Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45346.t1 | KEH29621.1 | 68.6 | 70 | 22 | 0 | 109 | 178 | 113 | 182 | 1.00E-12 | 83.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45346.t1 | O22533 | 66.7 | 42 | 13 | 1 | 30 | 71 | 78 | 118 | 5.6e-07 | 55.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45346.t1 | A0A072UJK9 | 68.6 | 70 | 22 | 0 | 109 | 178 | 113 | 182 | 7.5e-13 | 83.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene45346.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45346.t1 | MTR_4g046100 | 85.714 | 70 | 10 | 0 | 109 | 178 | 113 | 182 | 1.18e-32 | 117 |
| MS.gene45346.t1 | MTR_8g045340 | 48.936 | 94 | 43 | 3 | 74 | 165 | 239 | 329 | 9.04e-16 | 74.3 |
| MS.gene45346.t1 | MTR_1g106730 | 61.111 | 54 | 8 | 1 | 11 | 64 | 65 | 105 | 1.43e-13 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 43 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAAGTGCCAAATGATAAT+AGG | 0.276687 | 4.3:+54417124 | None:intergenic |
| GATCATTTGGCACTTGAAAA+TGG | 0.288965 | 4.3:-54417161 | MS.gene45346:CDS |
| GTCTGCATCCTATTATCATT+TGG | 0.387158 | 4.3:-54417132 | MS.gene45346:CDS |
| ATTGGTATTGGCCATCTCAT+TGG | 0.389731 | 4.3:+54417184 | None:intergenic |
| ATCTCATTGGAACCATTTGC+AGG | 0.395575 | 4.3:+54417197 | None:intergenic |
| TTCAAGTGCCAAATGATCAT+TGG | 0.398093 | 4.3:+54417166 | None:intergenic |
| GGCCAATACCAATGATCATT+TGG | 0.407299 | 4.3:-54417174 | MS.gene45346:CDS |
| TGATGAAGATTTACGGTGGC+TGG | 0.425019 | 4.3:+54418886 | None:intergenic |
| CCACCAAGTGCTTGATAAGA+TGG | 0.454419 | 4.3:+54418917 | None:intergenic |
| GTGAAGATGATGATTCGATT+TGG | 0.467194 | 4.3:+54419017 | None:intergenic |
| TGCCAAATGATCATTGGTAT+TGG | 0.477380 | 4.3:+54417172 | None:intergenic |
| TTGCGTTAATGCATTGGTAC+GGG | 0.483144 | 4.3:+54417082 | None:intergenic |
| CATGTGTCCCCTACGGTTAG+TGG | 0.483322 | 4.3:-54417245 | MS.gene45346:CDS |
| TTTGCGTTAATGCATTGGTA+CGG | 0.484633 | 4.3:+54417081 | None:intergenic |
| CACTTGTGGTTCAACTTCAC+TGG | 0.486792 | 4.3:+54418962 | None:intergenic |
| CCATCTTATCAAGCACTTGG+TGG | 0.494016 | 4.3:-54418917 | MS.gene45346:CDS |
| TTTGCAAGATGTGTGTCAAC+TGG | 0.501548 | 4.3:+54417221 | None:intergenic |
| GTCTGCTCAGGTGCCGCAGA+TGG | 0.504006 | 4.3:+54417275 | None:intergenic |
| TGTCGCAAACACTGCACTTG+TGG | 0.505114 | 4.3:+54418948 | None:intergenic |
| TGGTTCAACTTCACTGGTGA+TGG | 0.505953 | 4.3:+54418968 | None:intergenic |
| CATCTTGCAAATCCTGCAAA+TGG | 0.531278 | 4.3:-54417209 | MS.gene45346:CDS |
| ACATGATGTTCAGTCTGCTC+AGG | 0.537680 | 4.3:+54417263 | None:intergenic |
| TGTGGTTTGCGTTAATGCAT+TGG | 0.538245 | 4.3:+54417076 | None:intergenic |
| GCAAACCACATGGTTAGAAT+CGG | 0.539371 | 4.3:-54417063 | MS.gene45346:CDS |
| TTTCCATCTTATCAAGCACT+TGG | 0.542353 | 4.3:-54418920 | MS.gene45346:CDS |
| ATTACACAATCCCCTCCTCA+TGG | 0.549361 | 4.3:+54416997 | None:intergenic |
| TGCAAATGGTTCCAATGAGA+TGG | 0.558859 | 4.3:-54417195 | MS.gene45346:CDS |
| GAAACTCTCCTCCATGAGGA+GGG | 0.569668 | 4.3:-54417008 | MS.gene45346:CDS |
| CGAAACTCTCCTCCATGAGG+AGG | 0.585716 | 4.3:-54417009 | MS.gene45346:CDS |
| GGTGTCGTAATTTCAGATGT+TGG | 0.588545 | 4.3:+54417296 | None:intergenic |
| CAACTGGACCACTAACCGTA+GGG | 0.592519 | 4.3:+54417237 | None:intergenic |
| GGTGATGGCGGCAACTGCAA+CGG | 0.596265 | 4.3:+54418983 | None:intergenic |
| AAACTCTCCTCCATGAGGAG+GGG | 0.607869 | 4.3:-54417007 | MS.gene45346:CDS |
| ATTGGTACGGGCAATCTCAT+CGG | 0.611220 | 4.3:+54417094 | None:intergenic |
| TGAACATCATGTGTCCCCTA+CGG | 0.622362 | 4.3:-54417252 | MS.gene45346:CDS |
| TCAACTGGACCACTAACCGT+AGG | 0.625130 | 4.3:+54417236 | None:intergenic |
| TTCAACTTCACTGGTGATGG+CGG | 0.633241 | 4.3:+54418971 | None:intergenic |
| TGAAATTACGACACCATCTG+CGG | 0.633569 | 4.3:-54417288 | MS.gene45346:CDS |
| ATGCATTAACGCAAACCACA+TGG | 0.638515 | 4.3:-54417073 | MS.gene45346:CDS |
| CAGAACCGATTCTAACCATG+TGG | 0.651961 | 4.3:+54417058 | None:intergenic |
| AATCGAAACTCTCCTCCATG+AGG | 0.675009 | 4.3:-54417012 | MS.gene45346:CDS |
| AACTGGACCACTAACCGTAG+GGG | 0.695471 | 4.3:+54417238 | None:intergenic |
| ACACAATCCCCTCCTCATGG+AGG | 0.723061 | 4.3:+54417000 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACAAATATATGATAGAATTT+TGG | + | chr4.3:54417862-54417881 | None:intergenic | 15.0% |
| !! | AAAGTCGATATGATAAAATT+TGG | + | chr4.3:54417681-54417700 | None:intergenic | 20.0% |
| !! | AAGTCGATATGATAAAATTT+GGG | + | chr4.3:54417680-54417699 | None:intergenic | 20.0% |
| !! | ATAAAAACTAATGTTGCAAA+TGG | + | chr4.3:54417991-54418010 | None:intergenic | 20.0% |
| !! | TAGAAATTTCGTATAATTGA+GGG | - | chr4.3:54417579-54417598 | MS.gene45346:intron | 20.0% |
| !! | TTAGAAATTTCGTATAATTG+AGG | - | chr4.3:54417578-54417597 | MS.gene45346:intron | 20.0% |
| ! | AGTATCTGACAATGAAATTT+AGG | - | chr4.3:54418060-54418079 | MS.gene45346:intron | 25.0% |
| ! | TAAGCGTATAAAATATGCAA+CGG | - | chr4.3:54417893-54417912 | MS.gene45346:intron | 25.0% |
| !! | AAAGTACTTATTAAAGTCCT+TGG | + | chr4.3:54418269-54418288 | None:intergenic | 25.0% |
| !!! | AGAGATGTTGATTTTTTCAT+TGG | + | chr4.3:54417020-54417039 | None:intergenic | 25.0% |
| AAATTCAGGGACTAATTTGA+TGG | - | chr4.3:54417623-54417642 | MS.gene45346:intron | 30.0% | |
| AAGCGTATAAAATATGCAAC+GGG | - | chr4.3:54417894-54417913 | MS.gene45346:intron | 30.0% | |
| ATTTATAAAATCCACGACCA+AGG | + | chr4.3:54418156-54418175 | None:intergenic | 30.0% | |
| CTATCTAACCAATATTCTTG+TGG | + | chr4.3:54418337-54418356 | None:intergenic | 30.0% | |
| TAGACTTACCACAAGAATAT+TGG | - | chr4.3:54418326-54418345 | MS.gene45346:intron | 30.0% | |
| TCGAAACATTGGAAAACAAA+GGG | - | chr4.3:54418112-54418131 | MS.gene45346:intron | 30.0% | |
| TGATCTCATAAAATAGACGA+CGG | + | chr4.3:54418471-54418490 | None:intergenic | 30.0% | |
| TGGGACTAATTTGATTGATT+TGG | + | chr4.3:54417429-54417448 | None:intergenic | 30.0% | |
| TTGGTTAGATAGAACCTTAA+TGG | - | chr4.3:54418345-54418364 | MS.gene45346:intron | 30.0% | |
| TTTATAAAATCCACGACCAA+GGG | + | chr4.3:54418155-54418174 | None:intergenic | 30.0% | |
| ! | TCGTCTATTTTATGAGATCA+TGG | - | chr4.3:54418471-54418490 | MS.gene45346:intron | 30.0% |
| ! | TTGAAGTGCCAAATGATAAT+AGG | + | chr4.3:54418947-54418966 | None:intergenic | 30.0% |
| !! | GAGAATGGAGAAATTTTTAG+CGG | - | chr4.3:54417275-54417294 | MS.gene45346:CDS | 30.0% |
| !!! | AGAATGGAGAAATTTTTAGC+GGG | - | chr4.3:54417276-54417295 | MS.gene45346:CDS | 30.0% |
| !!! | CTCTTTAGCTTTTGAACAAT+CGG | - | chr4.3:54418738-54418757 | MS.gene45346:intron | 30.0% |
| AAGGAGGAATATGTAATGCA+GGG | - | chr4.3:54417348-54417367 | MS.gene45346:intron | 35.0% | |
| AATGGGGACTGTTAATCTTA+AGG | - | chr4.3:54418216-54418235 | MS.gene45346:intron | 35.0% | |
| AGAAGCCGCAAAAACAAATA+TGG | - | chr4.3:54418683-54418702 | MS.gene45346:intron | 35.0% | |
| ATCGACGTTTGACAAATTCA+GGG | - | chr4.3:54417550-54417569 | MS.gene45346:intron | 35.0% | |
| CGATTGTTCAAAAGCTAAAG+AGG | + | chr4.3:54418740-54418759 | None:intergenic | 35.0% | |
| GATCATTTGGCACTTGAAAA+TGG | - | chr4.3:54418907-54418926 | MS.gene45346:CDS | 35.0% | |
| GGTAATGAAGAGGAAAATGT+TGG | + | chr4.3:54417214-54417233 | None:intergenic | 35.0% | |
| GTATAATTGAGGGACTAAGT+TGG | - | chr4.3:54417589-54417608 | MS.gene45346:intron | 35.0% | |
| GTCGAAACATTGGAAAACAA+AGG | - | chr4.3:54418111-54418130 | MS.gene45346:intron | 35.0% | |
| GTCTGCATCCTATTATCATT+TGG | - | chr4.3:54418936-54418955 | MS.gene45346:CDS | 35.0% | |
| GTGAAGATGATGATTCGATT+TGG | + | chr4.3:54417054-54417073 | None:intergenic | 35.0% | |
| GTGCTTCTGATGAAGATTTA+CGG | + | chr4.3:54417192-54417211 | None:intergenic | 35.0% | |
| TACTGTCTTAGTCGAAACAT+TGG | - | chr4.3:54418101-54418120 | MS.gene45346:intron | 35.0% | |
| TATAAAATATGCAACGGGTG+CGG | - | chr4.3:54417899-54417918 | MS.gene45346:intron | 35.0% | |
| TATTAAAGTCCTTGGACCAA+CGG | + | chr4.3:54418261-54418280 | None:intergenic | 35.0% | |
| TCCAAAATCATCATCATCTC+CGG | + | chr4.3:54417250-54417269 | None:intergenic | 35.0% | |
| TGATCGAATGACCAAGAATT+TGG | + | chr4.3:54418567-54418586 | None:intergenic | 35.0% | |
| TGCCAAATGATCATTGGTAT+TGG | + | chr4.3:54418899-54418918 | None:intergenic | 35.0% | |
| TTAGGACTAGATTGTCTTAG+TGG | - | chr4.3:54418078-54418097 | MS.gene45346:intron | 35.0% | |
| TTATGAGATCATGGTTGAGA+GGG | - | chr4.3:54418480-54418499 | MS.gene45346:intron | 35.0% | |
| TTCAAGTGCCAAATGATCAT+TGG | + | chr4.3:54418905-54418924 | None:intergenic | 35.0% | |
| TTCTGACTGAAATGTGAAGA+AGG | - | chr4.3:54417329-54417348 | MS.gene45346:intron | 35.0% | |
| TTGTCAAACGTCGATCAAAA+AGG | + | chr4.3:54417545-54417564 | None:intergenic | 35.0% | |
| TTTATGAGATCATGGTTGAG+AGG | - | chr4.3:54418479-54418498 | MS.gene45346:intron | 35.0% | |
| TTTCCATCTTATCAAGCACT+TGG | - | chr4.3:54417148-54417167 | MS.gene45346:CDS | 35.0% | |
| ! | TTTGCGTTAATGCATTGGTA+CGG | + | chr4.3:54418990-54419009 | None:intergenic | 35.0% |
| !! | AGATGATGATGATTTTGGAG+GGG | - | chr4.3:54417251-54417270 | MS.gene45346:CDS | 35.0% |
| !! | GAGATGATGATGATTTTGGA+GGG | - | chr4.3:54417250-54417269 | MS.gene45346:CDS | 35.0% |
| !!! | GCCTTCCATATTTGTTTTTG+CGG | + | chr4.3:54418691-54418710 | None:intergenic | 35.0% |
| AGGAGGAATATGTAATGCAG+GGG | - | chr4.3:54417349-54417368 | MS.gene45346:intron | 40.0% | |
| AGGTTCAAGGATGTGTTTGA+TGG | - | chr4.3:54417306-54417325 | MS.gene45346:CDS | 40.0% | |
| ATCTCATTGGAACCATTTGC+AGG | + | chr4.3:54418874-54418893 | None:intergenic | 40.0% | |
| ATGCATTAACGCAAACCACA+TGG | - | chr4.3:54418995-54419014 | MS.gene45346:CDS | 40.0% | |
| ATGGAAATTGCTGCTGCAAT+TGG | - | chr4.3:54418364-54418383 | MS.gene45346:intron | 40.0% | |
| ATGTAATGCAGGGGCAAAAT+GGG | - | chr4.3:54417358-54417377 | MS.gene45346:intron | 40.0% | |
| ATGTGCATTACCCTAGCAAT+GGG | - | chr4.3:54418199-54418218 | MS.gene45346:intron | 40.0% | |
| ATTAAAGTCCTTGGACCAAC+GGG | + | chr4.3:54418260-54418279 | None:intergenic | 40.0% | |
| ATTAACAGTCCCCATTGCTA+GGG | + | chr4.3:54418212-54418231 | None:intergenic | 40.0% | |
| ATTCATACTCCACCTCAACA+GGG | + | chr4.3:54418519-54418538 | None:intergenic | 40.0% | |
| ATTGGAAAACAAAGGGTCCT+TGG | - | chr4.3:54418119-54418138 | MS.gene45346:intron | 40.0% | |
| CAAATTAGTCCCAGAACATG+TGG | - | chr4.3:54417436-54417455 | MS.gene45346:intron | 40.0% | |
| CATCTTGCAAATCCTGCAAA+TGG | - | chr4.3:54418859-54418878 | MS.gene45346:intron | 40.0% | |
| CCAAGGGAAATCAATTTCCA+AGG | + | chr4.3:54418139-54418158 | None:intergenic | 40.0% | |
| CTTCTGATGAAGATTTACGG+TGG | + | chr4.3:54417189-54417208 | None:intergenic | 40.0% | |
| GAAGGAGGAATATGTAATGC+AGG | - | chr4.3:54417347-54417366 | MS.gene45346:intron | 40.0% | |
| GATCGACGTTTGACAAATTC+AGG | - | chr4.3:54417549-54417568 | MS.gene45346:intron | 40.0% | |
| GCAAACCACATGGTTAGAAT+CGG | - | chr4.3:54419005-54419024 | MS.gene45346:CDS | 40.0% | |
| GCCGCAAAAACAAATATGGA+AGG | - | chr4.3:54418687-54418706 | MS.gene45346:intron | 40.0% | |
| GGCCAATACCAATGATCATT+TGG | - | chr4.3:54418894-54418913 | MS.gene45346:intron | 40.0% | |
| GGGACTGTTAATCTTAAGGT+GGG | - | chr4.3:54418220-54418239 | MS.gene45346:intron | 40.0% | |
| TATGTAATGCAGGGGCAAAA+TGG | - | chr4.3:54417357-54417376 | MS.gene45346:intron | 40.0% | |
| TATGTGCATTACCCTAGCAA+TGG | - | chr4.3:54418198-54418217 | MS.gene45346:intron | 40.0% | |
| TCTGGAAAAAGATCCGACTA+AGG | - | chr4.3:54418606-54418625 | MS.gene45346:intron | 40.0% | |
| TGAAATTACGACACCATCTG+CGG | - | chr4.3:54418780-54418799 | MS.gene45346:intron | 40.0% | |
| TGACTGAAATGTGAAGAAGG+AGG | - | chr4.3:54417332-54417351 | MS.gene45346:intron | 40.0% | |
| TGCAAATGGTTCCAATGAGA+TGG | - | chr4.3:54418873-54418892 | MS.gene45346:intron | 40.0% | |
| TGCAGCAGCAATTTCCATTA+AGG | + | chr4.3:54418362-54418381 | None:intergenic | 40.0% | |
| TGGCAATGCGTACAAAATTC+AGG | + | chr4.3:54418547-54418566 | None:intergenic | 40.0% | |
| TGTACGCATTGCCAAATTCT+TGG | - | chr4.3:54418553-54418572 | MS.gene45346:intron | 40.0% | |
| TTTGCAAGATGTGTGTCAAC+TGG | + | chr4.3:54418850-54418869 | None:intergenic | 40.0% | |
| ! | AAATTGATTTCCCTTGGTCG+TGG | - | chr4.3:54418142-54418161 | MS.gene45346:intron | 40.0% |
| ! | CCTTGGAAATTGATTTCCCT+TGG | - | chr4.3:54418136-54418155 | MS.gene45346:intron | 40.0% |
| ! | GGTGTCGTAATTTCAGATGT+TGG | + | chr4.3:54418775-54418794 | None:intergenic | 40.0% |
| ! | TGTGGTTTGCGTTAATGCAT+TGG | + | chr4.3:54418995-54419014 | None:intergenic | 40.0% |
| ! | TTGCGTTAATGCATTGGTAC+GGG | + | chr4.3:54418989-54419008 | None:intergenic | 40.0% |
| ! | TTTTTGCGGCTTCTGTTGAA+TGG | + | chr4.3:54418677-54418696 | None:intergenic | 40.0% |
| !! | ATTGGTATTGGCCATCTCAT+TGG | + | chr4.3:54418887-54418906 | None:intergenic | 40.0% |
| !! | GGAGATGATGATGATTTTGG+AGG | - | chr4.3:54417249-54417268 | MS.gene45346:CDS | 40.0% |
| !! | TTCTGACGTTGGTAATGAAG+AGG | + | chr4.3:54417224-54417243 | None:intergenic | 40.0% |
| !!! | AATTTTTAGCGGGAAGGAGA+AGG | - | chr4.3:54417286-54417305 | MS.gene45346:CDS | 40.0% |
| !!! | TGGAGAAATTTTTAGCGGGA+AGG | - | chr4.3:54417280-54417299 | MS.gene45346:CDS | 40.0% |
| !!! | TTGCGTGCACATTTTTTGCA+GGG | + | chr4.3:54418036-54418055 | None:intergenic | 40.0% |
| AACCTTTGGCTATTACGTGC+GGG | - | chr4.3:54418423-54418442 | MS.gene45346:intron | 45.0% | |
| AAGAAGGAAGCCACATGTTC+TGG | + | chr4.3:54417449-54417468 | None:intergenic | 45.0% | |
| AATCGAAACTCTCCTCCATG+AGG | - | chr4.3:54419056-54419075 | MS.gene45346:CDS | 45.0% | |
| ACAAGACAACACAGCATGCA+GGG | - | chr4.3:54417478-54417497 | MS.gene45346:intron | 45.0% | |
| ACATGATGTTCAGTCTGCTC+AGG | + | chr4.3:54418808-54418827 | None:intergenic | 45.0% | |
| AGAAGGAAGCCACATGTTCT+GGG | + | chr4.3:54417448-54417467 | None:intergenic | 45.0% | |
| ATTACCAACGTCAGAATCGC+CGG | - | chr4.3:54417228-54417247 | MS.gene45346:CDS | 45.0% | |
| ATTCGATCACGAACTGTCGT+TGG | - | chr4.3:54418578-54418597 | MS.gene45346:intron | 45.0% | |
| ATTGGTACGGGCAATCTCAT+CGG | + | chr4.3:54418977-54418996 | None:intergenic | 45.0% | |
| CACTTGTGGTTCAACTTCAC+TGG | + | chr4.3:54417109-54417128 | None:intergenic | 45.0% | |
| CATTCATACTCCACCTCAAC+AGG | + | chr4.3:54418520-54418539 | None:intergenic | 45.0% | |
| CCACCAAGTGCTTGATAAGA+TGG | + | chr4.3:54417154-54417173 | None:intergenic | 45.0% | |
| CCATCTTATCAAGCACTTGG+TGG | - | chr4.3:54417151-54417170 | MS.gene45346:CDS | 45.0% | |
| CTGTTGAGGTGGAGTATGAA+TGG | - | chr4.3:54418518-54418537 | MS.gene45346:intron | 45.0% | |
| GAACCTTTGGCTATTACGTG+CGG | - | chr4.3:54418422-54418441 | MS.gene45346:intron | 45.0% | |
| GATTAACAGTCCCCATTGCT+AGG | + | chr4.3:54418213-54418232 | None:intergenic | 45.0% | |
| GATTTCTCGCAGTCCTTAGT+CGG | + | chr4.3:54418622-54418641 | None:intergenic | 45.0% | |
| GCGACTCATAAACGAACCTT+TGG | - | chr4.3:54418409-54418428 | MS.gene45346:intron | 45.0% | |
| GGGGACTGTTAATCTTAAGG+TGG | - | chr4.3:54418219-54418238 | MS.gene45346:intron | 45.0% | |
| GTCGCGACGTCTATAATAAG+CGG | + | chr4.3:54418394-54418413 | None:intergenic | 45.0% | |
| TACAAGACAACACAGCATGC+AGG | - | chr4.3:54417477-54417496 | MS.gene45346:intron | 45.0% | |
| TCGCGACGTCTATAATAAGC+GGG | + | chr4.3:54418393-54418412 | None:intergenic | 45.0% | |
| TGAACATCATGTGTCCCCTA+CGG | - | chr4.3:54418816-54418835 | MS.gene45346:intron | 45.0% | |
| TGATGAAGATTTACGGTGGC+TGG | + | chr4.3:54417185-54417204 | None:intergenic | 45.0% | |
| TGGTTCAACTTCACTGGTGA+TGG | + | chr4.3:54417103-54417122 | None:intergenic | 45.0% | |
| TGTGCATTACCCTAGCAATG+GGG | - | chr4.3:54418200-54418219 | MS.gene45346:intron | 45.0% | |
| ! | AAGGCACGTGATAACGTTAC+TGG | - | chr4.3:54418706-54418725 | MS.gene45346:intron | 45.0% |
| ! | CAGAACCGATTCTAACCATG+TGG | + | chr4.3:54419013-54419032 | None:intergenic | 45.0% |
| ! | CGTGATAACGTTACTGGCAT+TGG | - | chr4.3:54418712-54418731 | MS.gene45346:intron | 45.0% |
| ! | TAACAGAGCACTTTGACGGA+GGG | - | chr4.3:54417518-54417537 | MS.gene45346:intron | 45.0% |
| ! | TGGCTAACAGAGCACTTTGA+CGG | - | chr4.3:54417514-54417533 | MS.gene45346:intron | 45.0% |
| !! | GCCGGAGATGATGATGATTT+TGG | - | chr4.3:54417246-54417265 | MS.gene45346:CDS | 45.0% |
| !! | TGATTTTGGAGGGGTGAGAA+TGG | - | chr4.3:54417260-54417279 | MS.gene45346:CDS | 45.0% |
| !! | TTCAACTTCACTGGTGATGG+CGG | + | chr4.3:54417100-54417119 | None:intergenic | 45.0% |
| !!! | GTTGCGTGCACATTTTTTGC+AGG | + | chr4.3:54418037-54418056 | None:intergenic | 45.0% |
| AAACTCTCCTCCATGAGGAG+GGG | - | chr4.3:54419061-54419080 | MS.gene45346:CDS | 50.0% | |
| AACTGGACCACTAACCGTAG+GGG | + | chr4.3:54418833-54418852 | None:intergenic | 50.0% | |
| AGGGGCAAAATGGGAAAAGC+AGG | - | chr4.3:54417367-54417386 | MS.gene45346:intron | 50.0% | |
| ATCTTAAGGTGGGCCTGTTG+CGG | - | chr4.3:54418230-54418249 | MS.gene45346:intron | 50.0% | |
| CAACTGGACCACTAACCGTA+GGG | + | chr4.3:54418834-54418853 | None:intergenic | 50.0% | |
| CGCGACGTCTATAATAAGCG+GGG | + | chr4.3:54418392-54418411 | None:intergenic | 50.0% | |
| GAAACTCTCCTCCATGAGGA+GGG | - | chr4.3:54419060-54419079 | MS.gene45346:CDS | 50.0% | |
| GAGATCATGGTTGAGAGGGA+AGG | - | chr4.3:54418484-54418503 | MS.gene45346:intron | 50.0% | |
| TCAACTGGACCACTAACCGT+AGG | + | chr4.3:54418835-54418854 | None:intergenic | 50.0% | |
| TGTCGCAAACACTGCACTTG+TGG | + | chr4.3:54417123-54417142 | None:intergenic | 50.0% | |
| ! | CTAACAGAGCACTTTGACGG+AGG | - | chr4.3:54417517-54417536 | MS.gene45346:intron | 50.0% |
| ! | GAACTGTCGTTGGTTGCATC+TGG | - | chr4.3:54418588-54418607 | MS.gene45346:intron | 50.0% |
| ! | GTCCCTGAATTTTCACGCGT+CGG | + | chr4.3:54417615-54417634 | None:intergenic | 50.0% |
| ACACAATCCCCTCCTCATGG+AGG | + | chr4.3:54419071-54419090 | None:intergenic | 55.0% | |
| AGCGGGAAGGAGAAGGTTCA+AGG | - | chr4.3:54417293-54417312 | MS.gene45346:CDS | 55.0% | |
| AGGCTGTGAGTTCCCTGTTG+AGG | - | chr4.3:54418504-54418523 | MS.gene45346:intron | 55.0% | |
| ATCTCCGGCGATTCTGACGT+TGG | + | chr4.3:54417235-54417254 | None:intergenic | 55.0% | |
| CACCCGCACGTAATAGCCAA+AGG | + | chr4.3:54418428-54418447 | None:intergenic | 55.0% | |
| CATGTGTCCCCTACGGTTAG+TGG | - | chr4.3:54418823-54418842 | MS.gene45346:intron | 55.0% | |
| CGAAACTCTCCTCCATGAGG+AGG | - | chr4.3:54419059-54419078 | MS.gene45346:CDS | 55.0% | |
| CGCACAAGGTGCACGACAAA+GGG | - | chr4.3:54418641-54418660 | MS.gene45346:intron | 55.0% | |
| CTGTGAGTTCCCTGTTGAGG+TGG | - | chr4.3:54418507-54418526 | MS.gene45346:intron | 55.0% | |
| GCTGTGTTGTCTTGTACGCG+TGG | + | chr4.3:54417473-54417492 | None:intergenic | 55.0% | |
| GGACTGCGAGAAATCGCACA+AGG | - | chr4.3:54418627-54418646 | MS.gene45346:intron | 55.0% | |
| GGCCGACGCGTGAAAATTCA+GGG | - | chr4.3:54417610-54417629 | MS.gene45346:intron | 55.0% | |
| GTCTTGTACGCGTGGCAAGA+AGG | + | chr4.3:54417465-54417484 | None:intergenic | 55.0% | |
| TCCATCCATGCGCATGAGTG+AGG | + | chr4.3:54418297-54418316 | None:intergenic | 55.0% | |
| TCGCACAAGGTGCACGACAA+AGG | - | chr4.3:54418640-54418659 | MS.gene45346:intron | 55.0% | |
| TGGCCGACGCGTGAAAATTC+AGG | - | chr4.3:54417609-54417628 | MS.gene45346:intron | 55.0% | |
| TGGCTATTACGTGCGGGTGT+TGG | - | chr4.3:54418429-54418448 | MS.gene45346:intron | 55.0% | |
| !! | CTATTACGTGCGGGTGTTGG+TGG | - | chr4.3:54418432-54418451 | MS.gene45346:intron | 55.0% |
| !! | GTGCGGGTGTTGGTGGATAT+AGG | - | chr4.3:54418439-54418458 | MS.gene45346:intron | 55.0% |
| GCCTCACTCATGCGCATGGA+TGG | - | chr4.3:54418293-54418312 | MS.gene45346:intron | 60.0% | |
| TGCAGGGCGACATGTCAGCA+TGG | - | chr4.3:54417494-54417513 | MS.gene45346:intron | 60.0% | |
| !! | GGTGATGGCGGCAACTGCAA+CGG | + | chr4.3:54417088-54417107 | None:intergenic | 60.0% |
| ACCAACGGGAGAGCCGCAAC+AGG | + | chr4.3:54418246-54418265 | None:intergenic | 65.0% | |
| CAGCGCCTCACTCATGCGCA+TGG | - | chr4.3:54418289-54418308 | MS.gene45346:intron | 65.0% | |
| ! | GTCTGCTCAGGTGCCGCAGA+TGG | + | chr4.3:54418796-54418815 | None:intergenic | 65.0% |
| GCCTGTTGCGGCTCTCCCGT+TGG | - | chr4.3:54418242-54418261 | MS.gene45346:intron | 70.0% | |
| GCGGCTCTCCCGTTGGTCCA+AGG | - | chr4.3:54418249-54418268 | MS.gene45346:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 54416998 | 54419092 | 54416998 | ID=MS.gene45346 |
| chr4.3 | mRNA | 54416998 | 54419092 | 54416998 | ID=MS.gene45346.t1;Parent=MS.gene45346 |
| chr4.3 | exon | 54418900 | 54419092 | 54418900 | ID=MS.gene45346.t1.exon1;Parent=MS.gene45346.t1 |
| chr4.3 | CDS | 54418900 | 54419092 | 54418900 | ID=cds.MS.gene45346.t1;Parent=MS.gene45346.t1 |
| chr4.3 | exon | 54416998 | 54417344 | 54416998 | ID=MS.gene45346.t1.exon2;Parent=MS.gene45346.t1 |
| chr4.3 | CDS | 54416998 | 54417344 | 54416998 | ID=cds.MS.gene45346.t1;Parent=MS.gene45346.t1 |
| Gene Sequence |
| Protein sequence |
