AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene45201

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45201.t1 MTR_3g075270 91.531 307 26 0 1 307 1 307 0.0 570
MS.gene45201.t1 MTR_4g104140 55.957 277 119 2 8 281 59 335 2.25e-112 330
MS.gene45201.t1 MTR_4g104140 56.471 255 108 2 30 281 11 265 9.29e-103 303
MS.gene45201.t1 MTR_5g015680 39.062 256 155 1 7 261 13 268 8.30e-66 208
MS.gene45201.t1 MTR_5g015680 39.062 256 155 1 7 261 108 363 9.19e-65 208
MS.gene45201.t1 MTR_5g015680 39.062 256 155 1 7 261 147 402 2.89e-64 208
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45201.t1 AT3G48360 49.446 271 126 3 8 267 80 350 4.01e-86 263
MS.gene45201.t1 AT5G63160 48.322 298 142 4 3 291 65 359 8.74e-84 257
MS.gene45201.t1 AT3G48360 50.820 244 109 3 35 267 1 244 5.84e-77 236
MS.gene45201.t1 AT3G48360 50.633 237 107 2 8 234 80 316 8.10e-77 238
MS.gene45201.t1 AT5G63160 50.000 240 112 2 3 234 65 304 7.47e-76 234
MS.gene45201.t1 AT5G63160 49.259 270 125 4 31 291 8 274 1.87e-75 233
MS.gene45201.t1 AT4G37610 39.535 258 151 5 7 261 96 351 6.31e-59 193
MS.gene45201.t1 AT5G67480 38.911 257 153 4 8 261 102 357 6.69e-58 191
MS.gene45201.t1 AT5G67480 38.911 257 153 4 8 261 102 357 6.69e-58 191
MS.gene45201.t1 AT5G67480 38.911 257 153 4 8 261 113 368 8.46e-58 191
MS.gene45201.t1 AT1G05690 38.489 278 163 5 5 278 91 364 3.98e-57 188

Find 78 sgRNAs with CRISPR-Local

Find 120 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCACCGCTTCAAAATTAT+TGG 0.124222 3.1:+62095003 None:intergenic
CTCCACATGTCAAGCTTTGC+AGG 0.259755 3.1:-62094660 MS.gene45201:CDS
AATGCACCTTTGCTTTAGTT+TGG 0.301923 3.1:+62095132 None:intergenic
CATGCAAGGTTCCTCTTTGC+AGG 0.308788 3.1:-62094523 MS.gene45201:intron
TACATTTCATCTACACTTCC+AGG 0.332926 3.1:-62095431 MS.gene45201:intron
ACACACTTTAAGTAGAGATT+TGG 0.333717 3.1:+62095037 None:intergenic
CATTCCCCGTGGTCATGAAT+TGG 0.355331 3.1:+62095098 None:intergenic
ATCATATGATGTGGAGATTA+CGG 0.355897 3.1:-62094702 MS.gene45201:CDS
AAGTGAAGCTGTACAATGTT+TGG 0.366740 3.1:-62094759 MS.gene45201:CDS
ATGCACCTTTGCTTTAGTTT+GGG 0.372763 3.1:+62095133 None:intergenic
AACACTTTACCACATGTAAT+AGG 0.401202 3.1:-62094628 MS.gene45201:CDS
AGTCAAGAGAGTCTTCTAAT+TGG 0.402862 3.1:-62093740 MS.gene45201:CDS
TCATATGATGTGGAGATTAC+GGG 0.403872 3.1:-62094701 MS.gene45201:CDS
TGGGACTATGCAGGTGCAGC+AGG 0.411993 3.1:-62095213 MS.gene45201:intron
CCTTGTCCTTAGCAATTGTA+AGG 0.421710 3.1:+62093809 None:intergenic
CAAGGAGAGATGAGGTAATT+CGG 0.427024 3.1:-62093791 MS.gene45201:CDS
GAGGAACCTTGCATGCATCT+TGG 0.458524 3.1:+62094531 None:intergenic
GAAGAGAGGAAATAAACATA+GGG 0.473780 3.1:-62094807 MS.gene45201:CDS
AGAAGAGAGGAAATAAACAT+AGG 0.475467 3.1:-62094808 MS.gene45201:CDS
GAATACTAGAGTAGAGGAAG+AGG 0.495047 3.1:-62093769 MS.gene45201:CDS
CAAGAGAGTCTTCTAATTGG+TGG 0.514114 3.1:-62093737 MS.gene45201:CDS
AACGGTAACGTTAAAATATG+TGG 0.514946 3.1:-62095483 MS.gene45201:CDS
AAGGCGATGGCTGCATTGGT+TGG 0.517717 3.1:+62095456 None:intergenic
TCCACATGTCAAGCTTTGCA+GGG 0.524594 3.1:-62094659 MS.gene45201:CDS
TTGATCCAATTCATGACCAC+GGG 0.542240 3.1:-62095103 MS.gene45201:CDS
TATTGCATAAACATGACCCT+TGG 0.542900 3.1:-62094961 MS.gene45201:CDS
TACGAGGTGGAAACAAATAG+TGG 0.546964 3.1:-62093862 MS.gene45201:CDS
TACAAAGGCGATGGCTGCAT+TGG 0.548314 3.1:+62095452 None:intergenic
CCTTACAATTGCTAAGGACA+AGG 0.552243 3.1:-62093809 MS.gene45201:CDS
TCTCAACAAAGAACGAGAAT+CGG 0.559033 3.1:-62094918 MS.gene45201:intron
ATTCTCGTTCTTTGTTGAGA+CGG 0.562147 3.1:+62094921 None:intergenic
TGTCTTCCTTACAATTGCTA+AGG 0.563853 3.1:-62093815 MS.gene45201:CDS
CCACATGTCAAGCTTTGCAG+GGG 0.564441 3.1:-62094658 MS.gene45201:CDS
GATAGCTGAGAAAGAGAACA+AGG 0.575893 3.1:-62093892 MS.gene45201:CDS
ATGATGTCAACTTCGAGCCA+AGG 0.576653 3.1:+62094944 None:intergenic
ATTCATGACCACGGGGAATG+TGG 0.583872 3.1:-62095095 MS.gene45201:CDS
TTGGAGCATATATGTACAGA+AGG 0.585859 3.1:-62094740 MS.gene45201:CDS
TGTAATAGGAGACTCGAGAG+AGG 0.587137 3.1:-62094614 MS.gene45201:CDS
TGATGTCAACTTCGAGCCAA+GGG 0.587603 3.1:+62094945 None:intergenic
AAAGAAATGGTAACGTCCAA+CGG 0.587929 3.1:-62095501 None:intergenic
TGTGGTGGACGTGTTGCACT+TGG 0.589909 3.1:-62095077 MS.gene45201:CDS
ACGAGGTGGAAACAAATAGT+GGG 0.591901 3.1:-62093861 MS.gene45201:CDS
CCCCTGCAAAGCTTGACATG+TGG 0.598401 3.1:+62094658 None:intergenic
TGTTTCGCATACCTGCAAAG+AGG 0.600432 3.1:+62094512 None:intergenic
CAATGCCCAAACTAAAGCAA+AGG 0.601233 3.1:-62095138 MS.gene45201:CDS
TTGTAAGGAAGACATGGCTA+TGG 0.601532 3.1:+62093824 None:intergenic
GAAGCGGTGAAGGAAACAGA+GGG 0.603513 3.1:-62094992 MS.gene45201:CDS
GCTGAGAAAGAGAACAAGGA+AGG 0.604375 3.1:-62093888 MS.gene45201:CDS
CAACGTGGCATCATATGATG+TGG 0.607548 3.1:-62094711 MS.gene45201:CDS
AATTCGGAATACTAGAGTAG+AGG 0.608608 3.1:-62093775 MS.gene45201:CDS
CTCGAGTCTCCTATTACATG+TGG 0.612075 3.1:+62094619 None:intergenic
GGAGACTCGAGAGAGGGTGT+AGG 0.617740 3.1:-62094607 MS.gene45201:CDS
GAGAGGAAATAAACATAGGG+AGG 0.621519 3.1:-62094804 MS.gene45201:CDS
CTTGATCCAATTCATGACCA+CGG 0.630679 3.1:-62095104 MS.gene45201:CDS
CATATGATGTGGAGATTACG+GGG 0.632166 3.1:-62094700 MS.gene45201:CDS
CATGACCACGGGGAATGTGG+TGG 0.632280 3.1:-62095092 MS.gene45201:CDS
TAGCAATTGTAAGGAAGACA+TGG 0.634002 3.1:+62093818 None:intergenic
GTAGGTGTTGTAAGTCTATG+TGG 0.636359 3.1:-62094589 MS.gene45201:CDS
GTGAAACAGAGGAAGAAGAG+AGG 0.641073 3.1:-62094821 MS.gene45201:intron
CGGTGAAGGAAACAGAGGGG+TGG 0.647649 3.1:-62094988 MS.gene45201:CDS
AGTGTAGATGAAATGTACAA+AGG 0.647924 3.1:+62095437 None:intergenic
GCTAAGGACAAGGAGAGATG+AGG 0.655281 3.1:-62093799 MS.gene45201:CDS
GGGACTATGCAGGTGCAGCA+GGG 0.659269 3.1:-62095212 MS.gene45201:intron
ACAAGGAAGGTGATACGAGG+TGG 0.662953 3.1:-62093875 MS.gene45201:CDS
CATGTGGAGAATTTAGTACA+CGG 0.664071 3.1:+62094674 None:intergenic
CACATCATATGATGCCACGT+TGG 0.666948 3.1:+62094712 None:intergenic
GATGAAATGTACAAAGGCGA+TGG 0.667885 3.1:+62095443 None:intergenic
GTAATAGGAGACTCGAGAGA+GGG 0.668774 3.1:-62094613 MS.gene45201:CDS
TGAAGCGGTGAAGGAAACAG+AGG 0.678822 3.1:-62094993 MS.gene45201:CDS
TACAGAAGGTTGCACCAACG+TGG 0.692512 3.1:-62094726 MS.gene45201:CDS
CGAGGTGGAAACAAATAGTG+GGG 0.698764 3.1:-62093860 MS.gene45201:CDS
CACGTCCACCACATTCCCCG+TGG 0.707824 3.1:+62095087 None:intergenic
AGACGTGCGAGAGTACGAGA+AGG 0.721408 3.1:+62095164 None:intergenic
ACTATGCAGGTGCAGCAGGG+AGG 0.723689 3.1:-62095209 MS.gene45201:intron
AGAACAAGGAAGGTGATACG+AGG 0.743284 3.1:-62093878 MS.gene45201:CDS
ATGATGTGGAGATTACGGGG+AGG 0.765492 3.1:-62094697 MS.gene45201:CDS
AAGCGGTGAAGGAAACAGAG+GGG 0.769201 3.1:-62094991 MS.gene45201:CDS
TGATCCAATTCATGACCACG+GGG 0.774666 3.1:-62095102 MS.gene45201:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATTTCTTTAATAAGT+TGG - chr3.1:62094348-62094367 MS.gene45201:intron 10.0%
!!! AATTGAATTAACAAATTTTT+TGG - chr3.1:62093839-62093858 MS.gene45201:CDS 10.0%
!!! CATTTTTTCATATAAAAAAA+AGG - chr3.1:62094738-62094757 MS.gene45201:CDS 10.0%
!!! GTTATTAATCGTTATTATTT+TGG - chr3.1:62094843-62094862 MS.gene45201:intron 15.0%
!! GGTTAATAAAGCTATATTTA+CGG - chr3.1:62095261-62095280 MS.gene45201:intron 20.0%
!!! TAGTTACTAGTTTTCATTTA+GGG - chr3.1:62095233-62095252 MS.gene45201:intron 20.0%
! AAACAAATAATAACTACAGC+TGG - chr3.1:62094763-62094782 MS.gene45201:CDS 25.0%
! TGACTAATTGAGGAATATAA+TGG - chr3.1:62094941-62094960 MS.gene45201:CDS 25.0%
!! GGTCTAAATACATCAATTTT+CGG - chr3.1:62093860-62093879 MS.gene45201:CDS 25.0%
!!! AGTTACCAATAATTTTGAAG+CGG - chr3.1:62094191-62094210 MS.gene45201:intron 25.0%
!!! CTTTGAAATTAACCATCAAT+GGG - chr3.1:62095012-62095031 MS.gene45201:CDS 25.0%
!!! GTAGTTACTAGTTTTCATTT+AGG - chr3.1:62095232-62095251 MS.gene45201:intron 25.0%
!!! TAGTTTTCATTTAGGGTATT+TGG - chr3.1:62095240-62095259 MS.gene45201:intron 25.0%
!!! TTCTTTAATAAGTTGGTGAT+CGG - chr3.1:62094355-62094374 MS.gene45201:intron 25.0%
AACACTTTACCACATGTAAT+AGG - chr3.1:62094571-62094590 MS.gene45201:CDS 30.0%
AACGGTAACGTTAAAATATG+TGG - chr3.1:62093716-62093735 MS.gene45201:CDS 30.0%
AAGTAGCAATTGACTAATTG+AGG - chr3.1:62094931-62094950 MS.gene45201:CDS 30.0%
ACACACTTTAAGTAGAGATT+TGG + chr3.1:62094165-62094184 None:intergenic 30.0%
AGAAGAGAGGAAATAAACAT+AGG - chr3.1:62094391-62094410 MS.gene45201:intron 30.0%
AGGGAGGATATGAAAAATTA+TGG - chr3.1:62094006-62094025 MS.gene45201:intron 30.0%
AGTGTAGATGAAATGTACAA+AGG + chr3.1:62093765-62093784 None:intergenic 30.0%
ATAGTCCCAATCAATTCTTA+GGG + chr3.1:62093975-62093994 None:intergenic 30.0%
ATCATATGATGTGGAGATTA+CGG - chr3.1:62094497-62094516 MS.gene45201:intron 30.0%
CACTTGACAAAAAAAGACAA+TGG - chr3.1:62093946-62093965 MS.gene45201:intron 30.0%
GAAGAGAGGAAATAAACATA+GGG - chr3.1:62094392-62094411 MS.gene45201:intron 30.0%
GACTAACTCACTAAAATGTT+TGG + chr3.1:62095185-62095204 None:intergenic 30.0%
TAATTTCACTATTACTGACC+TGG + chr3.1:62093789-62093808 None:intergenic 30.0%
TATATTTACGGAAATGTGAC+AGG - chr3.1:62095273-62095292 MS.gene45201:intron 30.0%
TTGTATGATATACCCATTGA+TGG + chr3.1:62095027-62095046 None:intergenic 30.0%
! CAAATGCAATTGCATGTTTT+CGG - chr3.1:62095486-62095505 MS.gene45201:CDS 30.0%
! CCATTGATGGTTAATTTCAA+AGG + chr3.1:62095014-62095033 None:intergenic 30.0%
!! CCTTTGAAATTAACCATCAA+TGG - chr3.1:62095011-62095030 MS.gene45201:CDS 30.0%
!! GGCATATTTTTACATTCGTT+GGG - chr3.1:62095075-62095094 MS.gene45201:CDS 30.0%
!! TCTTTAATAAGTTGGTGATC+GGG - chr3.1:62094356-62094375 MS.gene45201:intron 30.0%
!! TGGCATATTTTTACATTCGT+TGG - chr3.1:62095074-62095093 MS.gene45201:CDS 30.0%
!!! ACATATTTTAACGTTACCGT+TGG + chr3.1:62093717-62093736 None:intergenic 30.0%
!!! CATTGTCTTTTTTTGTCAAG+TGG + chr3.1:62093948-62093967 None:intergenic 30.0%
AAGTGAAGCTGTACAATGTT+TGG - chr3.1:62094440-62094459 MS.gene45201:intron 35.0%
AATGCACCTTTGCTTTAGTT+TGG + chr3.1:62094070-62094089 None:intergenic 35.0%
AATTCGGAATACTAGAGTAG+AGG - chr3.1:62095424-62095443 MS.gene45201:intron 35.0%
ACAAAGTGACAAAACCAACA+CGG - chr3.1:62095101-62095120 MS.gene45201:CDS 35.0%
AGTCAAGAGAGTCTTCTAAT+TGG - chr3.1:62095459-62095478 MS.gene45201:CDS 35.0%
ATAATGTATACGTACCGTGT+TGG + chr3.1:62095118-62095137 None:intergenic 35.0%
ATTCTCGTTCTTTGTTGAGA+CGG + chr3.1:62094281-62094300 None:intergenic 35.0%
CACGGTACGTATACATTATA+TGG - chr3.1:62095119-62095138 MS.gene45201:CDS 35.0%
CATAGTCCCAATCAATTCTT+AGG + chr3.1:62093976-62093995 None:intergenic 35.0%
CATGTGGAGAATTTAGTACA+CGG + chr3.1:62094528-62094547 None:intergenic 35.0%
CTTCACCGCTTCAAAATTAT+TGG + chr3.1:62094199-62094218 None:intergenic 35.0%
TACATTTCATCTACACTTCC+AGG - chr3.1:62093768-62093787 MS.gene45201:CDS 35.0%
TAGCAATTGTAAGGAAGACA+TGG + chr3.1:62095384-62095403 None:intergenic 35.0%
TATTGCATAAACATGACCCT+TGG - chr3.1:62094238-62094257 MS.gene45201:intron 35.0%
TCATATGATGTGGAGATTAC+GGG - chr3.1:62094498-62094517 MS.gene45201:intron 35.0%
TCTCAACAAAGAACGAGAAT+CGG - chr3.1:62094281-62094300 MS.gene45201:intron 35.0%
TGTCTTCCTTACAATTGCTA+AGG - chr3.1:62095384-62095403 MS.gene45201:intron 35.0%
TTGGAGCATATATGTACAGA+AGG - chr3.1:62094459-62094478 MS.gene45201:intron 35.0%
! ATGCACCTTTGCTTTAGTTT+GGG + chr3.1:62094069-62094088 None:intergenic 35.0%
! TTTTAACCAAGATGCATGCA+AGG - chr3.1:62094662-62094681 MS.gene45201:CDS 35.0%
! TTTTTGTCAAGTGGATGAGT+GGG + chr3.1:62093939-62093958 None:intergenic 35.0%
!!! CAATAATTTTGAAGCGGTGA+AGG - chr3.1:62094197-62094216 MS.gene45201:intron 35.0%
!!! TTTTTTGTCAAGTGGATGAG+TGG + chr3.1:62093940-62093959 None:intergenic 35.0%
ACGAGGTGGAAACAAATAGT+GGG - chr3.1:62095338-62095357 MS.gene45201:intron 40.0%
AGAATTGATTGGGACTATGC+AGG - chr3.1:62093977-62093996 MS.gene45201:intron 40.0%
CAAGAGAGTCTTCTAATTGG+TGG - chr3.1:62095462-62095481 MS.gene45201:CDS 40.0%
CAAGGAGAGATGAGGTAATT+CGG - chr3.1:62095408-62095427 MS.gene45201:intron 40.0%
CAATGCCCAAACTAAAGCAA+AGG - chr3.1:62094061-62094080 MS.gene45201:intron 40.0%
CATATGATGTGGAGATTACG+GGG - chr3.1:62094499-62094518 MS.gene45201:intron 40.0%
CATGTAGCTAACTACTAACG+TGG - chr3.1:62095054-62095073 MS.gene45201:CDS 40.0%
CCTTACAATTGCTAAGGACA+AGG - chr3.1:62095390-62095409 MS.gene45201:intron 40.0%
CCTTGTCCTTAGCAATTGTA+AGG + chr3.1:62095393-62095412 None:intergenic 40.0%
CTTGATCCAATTCATGACCA+CGG - chr3.1:62094095-62094114 MS.gene45201:intron 40.0%
GAATACTAGAGTAGAGGAAG+AGG - chr3.1:62095430-62095449 MS.gene45201:intron 40.0%
GAGAGGAAATAAACATAGGG+AGG - chr3.1:62094395-62094414 MS.gene45201:intron 40.0%
GATAGCTGAGAAAGAGAACA+AGG - chr3.1:62095307-62095326 MS.gene45201:intron 40.0%
GATGAAATGTACAAAGGCGA+TGG + chr3.1:62093759-62093778 None:intergenic 40.0%
GGTGACCCTAAGAATTGATT+GGG - chr3.1:62093967-62093986 MS.gene45201:intron 40.0%
TACGAGGTGGAAACAAATAG+TGG - chr3.1:62095337-62095356 MS.gene45201:intron 40.0%
TGGTGACCCTAAGAATTGAT+TGG - chr3.1:62093966-62093985 MS.gene45201:intron 40.0%
TTGATCCAATTCATGACCAC+GGG - chr3.1:62094096-62094115 MS.gene45201:intron 40.0%
TTGTAAGGAAGACATGGCTA+TGG + chr3.1:62095378-62095397 None:intergenic 40.0%
! GTAGGTGTTGTAAGTCTATG+TGG - chr3.1:62094610-62094629 MS.gene45201:CDS 40.0%
AGAACAAGGAAGGTGATACG+AGG - chr3.1:62095321-62095340 MS.gene45201:intron 45.0%
ATGATGTCAACTTCGAGCCA+AGG + chr3.1:62094258-62094277 None:intergenic 45.0%
CAACGTGGCATCATATGATG+TGG - chr3.1:62094488-62094507 MS.gene45201:intron 45.0%
CACATCATATGATGCCACGT+TGG + chr3.1:62094490-62094509 None:intergenic 45.0%
CGAGGTGGAAACAAATAGTG+GGG - chr3.1:62095339-62095358 MS.gene45201:intron 45.0%
CTCGAGTCTCCTATTACATG+TGG + chr3.1:62094583-62094602 None:intergenic 45.0%
GCTGAGAAAGAGAACAAGGA+AGG - chr3.1:62095311-62095330 MS.gene45201:intron 45.0%
GTAATAGGAGACTCGAGAGA+GGG - chr3.1:62094586-62094605 MS.gene45201:CDS 45.0%
GTGAAACAGAGGAAGAAGAG+AGG - chr3.1:62094378-62094397 MS.gene45201:intron 45.0%
TCCACATGTCAAGCTTTGCA+GGG - chr3.1:62094540-62094559 MS.gene45201:CDS 45.0%
TGATCCAATTCATGACCACG+GGG - chr3.1:62094097-62094116 MS.gene45201:intron 45.0%
TGATGTCAACTTCGAGCCAA+GGG + chr3.1:62094257-62094276 None:intergenic 45.0%
TGTAATAGGAGACTCGAGAG+AGG - chr3.1:62094585-62094604 MS.gene45201:CDS 45.0%
TGTTTCGCATACCTGCAAAG+AGG + chr3.1:62094690-62094709 None:intergenic 45.0%
AAGCGGTGAAGGAAACAGAG+GGG - chr3.1:62094208-62094227 MS.gene45201:intron 50.0%
ACAAGGAAGGTGATACGAGG+TGG - chr3.1:62095324-62095343 MS.gene45201:intron 50.0%
ATGATGTGGAGATTACGGGG+AGG - chr3.1:62094502-62094521 MS.gene45201:intron 50.0%
ATTCATGACCACGGGGAATG+TGG - chr3.1:62094104-62094123 MS.gene45201:intron 50.0%
CATGCAAGGTTCCTCTTTGC+AGG - chr3.1:62094676-62094695 MS.gene45201:CDS 50.0%
CATTCCCCGTGGTCATGAAT+TGG + chr3.1:62094104-62094123 None:intergenic 50.0%
CCACATGTCAAGCTTTGCAG+GGG - chr3.1:62094541-62094560 MS.gene45201:CDS 50.0%
CTCCACATGTCAAGCTTTGC+AGG - chr3.1:62094539-62094558 MS.gene45201:CDS 50.0%
GAAGCGGTGAAGGAAACAGA+GGG - chr3.1:62094207-62094226 MS.gene45201:intron 50.0%
GAGGAACCTTGCATGCATCT+TGG + chr3.1:62094671-62094690 None:intergenic 50.0%
GCTAAGGACAAGGAGAGATG+AGG - chr3.1:62095400-62095419 MS.gene45201:intron 50.0%
TACAAAGGCGATGGCTGCAT+TGG + chr3.1:62093750-62093769 None:intergenic 50.0%
TACAGAAGGTTGCACCAACG+TGG - chr3.1:62094473-62094492 MS.gene45201:intron 50.0%
TGAAGCGGTGAAGGAAACAG+AGG - chr3.1:62094206-62094225 MS.gene45201:intron 50.0%
! TTGGTGATCGGGTGAAACAG+AGG - chr3.1:62094367-62094386 MS.gene45201:intron 50.0%
CCCCTGCAAAGCTTGACATG+TGG + chr3.1:62094544-62094563 None:intergenic 55.0%
! AAGGCGATGGCTGCATTGGT+TGG + chr3.1:62093746-62093765 None:intergenic 55.0%
! AGACGTGCGAGAGTACGAGA+AGG + chr3.1:62094038-62094057 None:intergenic 55.0%
!! TGTGGTGGACGTGTTGCACT+TGG - chr3.1:62094122-62094141 MS.gene45201:intron 55.0%
ACTATGCAGGTGCAGCAGGG+AGG - chr3.1:62093990-62094009 MS.gene45201:intron 60.0%
CATGACCACGGGGAATGTGG+TGG - chr3.1:62094107-62094126 MS.gene45201:intron 60.0%
CGGTGAAGGAAACAGAGGGG+TGG - chr3.1:62094211-62094230 MS.gene45201:intron 60.0%
GGGACTATGCAGGTGCAGCA+GGG - chr3.1:62093987-62094006 MS.gene45201:intron 60.0%
TGGGACTATGCAGGTGCAGC+AGG - chr3.1:62093986-62094005 MS.gene45201:intron 60.0%
! GGAGACTCGAGAGAGGGTGT+AGG - chr3.1:62094592-62094611 MS.gene45201:CDS 60.0%
CACGTCCACCACATTCCCCG+TGG + chr3.1:62094115-62094134 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 62093704 62095517 62093704 ID=MS.gene45201
chr3.1 mRNA 62093704 62095517 62093704 ID=MS.gene45201.t1;Parent=MS.gene45201
chr3.1 exon 62095432 62095517 62095432 ID=MS.gene45201.t1.exon1;Parent=MS.gene45201.t1
chr3.1 CDS 62095432 62095517 62095432 ID=cds.MS.gene45201.t1;Parent=MS.gene45201.t1
chr3.1 exon 62094919 62095222 62094919 ID=MS.gene45201.t1.exon2;Parent=MS.gene45201.t1
chr3.1 CDS 62094919 62095222 62094919 ID=cds.MS.gene45201.t1;Parent=MS.gene45201.t1
chr3.1 exon 62094524 62094834 62094524 ID=MS.gene45201.t1.exon3;Parent=MS.gene45201.t1
chr3.1 CDS 62094524 62094834 62094524 ID=cds.MS.gene45201.t1;Parent=MS.gene45201.t1
chr3.1 exon 62093704 62093926 62093704 ID=MS.gene45201.t1.exon4;Parent=MS.gene45201.t1
chr3.1 CDS 62093704 62093926 62093704 ID=cds.MS.gene45201.t1;Parent=MS.gene45201.t1
Gene Sequence

>MS.gene45201

ATGGTAACGTCCAACGGTAACGTTAAAATATGTGGTGTTCCAACCAATGCAGCCATCGCCTTTGTACATTTCATCTACACTTCCAGGTCAGTAATAGTGAAATTAAATAACTACTCATTTTTACGTAGAAAAGAAAATTGAATTAACAAATTTTTTGGTCTAAATACATCAATTTTCGGTTACTCAATTTTCTGTCATATTTAGAACAAAGAGAGTAGTATTATACTTTTTTCCCACTCATCCACTTGACAAAAAAAGACAATGGTGACCCTAAGAATTGATTGGGACTATGCAGGTGCAGCAGGGAGGATATGAAAAATTATGGAATACACCTTCTCGTACTCTCGCACGTCTTTGCAATGCCCAAACTAAAGCAAAGGTGCATTGTTGACTTGATCCAATTCATGACCACGGGGAATGTGGTGGACGTGTTGCACTTGGCTAAGCTTTGTGATGCACCAAATCTCTACTTAAAGTGTGTCAAGTTAGTTACCAATAATTTTGAAGCGGTGAAGGAAACAGAGGGGTGGAAATTATTGCATAAACATGACCCTTGGCTCGAAGTTGACATCATCCGTCTCAACAAAGAACGAGAATCGGTAAATAATAATCATTTTATTAAAATTCAGTAATTATATTTTATTTATATATTTCTTTAATAAGTTGGTGATCGGGTGAAACAGAGGAAGAAGAGAGGAAATAAACATAGGGAGGAACAAAAGTTGTTTGTGCAATTAAGTGAAGCTGTACAATGTTTGGAGCATATATGTACAGAAGGTTGCACCAACGTGGCATCATATGATGTGGAGATTACGGGGAGGCCGTGTACTAAATTCTCCACATGTCAAGCTTTGCAGGGGTTGATCAAACACTTTACCACATGTAATAGGAGACTCGAGAGAGGGTGTAGGTGTTGTAAGTCTATGTGGCAACTACTTAGACTGCACTCTTGCATTTGTTTTAACCAAGATGCATGCAAGGTTCCTCTTTGCAGGTATGCGAAACAATAATTAAAATTATGCATTTTTTCATTACATTTTTTCATATAAAAAAAAGGAAAAACAAATAATAACTACAGCTGGTCTTTGTCATATAATTTTTTTTTATATTTTATTTATATGTTTTTTGTGCTTAGTATTGTTATTAATCGTTATTATTTTGGATAAAGTATTTATATTAGTTTTTATTCTTTTTGTACAAAGTGTTGTTATTATTATTATTTTTGTTAAGTAGCAATTGACTAATTGAGGAATATAATGGTTTTTCATGTGATCAATTAAATTAAAGTGAATATGCAAACAAATTAACCTTTGAAATTAACCATCAATGGGTATATCATACAAAGAAATACATGTAGCTAACTACTAACGTGGCATATTTTTACATTCGTTGGGTGCACAAAGTGACAAAACCAACACGGTACGTATACATTATATGGTAATTGCATCTGTCTTCAATATCGTGAGCATGCATGCATGCCAAACATTTTAGTGAGTTAGTCATTGACTAATTATTTGTCTTAATTCTTGTAGTTACTAGTTTTCATTTAGGGTATTTGGTTAATAAAGCTATATTTACGGAAATGTGACAGGAAATATCAATTGATAGCTGAGAAAGAGAACAAGGAAGGTGATACGAGGTGGAAACAAATAGTGGGGAAAGTAGCATCAACCATAGCCATGTCTTCCTTACAATTGCTAAGGACAAGGAGAGATGAGGTAATTCGGAATACTAGAGTAGAGGAAGAGGAAGATCAGTCAAGAGAGTCTTCTAATTGGTGGACAAATGCAATTGCATGTTTTCGGTGTATCTAA
Protein sequence

>MS.gene45201.t1

MVTSNGNVKICGVPTNAAIAFVHFIYTSRCSREDMKNYGIHLLVLSHVFAMPKLKQRCIVDLIQFMTTGNVVDVLHLAKLCDAPNLYLKCVKLVTNNFEAVKETEGWKLLHKHDPWLEVDIIRLNKERESRKKRGNKHREEQKLFVQLSEAVQCLEHICTEGCTNVASYDVEITGRPCTKFSTCQALQGLIKHFTTCNRRLERGCRCCKSMWQLLRLHSCICFNQDACKVPLCRKYQLIAEKENKEGDTRWKQIVGKVASTIAMSSLQLLRTRRDEVIRNTRVEEEEDQSRESSNWWTNAIACFRCI