AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene45516

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45516.t1 MTR_2g097310 87.613 662 57 3 1 659 1 640 0.0 1149
MS.gene45516.t1 MTR_2g097390 81.231 666 95 5 1 659 1 643 0.0 1076
MS.gene45516.t1 MTR_2g097350 80.271 664 104 5 1 659 1 642 0.0 1053
MS.gene45516.t1 MTR_2g097380 79.394 495 53 5 170 659 113 563 0.0 794
MS.gene45516.t1 MTR_4g064160 61.697 436 155 5 234 659 253 686 0.0 563
MS.gene45516.t1 MTR_4g064120 42.948 631 313 17 46 659 28 628 2.92e-158 470
MS.gene45516.t1 MTR_4g064150 42.443 655 330 13 46 659 87 735 1.86e-156 469
MS.gene45516.t1 MTR_2g097410 50.435 460 205 10 216 659 291 743 2.92e-155 466
MS.gene45516.t1 MTR_4g064180 42.247 632 316 16 46 659 28 628 4.23e-154 459
MS.gene45516.t1 MTR_7g062120 50.761 394 188 3 270 659 351 742 1.78e-149 451
MS.gene45516.t1 MTR_2g097467 38.994 636 332 15 50 659 51 656 2.88e-145 437
MS.gene45516.t1 MTR_4g064200 48.423 444 204 6 236 659 214 652 4.33e-145 437
MS.gene45516.t1 MTR_2g097463 37.812 640 327 13 54 659 55 657 8.44e-143 431
MS.gene45516.t1 MTR_2g097473 39.252 642 322 15 50 659 51 656 8.64e-142 428
MS.gene45516.t1 MTR_5g097480 30.400 375 252 4 287 656 173 543 7.42e-61 213
MS.gene45516.t1 MTR_3g056110 28.996 538 346 15 138 656 21 541 1.80e-60 211
MS.gene45516.t1 MTR_4g133660 30.688 378 252 6 286 657 170 543 7.38e-58 204
MS.gene45516.t1 MTR_2g026250 30.026 383 257 5 282 656 216 595 8.37e-58 206
MS.gene45516.t1 MTR_2g082090 30.481 374 253 3 287 656 208 578 1.63e-56 201
MS.gene45516.t1 MTR_7g027190 31.088 386 233 7 291 656 300 672 2.41e-56 203
MS.gene45516.t1 MTR_3g089055 29.839 372 254 3 289 656 201 569 2.54e-54 195
MS.gene45516.t1 MTR_3g089055 29.839 372 254 3 289 656 196 564 3.27e-54 195
MS.gene45516.t1 MTR_5g094450 30.184 381 249 8 287 656 157 531 9.36e-54 193
MS.gene45516.t1 MTR_1g029420 29.570 372 255 3 289 656 223 591 3.12e-53 193
MS.gene45516.t1 MTR_8g442410 27.737 411 266 9 268 659 129 527 2.93e-48 178
MS.gene45516.t1 MTR_3g065980 30.184 381 236 8 292 656 173 539 1.77e-46 173
MS.gene45516.t1 MTR_7g074650 31.522 368 232 9 295 658 442 793 1.95e-46 176
MS.gene45516.t1 MTR_4g104020 27.441 379 254 8 291 656 149 519 4.84e-46 171
MS.gene45516.t1 MTR_4g102790 26.042 384 264 8 287 658 288 663 3.72e-44 168
MS.gene45516.t1 MTR_5g009080 26.077 441 260 9 277 656 42 477 3.68e-42 159
MS.gene45516.t1 MTR_3g022830 26.492 419 245 8 292 656 26 435 3.24e-40 153
MS.gene45516.t1 MTR_4g076140 25.117 426 254 7 291 656 48 468 4.23e-39 150
MS.gene45516.t1 MTR_4g097080 26.546 388 249 10 291 658 133 504 3.65e-38 148
MS.gene45516.t1 MTR_1g069725 27.556 450 296 14 218 656 32 462 4.53e-35 139
MS.gene45516.t1 MTR_2g089100 28.087 413 234 11 291 659 52 445 4.64e-35 139
MS.gene45516.t1 MTR_4g077760 27.419 372 244 9 296 656 198 554 6.80e-34 137
MS.gene45516.t1 MTR_2g034260 24.274 379 267 6 292 656 211 583 2.10e-33 135
MS.gene45516.t1 MTR_2g034250 25.594 379 263 7 292 656 211 584 4.03e-33 135
MS.gene45516.t1 MTR_5g015490 25.389 386 262 11 291 658 114 491 2.51e-31 128
MS.gene45516.t1 MTR_2g034280 24.403 377 267 7 292 656 204 574 2.86e-30 126
MS.gene45516.t1 MTR_1g096030 27.456 397 239 14 291 656 80 458 1.15e-29 123
MS.gene45516.t1 MTR_4g076020 27.273 374 233 11 295 659 88 431 2.22e-29 122
MS.gene45516.t1 MTR_7g057230 27.178 287 198 5 376 656 375 656 9.99e-28 119
MS.gene45516.t1 MTR_7g109580 24.802 379 268 9 286 656 184 553 2.28e-27 117
MS.gene45516.t1 MTR_6g047750 25.729 377 257 8 292 656 296 661 2.37e-26 114
MS.gene45516.t1 MTR_2g099110 26.667 390 253 11 291 658 74 452 3.07e-24 106
MS.gene45516.t1 MTR_3g072710 24.812 399 250 14 291 657 120 500 3.37e-24 107
MS.gene45516.t1 MTR_5g058860 25.581 387 260 12 291 657 119 497 9.20e-24 105
MS.gene45516.t1 MTR_1g086970 24.745 392 259 15 286 656 101 477 2.55e-23 104
MS.gene45516.t1 MTR_4g095500 23.206 418 266 11 291 659 59 470 1.04e-22 102
MS.gene45516.t1 MTR_5g015950 21.986 423 267 10 291 659 35 448 5.17e-22 99.8
MS.gene45516.t1 MTR_3g053270 21.986 423 267 10 291 659 35 448 5.17e-22 99.8
MS.gene45516.t1 MTR_8g093070 24.257 404 263 16 277 659 117 498 9.32e-19 90.5
MS.gene45516.t1 MTR_0092s0100 24.147 381 247 12 292 656 373 727 6.32e-17 85.5
MS.gene45516.t1 MTR_0092s0100 24.147 381 247 12 292 656 376 730 6.80e-17 85.1
MS.gene45516.t1 MTR_4g026485 23.720 371 252 12 296 656 274 623 3.67e-16 82.8
MS.gene45516.t1 MTR_2g097370 56.897 58 25 0 62 119 1 58 6.42e-13 65.1
MS.gene45516.t1 MTR_8g020840 23.752 501 294 19 205 656 86 547 2.42e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45516.t1 AT2G29060 42.188 640 336 10 50 658 57 693 3.25e-166 493
MS.gene45516.t1 AT2G29060 41.575 635 310 12 50 658 57 656 7.73e-165 488
MS.gene45516.t1 AT1G07530 51.820 467 203 9 211 659 305 767 7.34e-164 489
MS.gene45516.t1 AT1G07520 49.663 445 203 10 229 659 94 531 2.00e-145 433
MS.gene45516.t1 AT1G07520 49.663 445 203 10 229 659 94 531 2.00e-145 433
MS.gene45516.t1 AT2G29065 42.314 631 309 18 50 659 34 630 9.34e-145 435
MS.gene45516.t1 AT1G07520 49.663 445 203 10 229 659 259 696 5.41e-144 435
MS.gene45516.t1 AT1G07520 49.663 445 203 10 229 659 258 695 5.98e-144 435
MS.gene45516.t1 AT2G37650 47.632 380 191 4 283 658 327 702 2.87e-125 387
MS.gene45516.t1 AT2G37650 47.632 380 191 4 283 658 339 714 3.90e-125 387
MS.gene45516.t1 AT5G59450 41.972 436 238 6 238 659 166 600 2.63e-116 361
MS.gene45516.t1 AT3G46600 42.431 436 239 6 229 659 121 549 5.06e-116 358
MS.gene45516.t1 AT3G46600 42.431 436 239 6 229 659 153 581 6.30e-116 359
MS.gene45516.t1 AT3G46600 45.213 376 199 4 288 659 1 373 1.22e-113 346
MS.gene45516.t1 AT5G48150 32.143 392 258 5 270 656 101 489 2.85e-63 218
MS.gene45516.t1 AT5G48150 32.143 392 258 5 270 656 101 489 2.85e-63 218
MS.gene45516.t1 AT5G48150 32.143 392 258 5 270 656 101 489 2.85e-63 218
MS.gene45516.t1 AT5G48150 32.143 392 258 5 270 656 101 489 2.85e-63 218
MS.gene45516.t1 AT2G04890 31.081 370 249 3 287 656 49 412 7.47e-62 212
MS.gene45516.t1 AT1G50600 30.941 404 255 6 271 656 128 525 1.19e-59 209
MS.gene45516.t1 AT1G50600 30.941 404 255 6 271 656 199 596 2.08e-59 210
MS.gene45516.t1 AT1G50600 30.941 404 255 6 271 656 203 600 3.42e-59 209
MS.gene45516.t1 AT1G21450 29.255 376 252 7 289 656 223 592 4.54e-51 187
MS.gene45516.t1 AT1G66350 31.088 386 231 11 281 656 145 505 3.36e-49 180
MS.gene45516.t1 AT3G54220 31.579 399 250 10 267 658 269 651 6.56e-49 182
MS.gene45516.t1 AT4G17230 28.382 377 263 3 286 658 153 526 2.99e-47 175
MS.gene45516.t1 AT4G17230 28.382 377 263 3 286 658 153 526 2.99e-47 175
MS.gene45516.t1 AT2G01570 29.275 386 244 10 281 656 214 580 9.87e-47 174
MS.gene45516.t1 AT1G14920 28.010 382 254 7 281 656 162 528 1.27e-45 170
MS.gene45516.t1 AT3G03450 27.792 385 256 8 281 656 173 544 1.73e-45 170
MS.gene45516.t1 AT5G17490 26.087 368 256 7 292 656 161 515 1.30e-42 162
MS.gene45516.t1 AT1G50420 23.131 428 261 9 291 656 57 478 2.29e-37 146
MS.gene45516.t1 AT5G66770 30.214 374 235 11 295 656 224 583 3.31e-37 147
MS.gene45516.t1 AT1G63100 28.857 350 228 9 291 631 252 589 9.23e-36 143
MS.gene45516.t1 AT1G63100 28.857 350 228 9 291 631 277 614 9.86e-36 143
MS.gene45516.t1 AT4G37650 26.389 360 231 9 290 624 145 495 4.57e-35 140
MS.gene45516.t1 AT5G41920 29.610 385 234 14 286 656 38 399 5.70e-34 134
MS.gene45516.t1 AT3G50650 27.424 361 233 9 311 656 195 541 6.05e-32 131
MS.gene45516.t1 AT3G49950 26.221 389 257 9 291 658 30 409 5.47e-29 120
MS.gene45516.t1 AT5G52510 24.422 389 258 9 289 656 266 639 1.23e-26 115
MS.gene45516.t1 AT1G55580 25.240 416 252 12 288 656 41 444 3.42e-26 112
MS.gene45516.t1 AT4G08250 25.762 361 242 12 310 656 128 476 1.31e-25 111
MS.gene45516.t1 AT3G13840 24.479 384 250 11 291 656 148 509 4.62e-13 72.4

Find 111 sgRNAs with CRISPR-Local

Find 135 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTAATCTGATTTAATATT+TGG 0.081879 2.1:+6580876 None:intergenic
TTCTATTTGGTTCTTCTTGC+TGG 0.149493 2.1:-6579854 MS.gene45516:CDS
TTCACTCTCTCCATTGAATT+TGG 0.151096 2.1:+6580500 None:intergenic
AGTCTTCACATTATAGATTT+TGG 0.160984 2.1:-6580617 MS.gene45516:CDS
AATCTTCTTCCATGAGAAAT+TGG 0.197500 2.1:+6581626 None:intergenic
CAAAGATTGGCACATTTCTT+TGG 0.204755 2.1:-6580824 MS.gene45516:CDS
ATGAGGAAGTTGTGGATTTC+AGG 0.206069 2.1:-6580955 MS.gene45516:CDS
TATCCCTGTGATCTTCAATT+TGG 0.207790 2.1:+6580529 None:intergenic
GAATTCTCTTCAACTGTTCT+TGG 0.222104 2.1:-6581754 MS.gene45516:CDS
TGGGTTTAAGTCTTTGAAAT+TGG 0.243482 2.1:-6579988 MS.gene45516:CDS
TTTATTCATAGCATTGTTAA+TGG 0.246687 2.1:-6580242 MS.gene45516:CDS
GAATCCGAAGGGTGCTGTTT+TGG 0.259645 2.1:-6580294 MS.gene45516:CDS
TGAAATATCATTACAAGAAA+TGG 0.276552 2.1:+6580907 None:intergenic
TTATTTGATAAATTACTTCT+TGG 0.283709 2.1:-6581073 MS.gene45516:CDS
CATATAGGCATTGGCATTCT+AGG 0.286084 2.1:-6580022 MS.gene45516:CDS
CCAAATATTAAATCAGATTA+AGG 0.286177 2.1:-6580876 MS.gene45516:CDS
TAGTTGTATGAGTCTATAAT+TGG 0.294656 2.1:+6581295 None:intergenic
ATTCACTCTTACTTTGTTCA+TGG 0.301028 2.1:+6581773 None:intergenic
TGATGTTTGAGGAAGTGTTT+TGG 0.302555 2.1:-6580106 MS.gene45516:CDS
TGTTTGAGGTGAAGGAAAAT+TGG 0.305166 2.1:-6579902 MS.gene45516:CDS
TGGAAGGGTAGAATTCTATT+TGG 0.313548 2.1:-6579867 MS.gene45516:CDS
GGAGGGAATGGAAGAGTAGT+TGG 0.316336 2.1:+6581250 None:intergenic
CATTCTAGGCACGTGGGAAA+TGG 0.320991 2.1:-6580008 MS.gene45516:CDS
ATCCCTGTGATCTTCAATTT+GGG 0.345121 2.1:+6580530 None:intergenic
AGAGTAGTTGGGAGTAGAAA+AGG 0.358921 2.1:+6581262 None:intergenic
TCCTCAAACATCAACCTATT+AGG 0.361937 2.1:+6580116 None:intergenic
TAGCTTGTGAAGGTTGTGAT+AGG 0.367130 2.1:-6580061 MS.gene45516:CDS
GAGTGAATGAAGCAGGTCTT+AGG 0.373688 2.1:-6580484 MS.gene45516:CDS
TCTATTTGGTTCTTCTTGCT+GGG 0.374895 2.1:-6579853 MS.gene45516:CDS
ATGCTATGAATAAATATATT+CGG 0.399119 2.1:+6580251 None:intergenic
GCAATACAATTGAACTCAAA+AGG 0.401581 2.1:+6580431 None:intergenic
CATTATTGAAAGAAGGGAAA+AGG 0.405322 2.1:+6581197 None:intergenic
GTTGAAGAGCATAGGAATCT+TGG 0.409119 2.1:+6581581 None:intergenic
TTGAGAGGCCAGAGACATAT+AGG 0.413255 2.1:-6580037 MS.gene45516:CDS
AGAAGGGAAAAGGGTTGGAT+TGG 0.418599 2.1:+6581207 None:intergenic
TATAATTGGATCAAGTTCAT+AGG 0.422425 2.1:+6581309 None:intergenic
GTGAACGTGAGGATCCTAAT+AGG 0.434511 2.1:-6580130 MS.gene45516:CDS
AAGGAACATTCTTCTCCAAC+AGG 0.441908 2.1:-6580857 MS.gene45516:CDS
ACTCGATGAGACAGTAGTTT+CGG 0.444774 2.1:-6580318 MS.gene45516:CDS
AGACGAAGAAGAGGAAGAAG+AGG 0.446816 2.1:+6581462 None:intergenic
TTGAAAGAAGGGAAAAGGGT+TGG 0.454471 2.1:+6581202 None:intergenic
CTTTGAGTTCCATCACCTGT+TGG 0.456885 2.1:+6580842 None:intergenic
CTCTTACTTTGTTCATGGTG+TGG 0.459748 2.1:+6581778 None:intergenic
GATAGATCTTCCAAATTCAA+TGG 0.460382 2.1:-6580510 MS.gene45516:CDS
TAGGAGAAAGAGAAGTTATG+AGG 0.463600 2.1:-6580972 MS.gene45516:CDS
ATTCTAGGCACGTGGGAAAT+GGG 0.464304 2.1:-6580007 MS.gene45516:CDS
AGAATAAGAAGACGAAGAAG+AGG 0.467187 2.1:+6581453 None:intergenic
AAACTATAATCACTGAAGCT+AGG 0.467624 2.1:+6581352 None:intergenic
AATGAGCATTATTGAAAGAA+GGG 0.471536 2.1:+6581191 None:intergenic
GAGTAGTTGGGAGTAGAAAA+GGG 0.473309 2.1:+6581263 None:intergenic
GAAGCACGTTTAGCAGGAAC+TGG 0.473702 2.1:-6580791 MS.gene45516:CDS
TCCTAATAGGTTGATGTTTG+AGG 0.474185 2.1:-6580117 MS.gene45516:CDS
GAGGGAATGGAAGAGTAGTT+GGG 0.474502 2.1:+6581251 None:intergenic
GAATGAGCATTATTGAAAGA+AGG 0.478493 2.1:+6581190 None:intergenic
ATTATTGAAAGAAGGGAAAA+GGG 0.478667 2.1:+6581198 None:intergenic
GAGAAGTTATGAGGAAGTTG+TGG 0.483254 2.1:-6580963 MS.gene45516:CDS
TGCCAATGCCTATATGTCTC+TGG 0.483967 2.1:+6580029 None:intergenic
ACTCTTCATGCTCATTGTGT+TGG 0.485254 2.1:+6581674 None:intergenic
GCAGTAGCAGCAGTAGGAGG+AGG 0.489711 2.1:+6581523 None:intergenic
GCAGATTATAGATAAATTGA+AGG 0.495433 2.1:-6579961 MS.gene45516:CDS
GACGAAGAAGAGGAAGAAGA+GGG 0.495930 2.1:+6581463 None:intergenic
GCAGCAGCAGTAGCAGCAGT+AGG 0.498059 2.1:+6581517 None:intergenic
GAAGAATTATCAAACAGATT+CGG 0.502364 2.1:-6581001 MS.gene45516:CDS
CCACCCAAATTGAAGATCAC+AGG 0.507118 2.1:-6580533 MS.gene45516:CDS
AAAATTGGATGCTACAAGGT+TGG 0.509330 2.1:-6579887 MS.gene45516:CDS
AAAATGTGATTAGGAGGGAA+TGG 0.510292 2.1:+6581238 None:intergenic
CTTCAATTTGGGTGGCCCAC+CGG 0.513811 2.1:+6580541 None:intergenic
CATATTGTGAAGGTCTATGC+TGG 0.514011 2.1:+6579828 None:intergenic
GTTGATATAACCAAGAGCAT+TGG 0.514520 2.1:+6581648 None:intergenic
CATTCTTCTCCAACAGGTGA+TGG 0.515669 2.1:-6580851 MS.gene45516:CDS
AACTATAATCACTGAAGCTA+GGG 0.515859 2.1:+6581353 None:intergenic
TCGATGGACAAAAGAGTTGT+TGG 0.516333 2.1:-6581802 MS.gene45516:CDS
GCACTCGAAGCACGTTTAGC+AGG 0.522176 2.1:-6580797 MS.gene45516:CDS
GAAGAGTCATCCAATGCTCT+TGG 0.522768 2.1:-6581658 MS.gene45516:CDS
GGCCAGAGACATATAGGCAT+TGG 0.526736 2.1:-6580031 MS.gene45516:CDS
GGAAGAAGAGGGAAGAGTAG+TGG 0.529525 2.1:+6581474 None:intergenic
TTATATCAACCAATTTCTCA+TGG 0.530130 2.1:-6581635 MS.gene45516:CDS
AAATCCAAAACAGCACCCTT+CGG 0.534191 2.1:+6580290 None:intergenic
CACCGTCTATCGAAAAGATC+CGG 0.539937 2.1:-6580560 MS.gene45516:CDS
CTTGGTACTAAAGTCGCAAA+AGG 0.541250 2.1:-6581055 MS.gene45516:CDS
GGCATGCTGATGAATAAACT+TGG 0.547453 2.1:+6580705 None:intergenic
TTGGATGCTACAAGGTTGGA+AGG 0.548278 2.1:-6579883 MS.gene45516:CDS
TTGGGAAAGTATCAAAGTTG+AGG 0.550259 2.1:-6580402 MS.gene45516:CDS
CAGATTATAGATAAATTGAA+GGG 0.550818 2.1:-6579960 MS.gene45516:CDS
AGCTTGTGAAGGTTGTGATA+GGG 0.552272 2.1:-6580060 MS.gene45516:CDS
ATGGAGAGAGTGAATGAAGC+AGG 0.553640 2.1:-6580491 MS.gene45516:CDS
TTATAGATAAATTGAAGGGT+AGG 0.554979 2.1:-6579956 MS.gene45516:CDS
AGGTGATGGAACTCAAAGAT+TGG 0.559955 2.1:-6580837 MS.gene45516:CDS
CCTGTGATCTTCAATTTGGG+TGG 0.565831 2.1:+6580533 None:intergenic
GATAGACGGTGTATAAAAGC+AGG 0.571505 2.1:+6580572 None:intergenic
GCAGCAGTAGCAGCAGTAGG+AGG 0.573244 2.1:+6581520 None:intergenic
GAATTATCAAACAGATTCGG+TGG 0.598197 2.1:-6580998 MS.gene45516:CDS
CACCCAAATTGAAGATCACA+GGG 0.598988 2.1:-6580532 MS.gene45516:CDS
CTCAGTAAGTTGAAGAGCAT+AGG 0.600415 2.1:+6581573 None:intergenic
CAGTAGCAGCAGTAGGAGGA+GGG 0.605945 2.1:+6581524 None:intergenic
AAGGAAAATTGGATGCTACA+AGG 0.606455 2.1:-6579891 MS.gene45516:CDS
CAATAATGCTCATTCTCACG+AGG 0.607715 2.1:-6581182 MS.gene45516:CDS
GTGTTGGTTATGGTTTCAAG+TGG 0.612035 2.1:-6580595 MS.gene45516:CDS
AGTAGTTTCGGAGAATCCGA+AGG 0.616125 2.1:-6580306 MS.gene45516:CDS
ATTCATAGCATTGTTAATGG+CGG 0.619293 2.1:-6580239 MS.gene45516:CDS
CGTCTATCGAAAAGATCCGG+TGG 0.631429 2.1:-6580557 MS.gene45516:CDS
GTCTATCGAAAAGATCCGGT+GGG 0.632717 2.1:-6580556 MS.gene45516:CDS
ATGAATGTTATAGCTTGTGA+AGG 0.633082 2.1:-6580071 MS.gene45516:CDS
AGTGATTATAGTTTCAGCAG+TGG 0.635543 2.1:-6581343 MS.gene45516:CDS
AGAAGAGGGAAGAGTAGTGG+CGG 0.638209 2.1:+6581477 None:intergenic
TGGATGCTACAAGGTTGGAA+GGG 0.641743 2.1:-6579882 MS.gene45516:CDS
GCATTGGCATTCTAGGCACG+TGG 0.643333 2.1:-6580015 MS.gene45516:CDS
TAACAACAATAGTGAACGTG+AGG 0.667397 2.1:-6580141 MS.gene45516:CDS
CATTGGCATTCTAGGCACGT+GGG 0.682240 2.1:-6580014 MS.gene45516:CDS
AAGGTTGTGATAGGGTTGAG+AGG 0.698263 2.1:-6580052 MS.gene45516:CDS
GTAGTTTCGGAGAATCCGAA+GGG 0.706195 2.1:-6580305 MS.gene45516:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGCTATGAATAAATATATT+CGG + chr2.1:6581393-6581412 None:intergenic 15.0%
!! TTATTTGATAAATTACTTCT+TGG - chr2.1:6580568-6580587 MS.gene45516:CDS 15.0%
!!! TTTTATAAACAAATTTCTCA+TGG - chr2.1:6579910-6579929 MS.gene45516:CDS 15.0%
!! CAATTGTATTGCAAAAAATT+GGG - chr2.1:6581221-6581240 MS.gene45516:CDS 20.0%
!! CAGATTATAGATAAATTGAA+GGG - chr2.1:6581681-6581700 MS.gene45516:CDS 20.0%
!! CCAAATATTAAATCAGATTA+AGG - chr2.1:6580765-6580784 MS.gene45516:CDS 20.0%
!! CCTTAATCTGATTTAATATT+TGG + chr2.1:6580768-6580787 None:intergenic 20.0%
!! TCAATTGTATTGCAAAAAAT+TGG - chr2.1:6581220-6581239 MS.gene45516:CDS 20.0%
!! TGAAATATCATTACAAGAAA+TGG + chr2.1:6580737-6580756 None:intergenic 20.0%
!! TTTATTCATAGCATTGTTAA+TGG - chr2.1:6581399-6581418 MS.gene45516:CDS 20.0%
! AATGAGCATTATTGAAAGAA+GGG + chr2.1:6580453-6580472 None:intergenic 25.0%
! ATTATTGAAAGAAGGGAAAA+GGG + chr2.1:6580446-6580465 None:intergenic 25.0%
! GAAGAATTATCAAACAGATT+CGG - chr2.1:6580640-6580659 MS.gene45516:CDS 25.0%
! GATTGAGAAAAAATGTGATT+AGG + chr2.1:6580415-6580434 None:intergenic 25.0%
! GCAGATTATAGATAAATTGA+AGG - chr2.1:6581680-6581699 MS.gene45516:CDS 25.0%
! TAGTTGTATGAGTCTATAAT+TGG + chr2.1:6580349-6580368 None:intergenic 25.0%
! TATAATTGGATCAAGTTCAT+AGG + chr2.1:6580335-6580354 None:intergenic 25.0%
! TTATAGATAAATTGAAGGGT+AGG - chr2.1:6581685-6581704 MS.gene45516:CDS 25.0%
! TTATATCAACCAATTTCTCA+TGG - chr2.1:6580006-6580025 MS.gene45516:CDS 25.0%
!! AGTCTTCACATTATAGATTT+TGG - chr2.1:6581024-6581043 MS.gene45516:CDS 25.0%
!! ATAATTGCAAGCTTTTCAAA+AGG + chr2.1:6580961-6580980 None:intergenic 25.0%
!! TAATTGCAAGCTTTTCAAAA+GGG + chr2.1:6580960-6580979 None:intergenic 25.0%
!!! AAGTTGAGGATTTTAAGATA+AGG - chr2.1:6581253-6581272 MS.gene45516:CDS 25.0%
AAACTATAATCACTGAAGCT+AGG + chr2.1:6580292-6580311 None:intergenic 30.0%
AACTATAATCACTGAAGCTA+GGG + chr2.1:6580291-6580310 None:intergenic 30.0%
AATCTTCTTCCATGAGAAAT+TGG + chr2.1:6580018-6580037 None:intergenic 30.0%
ATTCACTCTTACTTTGTTCA+TGG + chr2.1:6579871-6579890 None:intergenic 30.0%
ATTCATAGCATTGTTAATGG+CGG - chr2.1:6581402-6581421 MS.gene45516:CDS 30.0%
CATTATTGAAAGAAGGGAAA+AGG + chr2.1:6580447-6580466 None:intergenic 30.0%
GAATGAGCATTATTGAAAGA+AGG + chr2.1:6580454-6580473 None:intergenic 30.0%
GAGAAAAAATGTGATTAGGA+GGG + chr2.1:6580411-6580430 None:intergenic 30.0%
GATAGATCTTCCAAATTCAA+TGG - chr2.1:6581131-6581150 MS.gene45516:CDS 30.0%
GCAATACAATTGAACTCAAA+AGG + chr2.1:6581213-6581232 None:intergenic 30.0%
TGAGAAAAAATGTGATTAGG+AGG + chr2.1:6580412-6580431 None:intergenic 30.0%
TTAAACCTCGTCACAAAAAA+AGG + chr2.1:6581438-6581457 None:intergenic 30.0%
! ATGAATGTTATAGCTTGTGA+AGG - chr2.1:6581570-6581589 MS.gene45516:CDS 30.0%
! TAACAGTGATTTTCTGTTTG+AGG - chr2.1:6581725-6581744 MS.gene45516:CDS 30.0%
!! CACATTATAGATTTTGGTGT+TGG - chr2.1:6581030-6581049 MS.gene45516:CDS 30.0%
!! TGGGTTTAAGTCTTTGAAAT+TGG - chr2.1:6581653-6581672 MS.gene45516:CDS 30.0%
!!! ATAGATTTTGGTGTTGGTTA+TGG - chr2.1:6581036-6581055 MS.gene45516:CDS 30.0%
!!! TTTTTTTGTGACGAGGTTTA+AGG - chr2.1:6581437-6581456 MS.gene45516:CDS 30.0%
AAAATGTGATTAGGAGGGAA+TGG + chr2.1:6580406-6580425 None:intergenic 35.0%
AAAATTGGATGCTACAAGGT+TGG - chr2.1:6581754-6581773 MS.gene45516:CDS 35.0%
AAGGAAAATTGGATGCTACA+AGG - chr2.1:6581750-6581769 MS.gene45516:CDS 35.0%
AGAATAAGAAGACGAAGAAG+AGG + chr2.1:6580191-6580210 None:intergenic 35.0%
AGTGATTATAGTTTCAGCAG+TGG - chr2.1:6580298-6580317 MS.gene45516:CDS 35.0%
ATCCCTGTGATCTTCAATTT+GGG + chr2.1:6581114-6581133 None:intergenic 35.0%
CAAAGATTGGCACATTTCTT+TGG - chr2.1:6580817-6580836 MS.gene45516:CDS 35.0%
GAAAAAATCTGCTGCAGATA+TGG - chr2.1:6580903-6580922 MS.gene45516:CDS 35.0%
GAATTATCAAACAGATTCGG+TGG - chr2.1:6580643-6580662 MS.gene45516:CDS 35.0%
GAATTCTCTTCAACTGTTCT+TGG - chr2.1:6579887-6579906 MS.gene45516:CDS 35.0%
TAACAACAATAGTGAACGTG+AGG - chr2.1:6581500-6581519 MS.gene45516:CDS 35.0%
TAGGAGAAAGAGAAGTTATG+AGG - chr2.1:6580669-6580688 MS.gene45516:CDS 35.0%
TATCCCTGTGATCTTCAATT+TGG + chr2.1:6581115-6581134 None:intergenic 35.0%
TCCTCAAACATCAACCTATT+AGG + chr2.1:6581528-6581547 None:intergenic 35.0%
TGGAAGGGTAGAATTCTATT+TGG - chr2.1:6581774-6581793 MS.gene45516:CDS 35.0%
TTCACTCTCTCCATTGAATT+TGG + chr2.1:6581144-6581163 None:intergenic 35.0%
! GTTGATATAACCAAGAGCAT+TGG + chr2.1:6579996-6580015 None:intergenic 35.0%
! TGTTTGAGGTGAAGGAAAAT+TGG - chr2.1:6581739-6581758 MS.gene45516:CDS 35.0%
!! TCCTAATAGGTTGATGTTTG+AGG - chr2.1:6581524-6581543 MS.gene45516:CDS 35.0%
!! TCTATTTGGTTCTTCTTGCT+GGG - chr2.1:6581788-6581807 MS.gene45516:CDS 35.0%
!! TGATTTTCTGTTTGAGGTGA+AGG - chr2.1:6581731-6581750 MS.gene45516:CDS 35.0%
!! TTCTATTTGGTTCTTCTTGC+TGG - chr2.1:6581787-6581806 MS.gene45516:CDS 35.0%
!! TTGGGAAAGTATCAAAGTTG+AGG - chr2.1:6581239-6581258 MS.gene45516:CDS 35.0%
!!! ATCTGCAGCAGATTTTTTCT+TGG + chr2.1:6580902-6580921 None:intergenic 35.0%
!!! ATGTTTGAGGAAGTGTTTTG+GGG - chr2.1:6581537-6581556 MS.gene45516:CDS 35.0%
!!! GATGTTTGAGGAAGTGTTTT+GGG - chr2.1:6581536-6581555 MS.gene45516:CDS 35.0%
!!! TGAAAGCTTGTGTTTTGAAG+TGG + chr2.1:6580613-6580632 None:intergenic 35.0%
!!! TGATGTTTGAGGAAGTGTTT+TGG - chr2.1:6581535-6581554 MS.gene45516:CDS 35.0%
AAATCCAAAACAGCACCCTT+CGG + chr2.1:6581354-6581373 None:intergenic 40.0%
AAGGAACATTCTTCTCCAAC+AGG - chr2.1:6580784-6580803 MS.gene45516:CDS 40.0%
ACTCGATGAGACAGTAGTTT+CGG - chr2.1:6581323-6581342 MS.gene45516:CDS 40.0%
ACTCTTCATGCTCATTGTGT+TGG + chr2.1:6579970-6579989 None:intergenic 40.0%
AGAGTAGTTGGGAGTAGAAA+AGG + chr2.1:6580382-6580401 None:intergenic 40.0%
AGCTTGTGAAGGTTGTGATA+GGG - chr2.1:6581581-6581600 MS.gene45516:CDS 40.0%
ATGAGGAAGTTGTGGATTTC+AGG - chr2.1:6580686-6580705 MS.gene45516:CDS 40.0%
CAATAATGCTCATTCTCACG+AGG - chr2.1:6580459-6580478 MS.gene45516:CDS 40.0%
CACCCAAATTGAAGATCACA+GGG - chr2.1:6581109-6581128 MS.gene45516:CDS 40.0%
CTCTTACTTTGTTCATGGTG+TGG + chr2.1:6579866-6579885 None:intergenic 40.0%
CTTGGTACTAAAGTCGCAAA+AGG - chr2.1:6580586-6580605 MS.gene45516:CDS 40.0%
GAGAAGTTATGAGGAAGTTG+TGG - chr2.1:6580678-6580697 MS.gene45516:CDS 40.0%
GAGTAGTTGGGAGTAGAAAA+GGG + chr2.1:6580381-6580400 None:intergenic 40.0%
GATAGACGGTGTATAAAAGC+AGG + chr2.1:6581072-6581091 None:intergenic 40.0%
GGCATGCTGATGAATAAACT+TGG + chr2.1:6580939-6580958 None:intergenic 40.0%
TTGAAAGAAGGGAAAAGGGT+TGG + chr2.1:6580442-6580461 None:intergenic 40.0%
! CTCAGTAAGTTGAAGAGCAT+AGG + chr2.1:6580071-6580090 None:intergenic 40.0%
! GTTGAAGAGCATAGGAATCT+TGG + chr2.1:6580063-6580082 None:intergenic 40.0%
! TAGCTTGTGAAGGTTGTGAT+AGG - chr2.1:6581580-6581599 MS.gene45516:CDS 40.0%
!! AGGTGATGGAACTCAAAGAT+TGG - chr2.1:6580804-6580823 MS.gene45516:CDS 40.0%
!! AGTTGTAGTTTTGCTGATGC+TGG + chr2.1:6580258-6580277 None:intergenic 40.0%
!! CATATAGGCATTGGCATTCT+AGG - chr2.1:6581619-6581638 MS.gene45516:CDS 40.0%
!! GTGTTGGTTATGGTTTCAAG+TGG - chr2.1:6581046-6581065 MS.gene45516:CDS 40.0%
!!! ATGCACCTTTTTTTGTGACG+AGG - chr2.1:6581430-6581449 MS.gene45516:CDS 40.0%
!!! CAAACAGATTCGGTGGTTTT+AGG - chr2.1:6580650-6580669 MS.gene45516:CDS 40.0%
!!! TGTTTGAGGAAGTGTTTTGG+GGG - chr2.1:6581538-6581557 MS.gene45516:CDS 40.0%
AAGGTTGTGATAGGGTTGAG+AGG - chr2.1:6581589-6581608 MS.gene45516:CDS 45.0%
AGAAGGGAAAAGGGTTGGAT+TGG + chr2.1:6580437-6580456 None:intergenic 45.0%
AGACGAAGAAGAGGAAGAAG+AGG + chr2.1:6580182-6580201 None:intergenic 45.0%
AGTAGTTTCGGAGAATCCGA+AGG - chr2.1:6581335-6581354 MS.gene45516:CDS 45.0%
ATGGAGAGAGTGAATGAAGC+AGG - chr2.1:6581150-6581169 MS.gene45516:CDS 45.0%
ATTCTAGGCACGTGGGAAAT+GGG - chr2.1:6581634-6581653 MS.gene45516:CDS 45.0%
CACCGTCTATCGAAAAGATC+CGG - chr2.1:6581081-6581100 MS.gene45516:CDS 45.0%
CATTCTTCTCCAACAGGTGA+TGG - chr2.1:6580790-6580809 MS.gene45516:CDS 45.0%
CCACCCAAATTGAAGATCAC+AGG - chr2.1:6581108-6581127 MS.gene45516:CDS 45.0%
CCTGTGATCTTCAATTTGGG+TGG + chr2.1:6581111-6581130 None:intergenic 45.0%
GAAGAGTCATCCAATGCTCT+TGG - chr2.1:6579983-6580002 MS.gene45516:CDS 45.0%
GACGAAGAAGAGGAAGAAGA+GGG + chr2.1:6580181-6580200 None:intergenic 45.0%
GAGGGAATGGAAGAGTAGTT+GGG + chr2.1:6580393-6580412 None:intergenic 45.0%
GAGTGAATGAAGCAGGTCTT+AGG - chr2.1:6581157-6581176 MS.gene45516:CDS 45.0%
GTAGTTTCGGAGAATCCGAA+GGG - chr2.1:6581336-6581355 MS.gene45516:CDS 45.0%
GTCTATCGAAAAGATCCGGT+GGG - chr2.1:6581085-6581104 MS.gene45516:CDS 45.0%
GTGAACGTGAGGATCCTAAT+AGG - chr2.1:6581511-6581530 MS.gene45516:CDS 45.0%
TGCCAATGCCTATATGTCTC+TGG + chr2.1:6581615-6581634 None:intergenic 45.0%
TGGATGCTACAAGGTTGGAA+GGG - chr2.1:6581759-6581778 MS.gene45516:CDS 45.0%
TTGAGAGGCCAGAGACATAT+AGG - chr2.1:6581604-6581623 MS.gene45516:CDS 45.0%
TTGGATGCTACAAGGTTGGA+AGG - chr2.1:6581758-6581777 MS.gene45516:CDS 45.0%
! CACCGGATCTTTTCGATAGA+CGG + chr2.1:6581086-6581105 None:intergenic 45.0%
! CTTTGAGTTCCATCACCTGT+TGG + chr2.1:6580802-6580821 None:intergenic 45.0%
!! GTAGTTTTGCTGATGCTGGA+TGG + chr2.1:6580254-6580273 None:intergenic 45.0%
AGAAGAGGGAAGAGTAGTGG+CGG + chr2.1:6580167-6580186 None:intergenic 50.0%
CATTCTAGGCACGTGGGAAA+TGG - chr2.1:6581633-6581652 MS.gene45516:CDS 50.0%
CATTGGCATTCTAGGCACGT+GGG - chr2.1:6581627-6581646 MS.gene45516:CDS 50.0%
CGTCTATCGAAAAGATCCGG+TGG - chr2.1:6581084-6581103 MS.gene45516:CDS 50.0%
GAAGCACGTTTAGCAGGAAC+TGG - chr2.1:6580850-6580869 MS.gene45516:CDS 50.0%
GGAAGAAGAGGGAAGAGTAG+TGG + chr2.1:6580170-6580189 None:intergenic 50.0%
GGAGGGAATGGAAGAGTAGT+TGG + chr2.1:6580394-6580413 None:intergenic 50.0%
GGCCAGAGACATATAGGCAT+TGG - chr2.1:6581610-6581629 MS.gene45516:CDS 50.0%
!!! GAATCCGAAGGGTGCTGTTT+TGG - chr2.1:6581347-6581366 MS.gene45516:CDS 50.0%
CAGTAGCAGCAGTAGGAGGA+GGG + chr2.1:6580120-6580139 None:intergenic 55.0%
CTTCAATTTGGGTGGCCCAC+CGG + chr2.1:6581103-6581122 None:intergenic 55.0%
GCACTCGAAGCACGTTTAGC+AGG - chr2.1:6580844-6580863 MS.gene45516:CDS 55.0%
! GCATTGGCATTCTAGGCACG+TGG - chr2.1:6581626-6581645 MS.gene45516:CDS 55.0%
GCAGCAGCAGTAGCAGCAGT+AGG + chr2.1:6580127-6580146 None:intergenic 60.0%
GCAGCAGTAGCAGCAGTAGG+AGG + chr2.1:6580124-6580143 None:intergenic 60.0%
GCAGTAGCAGCAGTAGGAGG+AGG + chr2.1:6580121-6580140 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 6579842 6581821 6579842 ID=MS.gene45516
chr2.1 mRNA 6579842 6581821 6579842 ID=MS.gene45516.t1;Parent=MS.gene45516
chr2.1 exon 6579842 6581821 6579842 ID=MS.gene45516.t1.exon1;Parent=MS.gene45516.t1
chr2.1 CDS 6579842 6581821 6579842 ID=cds.MS.gene45516.t1;Parent=MS.gene45516.t1
Gene Sequence

>MS.gene45516

ATGGACAAAAGAGTTGTTGGTCCACACCATGAACAAAGTAAGAGTGAATTCTCTTCAACTGTTCTTGGTTTTATAAACAAATTTCTCATGGAAGATGATGACATAGAAGAAGACTACAATATGTTCCAACACAATGAGCATGAAGAGTCATCCAATGCTCTTGGTTATATCAACCAATTTCTCATGGAAGAAGATTTTGAAAAAGAATACACTATGTTCCAAGATTCCTATGCTCTTCAACTTACTGAGAAATCATTTCATGATGTTATTTCTCACCCTCCTCCTACTGCTGCTACTGCTGCTGCTGCTGCTGCTGCTGCTGCCGCCACTACTCTTCCCTCTTCTTCCTCTTCTTCGTCTTCTTATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCATCCAGCATCAGCAAAACTACAACTATGTGCATAGCCCTAGCTTCAGTGATTATAGTTTCAGCAGTGGTAGCACTAGCTCCTATGAACTTGATCCAATTATAGACTCATACAACTATAATAACAACCCTTTTCTACTCCCAACTACTCTTCCATTCCCTCCTAATCACATTTTTTCTCAATCCAATCCAACCCTTTTCCCTTCTTTCAATAATGCTCATTCTCACGAGGTAATTAAGACAGAAAACTTTGAAGAAGAGCATTTTCTTAATGTGTCAAAACAAGTGAATGTAGATGATAACAGTGAGTTATCAGAATTATTTGATAAATTACTTCTTGGTACTAAAGTCGCAAAAGGTCCACTTCAAAACACAAGCTTTCAGCAGAATGAAGAATTATCAAACAGATTCGGTGGTTTTAGGAGAAAGAGAAGTTATGAGGAAGTTGTGGATTTCAGGACACTATTGATGCTATGTGCACAATCCATTTCTTGTAATGATATTTCAAATGCTAACCAAATATTAAATCAGATTAAGGAACATTCTTCTCCAACAGGTGATGGAACTCAAAGATTGGCACATTTCTTTGGAAATGCACTCGAAGCACGTTTAGCAGGAACTGGTTCACTTATTTATAGAGCTCTATCTTCCAAGAAAAAATCTGCTGCAGATATGGCAAGAGCTTACCAAGTTTATTCATCAGCATGCCCTTTTGAAAAGCTTGCAATTATGTTCTCAAACAATGCAATTTTCAATGTAGCAAAAGAAACAGAAAGTCTTCACATTATAGATTTTGGTGTTGGTTATGGTTTCAAGTGGCCTGCTTTTATACACCGTCTATCGAAAAGATCCGGTGGGCCACCCAAATTGAAGATCACAGGGATAGATCTTCCAAATTCAATGGAGAGAGTGAATGAAGCAGGTCTTAGGCTTGCAAGTTATTGCAAACGTTTCAATGTTCCTTTTGAGTTCAATTGTATTGCAAAAAATTGGGAAAGTATCAAAGTTGAGGATTTTAAGATAAGGAAAAATGAGTTTGTTGCTGTGAATTGTTTGTTTAAGTTTGAGAATCTACTCGATGAGACAGTAGTTTCGGAGAATCCGAAGGGTGCTGTTTTGGATTTGATTAGAAAGACAAATCCGAATATATTTATTCATAGCATTGTTAATGGCGGTTATGATGCACCTTTTTTTGTGACGAGGTTTAAGGAAGCTGTTTTTCATTATTCAGCATTGTTTGATACGCTTGATAACAACAATAGTGAACGTGAGGATCCTAATAGGTTGATGTTTGAGGAAGTGTTTTGGGGGAAAGATATAATGAATGTTATAGCTTGTGAAGGTTGTGATAGGGTTGAGAGGCCAGAGACATATAGGCATTGGCATTCTAGGCACGTGGGAAATGGGTTTAAGTCTTTGAAATTGGATAAGCAGATTATAGATAAATTGAAGGGTAGGTTGAGAGATGATGCATATAACAGTGATTTTCTGTTTGAGGTGAAGGAAAATTGGATGCTACAAGGTTGGAAGGGTAGAATTCTATTTGGTTCTTCTTGCTGGGTTCCAGCATAG
Protein sequence

>MS.gene45516.t1

MDKRVVGPHHEQSKSEFSSTVLGFINKFLMEDDDIEEDYNMFQHNEHEESSNALGYINQFLMEEDFEKEYTMFQDSYALQLTEKSFHDVISHPPPTAATAAAAAAAAAATTLPSSSSSSSSYSSSSSSSSSSSSSSSIQHQQNYNYVHSPSFSDYSFSSGSTSSYELDPIIDSYNYNNNPFLLPTTLPFPPNHIFSQSNPTLFPSFNNAHSHEVIKTENFEEEHFLNVSKQVNVDDNSELSELFDKLLLGTKVAKGPLQNTSFQQNEELSNRFGGFRRKRSYEEVVDFRTLLMLCAQSISCNDISNANQILNQIKEHSSPTGDGTQRLAHFFGNALEARLAGTGSLIYRALSSKKKSAADMARAYQVYSSACPFEKLAIMFSNNAIFNVAKETESLHIIDFGVGYGFKWPAFIHRLSKRSGGPPKLKITGIDLPNSMERVNEAGLRLASYCKRFNVPFEFNCIAKNWESIKVEDFKIRKNEFVAVNCLFKFENLLDETVVSENPKGAVLDLIRKTNPNIFIHSIVNGGYDAPFFVTRFKEAVFHYSALFDTLDNNNSEREDPNRLMFEEVFWGKDIMNVIACEGCDRVERPETYRHWHSRHVGNGFKSLKLDKQIIDKLKGRLRDDAYNSDFLFEVKENWMLQGWKGRILFGSSCWVPA