Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45343.t1 | XP_027191856.1 | 80.1 | 221 | 38 | 3 | 1 | 218 | 22 | 239 | 1.80E-96 | 362.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45343.t1 | Q8GZA8 | 67.6 | 219 | 66 | 2 | 1 | 218 | 23 | 237 | 4.8e-85 | 315.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45343.t1 | A0A3Q7Y2C3 | 80.1 | 221 | 38 | 3 | 1 | 218 | 22 | 239 | 1.3e-96 | 362.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene45343.t1 | TF | ULT |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45343.t1 | MTR_0072s0040 | 87.215 | 219 | 23 | 2 | 1 | 218 | 25 | 239 | 6.02e-135 | 378 |
| MS.gene45343.t1 | MTR_2g090080 | 70.320 | 219 | 60 | 2 | 1 | 218 | 22 | 236 | 7.20e-106 | 305 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45343.t1 | AT4G28190 | 67.580 | 219 | 66 | 2 | 1 | 218 | 23 | 237 | 2.05e-103 | 298 |
| MS.gene45343.t1 | AT4G28190 | 60.400 | 250 | 63 | 3 | 1 | 218 | 23 | 268 | 6.02e-100 | 291 |
| MS.gene45343.t1 | AT2G20825 | 63.470 | 219 | 69 | 3 | 1 | 218 | 19 | 227 | 9.09e-96 | 279 |
Find 45 sgRNAs with CRISPR-Local
Find 244 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTGACCAACCCGGCCATTT+TGG | 0.182520 | 4.3:-54197403 | None:intergenic |
| AATATCTGGGTTATAATTAA+TGG | 0.255756 | 4.3:+54197299 | MS.gene45343:CDS |
| GCACTTCTTGTGTGTGCTTC+GGG | 0.294039 | 4.3:+54199307 | MS.gene45343:CDS |
| TGCACTTCTTGTGTGTGCTT+CGG | 0.308806 | 4.3:+54199306 | MS.gene45343:CDS |
| GGAAATGGAAGAATAATATC+TGG | 0.324881 | 4.3:+54197285 | MS.gene45343:CDS |
| ATGAGTTTGTTCGCTGTACT+AGG | 0.392965 | 4.3:+54197429 | MS.gene45343:CDS |
| ATGCTGTGTCAGATGCAAAT+TGG | 0.397171 | 4.3:+54197510 | MS.gene45343:CDS |
| GGCTCTCAGAGATCCCAAAA+TGG | 0.420579 | 4.3:+54197389 | MS.gene45343:CDS |
| GGTTATAATTAATGGTGATA+AGG | 0.431324 | 4.3:+54197307 | MS.gene45343:CDS |
| GAAGAGAGACAGCAAGGAAA+TGG | 0.432232 | 4.3:+54197270 | MS.gene45343:CDS |
| GAATAAACGTACTTCTCATA+TGG | 0.434948 | 4.3:-54197548 | None:intergenic |
| TTTAAACTGGCAGTGTACTT+TGG | 0.441453 | 4.3:+54196594 | MS.gene45343:intron |
| CAAGTGGCGAAAGCTGCTAA+TGG | 0.441867 | 4.3:+54197368 | MS.gene45343:CDS |
| AAGAGCTGAGAGAAATGAGT+GGG | 0.458242 | 4.3:+54195377 | None:intergenic |
| TAATGGTGATAAGGTTCCAT+TGG | 0.460779 | 4.3:+54197316 | MS.gene45343:CDS |
| AACCTTTGCACGTTGGTGAT+CGG | 0.474249 | 4.3:-54199284 | None:intergenic |
| CTCAGAGATCCCAAAATGGC+CGG | 0.484048 | 4.3:+54197393 | MS.gene45343:CDS |
| AATGGTGATAAGGTTCCATT+GGG | 0.489767 | 4.3:+54197317 | MS.gene45343:CDS |
| TGGTAAAGTCAGTACAAGTC+TGG | 0.500731 | 4.3:-54199362 | None:intergenic |
| ATTTCGTCTGAGATCTAAAG+AGG | 0.537276 | 4.3:+54197469 | MS.gene45343:CDS |
| GGCCGATCACCAACGTGCAA+AGG | 0.545531 | 4.3:+54199282 | MS.gene45343:CDS |
| AGATCCCAAAATGGCCGGGT+TGG | 0.546651 | 4.3:+54197398 | MS.gene45343:CDS |
| GAGTGTTTCTCAAATGCAGC+AGG | 0.552189 | 4.3:-54197245 | None:intergenic |
| CACATTGCAGGATGGTGTCA+AGG | 0.566118 | 4.3:+54196630 | MS.gene45343:CDS |
| TCAGAGATCCCAAAATGGCC+GGG | 0.567774 | 4.3:+54197394 | MS.gene45343:CDS |
| GAAATGGAAGAATAATATCT+GGG | 0.580008 | 4.3:+54197286 | MS.gene45343:CDS |
| CGAAGAGTTTACAGAGGATG+CGG | 0.588649 | 4.3:+54199261 | MS.gene45343:CDS |
| GCTGCATTTGAGAAACACTC+TGG | 0.595645 | 4.3:+54197248 | MS.gene45343:CDS |
| TTGCATCTGACACAGCATCA+TGG | 0.597955 | 4.3:-54197505 | None:intergenic |
| GGGTGTACTAGTCATAGATA+TGG | 0.599115 | 4.3:+54195436 | MS.gene45343:CDS |
| ACTCATCGCGGTGACCAACC+CGG | 0.606791 | 4.3:-54197412 | None:intergenic |
| AGAGCTGAGAGAAATGAGTG+GGG | 0.614369 | 4.3:+54195378 | None:intergenic |
| CATAGATATGGTGATGCTGT+TGG | 0.619627 | 4.3:+54195448 | MS.gene45343:CDS |
| GCTCAAATACTACAATCAAG+TGG | 0.629351 | 4.3:+54197352 | MS.gene45343:CDS |
| ACACAGCATCATGGTGAATG+CGG | 0.634639 | 4.3:-54197496 | None:intergenic |
| TTGTTTGCCACATTGCAGGA+TGG | 0.646537 | 4.3:+54196622 | MS.gene45343:CDS |
| GAAGAGCTGAGAGAAATGAG+TGG | 0.646981 | 4.3:+54195376 | None:intergenic |
| GGAAGTCGAAGAGTTTACAG+AGG | 0.668670 | 4.3:+54199255 | MS.gene45343:CDS |
| ACTCTGGAAGAGAGACAGCA+AGG | 0.669740 | 4.3:+54197264 | MS.gene45343:CDS |
| GAAGTGCAACCTTTGCACGT+TGG | 0.672088 | 4.3:-54199291 | None:intergenic |
| GAATATGTTGAAGTCACGTG+TGG | 0.677819 | 4.3:+54195415 | MS.gene45343:CDS |
| AATATGTTGAAGTCACGTGT+GGG | 0.722833 | 4.3:+54195416 | MS.gene45343:CDS |
| CTTGACACCATCCTGCAATG+TGG | 0.742513 | 4.3:-54196629 | None:intergenic |
| TGTGATGATGAAGAAGAACG+AGG | 0.758234 | 4.3:+54199234 | MS.gene45343:CDS |
| TACAGCGAACAAACTCATCG+CGG | 0.760016 | 4.3:-54197424 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACAAAATCATAAATTAT+TGG | - | chr4.3:54197011-54197030 | None:intergenic | 10.0% |
| !! | AAATAAAAATAAAATAAGTG+AGG | + | chr4.3:54197619-54197638 | MS.gene45343:intron | 10.0% |
| !! | AATATATAATCTTTGAATTT+GGG | + | chr4.3:54197969-54197988 | MS.gene45343:intron | 10.0% |
| !! | TAATATATAATCTTTGAATT+TGG | + | chr4.3:54197968-54197987 | MS.gene45343:intron | 10.0% |
| !! | TTATAGATATTTATATCATT+TGG | + | chr4.3:54198935-54198954 | MS.gene45343:intron | 10.0% |
| !!! | AATAATTTATGATTTTGTTT+TGG | + | chr4.3:54197010-54197029 | MS.gene45343:intron | 10.0% |
| !!! | CTTCTTTTATTTATATTTTT+AGG | - | chr4.3:54196826-54196845 | None:intergenic | 10.0% |
| !!! | TTTTTCAAATTAAATTATGA+AGG | - | chr4.3:54196744-54196763 | None:intergenic | 10.0% |
| !! | AAATGTAGAAGATTTATAAT+TGG | + | chr4.3:54195923-54195942 | MS.gene45343:intron | 15.0% |
| !! | ATTGAAATATCAAATGATAA+TGG | - | chr4.3:54198816-54198835 | None:intergenic | 15.0% |
| !!! | TCTAAATATATGTCATTTTT+GGG | - | chr4.3:54199180-54199199 | None:intergenic | 15.0% |
| !!! | TTCTAAATATATGTCATTTT+TGG | - | chr4.3:54199181-54199200 | None:intergenic | 15.0% |
| !!! | TTTATTTTTGACCAAATTTA+TGG | + | chr4.3:54198903-54198922 | MS.gene45343:intron | 15.0% |
| !!! | TTTTATTGGTAATTTGTTAT+TGG | + | chr4.3:54198463-54198482 | MS.gene45343:intron | 15.0% |
| !! | AAAACTAATAGCCATAAATT+TGG | - | chr4.3:54198917-54198936 | None:intergenic | 20.0% |
| !! | AAAAGAAAAGACCAAATTTA+TGG | - | chr4.3:54198127-54198146 | None:intergenic | 20.0% |
| !! | AACATCATATGCAAAAATTA+AGG | - | chr4.3:54197203-54197222 | None:intergenic | 20.0% |
| !! | AATATCTGGGTTATAATTAA+TGG | + | chr4.3:54197299-54197318 | MS.gene45343:CDS | 20.0% |
| !! | AATTTGAAAAATCAACAACT+TGG | + | chr4.3:54196753-54196772 | MS.gene45343:intron | 20.0% |
| !! | ACATGGAAAAAAATATACAA+TGG | - | chr4.3:54197080-54197099 | None:intergenic | 20.0% |
| !! | ATATGACTAATTATTGAATG+TGG | + | chr4.3:54196914-54196933 | MS.gene45343:intron | 20.0% |
| !! | ATTATAAAAGACTCAGAATT+TGG | + | chr4.3:54199018-54199037 | MS.gene45343:intron | 20.0% |
| !! | ATTTGAAAAATCAACAACTT+GGG | + | chr4.3:54196754-54196773 | MS.gene45343:intron | 20.0% |
| !! | CAAATTAAATTATGAAGGTA+TGG | - | chr4.3:54196739-54196758 | None:intergenic | 20.0% |
| !! | GATTAGTAATTAATATCCTA+AGG | + | chr4.3:54196112-54196131 | MS.gene45343:intron | 20.0% |
| !! | TACTTGAACATTGATATATA+CGG | + | chr4.3:54196502-54196521 | MS.gene45343:intron | 20.0% |
| !! | TCAATAATTAGTCATATAGA+CGG | - | chr4.3:54196911-54196930 | None:intergenic | 20.0% |
| !! | TTACATATAAGTAGTGTTAA+TGG | + | chr4.3:54197156-54197175 | MS.gene45343:intron | 20.0% |
| !! | TTATAAAAGACTCAGAATTT+GGG | + | chr4.3:54199019-54199038 | MS.gene45343:intron | 20.0% |
| !! | TTATAGATTAACAATACCTT+AGG | - | chr4.3:54196131-54196150 | None:intergenic | 20.0% |
| !! | TTGTGAGATTAAATTCAATA+TGG | + | chr4.3:54195958-54195977 | MS.gene45343:intron | 20.0% |
| !!! | AATCTTTTGCATAAAATTTC+AGG | + | chr4.3:54198429-54198448 | MS.gene45343:intron | 20.0% |
| !!! | AGGGATGAAATATATTTTAT+TGG | + | chr4.3:54198449-54198468 | MS.gene45343:intron | 20.0% |
| !!! | ATAATTGATAGTCTTAATCT+AGG | + | chr4.3:54198216-54198235 | MS.gene45343:intron | 20.0% |
| !!! | ATCTTTTGCATAAAATTTCA+GGG | + | chr4.3:54198430-54198449 | MS.gene45343:intron | 20.0% |
| !!! | CATATCATATTACTGTTTTA+CGG | + | chr4.3:54198311-54198330 | MS.gene45343:intron | 20.0% |
| !!! | CTAAATATATGTCATTTTTG+GGG | - | chr4.3:54199179-54199198 | None:intergenic | 20.0% |
| !!! | TTAGTAATAGTAAGTTTTTC+AGG | + | chr4.3:54199205-54199224 | MS.gene45343:intron | 20.0% |
| !!! | TTTTATAATCAACCATAAGT+TGG | - | chr4.3:54199007-54199026 | None:intergenic | 20.0% |
| ! | AAAAGACCAAATTTATGGAT+TGG | - | chr4.3:54198122-54198141 | None:intergenic | 25.0% |
| ! | AATTAAGTGGAATGAATATG+AGG | - | chr4.3:54196242-54196261 | None:intergenic | 25.0% |
| ! | ACTTGAACATTGATATATAC+GGG | + | chr4.3:54196503-54196522 | MS.gene45343:intron | 25.0% |
| ! | AGCAGTTATTTATCATAGTT+CGG | - | chr4.3:54198408-54198427 | None:intergenic | 25.0% |
| ! | ATAAAATACTAACACACACA+CGG | - | chr4.3:54195747-54195766 | None:intergenic | 25.0% |
| ! | ATACAGTTTATGTTCCATAT+TGG | + | chr4.3:54198528-54198547 | MS.gene45343:intron | 25.0% |
| ! | CTGAAAATGAGTTTATAAGT+GGG | - | chr4.3:54198033-54198052 | None:intergenic | 25.0% |
| ! | GAAATGGAAGAATAATATCT+GGG | + | chr4.3:54197286-54197305 | MS.gene45343:CDS | 25.0% |
| ! | GGTTATAATTAATGGTGATA+AGG | + | chr4.3:54197307-54197326 | MS.gene45343:CDS | 25.0% |
| ! | GTATAAGTATTTATGCATGT+CGG | - | chr4.3:54195648-54195667 | None:intergenic | 25.0% |
| ! | GTGAAAATGAGTTTATAAGT+GGG | - | chr4.3:54197824-54197843 | None:intergenic | 25.0% |
| ! | TAATAAACTAACACACATAG+TGG | - | chr4.3:54196484-54196503 | None:intergenic | 25.0% |
| ! | TAGTATAAGTGCAATTATGT+AGG | - | chr4.3:54199083-54199102 | None:intergenic | 25.0% |
| ! | TATAATCTTTGAATTTGGGT+TGG | + | chr4.3:54197973-54197992 | MS.gene45343:intron | 25.0% |
| ! | TCATTCATATATCCAATGAT+AGG | + | chr4.3:54197039-54197058 | MS.gene45343:intron | 25.0% |
| ! | TCTGAAAATGAGTTTATAAG+TGG | - | chr4.3:54198034-54198053 | None:intergenic | 25.0% |
| ! | TGAAAATGAGTTTATAAGTG+GGG | - | chr4.3:54197823-54197842 | None:intergenic | 25.0% |
| ! | TGAGAATTTGTGATTTAAAC+TGG | + | chr4.3:54196581-54196600 | MS.gene45343:intron | 25.0% |
| ! | TTCTTAAAGTTACTAAGTCT+TGG | + | chr4.3:54198500-54198519 | MS.gene45343:intron | 25.0% |
| !! | AATATTGTGTTTTCATCCAA+CGG | - | chr4.3:54198782-54198801 | None:intergenic | 25.0% |
| !! | ATAATCTTTGAATTTGGGTT+GGG | + | chr4.3:54197974-54197993 | MS.gene45343:intron | 25.0% |
| !! | ATGTATGTTCTTTTCTTTGA+TGG | + | chr4.3:54196164-54196183 | MS.gene45343:intron | 25.0% |
| !! | TGTGTGTGTTAGTATTTTAT+AGG | + | chr4.3:54195747-54195766 | MS.gene45343:intron | 25.0% |
| !!! | CATTTTTGGGGTAATAATTA+AGG | - | chr4.3:54199167-54199186 | None:intergenic | 25.0% |
| !!! | GAAATATCAAATGATAATGG+TGG | - | chr4.3:54198813-54198832 | None:intergenic | 25.0% |
| !!! | TACATTTTTTTTACCTGAGT+CGG | + | chr4.3:54195710-54195729 | MS.gene45343:intron | 25.0% |
| !!! | TTATAGGTTGATAGTGTATA+TGG | + | chr4.3:54195763-54195782 | MS.gene45343:intron | 25.0% |
| AAAACTATCTTGTAAGGTGA+GGG | + | chr4.3:54198001-54198020 | MS.gene45343:intron | 30.0% | |
| AAAATGAGTTTATAAGTGGG+AGG | - | chr4.3:54197821-54197840 | None:intergenic | 30.0% | |
| AAAATGTTCTTGAGCAAGAT+TGG | - | chr4.3:54198606-54198625 | None:intergenic | 30.0% | |
| AAACATGACATTACGACATA+TGG | - | chr4.3:54196413-54196432 | None:intergenic | 30.0% | |
| AACATAATGTAACCGTAGTA+AGG | + | chr4.3:54196041-54196060 | MS.gene45343:intron | 30.0% | |
| AAGTACATAAAGATGCTCTT+TGG | - | chr4.3:54197719-54197738 | None:intergenic | 30.0% | |
| ACTTATAAAGCTCCTATCAT+TGG | - | chr4.3:54197054-54197073 | None:intergenic | 30.0% | |
| AGTAGTTGAACAGACAATAA+AGG | - | chr4.3:54198972-54198991 | None:intergenic | 30.0% | |
| ATGAAAGTGAAACTAACAAG+TGG | - | chr4.3:54196961-54196980 | None:intergenic | 30.0% | |
| ATTAGGTAAATCCATTCAAG+TGG | - | chr4.3:54198682-54198701 | None:intergenic | 30.0% | |
| CATAGTGACTGAAAATTAAG+TGG | - | chr4.3:54196255-54196274 | None:intergenic | 30.0% | |
| CGTGAAAATGAGTTTATAAG+TGG | - | chr4.3:54197825-54197844 | None:intergenic | 30.0% | |
| CTATATCTTTAGATCCTACA+CGG | - | chr4.3:54198160-54198179 | None:intergenic | 30.0% | |
| CTGGTTAAACTATTCCAATA+TGG | - | chr4.3:54198545-54198564 | None:intergenic | 30.0% | |
| GAATAAACGTACTTCTCATA+TGG | - | chr4.3:54197551-54197570 | None:intergenic | 30.0% | |
| GGAAATGGAAGAATAATATC+TGG | + | chr4.3:54197285-54197304 | MS.gene45343:CDS | 30.0% | |
| GTAATGTCATGTTTATATGG+CGG | + | chr4.3:54196419-54196438 | MS.gene45343:intron | 30.0% | |
| GTCGTAATGTCATGTTTATA+TGG | + | chr4.3:54196416-54196435 | MS.gene45343:intron | 30.0% | |
| GTTAAGCCAATCCATAAATT+TGG | + | chr4.3:54198113-54198132 | MS.gene45343:intron | 30.0% | |
| TGACTAATTATTGAATGTGG+TGG | + | chr4.3:54196917-54196936 | MS.gene45343:intron | 30.0% | |
| TGGATTTACCTAATATCCTT+TGG | + | chr4.3:54198688-54198707 | MS.gene45343:intron | 30.0% | |
| TTAACAATGGAAATAGTGCA+CGG | + | chr4.3:54198079-54198098 | MS.gene45343:intron | 30.0% | |
| ! | AAATCCATTCAAGTGGTTTT+AGG | - | chr4.3:54198675-54198694 | None:intergenic | 30.0% |
| ! | GAACATACATAACTTGTACT+AGG | - | chr4.3:54196154-54196173 | None:intergenic | 30.0% |
| ! | TGACTTTGAAGAAATATCCT+AGG | - | chr4.3:54196068-54196087 | None:intergenic | 30.0% |
| ! | TGGATTAGAGTTATCAATGA+TGG | - | chr4.3:54196464-54196483 | None:intergenic | 30.0% |
| ! | TTAAATTATGAAGGTATGGC+AGG | - | chr4.3:54196735-54196754 | None:intergenic | 30.0% |
| ! | TTGAGTTTTTCTTTTCACCA+TGG | - | chr4.3:54197114-54197133 | None:intergenic | 30.0% |
| !! | ATTTATGGATTGGCTTAACT+TGG | - | chr4.3:54198112-54198131 | None:intergenic | 30.0% |
| !! | CTTAAGTTCTAGAAATAAGC+TGG | - | chr4.3:54198759-54198778 | None:intergenic | 30.0% |
| !! | TAACTGTTCTGCTTTTACAT+TGG | + | chr4.3:54198840-54198859 | MS.gene45343:intron | 30.0% |
| !! | TTGAATGTGGTGGATAATTT+AGG | + | chr4.3:54196927-54196946 | MS.gene45343:intron | 30.0% |
| AAATTCTCATTTGTCAGCAG+AGG | - | chr4.3:54196570-54196589 | None:intergenic | 35.0% | |
| AACAAAGTTCATTCGAAGCA+CGG | - | chr4.3:54197692-54197711 | None:intergenic | 35.0% | |
| AATATCCTAGGACCTTACTA+CGG | - | chr4.3:54196056-54196075 | None:intergenic | 35.0% | |
| AATATGTTGAAGTCACGTGT+GGG | + | chr4.3:54195416-54195435 | MS.gene45343:CDS | 35.0% | |
| AATGAGTTTATAAGTGGGGA+AGG | - | chr4.3:54197819-54197838 | None:intergenic | 35.0% | |
| AATGGTGATAAGGTTCCATT+GGG | + | chr4.3:54197317-54197336 | MS.gene45343:CDS | 35.0% | |
| ACAGTATCTGTTGATGCAAA+AGG | + | chr4.3:54196537-54196556 | MS.gene45343:intron | 35.0% | |
| ACGACATATGGCAGAAAAAT+TGG | - | chr4.3:54196401-54196420 | None:intergenic | 35.0% | |
| ATTATTTGTGAATGCACTCC+TGG | + | chr4.3:54195505-54195524 | MS.gene45343:intron | 35.0% | |
| ATTTGTCTCAATGAACTCCT+TGG | + | chr4.3:54195856-54195875 | MS.gene45343:intron | 35.0% | |
| CAAAACTATCTTGTAAGGTG+AGG | + | chr4.3:54198000-54198019 | MS.gene45343:intron | 35.0% | |
| CAATGTGAGACTCTTAACAA+TGG | + | chr4.3:54198066-54198085 | MS.gene45343:intron | 35.0% | |
| CATTGTTAAGAGTCTCACAT+TGG | - | chr4.3:54198068-54198087 | None:intergenic | 35.0% | |
| CTATCCTAAAACCACTTGAA+TGG | + | chr4.3:54198668-54198687 | MS.gene45343:intron | 35.0% | |
| CTCTGCAAATTAGTAAGGAT+TGG | - | chr4.3:54198186-54198205 | None:intergenic | 35.0% | |
| CTTCAAGTCCAAAGGATATT+AGG | - | chr4.3:54198699-54198718 | None:intergenic | 35.0% | |
| GATATATGCTTCAAGTCCAA+AGG | - | chr4.3:54198707-54198726 | None:intergenic | 35.0% | |
| GCAATTATGTAGGTTATGTC+AGG | - | chr4.3:54199073-54199092 | None:intergenic | 35.0% | |
| GCGATTATGTATCATTGATG+TGG | + | chr4.3:54198338-54198357 | MS.gene45343:intron | 35.0% | |
| GCTCAAATACTACAATCAAG+TGG | + | chr4.3:54197352-54197371 | MS.gene45343:CDS | 35.0% | |
| GGAAGATATCTAATTCCTTG+AGG | - | chr4.3:54199052-54199071 | None:intergenic | 35.0% | |
| GGACGATATAATAGATGTTG+CGG | - | chr4.3:54196380-54196399 | None:intergenic | 35.0% | |
| GGGAAGAGATCATATGATTA+AGG | + | chr4.3:54196774-54196793 | MS.gene45343:intron | 35.0% | |
| GGTTCCAAAACTATCTTGTA+AGG | + | chr4.3:54197995-54198014 | MS.gene45343:intron | 35.0% | |
| GTCTCACATTGGATAATGTA+TGG | - | chr4.3:54198057-54198076 | None:intergenic | 35.0% | |
| TAATGGTGATAAGGTTCCAT+TGG | + | chr4.3:54197316-54197335 | MS.gene45343:CDS | 35.0% | |
| TCATTAGCATGATCAGAAAG+AGG | - | chr4.3:54195888-54195907 | None:intergenic | 35.0% | |
| TGATATATACGGGTAGAACT+TGG | + | chr4.3:54196513-54196532 | MS.gene45343:intron | 35.0% | |
| TGTCTGTTCAACTACTGAAT+GGG | + | chr4.3:54198976-54198995 | MS.gene45343:intron | 35.0% | |
| TTAGAGTTATCAATGATGGC+TGG | - | chr4.3:54196460-54196479 | None:intergenic | 35.0% | |
| TTCTCTGTGTGTACTTTGTT+AGG | + | chr4.3:54198639-54198658 | MS.gene45343:intron | 35.0% | |
| TTGTCTGTTCAACTACTGAA+TGG | + | chr4.3:54198975-54198994 | MS.gene45343:intron | 35.0% | |
| TTTAAACTGGCAGTGTACTT+TGG | + | chr4.3:54196594-54196613 | MS.gene45343:intron | 35.0% | |
| ! | AACGAGAGTACAATATGGAA+TGG | - | chr4.3:54198729-54198748 | None:intergenic | 35.0% |
| ! | AGACTTAGGGTTTTTCTTAG+TGG | + | chr4.3:54195472-54195491 | MS.gene45343:intron | 35.0% |
| ! | ATTTCGTCTGAGATCTAAAG+AGG | + | chr4.3:54197469-54197488 | MS.gene45343:CDS | 35.0% |
| ! | CATATTACTGTTTTACGGCT+GGG | + | chr4.3:54198316-54198335 | MS.gene45343:intron | 35.0% |
| ! | CTCACCTTACAAGATAGTTT+TGG | - | chr4.3:54198002-54198021 | None:intergenic | 35.0% |
| ! | TAGGCATATCCATGATTTGT+TGG | - | chr4.3:54197943-54197962 | None:intergenic | 35.0% |
| ! | TCATATTACTGTTTTACGGC+TGG | + | chr4.3:54198315-54198334 | MS.gene45343:intron | 35.0% |
| ! | TCATTGATGTGGTCTCTTTT+CGG | + | chr4.3:54198349-54198368 | MS.gene45343:intron | 35.0% |
| ! | TGAGAAACGAGAGTACAATA+TGG | - | chr4.3:54198734-54198753 | None:intergenic | 35.0% |
| ! | TTTTCATTTTCACACCGTGT+AGG | + | chr4.3:54198143-54198162 | MS.gene45343:intron | 35.0% |
| !! | AATTTTGTTTGCCACATTGC+AGG | + | chr4.3:54196618-54196637 | MS.gene45343:CDS | 35.0% |
| !! | AGGCATATCCATGATTTGTT+GGG | - | chr4.3:54197942-54197961 | None:intergenic | 35.0% |
| !! | ATTTCTAGAACTTAAGCCGT+TGG | + | chr4.3:54198763-54198782 | MS.gene45343:intron | 35.0% |
| !! | GGTTGATAGTGTATATGGTT+TGG | + | chr4.3:54195768-54195787 | MS.gene45343:intron | 35.0% |
| !! | GGTTTGACTTTGATGAGTTT+TGG | + | chr4.3:54195795-54195814 | MS.gene45343:intron | 35.0% |
| !! | TAGTGTATATGGTTTGGTGA+AGG | + | chr4.3:54195774-54195793 | MS.gene45343:intron | 35.0% |
| !!! | TCAAGTGGTTTTAGGATAGT+TGG | - | chr4.3:54198667-54198686 | None:intergenic | 35.0% |
| AAATGATTTCTTGCTCCCTC+TGG | + | chr4.3:54196853-54196872 | MS.gene45343:intron | 40.0% | |
| AATGATTTCTTGCTCCCTCT+GGG | + | chr4.3:54196854-54196873 | MS.gene45343:intron | 40.0% | |
| AATTTGGGCACATTTCCTCA+AGG | + | chr4.3:54199034-54199053 | MS.gene45343:intron | 40.0% | |
| ACACACAGAGAATCACTAGA+GGG | - | chr4.3:54198631-54198650 | None:intergenic | 40.0% | |
| ATCTGTTGATGCAAAAGGAC+CGG | + | chr4.3:54196542-54196561 | MS.gene45343:intron | 40.0% | |
| ATGAAAGTGATGAGAGAGAG+AGG | - | chr4.3:54195556-54195575 | None:intergenic | 40.0% | |
| ATGCTGTGTCAGATGCAAAT+TGG | + | chr4.3:54197510-54197529 | MS.gene45343:CDS | 40.0% | |
| CAGCACTCTGCAAATTAGTA+AGG | - | chr4.3:54198191-54198210 | None:intergenic | 40.0% | |
| CCATACAAAACCAGCTTGTA+AGG | + | chr4.3:54197784-54197803 | MS.gene45343:intron | 40.0% | |
| CCATGGATACATAAAGCACA+TGG | - | chr4.3:54197097-54197116 | None:intergenic | 40.0% | |
| CCATGTGCTTTATGTATCCA+TGG | + | chr4.3:54197094-54197113 | MS.gene45343:intron | 40.0% | |
| GAATATGTTGAAGTCACGTG+TGG | + | chr4.3:54195415-54195434 | MS.gene45343:CDS | 40.0% | |
| GGCAGTTGCAATCTGAAAAA+CGG | - | chr4.3:54199344-54199363 | None:intergenic | 40.0% | |
| GGGTGTACTAGTCATAGATA+TGG | + | chr4.3:54195436-54195455 | MS.gene45343:CDS | 40.0% | |
| GTCTCACATTGGATGAGATA+TGG | - | chr4.3:54197848-54197867 | None:intergenic | 40.0% | |
| GTGTGTTAAGAGTCTCACAT+TGG | - | chr4.3:54197859-54197878 | None:intergenic | 40.0% | |
| TACACACAGAGAATCACTAG+AGG | - | chr4.3:54198632-54198651 | None:intergenic | 40.0% | |
| TCAGAAAGAGGATCAAACCA+AGG | - | chr4.3:54195876-54195895 | None:intergenic | 40.0% | |
| TGGAATAGTTTAACCAGACC+TGG | + | chr4.3:54198548-54198567 | MS.gene45343:intron | 40.0% | |
| TGGTAAAGTCAGTACAAGTC+TGG | - | chr4.3:54199365-54199384 | None:intergenic | 40.0% | |
| TGTTCAACTACTGAATGGGA+AGG | + | chr4.3:54198980-54198999 | MS.gene45343:intron | 40.0% | |
| ! | ATGAGTTTGTTCGCTGTACT+AGG | + | chr4.3:54197429-54197448 | MS.gene45343:CDS | 40.0% |
| ! | CATAGATATGGTGATGCTGT+TGG | + | chr4.3:54195448-54195467 | MS.gene45343:CDS | 40.0% |
| ! | TGATGCTGTTGGTAGACTTA+GGG | + | chr4.3:54195459-54195478 | MS.gene45343:intron | 40.0% |
| ! | TGTGATGATGAAGAAGAACG+AGG | + | chr4.3:54199234-54199253 | MS.gene45343:CDS | 40.0% |
| !! | GAATTTTGACAACACTGCAG+TGG | - | chr4.3:54196313-54196332 | None:intergenic | 40.0% |
| !!! | CCTTACAAGCTGGTTTTGTA+TGG | - | chr4.3:54197787-54197806 | None:intergenic | 40.0% |
| !!! | CTGGTTTTGTATGGTGAGTT+AGG | - | chr4.3:54197778-54197797 | None:intergenic | 40.0% |
| ACAACACTGCAGTGGATACA+TGG | - | chr4.3:54196305-54196324 | None:intergenic | 45.0% | |
| ACACAGCATCATGGTGAATG+CGG | - | chr4.3:54197499-54197518 | None:intergenic | 45.0% | |
| CAAACCCAGAATTCAGTACC+AGG | - | chr4.3:54198569-54198588 | None:intergenic | 45.0% | |
| CGAAGAGTTTACAGAGGATG+CGG | + | chr4.3:54199261-54199280 | MS.gene45343:CDS | 45.0% | |
| GAAGAGAGACAGCAAGGAAA+TGG | + | chr4.3:54197270-54197289 | MS.gene45343:CDS | 45.0% | |
| GAATGGGAAGGACCAACTTA+TGG | + | chr4.3:54198992-54199011 | MS.gene45343:intron | 45.0% | |
| GAGTGTTTCTCAAATGCAGC+AGG | - | chr4.3:54197248-54197267 | None:intergenic | 45.0% | |
| GCTGCATTTGAGAAACACTC+TGG | + | chr4.3:54197248-54197267 | MS.gene45343:CDS | 45.0% | |
| GGAAGTCGAAGAGTTTACAG+AGG | + | chr4.3:54199255-54199274 | MS.gene45343:CDS | 45.0% | |
| GTGTTGTCAAAATTCCGCCA+TGG | + | chr4.3:54196318-54196337 | MS.gene45343:intron | 45.0% | |
| TACAGCGAACAAACTCATCG+CGG | - | chr4.3:54197427-54197446 | None:intergenic | 45.0% | |
| TGCACTTCTTGTGTGTGCTT+CGG | + | chr4.3:54199306-54199325 | MS.gene45343:CDS | 45.0% | |
| TGTAACCGTAGTAAGGTCCT+AGG | + | chr4.3:54196048-54196067 | MS.gene45343:intron | 45.0% | |
| TTGCATCTGACACAGCATCA+TGG | - | chr4.3:54197508-54197527 | None:intergenic | 45.0% | |
| TTGTTTGCCACATTGCAGGA+TGG | + | chr4.3:54196622-54196641 | MS.gene45343:CDS | 45.0% | |
| ! | AGCAGCACTGTTTTACCCAA+TGG | - | chr4.3:54197335-54197354 | None:intergenic | 45.0% |
| ! | CAGACCTGGTACTGAATTCT+GGG | + | chr4.3:54198562-54198581 | MS.gene45343:intron | 45.0% |
| ! | GTGATGCTGTTGGTAGACTT+AGG | + | chr4.3:54195458-54195477 | MS.gene45343:intron | 45.0% |
| ! | TCATTTGTCAGCAGAGGTAC+CGG | - | chr4.3:54196564-54196583 | None:intergenic | 45.0% |
| !! | AACCTTTGCACGTTGGTGAT+CGG | - | chr4.3:54199287-54199306 | None:intergenic | 45.0% |
| !! | ACGCTCTAGATGTCTGGTTT+TGG | - | chr4.3:54197893-54197912 | None:intergenic | 45.0% |
| !!! | CGCTCTAGATGTCTGGTTTT+GGG | - | chr4.3:54197892-54197911 | None:intergenic | 45.0% |
| !!! | TATGGCGGATTTTTGACCTG+TGG | + | chr4.3:54196434-54196453 | MS.gene45343:intron | 45.0% |
| !! | AAGATTATATATTATATTAT+AGG | - | chr4.3:54197962-54197981 | None:intergenic | 5.0% |
| AGAGAGAGAGGAGAGAGAGA+GGG | - | chr4.3:54195544-54195563 | None:intergenic | 50.0% | |
| ATAGATGTTGCGGCCTCTGA+CGG | - | chr4.3:54196370-54196389 | None:intergenic | 50.0% | |
| CAAGTGGCGAAAGCTGCTAA+TGG | + | chr4.3:54197368-54197387 | MS.gene45343:CDS | 50.0% | |
| CCAGAATTCAGTACCAGGTC+TGG | - | chr4.3:54198564-54198583 | None:intergenic | 50.0% | |
| CTCAGAGATCCCAAAATGGC+CGG | + | chr4.3:54197393-54197412 | MS.gene45343:CDS | 50.0% | |
| CTTGACACCATCCTGCAATG+TGG | - | chr4.3:54196632-54196651 | None:intergenic | 50.0% | |
| GAAGTGCAACCTTTGCACGT+TGG | - | chr4.3:54199294-54199313 | None:intergenic | 50.0% | |
| GACTTGGATGGTTTGATCGC+AGG | + | chr4.3:54197913-54197932 | MS.gene45343:intron | 50.0% | |
| GCACTTCTTGTGTGTGCTTC+GGG | + | chr4.3:54199307-54199326 | MS.gene45343:CDS | 50.0% | |
| GCATCACTCACCTTACAAGC+TGG | - | chr4.3:54197797-54197816 | None:intergenic | 50.0% | |
| GGCTCTCAGAGATCCCAAAA+TGG | + | chr4.3:54197389-54197408 | MS.gene45343:CDS | 50.0% | |
| TCAGAGATCCCAAAATGGCC+GGG | + | chr4.3:54197394-54197413 | MS.gene45343:CDS | 50.0% | |
| TGCACTCCTGGTTGTGATGA+AGG | + | chr4.3:54195517-54195536 | MS.gene45343:intron | 50.0% | |
| TTGGATGGTTTGATCGCAGG+TGG | + | chr4.3:54197916-54197935 | MS.gene45343:intron | 50.0% | |
| ! | ACTCTGGAAGAGAGACAGCA+AGG | + | chr4.3:54197264-54197283 | MS.gene45343:CDS | 50.0% |
| ! | CAAGTCACGCTCTAGATGTC+TGG | - | chr4.3:54197899-54197918 | None:intergenic | 50.0% |
| ! | CACATTGCAGGATGGTGTCA+AGG | + | chr4.3:54196630-54196649 | MS.gene45343:CDS | 50.0% |
| ! | CAGACATCTAGAGCGTGACT+TGG | + | chr4.3:54197897-54197916 | MS.gene45343:intron | 50.0% |
| ! | CATCTAGAGCGTGACTTGGA+TGG | + | chr4.3:54197901-54197920 | MS.gene45343:intron | 50.0% |
| ! | CCAGACCTGGTACTGAATTC+TGG | + | chr4.3:54198561-54198580 | MS.gene45343:intron | 50.0% |
| ! | TATCAATGATGGCTGGCCAC+AGG | - | chr4.3:54196453-54196472 | None:intergenic | 50.0% |
| !!! | CACTATGGCGGATTTTGTGC+TGG | + | chr4.3:54196344-54196363 | MS.gene45343:intron | 50.0% |
| !!! | GTCTGGTTTTGGGTGTGAGA+GGG | - | chr4.3:54197882-54197901 | None:intergenic | 50.0% |
| !!! | TCCCTCTGGGAGTGTTTTGA+GGG | + | chr4.3:54196867-54196886 | MS.gene45343:intron | 50.0% |
| !!! | TCTGGTTTTGGGTGTGAGAG+GGG | - | chr4.3:54197881-54197900 | None:intergenic | 50.0% |
| !!! | TGTCTGGTTTTGGGTGTGAG+AGG | - | chr4.3:54197883-54197902 | None:intergenic | 50.0% |
| AATCCGCCATAGTGCTGCCA+TGG | - | chr4.3:54196338-54196357 | None:intergenic | 55.0% | |
| AGATCCCAAAATGGCCGGGT+TGG | + | chr4.3:54197398-54197417 | MS.gene45343:CDS | 55.0% | |
| ATTCCGCCATGGCAGCACTA+TGG | + | chr4.3:54196329-54196348 | MS.gene45343:intron | 55.0% | |
| CCCCTCAAAACACTCCCAGA+GGG | - | chr4.3:54196871-54196890 | None:intergenic | 55.0% | |
| GAGAGAGAGAGGAGAGAGAG+AGG | - | chr4.3:54195545-54195564 | None:intergenic | 55.0% | |
| GAGGGACCTTCATCACAACC+AGG | - | chr4.3:54195526-54195545 | None:intergenic | 55.0% | |
| GCAGGTGGCCCAACAAATCA+TGG | + | chr4.3:54197931-54197950 | MS.gene45343:intron | 55.0% | |
| TCCCCTCAAAACACTCCCAG+AGG | - | chr4.3:54196872-54196891 | None:intergenic | 55.0% | |
| !! | GATTTTGTGCTGGCCGTCAG+AGG | + | chr4.3:54196354-54196373 | MS.gene45343:intron | 55.0% |
| !! | GTGACCAACCCGGCCATTTT+GGG | - | chr4.3:54197405-54197424 | None:intergenic | 55.0% |
| !!! | CCCTCTGGGAGTGTTTTGAG+GGG | + | chr4.3:54196868-54196887 | MS.gene45343:intron | 55.0% |
| !!! | CTCCCTCTGGGAGTGTTTTG+AGG | + | chr4.3:54196866-54196885 | MS.gene45343:intron | 55.0% |
| ACTCATCGCGGTGACCAACC+CGG | - | chr4.3:54197415-54197434 | None:intergenic | 60.0% | |
| GGCCGATCACCAACGTGCAA+AGG | + | chr4.3:54199282-54199301 | MS.gene45343:CDS | 60.0% | |
| ! | GGTGACCAACCCGGCCATTT+TGG | - | chr4.3:54197406-54197425 | None:intergenic | 60.0% |
| !! | GGACACTGACACACCGACTC+AGG | - | chr4.3:54195726-54195745 | None:intergenic | 60.0% |
| CCGCCATAGTGCTGCCATGG+CGG | - | chr4.3:54196335-54196354 | None:intergenic | 65.0% | |
| CCGCCATGGCAGCACTATGG+CGG | + | chr4.3:54196332-54196351 | MS.gene45343:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 54195391 | 54199401 | 54195391 | ID=MS.gene45343 |
| chr4.3 | mRNA | 54195391 | 54199401 | 54195391 | ID=MS.gene45343.t1;Parent=MS.gene45343 |
| chr4.3 | exon | 54195391 | 54195469 | 54195391 | ID=MS.gene45343.t1.exon1;Parent=MS.gene45343.t1 |
| chr4.3 | CDS | 54195391 | 54195469 | 54195391 | ID=cds.MS.gene45343.t1;Parent=MS.gene45343.t1 |
| chr4.3 | exon | 54196607 | 54196672 | 54196607 | ID=MS.gene45343.t1.exon2;Parent=MS.gene45343.t1 |
| chr4.3 | CDS | 54196607 | 54196672 | 54196607 | ID=cds.MS.gene45343.t1;Parent=MS.gene45343.t1 |
| chr4.3 | exon | 54197234 | 54197558 | 54197234 | ID=MS.gene45343.t1.exon3;Parent=MS.gene45343.t1 |
| chr4.3 | CDS | 54197234 | 54197558 | 54197234 | ID=cds.MS.gene45343.t1;Parent=MS.gene45343.t1 |
| chr4.3 | exon | 54199215 | 54199401 | 54199215 | ID=MS.gene45343.t1.exon4;Parent=MS.gene45343.t1 |
| chr4.3 | CDS | 54199215 | 54199401 | 54199215 | ID=cds.MS.gene45343.t1;Parent=MS.gene45343.t1 |
| Gene Sequence |
| Protein sequence |
