGG	0.538666	5.1:+26633781	None:intergenic
ACAAGAAGAGTTAGTGTTTG+TGG	0.392340	5.1:-26632921	MS.gene45139:CDS
ACAAGTGATGATGAGGATTT+TGG	0.230179	5.1:-26633854	None:intergenic
ACCTTTAGGCTATTTGGCAC+CGG	0.525213	5.1:-26633050	MS.gene45139:CDS
AGAGTTAGTGTTTGTGGACT+GGG	0.448490	5.1:-26632915	MS.gene45139:CDS
AGTGTTTGTGGACTGGGTGT+AGG	0.546562	5.1:-26632909	None:intergenic
ATGAACATGGTGCTAATCCA+GGG	0.605499	5.1:-26633091	MS.gene45139:CDS
ATTTGGTGCACTTCTGCTTG+AGG	0.507190	5.1:-26632981	MS.gene45139:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTCATCAAACACATGTTG+TGG	+	chr5.1:26632976-26632995	None:intergenic	30.0%
GAATGCATTCAATCAAATCA+TGG	-	chr5.1:26633222-26633241	MS.gene45139:intron	30.0%
GGAAAAGAAACTTGAGATAA+CGG	+	chr5.1:26633444-26633463	None:intergenic	30.0%
TGAACTCATGATATCAATTG+AGG	+	chr5.1:26633019-26633038	None:intergenic	30.0%
ACAAGAAGAGTTAGTGTTTG+TGG	-	chr5.1:26633833-26633852	MS.gene45139:CDS	35.0%
CCTGAATTACTCAAATCATC+AGG	+	chr5.1:26632943-26632962	None:intergenic	35.0%
CCTGATGATTTGAGTAATTC+AGG	-	chr5.1:26632940-26632959	MS.gene45139:CDS	35.0%
CTAGGATTAAGAAGTGATAG+AGG	+	chr5.1:26633102-26633121	None:intergenic	35.0%
CTTGTCATCCTTTCTTAGTT+GGG	-	chr5.1:26633595-26633614	MS.gene45139:intron	35.0%
TCTTGTCATCCTTTCTTAGT+TGG	-	chr5.1:26633594-26633613	MS.gene45139:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	26632910	26633866	26632910	ID=MS.gene45139
chr5.1	mRNA	26632910	26633866	26632910	ID=MS.gene45139.t1;Parent=MS.gene45139
chr5.1	exon	26633701	26633866	26633701	ID=MS.gene45139.t1.exon1;Parent=MS.gene45139.t1
chr5.1	CDS	26633701	26633866	26633701	ID=cds.MS.gene45139.t1;Parent=MS.gene45139.t1
chr5.1	exon	26632910	26633118	26632910	ID=MS.gene45139.t1.exon2;Parent=MS.gene45139.t1
chr5.1	CDS	26632910	26633118	26632910	ID=cds.MS.gene45139.t1;Parent=MS.gene45139.t1

Gene Sequence

>MS.gene45139

ATGAGGATTTTGGATGGAGAAGTTGAGTTGCCTGATGATTTGAGTAATTCAGGAGTTATTGATCCACAACATGTGTTTGATGAATTTTTGGACTCTCTTGCATATTCCTCAATTGATATCATGAGTTCAAGCTCTTATCTTGAAAATAGATATACTGATGGAACTTGTAATATATCTTTTGAGAATTCACCTCTATCACTTCTTAATCCTAGAGAAGAAGCAAGGTGACCTATACATTTTACATTTTACATGCCCATGGTTCGCTGACTTCGCTCCTTGTATAGAATAAAAAAATGGATATACTTTTTCTAGGAATGCATTCAATCAAATCATGGTATGTAGATAGTGAAGATACTTTAGTAACAAACTTATTAAAGTAACACTACGATGCGATTGGATCCAAGTCAAAAAACAGTTTTGCGACGTCGGTGTATATCAATTAATCTCATCAAAATATGTAAATATGTAATGTAACAAAAAAAAAAAAAAAACCAAAAATATGTAAGAAAACAAAATTCCGCTTTACAAAGACCGTTATCTCAAGTTTCTTTTCCCAATAAGTTTATATTCATGTATGTATATTGACCTAATCTCAAGTCAATGTTCATTAGTCTAAGAAAGAAAGAAAAAAAGACTAGCAGCAAATCACATCTTTTGGATTTTTCCAATTTTTCATTTATGATTTCTTGTCATCCTTTCTTAGTTGGGACATACAAACTTCAAACTTAGTTGATTTTGGTTTGGCAAGGTTATATGAACATGGTGCTAATCCAGGGACCACAAGAGTGGTGGGAACCTTTAGGCTATTTGGCACCGGAGTTGCCTAGAACAGGAAGAGCATCTACGAGTTCAGACGTTTTTGCATTTGGTGCACTTCTGCTTGAGGTTGCTTGTGGGAGAAGGCCTATTGAGTCTAAGGCATTACAAGAAGAGTTAGTGTTTGTGGACTGGGTGTAG

Protein sequence

>MS.gene45139.t1

MRILDGEVELPDDLSNSGVIDPQHVFDEFLDSLAYSSIDIMSSSSYLENRYTDGTCYMNMVLIQGPQEWWEPLGYLAPELPRTGRASTSSDVFAFGALLLEVACGRRPIESKALQEELVFVDWV