Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45452.t1 | XP_013467842.1 | 86.8 | 288 | 16 | 1 | 1 | 266 | 1 | 288 | 1.40E-143 | 518.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45452.t1 | Q9SVC5 | 40.4 | 275 | 109 | 7 | 5 | 265 | 13 | 246 | 3.0e-41 | 170.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45452.t1 | A0A072VIR1 | 86.8 | 288 | 16 | 1 | 1 | 266 | 1 | 288 | 1.0e-143 | 518.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene45452.t1 | TF | C2C2-Dof |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45452.t1 | MTR_1g056810 | 86.806 | 288 | 16 | 1 | 1 | 266 | 1 | 288 | 1.07e-180 | 498 |
| MS.gene45452.t1 | MTR_3g090430 | 60.800 | 125 | 39 | 4 | 3 | 120 | 41 | 162 | 6.25e-43 | 149 |
| MS.gene45452.t1 | MTR_2g093220 | 90.741 | 54 | 5 | 0 | 13 | 66 | 41 | 94 | 1.22e-30 | 116 |
| MS.gene45452.t1 | MTR_3g091820 | 87.037 | 54 | 7 | 0 | 13 | 66 | 44 | 97 | 1.22e-29 | 113 |
| MS.gene45452.t1 | MTR_8g027295 | 87.037 | 54 | 7 | 0 | 13 | 66 | 25 | 78 | 1.63e-29 | 112 |
| MS.gene45452.t1 | MTR_8g479350 | 81.034 | 58 | 11 | 0 | 8 | 65 | 64 | 121 | 6.24e-29 | 112 |
| MS.gene45452.t1 | MTR_4g088580 | 84.906 | 53 | 8 | 0 | 14 | 66 | 57 | 109 | 6.86e-29 | 113 |
| MS.gene45452.t1 | MTR_4g461080 | 90.196 | 51 | 5 | 0 | 14 | 64 | 31 | 81 | 1.39e-28 | 110 |
| MS.gene45452.t1 | MTR_4g063780 | 77.586 | 58 | 13 | 0 | 14 | 71 | 77 | 134 | 1.97e-28 | 111 |
| MS.gene45452.t1 | MTR_8g068210 | 61.905 | 84 | 26 | 1 | 9 | 92 | 29 | 106 | 1.98e-28 | 111 |
| MS.gene45452.t1 | MTR_1g077600 | 74.194 | 62 | 16 | 0 | 6 | 67 | 37 | 98 | 2.28e-28 | 109 |
| MS.gene45452.t1 | MTR_1g077600 | 74.194 | 62 | 16 | 0 | 6 | 67 | 37 | 98 | 2.73e-28 | 109 |
| MS.gene45452.t1 | MTR_7g024670 | 70.149 | 67 | 19 | 1 | 14 | 79 | 79 | 145 | 5.29e-28 | 110 |
| MS.gene45452.t1 | MTR_2g096740 | 59.036 | 83 | 30 | 2 | 14 | 92 | 79 | 161 | 6.07e-28 | 108 |
| MS.gene45452.t1 | MTR_2g096740 | 59.036 | 83 | 30 | 2 | 14 | 92 | 64 | 146 | 6.45e-28 | 108 |
| MS.gene45452.t1 | MTR_7g059400 | 81.132 | 53 | 10 | 0 | 14 | 66 | 78 | 130 | 7.91e-28 | 109 |
| MS.gene45452.t1 | MTR_5g031440 | 87.755 | 49 | 6 | 0 | 14 | 62 | 45 | 93 | 1.20e-26 | 106 |
| MS.gene45452.t1 | MTR_3g077750 | 81.132 | 53 | 10 | 0 | 10 | 62 | 59 | 111 | 1.79e-26 | 105 |
| MS.gene45452.t1 | MTR_4g022370 | 79.245 | 53 | 11 | 0 | 14 | 66 | 84 | 136 | 2.30e-26 | 105 |
| MS.gene45452.t1 | MTR_2g014060 | 84.000 | 50 | 8 | 0 | 14 | 63 | 27 | 76 | 2.38e-26 | 105 |
| MS.gene45452.t1 | MTR_8g079060 | 61.972 | 71 | 26 | 1 | 14 | 83 | 31 | 101 | 1.81e-25 | 100 |
| MS.gene45452.t1 | MTR_4g109980 | 85.714 | 49 | 7 | 0 | 14 | 62 | 42 | 90 | 1.87e-25 | 102 |
| MS.gene45452.t1 | MTR_8g015840 | 72.414 | 58 | 16 | 0 | 14 | 71 | 22 | 79 | 2.65e-25 | 100 |
| MS.gene45452.t1 | MTR_3g435480 | 65.625 | 64 | 19 | 1 | 14 | 77 | 138 | 198 | 3.26e-25 | 103 |
| MS.gene45452.t1 | MTR_4g089095 | 75.926 | 54 | 12 | 1 | 13 | 66 | 51 | 103 | 1.12e-24 | 100 |
| MS.gene45452.t1 | MTR_4g089095 | 75.926 | 54 | 12 | 1 | 13 | 66 | 17 | 69 | 1.25e-24 | 99.4 |
| MS.gene45452.t1 | MTR_2g059540 | 78.431 | 51 | 11 | 0 | 10 | 60 | 29 | 79 | 2.27e-24 | 97.4 |
| MS.gene45452.t1 | MTR_2g014170 | 85.106 | 47 | 7 | 0 | 14 | 60 | 47 | 93 | 2.42e-24 | 99.8 |
| MS.gene45452.t1 | MTR_2g013370 | 74.074 | 54 | 13 | 1 | 13 | 66 | 47 | 99 | 3.77e-24 | 98.6 |
| MS.gene45452.t1 | MTR_6g012450 | 51.613 | 93 | 36 | 3 | 6 | 98 | 131 | 214 | 2.70e-23 | 99.0 |
| MS.gene45452.t1 | MTR_7g010950 | 66.667 | 60 | 19 | 1 | 6 | 65 | 130 | 188 | 4.21e-23 | 98.2 |
| MS.gene45452.t1 | MTR_4g082060 | 58.333 | 72 | 26 | 2 | 6 | 77 | 117 | 184 | 2.49e-22 | 95.9 |
| MS.gene45452.t1 | MTR_2g016030 | 64.516 | 62 | 21 | 1 | 4 | 65 | 40 | 100 | 2.60e-22 | 90.5 |
| MS.gene45452.t1 | MTR_5g041420 | 50.000 | 80 | 36 | 2 | 6 | 82 | 133 | 211 | 5.87e-22 | 93.2 |
| MS.gene45452.t1 | MTR_7g086780 | 67.308 | 52 | 17 | 0 | 14 | 65 | 101 | 152 | 2.00e-21 | 93.2 |
| MS.gene45452.t1 | MTR_8g044220 | 35.625 | 160 | 89 | 6 | 6 | 163 | 113 | 260 | 2.05e-21 | 93.2 |
| MS.gene45452.t1 | MTR_6g027450 | 38.411 | 151 | 76 | 4 | 14 | 154 | 91 | 234 | 2.22e-21 | 92.0 |
| MS.gene45452.t1 | MTR_5g041530 | 56.338 | 71 | 30 | 1 | 2 | 72 | 131 | 200 | 8.31e-21 | 90.9 |
| MS.gene45452.t1 | MTR_5g041380 | 54.667 | 75 | 33 | 1 | 1 | 75 | 117 | 190 | 1.63e-20 | 90.1 |
| MS.gene45452.t1 | MTR_6g027460 | 43.878 | 98 | 44 | 2 | 14 | 105 | 98 | 190 | 2.52e-20 | 89.4 |
| MS.gene45452.t1 | MTR_5g041400 | 59.677 | 62 | 25 | 0 | 14 | 75 | 121 | 182 | 6.05e-20 | 88.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45452.t1 | AT3G52440 | 38.321 | 274 | 118 | 5 | 5 | 266 | 32 | 266 | 2.46e-49 | 164 |
| MS.gene45452.t1 | AT3G52440 | 65.217 | 115 | 29 | 2 | 5 | 114 | 13 | 121 | 2.56e-45 | 153 |
| MS.gene45452.t1 | AT1G21340 | 42.135 | 178 | 94 | 4 | 11 | 186 | 37 | 207 | 1.67e-36 | 130 |
| MS.gene45452.t1 | AT5G60200 | 47.518 | 141 | 63 | 3 | 9 | 143 | 52 | 187 | 4.22e-34 | 124 |
| MS.gene45452.t1 | AT3G61850 | 77.273 | 66 | 15 | 0 | 1 | 66 | 51 | 116 | 2.29e-31 | 117 |
| MS.gene45452.t1 | AT3G61850 | 77.273 | 66 | 15 | 0 | 1 | 66 | 51 | 116 | 2.29e-31 | 117 |
| MS.gene45452.t1 | AT3G61850 | 77.273 | 66 | 15 | 0 | 1 | 66 | 51 | 116 | 3.22e-31 | 118 |
| MS.gene45452.t1 | AT3G61850 | 77.273 | 66 | 15 | 0 | 1 | 66 | 63 | 128 | 3.31e-31 | 117 |
| MS.gene45452.t1 | AT3G61850 | 77.273 | 66 | 15 | 0 | 1 | 66 | 63 | 128 | 4.74e-31 | 117 |
| MS.gene45452.t1 | AT2G28510 | 50.000 | 114 | 49 | 1 | 13 | 118 | 49 | 162 | 2.14e-30 | 115 |
| MS.gene45452.t1 | AT4G24060 | 88.889 | 54 | 6 | 0 | 13 | 66 | 54 | 107 | 3.14e-30 | 116 |
| MS.gene45452.t1 | AT1G07640 | 79.310 | 58 | 12 | 0 | 14 | 71 | 79 | 136 | 1.84e-29 | 114 |
| MS.gene45452.t1 | AT1G07640 | 79.310 | 58 | 12 | 0 | 14 | 71 | 23 | 80 | 1.98e-29 | 112 |
| MS.gene45452.t1 | AT1G07640 | 79.310 | 58 | 12 | 0 | 14 | 71 | 87 | 144 | 2.41e-29 | 113 |
| MS.gene45452.t1 | AT2G37590 | 84.906 | 53 | 8 | 0 | 14 | 66 | 91 | 143 | 1.36e-28 | 111 |
| MS.gene45452.t1 | AT3G55370 | 77.966 | 59 | 13 | 0 | 13 | 71 | 122 | 180 | 5.55e-28 | 110 |
| MS.gene45452.t1 | AT3G55370 | 77.966 | 59 | 13 | 0 | 13 | 71 | 77 | 135 | 5.69e-28 | 109 |
| MS.gene45452.t1 | AT4G00940 | 85.185 | 54 | 8 | 0 | 13 | 66 | 69 | 122 | 6.15e-28 | 108 |
| MS.gene45452.t1 | AT4G00940 | 85.185 | 54 | 8 | 0 | 13 | 66 | 69 | 122 | 6.15e-28 | 108 |
| MS.gene45452.t1 | AT4G00940 | 85.185 | 54 | 8 | 0 | 13 | 66 | 69 | 122 | 6.15e-28 | 108 |
| MS.gene45452.t1 | AT3G55370 | 77.966 | 59 | 13 | 0 | 13 | 71 | 77 | 135 | 6.21e-28 | 110 |
| MS.gene45452.t1 | AT5G02460 | 81.132 | 53 | 10 | 0 | 14 | 66 | 97 | 149 | 1.96e-27 | 109 |
| MS.gene45452.t1 | AT3G45610 | 50.000 | 112 | 48 | 4 | 14 | 118 | 42 | 152 | 1.98e-27 | 106 |
| MS.gene45452.t1 | AT5G65590 | 79.245 | 53 | 11 | 0 | 14 | 66 | 43 | 95 | 2.28e-27 | 107 |
| MS.gene45452.t1 | AT5G60850 | 72.581 | 62 | 17 | 0 | 11 | 72 | 50 | 111 | 2.35e-27 | 107 |
| MS.gene45452.t1 | AT2G46590 | 82.759 | 58 | 9 | 1 | 3 | 59 | 58 | 115 | 3.27e-27 | 108 |
| MS.gene45452.t1 | AT4G38000 | 51.020 | 98 | 46 | 1 | 7 | 104 | 36 | 131 | 3.42e-27 | 105 |
| MS.gene45452.t1 | AT2G46590 | 93.617 | 47 | 3 | 0 | 13 | 59 | 81 | 127 | 3.92e-27 | 108 |
| MS.gene45452.t1 | AT2G28810 | 82.000 | 50 | 9 | 0 | 14 | 63 | 79 | 128 | 4.30e-27 | 107 |
| MS.gene45452.t1 | AT2G28810 | 82.000 | 50 | 9 | 0 | 14 | 63 | 96 | 145 | 6.52e-27 | 107 |
| MS.gene45452.t1 | AT1G28310 | 81.132 | 53 | 10 | 0 | 14 | 66 | 29 | 81 | 1.21e-26 | 105 |
| MS.gene45452.t1 | AT1G28310 | 81.132 | 53 | 10 | 0 | 14 | 66 | 53 | 105 | 1.72e-26 | 105 |
| MS.gene45452.t1 | AT1G51700 | 72.414 | 58 | 16 | 0 | 14 | 71 | 35 | 92 | 2.75e-26 | 102 |
| MS.gene45452.t1 | AT3G21270 | 84.314 | 51 | 8 | 0 | 14 | 64 | 31 | 81 | 4.33e-26 | 102 |
| MS.gene45452.t1 | AT5G62940 | 85.714 | 49 | 7 | 0 | 14 | 62 | 75 | 123 | 4.87e-26 | 105 |
| MS.gene45452.t1 | AT4G21050 | 77.358 | 53 | 12 | 0 | 14 | 66 | 26 | 78 | 7.51e-26 | 101 |
| MS.gene45452.t1 | AT1G64620 | 87.755 | 49 | 6 | 0 | 13 | 61 | 50 | 98 | 1.72e-25 | 103 |
| MS.gene45452.t1 | AT3G50410 | 75.472 | 53 | 13 | 0 | 14 | 66 | 32 | 84 | 1.58e-24 | 99.0 |
| MS.gene45452.t1 | AT5G62430 | 52.747 | 91 | 40 | 2 | 6 | 96 | 49 | 136 | 1.62e-24 | 99.8 |
| MS.gene45452.t1 | AT1G69570 | 46.610 | 118 | 42 | 2 | 14 | 116 | 134 | 245 | 2.83e-24 | 100 |
| MS.gene45452.t1 | AT1G29160 | 61.538 | 65 | 24 | 1 | 1 | 65 | 52 | 115 | 1.66e-23 | 94.4 |
| MS.gene45452.t1 | AT4G21040 | 70.492 | 61 | 17 | 1 | 14 | 73 | 27 | 87 | 6.42e-23 | 94.4 |
| MS.gene45452.t1 | AT5G66940 | 68.519 | 54 | 17 | 0 | 13 | 66 | 33 | 86 | 8.77e-23 | 93.6 |
| MS.gene45452.t1 | AT2G34140 | 71.154 | 52 | 15 | 0 | 14 | 65 | 60 | 111 | 9.69e-23 | 92.0 |
| MS.gene45452.t1 | AT3G47500 | 66.667 | 60 | 19 | 1 | 6 | 65 | 105 | 163 | 9.96e-23 | 97.1 |
| MS.gene45452.t1 | AT1G47655 | 78.723 | 47 | 10 | 0 | 14 | 60 | 31 | 77 | 1.89e-22 | 92.4 |
| MS.gene45452.t1 | AT1G26790 | 50.467 | 107 | 30 | 4 | 6 | 97 | 106 | 204 | 2.74e-22 | 95.1 |
| MS.gene45452.t1 | AT5G39660 | 66.667 | 60 | 19 | 1 | 6 | 65 | 133 | 191 | 4.75e-22 | 95.1 |
| MS.gene45452.t1 | AT5G39660 | 66.667 | 60 | 19 | 1 | 6 | 65 | 133 | 191 | 4.75e-22 | 95.1 |
| MS.gene45452.t1 | AT5G39660 | 66.667 | 60 | 19 | 1 | 6 | 65 | 133 | 191 | 4.75e-22 | 95.1 |
| MS.gene45452.t1 | AT4G21080 | 67.213 | 61 | 19 | 1 | 14 | 73 | 27 | 87 | 1.02e-21 | 91.3 |
| MS.gene45452.t1 | AT4G21030 | 60.000 | 50 | 20 | 0 | 14 | 63 | 23 | 72 | 3.94e-14 | 69.7 |
Find 51 sgRNAs with CRISPR-Local
Find 62 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCAATGCAAGATCAATAT+TGG | 0.225605 | 1.2:-44771073 | None:intergenic |
| CAACCTCCACCACCATTTCT+TGG | 0.233577 | 1.2:+44771489 | MS.gene45452:CDS |
| GAACCACATCTTGGACAATT+TGG | 0.236842 | 1.2:-44770736 | None:intergenic |
| CAGACTTGTTAATCGGTAAT+TGG | 0.248583 | 1.2:+44771532 | MS.gene45452:CDS |
| GTTGTGGATGGTAATTGTTC+TGG | 0.295167 | 1.2:-44771267 | None:intergenic |
| GTTAATCATCATTTCAGAAT+TGG | 0.308733 | 1.2:-44771448 | None:intergenic |
| GAAATATTAGTACTCAAAAT+AGG | 0.332469 | 1.2:-44771018 | None:intergenic |
| ATCCTTGTCTAGAAAATTCA+AGG | 0.352452 | 1.2:+44771163 | MS.gene45452:CDS |
| CATGATGCAGACTTGTTAAT+CGG | 0.365024 | 1.2:+44771525 | MS.gene45452:CDS |
| TGATCGGAACTATGAGAATC+AGG | 0.377500 | 1.2:-44771120 | None:intergenic |
| GCAAAGGATGCAGAAGGTAT+TGG | 0.386602 | 1.2:+44770818 | MS.gene45452:CDS |
| TTCATCTTCTAGCTCCTCAT+TGG | 0.412030 | 1.2:+44771038 | MS.gene45452:CDS |
| ACCAATGCAAGATCAATATT+GGG | 0.430318 | 1.2:-44771072 | None:intergenic |
| GCATCCCTTGGAAAATCAAA+AGG | 0.439777 | 1.2:-44771558 | None:intergenic |
| CTCAGAAATGTTCCTGTTGG+TGG | 0.463083 | 1.2:+44770856 | MS.gene45452:CDS |
| GGAGGTTGAGTGACTTGAAA+TGG | 0.465039 | 1.2:-44771474 | None:intergenic |
| AATTAGAACTTGGTTTCAAA+GGG | 0.465903 | 1.2:+44771229 | MS.gene45452:CDS |
| TGCAGAAGGTATTGGACAAA+AGG | 0.474750 | 1.2:+44770826 | MS.gene45452:CDS |
| TTTCTGCAGCCACCACCAAC+AGG | 0.485924 | 1.2:-44770868 | None:intergenic |
| AATTTGTCTGAATTAGAACT+TGG | 0.496339 | 1.2:+44771219 | MS.gene45452:CDS |
| ACCCAATATTGATCTTGCAT+TGG | 0.497183 | 1.2:+44771071 | MS.gene45452:CDS |
| TCTGCATCATGAATTTGATC+AGG | 0.499238 | 1.2:-44771513 | None:intergenic |
| GTGTTTGAAGAACCACATCT+TGG | 0.501582 | 1.2:-44770745 | None:intergenic |
| AGAAATGTTCCTGTTGGTGG+TGG | 0.504532 | 1.2:+44770859 | MS.gene45452:CDS |
| ATTTGATCAGGACCAAGAAA+TGG | 0.507530 | 1.2:-44771501 | None:intergenic |
| GAATCCTCTTCACCTGGTAA+AGG | 0.513411 | 1.2:-44771399 | None:intergenic |
| GAATTAGAACTTGGTTTCAA+AGG | 0.520155 | 1.2:+44771228 | MS.gene45452:CDS |
| ACTAAAATGTGTTACTGTTG+TGG | 0.520461 | 1.2:-44771283 | None:intergenic |
| AGAATCAATTAAGCATCCCT+TGG | 0.523237 | 1.2:-44771570 | None:intergenic |
| TTTGAGCTACCACCTTTACC+AGG | 0.542560 | 1.2:+44771387 | MS.gene45452:CDS |
| GGACCAAGAAATGGTGGTGG+AGG | 0.554806 | 1.2:-44771492 | None:intergenic |
| TCAAGGCTATCGATTATTGA+AGG | 0.555461 | 1.2:+44771180 | MS.gene45452:CDS |
| CATCCCTTGGAAAATCAAAA+GGG | 0.555636 | 1.2:-44771557 | None:intergenic |
| ACCACCTTTACCAGGTGAAG+AGG | 0.557951 | 1.2:+44771395 | MS.gene45452:CDS |
| TCCTCTTCACCTGGTAAAGG+TGG | 0.570460 | 1.2:-44771396 | None:intergenic |
| CACCAACAGGAACATTTCTG+AGG | 0.582266 | 1.2:-44770855 | None:intergenic |
| ATGCAGACATGGAGAGTGAG+TGG | 0.591147 | 1.2:+44770695 | None:intergenic |
| TCCCTCAGAAATGTTCCTGT+TGG | 0.593993 | 1.2:+44770853 | MS.gene45452:CDS |
| GTTGAGTGACTTGAAATGGA+AGG | 0.605356 | 1.2:-44771470 | None:intergenic |
| TCAGGACCAAGAAATGGTGG+TGG | 0.616492 | 1.2:-44771495 | None:intergenic |
| ACCAACAGGAACATTTCTGA+GGG | 0.622749 | 1.2:-44770854 | None:intergenic |
| TCACCAAATTGTCCAAGATG+TGG | 0.624013 | 1.2:+44770733 | MS.gene45452:CDS |
| CCTCACAAGATCATGTATTG+TGG | 0.626052 | 1.2:+44771424 | MS.gene45452:CDS |
| GAGGATGAATCCTCTTCACC+TGG | 0.631134 | 1.2:-44771405 | None:intergenic |
| GGGTCTATCATTCACCAATG+AGG | 0.645215 | 1.2:-44771052 | None:intergenic |
| AGAAGGTATTGGACAAAAGG+TGG | 0.645256 | 1.2:+44770829 | MS.gene45452:CDS |
| TGATCAGGACCAAGAAATGG+TGG | 0.649067 | 1.2:-44771498 | None:intergenic |
| AAATGTGTTACTGTTGTGGA+TGG | 0.658240 | 1.2:-44771279 | None:intergenic |
| CCACAATACATGATCTTGTG+AGG | 0.668635 | 1.2:-44771424 | None:intergenic |
| ACTACAGCTTAACTCAACCA+AGG | 0.682302 | 1.2:+44770788 | MS.gene45452:CDS |
| AGGCTATCGATTATTGAAGG+CGG | 0.702387 | 1.2:+44771183 | MS.gene45452:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAATATTAGTACTCAAAAT+AGG | - | chr1.2:44771021-44771040 | None:intergenic | 20.0% |
| !!! | ATCAATTCTATCTTTTTGAA+GGG | - | chr1.2:44771328-44771347 | None:intergenic | 20.0% |
| ! | AATTAGAACTTGGTTTCAAA+GGG | + | chr1.2:44771229-44771248 | MS.gene45452:CDS | 25.0% |
| ! | AATTTGTCTGAATTAGAACT+TGG | + | chr1.2:44771219-44771238 | MS.gene45452:CDS | 25.0% |
| ! | GTTAATCATCATTTCAGAAT+TGG | - | chr1.2:44771451-44771470 | None:intergenic | 25.0% |
| !! | GATCAATTCTATCTTTTTGA+AGG | - | chr1.2:44771329-44771348 | None:intergenic | 25.0% |
| !!! | ATTTGTTTTTCGCATTTGAT+CGG | - | chr1.2:44771139-44771158 | None:intergenic | 25.0% |
| AACCAATGCAAGATCAATAT+TGG | - | chr1.2:44771076-44771095 | None:intergenic | 30.0% | |
| ACCAATGCAAGATCAATATT+GGG | - | chr1.2:44771075-44771094 | None:intergenic | 30.0% | |
| ATCCTTGTCTAGAAAATTCA+AGG | + | chr1.2:44771163-44771182 | MS.gene45452:CDS | 30.0% | |
| GAATTAGAACTTGGTTTCAA+AGG | + | chr1.2:44771228-44771247 | MS.gene45452:CDS | 30.0% | |
| ! | ACTAAAATGTGTTACTGTTG+TGG | - | chr1.2:44771286-44771305 | None:intergenic | 30.0% |
| ! | TCTAAAGTAGTGTGAGAATT+AGG | - | chr1.2:44770964-44770983 | None:intergenic | 30.0% |
| ACCCAATATTGATCTTGCAT+TGG | + | chr1.2:44771071-44771090 | MS.gene45452:CDS | 35.0% | |
| ATTTGATCAGGACCAAGAAA+TGG | - | chr1.2:44771504-44771523 | None:intergenic | 35.0% | |
| CATCCCTTGGAAAATCAAAA+GGG | - | chr1.2:44771560-44771579 | None:intergenic | 35.0% | |
| CATCCTTTGCAAAAATACCT+TGG | - | chr1.2:44770808-44770827 | None:intergenic | 35.0% | |
| TCTGCATCATGAATTTGATC+AGG | - | chr1.2:44771516-44771535 | None:intergenic | 35.0% | |
| TTTGAAAGTGAGAGAGTCAA+AGG | - | chr1.2:44770935-44770954 | None:intergenic | 35.0% | |
| ! | AAATGTGTTACTGTTGTGGA+TGG | - | chr1.2:44771282-44771301 | None:intergenic | 35.0% |
| ! | AGCCTTGAATTTTCTAGACA+AGG | - | chr1.2:44771168-44771187 | None:intergenic | 35.0% |
| ! | ATTTTTGCAAAGGATGCAGA+AGG | + | chr1.2:44770812-44770831 | MS.gene45452:CDS | 35.0% |
| ! | TCAAGGCTATCGATTATTGA+AGG | + | chr1.2:44771180-44771199 | MS.gene45452:CDS | 35.0% |
| !! | CAACCAAGGTATTTTTGCAA+AGG | + | chr1.2:44770802-44770821 | MS.gene45452:CDS | 35.0% |
| !! | CAGACTTGTTAATCGGTAAT+TGG | + | chr1.2:44771532-44771551 | MS.gene45452:CDS | 35.0% |
| !! | CATGATGCAGACTTGTTAAT+CGG | + | chr1.2:44771525-44771544 | MS.gene45452:CDS | 35.0% |
| ACCAACAGGAACATTTCTGA+GGG | - | chr1.2:44770857-44770876 | None:intergenic | 40.0% | |
| ACTACAGCTTAACTCAACCA+AGG | + | chr1.2:44770788-44770807 | MS.gene45452:CDS | 40.0% | |
| CCACAATACATGATCTTGTG+AGG | - | chr1.2:44771427-44771446 | None:intergenic | 40.0% | |
| CCTCACAAGATCATGTATTG+TGG | + | chr1.2:44771424-44771443 | MS.gene45452:CDS | 40.0% | |
| GAACCACATCTTGGACAATT+TGG | - | chr1.2:44770739-44770758 | None:intergenic | 40.0% | |
| GCATCCCTTGGAAAATCAAA+AGG | - | chr1.2:44771561-44771580 | None:intergenic | 40.0% | |
| GTGTTTGAAGAACCACATCT+TGG | - | chr1.2:44770748-44770767 | None:intergenic | 40.0% | |
| GTTGAGTGACTTGAAATGGA+AGG | - | chr1.2:44771473-44771492 | None:intergenic | 40.0% | |
| GTTGTGGATGGTAATTGTTC+TGG | - | chr1.2:44771270-44771289 | None:intergenic | 40.0% | |
| TCACCAAATTGTCCAAGATG+TGG | + | chr1.2:44770733-44770752 | MS.gene45452:CDS | 40.0% | |
| TGATCGGAACTATGAGAATC+AGG | - | chr1.2:44771123-44771142 | None:intergenic | 40.0% | |
| ! | AGGCTATCGATTATTGAAGG+CGG | + | chr1.2:44771183-44771202 | MS.gene45452:CDS | 40.0% |
| !! | AGAAGGTATTGGACAAAAGG+TGG | + | chr1.2:44770829-44770848 | MS.gene45452:CDS | 40.0% |
| !! | GAGAATCAGGCTTTTGATTG+AGG | - | chr1.2:44771110-44771129 | None:intergenic | 40.0% |
| !! | TGCAGAAGGTATTGGACAAA+AGG | + | chr1.2:44770826-44770845 | MS.gene45452:CDS | 40.0% |
| !! | TTCATCTTCTAGCTCCTCAT+TGG | + | chr1.2:44771038-44771057 | MS.gene45452:CDS | 40.0% |
| !!! | GAGCCCTTTTGATTTTCCAA+GGG | + | chr1.2:44771554-44771573 | MS.gene45452:CDS | 40.0% |
| CACCAACAGGAACATTTCTG+AGG | - | chr1.2:44770858-44770877 | None:intergenic | 45.0% | |
| CTCAGAAATGTTCCTGTTGG+TGG | + | chr1.2:44770856-44770875 | MS.gene45452:CDS | 45.0% | |
| GAATCCTCTTCACCTGGTAA+AGG | - | chr1.2:44771402-44771421 | None:intergenic | 45.0% | |
| GGAGGTTGAGTGACTTGAAA+TGG | - | chr1.2:44771477-44771496 | None:intergenic | 45.0% | |
| GGCTGCAGAAAAAACAGAAG+AGG | + | chr1.2:44770880-44770899 | MS.gene45452:CDS | 45.0% | |
| GGGTCTATCATTCACCAATG+AGG | - | chr1.2:44771055-44771074 | None:intergenic | 45.0% | |
| TCCCTCAGAAATGTTCCTGT+TGG | + | chr1.2:44770853-44770872 | MS.gene45452:CDS | 45.0% | |
| TGATCAGGACCAAGAAATGG+TGG | - | chr1.2:44771501-44771520 | None:intergenic | 45.0% | |
| TTTGAGCTACCACCTTTACC+AGG | + | chr1.2:44771387-44771406 | MS.gene45452:CDS | 45.0% | |
| ! | AGAAATGTTCCTGTTGGTGG+TGG | + | chr1.2:44770859-44770878 | MS.gene45452:CDS | 45.0% |
| ! | GCAAAGGATGCAGAAGGTAT+TGG | + | chr1.2:44770818-44770837 | MS.gene45452:CDS | 45.0% |
| !!! | GGAGCCCTTTTGATTTTCCA+AGG | + | chr1.2:44771553-44771572 | MS.gene45452:CDS | 45.0% |
| ACCACCTTTACCAGGTGAAG+AGG | + | chr1.2:44771395-44771414 | MS.gene45452:CDS | 50.0% | |
| CAACCTCCACCACCATTTCT+TGG | + | chr1.2:44771489-44771508 | MS.gene45452:CDS | 50.0% | |
| GAGGATGAATCCTCTTCACC+TGG | - | chr1.2:44771408-44771427 | None:intergenic | 50.0% | |
| TCAGGACCAAGAAATGGTGG+TGG | - | chr1.2:44771498-44771517 | None:intergenic | 50.0% | |
| TCCTCTTCACCTGGTAAAGG+TGG | - | chr1.2:44771399-44771418 | None:intergenic | 50.0% | |
| TTTCTGCAGCCACCACCAAC+AGG | - | chr1.2:44770871-44770890 | None:intergenic | 55.0% | |
| !! | GGACCAAGAAATGGTGGTGG+AGG | - | chr1.2:44771495-44771514 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 44770703 | 44771584 | 44770703 | ID=MS.gene45452 |
| chr1.2 | mRNA | 44770703 | 44771584 | 44770703 | ID=MS.gene45452.t1;Parent=MS.gene45452 |
| chr1.2 | exon | 44770703 | 44770901 | 44770703 | ID=MS.gene45452.t1.exon1;Parent=MS.gene45452.t1 |
| chr1.2 | CDS | 44770703 | 44770901 | 44770703 | ID=cds.MS.gene45452.t1;Parent=MS.gene45452.t1 |
| chr1.2 | exon | 44770983 | 44771584 | 44770983 | ID=MS.gene45452.t1.exon2;Parent=MS.gene45452.t1 |
| chr1.2 | CDS | 44770983 | 44771584 | 44770983 | ID=cds.MS.gene45452.t1;Parent=MS.gene45452.t1 |
| Gene Sequence |
| Protein sequence |