AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene45517

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45517.t1 MTR_2g097350 90.654 642 58 1 1 640 1 642 0.0 1160
MS.gene45517.t1 MTR_2g097390 83.051 649 95 4 1 640 1 643 0.0 1065
MS.gene45517.t1 MTR_2g097310 82.796 651 90 7 1 640 1 640 0.0 1055
MS.gene45517.t1 MTR_2g097380 75.556 495 70 5 153 640 113 563 0.0 756
MS.gene45517.t1 MTR_4g064160 61.036 444 160 6 207 640 246 686 0.0 561
MS.gene45517.t1 MTR_4g064120 41.467 627 309 15 46 640 28 628 6.46e-155 460
MS.gene45517.t1 MTR_2g097410 51.678 447 198 9 207 640 302 743 4.77e-154 462
MS.gene45517.t1 MTR_7g062120 52.455 387 178 3 258 640 358 742 3.15e-152 457
MS.gene45517.t1 MTR_4g064150 41.463 656 316 17 46 640 87 735 4.04e-152 457
MS.gene45517.t1 MTR_4g064180 40.635 630 310 15 46 640 28 628 1.80e-150 449
MS.gene45517.t1 MTR_2g097467 38.694 628 326 15 50 640 51 656 2.50e-145 437
MS.gene45517.t1 MTR_4g064200 47.072 461 217 7 200 640 199 652 2.77e-143 431
MS.gene45517.t1 MTR_2g097463 38.907 622 326 14 54 640 55 657 1.16e-142 430
MS.gene45517.t1 MTR_2g097473 38.994 636 313 15 50 640 51 656 1.20e-142 430
MS.gene45517.t1 MTR_3g056110 29.144 549 329 16 121 637 21 541 7.40e-64 220
MS.gene45517.t1 MTR_5g097480 32.267 375 245 4 268 637 173 543 9.46e-63 217
MS.gene45517.t1 MTR_3g089055 33.957 374 236 6 270 637 201 569 1.36e-61 215
MS.gene45517.t1 MTR_3g089055 33.957 374 236 6 270 637 196 564 1.43e-61 214
MS.gene45517.t1 MTR_2g026250 32.637 383 247 5 263 637 216 595 2.85e-61 214
MS.gene45517.t1 MTR_4g133660 31.300 377 251 4 267 638 170 543 3.26e-60 211
MS.gene45517.t1 MTR_2g082090 32.000 375 246 4 268 637 208 578 6.24e-59 208
MS.gene45517.t1 MTR_1g029420 32.527 372 244 3 270 637 223 591 1.04e-58 207
MS.gene45517.t1 MTR_5g094450 31.496 381 244 9 268 637 157 531 1.32e-56 200
MS.gene45517.t1 MTR_7g027190 30.867 392 236 7 267 637 295 672 3.44e-55 199
MS.gene45517.t1 MTR_4g104020 29.058 382 250 8 269 637 146 519 9.40e-49 179
MS.gene45517.t1 MTR_8g442410 30.412 388 240 10 267 637 150 524 2.53e-48 177
MS.gene45517.t1 MTR_7g074650 32.055 365 234 8 276 639 442 793 3.33e-48 181
MS.gene45517.t1 MTR_3g065980 31.122 392 240 8 262 637 162 539 9.98e-48 176
MS.gene45517.t1 MTR_5g009080 26.818 440 258 8 258 637 42 477 4.41e-42 159
MS.gene45517.t1 MTR_3g022830 27.208 419 242 9 273 637 26 435 5.41e-40 152
MS.gene45517.t1 MTR_4g097080 26.509 381 262 8 270 639 131 504 2.19e-39 152
MS.gene45517.t1 MTR_4g102790 25.648 386 263 9 268 639 288 663 3.97e-39 153
MS.gene45517.t1 MTR_4g076140 26.087 437 258 9 261 637 37 468 6.56e-39 150
MS.gene45517.t1 MTR_4g077760 29.474 380 241 10 269 637 191 554 3.35e-37 146
MS.gene45517.t1 MTR_2g089100 28.537 410 242 10 269 640 49 445 5.00e-36 141
MS.gene45517.t1 MTR_2g034260 25.385 390 267 8 264 637 202 583 2.53e-35 141
MS.gene45517.t1 MTR_5g015490 26.562 384 260 10 272 639 114 491 1.46e-33 135
MS.gene45517.t1 MTR_2g034250 26.410 390 264 8 264 637 202 584 3.53e-33 135
MS.gene45517.t1 MTR_4g076020 27.346 373 234 10 276 640 88 431 1.83e-31 127
MS.gene45517.t1 MTR_2g034280 25.130 386 271 7 264 637 195 574 2.97e-31 129
MS.gene45517.t1 MTR_7g057230 28.571 287 194 5 357 637 375 656 6.65e-31 129
MS.gene45517.t1 MTR_1g069725 28.084 381 248 14 264 637 101 462 1.02e-30 126
MS.gene45517.t1 MTR_6g047750 28.696 345 218 10 307 637 331 661 1.25e-29 124
MS.gene45517.t1 MTR_1g096030 27.157 394 244 14 272 637 80 458 4.90e-29 121
MS.gene45517.t1 MTR_7g109580 26.178 382 259 10 267 637 184 553 1.79e-27 117
MS.gene45517.t1 MTR_2g099110 28.462 390 246 11 272 639 74 452 6.60e-26 111
MS.gene45517.t1 MTR_5g058860 27.296 392 245 16 272 637 119 496 2.93e-25 110
MS.gene45517.t1 MTR_3g072710 26.368 402 248 14 267 637 115 499 6.40e-24 106
MS.gene45517.t1 MTR_4g095500 22.877 424 266 10 269 640 56 470 1.59e-22 101
MS.gene45517.t1 MTR_1g086970 25.191 393 256 15 267 637 101 477 3.38e-22 100
MS.gene45517.t1 MTR_5g015950 22.118 425 270 11 269 640 32 448 1.17e-21 98.6
MS.gene45517.t1 MTR_3g053270 22.118 425 270 11 269 640 32 448 1.17e-21 98.6
MS.gene45517.t1 MTR_8g093070 24.304 395 272 13 255 640 122 498 8.02e-20 93.6
MS.gene45517.t1 MTR_0092s0100 23.885 381 248 14 273 637 376 730 2.57e-15 80.1
MS.gene45517.t1 MTR_0092s0100 23.885 381 248 14 273 637 373 727 2.97e-15 79.7
MS.gene45517.t1 MTR_4g026485 23.138 376 256 13 273 637 270 623 1.06e-14 77.8
MS.gene45517.t1 MTR_2g097370 93.750 32 2 0 62 93 1 32 2.40e-14 68.9
MS.gene45517.t1 MTR_8g020840 24.121 398 249 13 272 637 171 547 1.04e-11 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45517.t1 AT2G29060 43.699 611 312 11 50 639 57 656 1.35e-171 504
MS.gene45517.t1 AT2G29060 42.723 639 315 11 50 639 57 693 2.03e-170 503
MS.gene45517.t1 AT1G07530 51.627 461 203 7 197 640 310 767 2.80e-166 494
MS.gene45517.t1 AT1G07520 48.322 447 215 8 205 640 90 531 8.64e-146 434
MS.gene45517.t1 AT1G07520 48.322 447 215 8 205 640 90 531 8.64e-146 434
MS.gene45517.t1 AT2G29065 41.234 616 318 15 50 640 34 630 9.66e-145 434
MS.gene45517.t1 AT1G07520 48.322 447 215 8 205 640 255 696 2.63e-144 436
MS.gene45517.t1 AT1G07520 48.322 447 215 8 205 640 254 695 3.14e-144 435
MS.gene45517.t1 AT2G37650 50.260 384 183 4 260 639 323 702 6.97e-133 406
MS.gene45517.t1 AT2G37650 50.260 384 183 4 260 639 335 714 7.30e-133 407
MS.gene45517.t1 AT5G59450 37.313 603 308 12 49 640 57 600 2.57e-124 381
MS.gene45517.t1 AT3G46600 43.897 426 228 6 219 640 131 549 1.27e-119 367
MS.gene45517.t1 AT3G46600 43.897 426 228 6 219 640 163 581 2.50e-119 367
MS.gene45517.t1 AT3G46600 46.011 376 196 4 269 640 1 373 2.59e-115 350
MS.gene45517.t1 AT1G50600 33.835 399 250 6 245 637 135 525 1.98e-65 224
MS.gene45517.t1 AT1G50600 33.835 399 250 6 245 637 210 600 5.52e-65 225
MS.gene45517.t1 AT1G50600 33.835 399 250 6 245 637 206 596 5.65e-65 225
MS.gene45517.t1 AT5G48150 33.418 392 253 5 251 637 101 489 6.31e-65 222
MS.gene45517.t1 AT5G48150 33.418 392 253 5 251 637 101 489 6.31e-65 222
MS.gene45517.t1 AT5G48150 33.418 392 253 5 251 637 101 489 6.31e-65 222
MS.gene45517.t1 AT5G48150 33.418 392 253 5 251 637 101 489 6.31e-65 222
MS.gene45517.t1 AT2G04890 32.345 371 243 5 268 637 49 412 5.63e-63 214
MS.gene45517.t1 AT1G21450 28.625 538 330 14 128 637 81 592 2.54e-57 204
MS.gene45517.t1 AT4G17230 31.481 378 250 6 267 639 153 526 8.95e-53 190
MS.gene45517.t1 AT4G17230 31.481 378 250 6 267 639 153 526 8.95e-53 190
MS.gene45517.t1 AT3G54220 33.333 396 247 9 248 639 269 651 4.89e-52 190
MS.gene45517.t1 AT1G66350 30.871 379 241 8 262 637 145 505 2.01e-47 174
MS.gene45517.t1 AT3G03450 29.534 386 248 9 262 637 173 544 2.78e-47 175
MS.gene45517.t1 AT2G01570 29.948 384 244 8 262 637 214 580 3.07e-45 170
MS.gene45517.t1 AT5G17490 28.117 377 255 7 264 637 152 515 3.12e-44 166
MS.gene45517.t1 AT1G14920 28.796 382 251 7 262 637 162 528 1.42e-43 164
MS.gene45517.t1 AT5G66770 31.081 370 237 9 276 637 224 583 3.57e-40 155
MS.gene45517.t1 AT1G50420 24.161 447 275 8 251 637 36 478 1.62e-37 146
MS.gene45517.t1 AT4G37650 26.331 357 235 8 271 605 145 495 5.03e-34 137
MS.gene45517.t1 AT3G50650 27.451 357 238 7 292 637 195 541 5.24e-33 134
MS.gene45517.t1 AT5G41920 29.474 380 243 12 266 637 37 399 8.72e-33 131
MS.gene45517.t1 AT1G63100 27.027 370 247 8 260 620 269 624 6.05e-32 132
MS.gene45517.t1 AT1G63100 27.027 370 247 8 260 620 244 599 7.28e-32 131
MS.gene45517.t1 AT5G52510 26.992 389 248 12 270 637 266 639 7.50e-32 131
MS.gene45517.t1 AT1G55580 27.163 416 244 11 269 637 41 444 6.56e-29 120
MS.gene45517.t1 AT3G49950 25.000 392 264 9 269 639 27 409 1.08e-26 113
MS.gene45517.t1 AT4G08250 25.575 391 263 13 264 637 97 476 5.33e-25 109
MS.gene45517.t1 AT3G13840 24.804 383 250 12 272 637 148 509 3.64e-14 75.9

Find 109 sgRNAs with CRISPR-Local

Find 141 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCACTCTCTCCAACAAATT+TGG 0.135021 2.1:+6572804 None:intergenic
AGTCTTCACATTATAGATTT+TGG 0.151926 2.1:-6572921 MS.gene45517:CDS
GGAGGAATTGGAAGAGTATT+TGG 0.153984 2.1:+6573548 None:intergenic
ATGCTATGAACAAATATATT+TGG 0.177812 2.1:+6572555 None:intergenic
CAAAGATTGGCACATTTCTT+TGG 0.204755 2.1:-6573128 MS.gene45517:CDS
GAATTCTCTTCAACTGTTCT+TGG 0.222104 2.1:-6574001 MS.gene45517:CDS
CTAACAGATTCTATGGTTAT+AGG 0.224284 2.1:-6573295 MS.gene45517:CDS
GAATCCGAGGGGTGCTGTTT+TGG 0.240293 2.1:-6572598 MS.gene45517:CDS
TGGGTTTAAGTCTTTGAAAT+TGG 0.243482 2.1:-6572292 MS.gene45517:CDS
AGTCTTCTTCCATGAGAAAT+TGG 0.244329 2.1:+6573873 None:intergenic
TATCCCTGTGATCCTCAATT+TGG 0.247519 2.1:+6572833 None:intergenic
TCTTAATCTGGTTTAATAAC+TGG 0.258792 2.1:+6573180 None:intergenic
GAAACAAAGTTTGGAGGAAT+TGG 0.270095 2.1:+6573536 None:intergenic
TTCTATTTGGTTCTTCTTGT+TGG 0.274191 2.1:-6572158 MS.gene45517:CDS
TGAAATATCATTACAAGAAA+TGG 0.276552 2.1:+6573211 None:intergenic
TTTGTTCATAGCATTGTTAA+TGG 0.283287 2.1:-6572546 MS.gene45517:CDS
ATCTGCAGCAGATTTCTTCT+TGG 0.288366 2.1:+6573046 None:intergenic
GAGAAGAATGTTTCTTAATC+TGG 0.289921 2.1:+6573168 None:intergenic
ATTCACTCTCCCTTTGTTCA+TGG 0.291853 2.1:+6574020 None:intergenic
CTTTGAGTTCCATCACCTAT+TGG 0.292355 2.1:+6573146 None:intergenic
TAGTTGTATGAGTCTATAAT+TGG 0.294656 2.1:+6573593 None:intergenic
AGTAATTTATCAAATAATTC+TGG 0.301090 2.1:+6573386 None:intergenic
GAGGAATTGGAAGAGTATTT+GGG 0.326156 2.1:+6573549 None:intergenic
TGGAAGGGTAGAGTTCTATT+TGG 0.329745 2.1:-6572171 MS.gene45517:CDS
GAATTATCTAACAGATTCTA+TGG 0.335593 2.1:-6573302 MS.gene45517:CDS
TCGAATTGAGAAACAAAGTT+TGG 0.339338 2.1:+6573527 None:intergenic
TCCTCAAACATCAACCTATT+AGG 0.349519 2.1:+6572420 None:intergenic
TGATGTTTGAGGAAGAGTTT+TGG 0.352833 2.1:-6572410 MS.gene45517:CDS
GCAACTTATTGCGAACGTTT+CGG 0.353167 2.1:-6572762 MS.gene45517:CDS
AAGAAACATTCTTCTCCAAT+AGG 0.354107 2.1:-6573161 MS.gene45517:CDS
GAAGAAATCTGCTGCAGATA+TGG 0.361247 2.1:-6573042 MS.gene45517:CDS
TGGAAGACTCTTCATGTTCA+TGG 0.366829 2.1:+6573915 None:intergenic
AGAGTATTTGGGAGTGGAAA+AGG 0.382981 2.1:+6573560 None:intergenic
ATCCCTGTGATCCTCAATTT+GGG 0.383992 2.1:+6572834 None:intergenic
ACCTGATGAGACAGTTGTTT+CGG 0.393796 2.1:-6572622 MS.gene45517:CDS
GCAATACCATTGAACTCAAA+AGG 0.401581 2.1:+6572735 None:intergenic
GTTGAAGAGCAAAGGAATCT+TGG 0.406232 2.1:+6573828 None:intergenic
GAGTGAATGGAACAGGTCTT+AGG 0.408191 2.1:-6572788 MS.gene45517:CDS
GATAGATCTTCCAAATTTGT+TGG 0.422261 2.1:-6572814 MS.gene45517:CDS
AAACTATAATCACTGATGTC+AGG 0.427646 2.1:+6573650 None:intergenic
TTGAGAGGCCAGAGACATAT+AGG 0.428001 2.1:-6572341 MS.gene45517:CDS
TTGAACGTGAGGATCCTAAT+AGG 0.434511 2.1:-6572434 MS.gene45517:CDS
TTTGATAAATTACTAGTCCT+TGG 0.440112 2.1:-6573377 MS.gene45517:CDS
ATGAGGAAGTTGTGGATTTG+AGG 0.441434 2.1:-6573259 MS.gene45517:CDS
TAGCTTGTGAAGGCTGTGAT+AGG 0.447026 2.1:-6572365 MS.gene45517:CDS
ACTCTTCATGTTCATGGTGT+TGG 0.448056 2.1:+6573921 None:intergenic
TTGGAGAGAGTGAATGGAAC+AGG 0.449006 2.1:-6572795 MS.gene45517:CDS
GAAGCACGTTTAGCAGGAAC+TGG 0.455780 2.1:-6573095 MS.gene45517:CDS
TGCCATTGCCTATATGTCTC+TGG 0.465075 2.1:+6572333 None:intergenic
GGTTATGGTTTCAAGTGGCC+TGG 0.469133 2.1:-6572894 MS.gene45517:CDS
AATTTGTTGGAGAGAGTGAA+TGG 0.471019 2.1:-6572801 MS.gene45517:CDS
CATCGTTTATCGAAAAGATC+TGG 0.473353 2.1:-6572864 MS.gene45517:CDS
TCCTAATAGGTTGATGTTTG+AGG 0.474185 2.1:-6572421 MS.gene45517:CDS
GAAGAGTCTTCCAATGCTCT+TGG 0.479029 2.1:-6573905 MS.gene45517:CDS
TCCGAAACAACTGTCTCATC+AGG 0.480396 2.1:+6572621 None:intergenic
GAGTATTTGGGAGTGGAAAA+GGG 0.483840 2.1:+6573561 None:intergenic
GAAGAAGTGGAGGAAGGAGG+AGG 0.488333 2.1:+6573728 None:intergenic
GCACTTGAAGCACGTTTAGC+AGG 0.499951 2.1:-6573101 MS.gene45517:CDS
GAGAAAATGCTCTTCTTCGA+AGG 0.500366 2.1:+6573463 None:intergenic
CATGTTGTGAAGCTCTATGC+TGG 0.501576 2.1:+6572132 None:intergenic
CCACCCAAATTGAGGATCAC+AGG 0.506955 2.1:-6572837 MS.gene45517:CDS
CTCAGTAAGTTGAAGAGCAA+AGG 0.507074 2.1:+6573820 None:intergenic
TAGGAGACAAAGAAGTTATG+AGG 0.508963 2.1:-6573276 MS.gene45517:CDS
AAAATTGGATGCTACAAGGT+TGG 0.509330 2.1:-6572191 MS.gene45517:CDS
GCAGTAGCAGTAGGAGGAGG+AGG 0.511002 2.1:+6573758 None:intergenic
GTTGATATAACCAAGAGCAT+TGG 0.514520 2.1:+6573895 None:intergenic
ATTGGAAGAGTATTTGGGAG+TGG 0.520042 2.1:+6573554 None:intergenic
AATTGAGAAACAAAGTTTGG+AGG 0.522706 2.1:+6573530 None:intergenic
TTATATCAACCAATTTCTCA+TGG 0.530130 2.1:-6573882 MS.gene45517:CDS
AAGAAGTTATGAGGAAGTTG+TGG 0.533441 2.1:-6573267 MS.gene45517:CDS
AGAAGAAGACGACGAAGAAG+TGG 0.533488 2.1:+6573715 None:intergenic
GCATGTTATAGATAAATTGA+AGG 0.536806 2.1:-6572265 MS.gene45517:CDS
TGATTCACACCATGAACAAA+GGG 0.540483 2.1:-6574029 MS.gene45517:CDS
CATGTTATAGATAAATTGAA+GGG 0.543479 2.1:-6572264 MS.gene45517:CDS
CATTCTTCTCCAATAGGTGA+TGG 0.543698 2.1:-6573155 MS.gene45517:CDS
GTCTTAATTACCTCATGAGA+AGG 0.545201 2.1:+6573491 None:intergenic
AGGTGATGGAACTCAAAGAT+TGG 0.546946 2.1:-6573141 MS.gene45517:CDS
GGCATGCTGATGAATAAACT+TGG 0.547453 2.1:+6573009 None:intergenic
TTGGATGCTACAAGGTTGGA+AGG 0.548278 2.1:-6572187 MS.gene45517:CDS
TTGGGAAAGTATCAAAGTTG+AGG 0.550259 2.1:-6572706 MS.gene45517:CDS
CTGGCGGGCCACCCAAATTG+AGG 0.551191 2.1:-6572845 MS.gene45517:CDS
GTAGCAGTAGGAGGAGGAGG+AGG 0.552690 2.1:+6573761 None:intergenic
CAGTTGTTTCGGAGAATCCG+AGG 0.555081 2.1:-6572611 MS.gene45517:CDS
AACTATAATCACTGATGTCA+GGG 0.555622 2.1:+6573651 None:intergenic
GCAGCAGTAGCAGTAGGAGG+AGG 0.561458 2.1:+6573755 None:intergenic
GGAGCAGCAGCAGTAGCAGT+AGG 0.562763 2.1:+6573749 None:intergenic
TATAATTGGATCAAGTTCAA+AGG 0.570239 2.1:+6573607 None:intergenic
GGCCAGAGACATATAGGCAA+TGG 0.582352 2.1:-6572335 MS.gene45517:CDS
AGTTGTTTCGGAGAATCCGA+GGG 0.585285 2.1:-6572610 MS.gene45517:CDS
CATGGAAGATGATGACATAG+AGG 0.588846 2.1:-6573960 MS.gene45517:CDS
TTGATTCACACCATGAACAA+AGG 0.592551 2.1:-6574030 MS.gene45517:CDS
GACGACGAAGAAGTGGAGGA+AGG 0.594630 2.1:+6573722 None:intergenic
TCTTAATTACCTCATGAGAA+GGG 0.597606 2.1:+6573492 None:intergenic
CACCCAAATTGAGGATCACA+GGG 0.601284 2.1:-6572836 MS.gene45517:CDS
AGAAGACGACGAAGAAGTGG+AGG 0.605523 2.1:+6573718 None:intergenic
GTGTTGGTTATGGTTTCAAG+TGG 0.612035 2.1:-6572899 MS.gene45517:CDS
GACGAAGAAGTGGAGGAAGG+AGG 0.614142 2.1:+6573725 None:intergenic
AAATCCAAAACAGCACCCCT+CGG 0.616918 2.1:+6572594 None:intergenic
GCAGCAGCAGTAGCAGTAGG+AGG 0.617587 2.1:+6573752 None:intergenic
CCTGTGATCCTCAATTTGGG+TGG 0.623258 2.1:+6572837 None:intergenic
GATAAACGATGTATTAAACC+AGG 0.631290 2.1:+6572876 None:intergenic
GTTTATCGAAAAGATCTGGC+GGG 0.631371 2.1:-6572860 MS.gene45517:CDS
TGGATGCTACAAGGTTGGAA+GGG 0.641743 2.1:-6572186 MS.gene45517:CDS
TTGTTGTAGATGGACAAAAG+AGG 0.647148 2.1:-6574055 None:intergenic
CGTTTATCGAAAAGATCTGG+CGG 0.648801 2.1:-6572861 MS.gene45517:CDS
TAACAACAATGTTGAACGTG+AGG 0.650267 2.1:-6572445 MS.gene45517:CDS
ATGAATGTTATAGCTTGTGA+AGG 0.662961 2.1:-6572375 MS.gene45517:CDS
AAGGCTGTGATAGGATTGAG+AGG 0.704778 2.1:-6572356 MS.gene45517:CDS
GTTGTTTCGGAGAATCCGAG+GGG 0.740038 2.1:-6572609 MS.gene45517:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTAATTTATCAAATAATTC+TGG + chr2.1:6572809-6572828 None:intergenic 15.0%
!!! TTTTATAAACAAATTTCTCA+TGG - chr2.1:6572214-6572233 MS.gene45517:CDS 15.0%
!! ATGCTATGAACAAATATATT+TGG + chr2.1:6573640-6573659 None:intergenic 20.0%
!! CATGTTATAGATAAATTGAA+GGG - chr2.1:6573928-6573947 MS.gene45517:CDS 20.0%
!! TGAAATATCATTACAAGAAA+TGG + chr2.1:6572984-6573003 None:intergenic 20.0%
!! TTGGTACTAAAGTAAAAAAA+GGG - chr2.1:6572834-6572853 MS.gene45517:CDS 20.0%
! AATAAAAATTGGATGCTACA+AGG - chr2.1:6573997-6574016 MS.gene45517:CDS 25.0%
! CAATGGTATTGCAAAAAATT+GGG - chr2.1:6573468-6573487 MS.gene45517:CDS 25.0%
! CTTGGTACTAAAGTAAAAAA+AGG - chr2.1:6572833-6572852 MS.gene45517:CDS 25.0%
! GAATTATCTAACAGATTCTA+TGG - chr2.1:6572890-6572909 MS.gene45517:CDS 25.0%
! GCATGTTATAGATAAATTGA+AGG - chr2.1:6573927-6573946 MS.gene45517:CDS 25.0%
! TAGTTGTATGAGTCTATAAT+TGG + chr2.1:6572602-6572621 None:intergenic 25.0%
! TATAATTGGATCAAGTTCAA+AGG + chr2.1:6572588-6572607 None:intergenic 25.0%
! TCAATGGTATTGCAAAAAAT+TGG - chr2.1:6573467-6573486 MS.gene45517:CDS 25.0%
! TTAAACCTTGTCACAAAAAA+AGG + chr2.1:6573685-6573704 None:intergenic 25.0%
! TTATATCAACCAATTTCTCA+TGG - chr2.1:6572310-6572329 MS.gene45517:CDS 25.0%
! TTTGATAAATTACTAGTCCT+TGG - chr2.1:6572815-6572834 MS.gene45517:CDS 25.0%
! TTTGTTCATAGCATTGTTAA+TGG - chr2.1:6573646-6573665 MS.gene45517:CDS 25.0%
!! AGTCTTCACATTATAGATTT+TGG - chr2.1:6573271-6573290 MS.gene45517:CDS 25.0%
!! ATAATTGCAAGCTTTTCAAA+AGG + chr2.1:6573208-6573227 None:intergenic 25.0%
!! TAATAGTGATTTTCTGTTTG+AGG - chr2.1:6573972-6573991 MS.gene45517:CDS 25.0%
!! TAATTGCAAGCTTTTCAAAA+GGG + chr2.1:6573207-6573226 None:intergenic 25.0%
!! TCTTAATCTGGTTTAATAAC+TGG + chr2.1:6573015-6573034 None:intergenic 25.0%
!! TGTTTGAGGTGAATAAAAAT+TGG - chr2.1:6573986-6574005 MS.gene45517:CDS 25.0%
!!! AAGTTGAGGATTTTAAGATA+AGG - chr2.1:6573500-6573519 MS.gene45517:CDS 25.0%
!!! CTTTTTTTACTTTAGTACCA+AGG + chr2.1:6572835-6572854 None:intergenic 25.0%
!!! TGTTTTGGATTTGATTAAGA+AGG - chr2.1:6573609-6573628 MS.gene45517:CDS 25.0%
!!! TTTTTTTGTGACAAGGTTTA+AGG - chr2.1:6573684-6573703 MS.gene45517:CDS 25.0%
AAACTATAATCACTGATGTC+AGG + chr2.1:6572545-6572564 None:intergenic 30.0%
AACTATAATCACTGATGTCA+GGG + chr2.1:6572544-6572563 None:intergenic 30.0%
AAGAAACATTCTTCTCCAAT+AGG - chr2.1:6573031-6573050 MS.gene45517:CDS 30.0%
AATTGAGAAACAAAGTTTGG+AGG + chr2.1:6572665-6572684 None:intergenic 30.0%
CTAACAGATTCTATGGTTAT+AGG - chr2.1:6572897-6572916 MS.gene45517:CDS 30.0%
GAGAAGAATGTTTCTTAATC+TGG + chr2.1:6573027-6573046 None:intergenic 30.0%
GATAAACGATGTATTAAACC+AGG + chr2.1:6573319-6573338 None:intergenic 30.0%
GATAGATCTTCCAAATTTGT+TGG - chr2.1:6573378-6573397 MS.gene45517:CDS 30.0%
TCGAATTGAGAAACAAAGTT+TGG + chr2.1:6572668-6572687 None:intergenic 30.0%
TCTTAATTACCTCATGAGAA+GGG + chr2.1:6572703-6572722 None:intergenic 30.0%
! ATGAATGTTATAGCTTGTGA+AGG - chr2.1:6573817-6573836 MS.gene45517:CDS 30.0%
!! CACATTATAGATTTTGGTGT+TGG - chr2.1:6573277-6573296 MS.gene45517:CDS 30.0%
!! TGGGTTTAAGTCTTTGAAAT+TGG - chr2.1:6573900-6573919 MS.gene45517:CDS 30.0%
!! TTCTATTTGGTTCTTCTTGT+TGG - chr2.1:6574034-6574053 MS.gene45517:CDS 30.0%
!!! ATAGATTTTGGTGTTGGTTA+TGG - chr2.1:6573283-6573302 MS.gene45517:CDS 30.0%
!!! ATTTGTAGTTTTGTTGATGC+TGG + chr2.1:6572511-6572530 None:intergenic 30.0%
AAAATTGGATGCTACAAGGT+TGG - chr2.1:6574001-6574020 MS.gene45517:CDS 35.0%
AAGAAGTTATGAGGAAGTTG+TGG - chr2.1:6572925-6572944 MS.gene45517:CDS 35.0%
AGTCTTCTTCCATGAGAAAT+TGG + chr2.1:6572322-6572341 None:intergenic 35.0%
CAAAGATTGGCACATTTCTT+TGG - chr2.1:6573064-6573083 MS.gene45517:CDS 35.0%
CATCGTTTATCGAAAAGATC+TGG - chr2.1:6573328-6573347 MS.gene45517:CDS 35.0%
GAAACAAAGTTTGGAGGAAT+TGG + chr2.1:6572659-6572678 None:intergenic 35.0%
GAATTCTCTTCAACTGTTCT+TGG - chr2.1:6572191-6572210 MS.gene45517:CDS 35.0%
GCAATACCATTGAACTCAAA+AGG + chr2.1:6573460-6573479 None:intergenic 35.0%
GTCTTAATTACCTCATGAGA+AGG + chr2.1:6572704-6572723 None:intergenic 35.0%
TAACAACAATGTTGAACGTG+AGG - chr2.1:6573747-6573766 MS.gene45517:CDS 35.0%
TAGGAGACAAAGAAGTTATG+AGG - chr2.1:6572916-6572935 MS.gene45517:CDS 35.0%
TCCTCAAACATCAACCTATT+AGG + chr2.1:6573775-6573794 None:intergenic 35.0%
TGATTCACACCATGAACAAA+GGG - chr2.1:6572163-6572182 MS.gene45517:CDS 35.0%
TTCACTCTCTCCAACAAATT+TGG + chr2.1:6573391-6573410 None:intergenic 35.0%
TTGATTCACACCATGAACAA+AGG - chr2.1:6572162-6572181 MS.gene45517:CDS 35.0%
! ATGTTTGAGGAAGAGTTTTG+GGG - chr2.1:6573784-6573803 MS.gene45517:CDS 35.0%
! ATTTTAGGCACATGGGAAAT+GGG - chr2.1:6573881-6573900 MS.gene45517:CDS 35.0%
! CATATAGGCAATGGCATTTT+AGG - chr2.1:6573866-6573885 MS.gene45517:CDS 35.0%
! GATGTTTGAGGAAGAGTTTT+GGG - chr2.1:6573783-6573802 MS.gene45517:CDS 35.0%
! GTTGATATAACCAAGAGCAT+TGG + chr2.1:6572300-6572319 None:intergenic 35.0%
! TGATGTTTGAGGAAGAGTTT+TGG - chr2.1:6573782-6573801 MS.gene45517:CDS 35.0%
!! AATTTGTTGGAGAGAGTGAA+TGG - chr2.1:6573391-6573410 MS.gene45517:CDS 35.0%
!! GAGGAATTGGAAGAGTATTT+GGG + chr2.1:6572646-6572665 None:intergenic 35.0%
!! TCCTAATAGGTTGATGTTTG+AGG - chr2.1:6573771-6573790 MS.gene45517:CDS 35.0%
!! TGAAAGCTTGTGTTTTCAAG+TGG + chr2.1:6572860-6572879 None:intergenic 35.0%
!! TTGGGAAAGTATCAAAGTTG+AGG - chr2.1:6573486-6573505 MS.gene45517:CDS 35.0%
!!! ATGCACCTTTTTTTGTGACA+AGG - chr2.1:6573677-6573696 MS.gene45517:CDS 35.0%
ACCTGATGAGACAGTTGTTT+CGG - chr2.1:6573570-6573589 MS.gene45517:CDS 40.0%
ACTCTTCATGTTCATGGTGT+TGG + chr2.1:6572274-6572293 None:intergenic 40.0%
ATCCCTGTGATCCTCAATTT+GGG + chr2.1:6573361-6573380 None:intergenic 40.0%
ATCTGCAGCAGATTTCTTCT+TGG + chr2.1:6573149-6573168 None:intergenic 40.0%
ATGAGGAAGTTGTGGATTTG+AGG - chr2.1:6572933-6572952 MS.gene45517:CDS 40.0%
ATTCACTCTCCCTTTGTTCA+TGG + chr2.1:6572175-6572194 None:intergenic 40.0%
CATGGAAGATGATGACATAG+AGG - chr2.1:6572232-6572251 MS.gene45517:CDS 40.0%
CATTCTTCTCCAATAGGTGA+TGG - chr2.1:6573037-6573056 MS.gene45517:CDS 40.0%
CGTTTATCGAAAAGATCTGG+CGG - chr2.1:6573331-6573350 MS.gene45517:CDS 40.0%
GAAGAAATCTGCTGCAGATA+TGG - chr2.1:6573150-6573169 MS.gene45517:CDS 40.0%
GAGAAAATGCTCTTCTTCGA+AGG + chr2.1:6572732-6572751 None:intergenic 40.0%
GAGTATTTGGGAGTGGAAAA+GGG + chr2.1:6572634-6572653 None:intergenic 40.0%
GCAACTTATTGCGAACGTTT+CGG - chr2.1:6573430-6573449 MS.gene45517:CDS 40.0%
GGCATGCTGATGAATAAACT+TGG + chr2.1:6573186-6573205 None:intergenic 40.0%
GTTGAAGAGCAAAGGAATCT+TGG + chr2.1:6572367-6572386 None:intergenic 40.0%
GTTTATCGAAAAGATCTGGC+GGG - chr2.1:6573332-6573351 MS.gene45517:CDS 40.0%
TATCCCTGTGATCCTCAATT+TGG + chr2.1:6573362-6573381 None:intergenic 40.0%
TGGAAGACTCTTCATGTTCA+TGG + chr2.1:6572280-6572299 None:intergenic 40.0%
TGGAAGGGTAGAGTTCTATT+TGG - chr2.1:6574021-6574040 MS.gene45517:CDS 40.0%
TTGAACGTGAGGATCCTAAT+AGG - chr2.1:6573758-6573777 MS.gene45517:CDS 40.0%
! AACTGTTTTCCCTTCTCATG+AGG - chr2.1:6572691-6572710 MS.gene45517:CDS 40.0%
! AGAGTATTTGGGAGTGGAAA+AGG + chr2.1:6572635-6572654 None:intergenic 40.0%
! CAATGGCATTTTAGGCACAT+GGG - chr2.1:6573874-6573893 MS.gene45517:CDS 40.0%
! CATTTTAGGCACATGGGAAA+TGG - chr2.1:6573880-6573899 MS.gene45517:CDS 40.0%
! CTCAGTAAGTTGAAGAGCAA+AGG + chr2.1:6572375-6572394 None:intergenic 40.0%
! CTTTGAGTTCCATCACCTAT+TGG + chr2.1:6573049-6573068 None:intergenic 40.0%
!! AGGTGATGGAACTCAAAGAT+TGG - chr2.1:6573051-6573070 MS.gene45517:CDS 40.0%
!! ATTGGAAGAGTATTTGGGAG+TGG + chr2.1:6572641-6572660 None:intergenic 40.0%
!! GGAGGAATTGGAAGAGTATT+TGG + chr2.1:6572647-6572666 None:intergenic 40.0%
!! GTGTTGGTTATGGTTTCAAG+TGG - chr2.1:6573293-6573312 MS.gene45517:CDS 40.0%
!! TGTTTGAGGAAGAGTTTTGG+GGG - chr2.1:6573785-6573804 MS.gene45517:CDS 40.0%
!!! GGTGTTCCTTTTGAGTTCAA+TGG - chr2.1:6573451-6573470 MS.gene45517:CDS 40.0%
!!! GTAGTTTTGTTGATGCTGGA+TGG + chr2.1:6572507-6572526 None:intergenic 40.0%
AAATCCAAAACAGCACCCCT+CGG + chr2.1:6573601-6573620 None:intergenic 45.0%
AAGGCTGTGATAGGATTGAG+AGG - chr2.1:6573836-6573855 MS.gene45517:CDS 45.0%
AGAAGAAGACGACGAAGAAG+TGG + chr2.1:6572480-6572499 None:intergenic 45.0%
CACCCAAATTGAGGATCACA+GGG - chr2.1:6573356-6573375 MS.gene45517:CDS 45.0%
GAAGAGTCTTCCAATGCTCT+TGG - chr2.1:6572287-6572306 MS.gene45517:CDS 45.0%
GAGTGAATGGAACAGGTCTT+AGG - chr2.1:6573404-6573423 MS.gene45517:CDS 45.0%
TCCGAAACAACTGTCTCATC+AGG + chr2.1:6573574-6573593 None:intergenic 45.0%
TGCCATTGCCTATATGTCTC+TGG + chr2.1:6573862-6573881 None:intergenic 45.0%
TGGATGCTACAAGGTTGGAA+GGG - chr2.1:6574006-6574025 MS.gene45517:CDS 45.0%
TTGAGAGGCCAGAGACATAT+AGG - chr2.1:6573851-6573870 MS.gene45517:CDS 45.0%
TTGGAGAGAGTGAATGGAAC+AGG - chr2.1:6573397-6573416 MS.gene45517:CDS 45.0%
TTGGATGCTACAAGGTTGGA+AGG - chr2.1:6574005-6574024 MS.gene45517:CDS 45.0%
! AGTTGTTTCGGAGAATCCGA+GGG - chr2.1:6573582-6573601 MS.gene45517:CDS 45.0%
! GCAATGGCATTTTAGGCACA+TGG - chr2.1:6573873-6573892 MS.gene45517:CDS 45.0%
! TAGCTTGTGAAGGCTGTGAT+AGG - chr2.1:6573827-6573846 MS.gene45517:CDS 45.0%
AGAAGACGACGAAGAAGTGG+AGG + chr2.1:6572477-6572496 None:intergenic 50.0%
CCACCCAAATTGAGGATCAC+AGG - chr2.1:6573355-6573374 MS.gene45517:CDS 50.0%
CCTGTGATCCTCAATTTGGG+TGG + chr2.1:6573358-6573377 None:intergenic 50.0%
GAAGCACGTTTAGCAGGAAC+TGG - chr2.1:6573097-6573116 MS.gene45517:CDS 50.0%
GCACTTGAAGCACGTTTAGC+AGG - chr2.1:6573091-6573110 MS.gene45517:CDS 50.0%
GGCCAGAGACATATAGGCAA+TGG - chr2.1:6573857-6573876 MS.gene45517:CDS 50.0%
! CAGTTGTTTCGGAGAATCCG+AGG - chr2.1:6573581-6573600 MS.gene45517:CDS 50.0%
! GGTTATGGTTTCAAGTGGCC+TGG - chr2.1:6573298-6573317 MS.gene45517:CDS 50.0%
! GTTGTTTCGGAGAATCCGAG+GGG - chr2.1:6573583-6573602 MS.gene45517:CDS 50.0%
!!! TGAGGAAGAGTTTTGGGGGA+AGG - chr2.1:6573789-6573808 MS.gene45517:CDS 50.0%
GAAGAAGTGGAGGAAGGAGG+AGG + chr2.1:6572467-6572486 None:intergenic 55.0%
GACGAAGAAGTGGAGGAAGG+AGG + chr2.1:6572470-6572489 None:intergenic 55.0%
GACGACGAAGAAGTGGAGGA+AGG + chr2.1:6572473-6572492 None:intergenic 55.0%
!!! GAATCCGAGGGGTGCTGTTT+TGG - chr2.1:6573594-6573613 MS.gene45517:CDS 55.0%
GCAGCAGCAGTAGCAGTAGG+AGG + chr2.1:6572443-6572462 None:intergenic 60.0%
GCAGCAGTAGCAGTAGGAGG+AGG + chr2.1:6572440-6572459 None:intergenic 60.0%
GCAGTAGCAGTAGGAGGAGG+AGG + chr2.1:6572437-6572456 None:intergenic 60.0%
GGAGCAGCAGCAGTAGCAGT+AGG + chr2.1:6572446-6572465 None:intergenic 60.0%
GTAGCAGTAGGAGGAGGAGG+AGG + chr2.1:6572434-6572453 None:intergenic 60.0%
GCAGTAGGAGGAGGAGGAGG+AGG + chr2.1:6572431-6572450 None:intergenic 65.0%
GTAGGAGGAGGAGGAGGAGG+AGG + chr2.1:6572428-6572447 None:intergenic 65.0%
! CTGGCGGGCCACCCAAATTG+AGG - chr2.1:6573347-6573366 MS.gene45517:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 6572146 6574068 6572146 ID=MS.gene45517
chr2.1 mRNA 6572146 6574068 6572146 ID=MS.gene45517.t1;Parent=MS.gene45517
chr2.1 exon 6572146 6574068 6572146 ID=MS.gene45517.t1.exon1;Parent=MS.gene45517.t1
chr2.1 CDS 6572146 6574068 6572146 ID=cds.MS.gene45517.t1;Parent=MS.gene45517.t1
Gene Sequence

>MS.gene45517

ATGGACAAAAGAGGCATTGATTCACACCATGAACAAAGGGAGAGTGAATTCTCTTCAACTGTTCTTGGTTTTATAAACAAATTTCTCATGGAAGATGATGACATAGAGGAAGACTACAATATGTTCCAACACCATGAACATGAAGAGTCTTCCAATGCTCTTGGTTATATCAACCAATTTCTCATGGAAGAAGACTTTGAAAAAGAATACACTATGTTCCAAGATTCCTTTGCTCTTCAACTTACTGAGAAATCATTTCATGATGTTATTTCTCACACTCCTCCTCCTCCTCCTCCTCCTACTGCTACTGCTGCTGCTCCTCCTCCTTCCTCCACTTCTTCGTCGTCTTCTTCTTCTTCCATCCAGCATCAACAAAACTACAAATTTGTGCATAGCCCTGACATCAGTGATTATAGTTTCAGCAGTGTTAGCACTAGCTCCTTTGAACTTGATCCAATTATAGACTCATACAACTACAATTACAACCCTTTTCCACTCCCAAATACTCTTCCAATTCCTCCAAACTTTGTTTCTCAATTCGACTCAACTGTTTTCCCTTCTCATGAGGTAATTAAGACAGAAACCTTCGAAGAAGAGCATTTTCTCAATGTGTCACAAAATGAGTCAGAACAAGTATATGTAGATGATAACAGTGAGTTACCAGAATTATTTGATAAATTACTAGTCCTTGGTACTAAAGTAAAAAAAGGGCCACTTGAAAACACAAGCTTTCAGCAGAATGAAGAATTATCTAACAGATTCTATGGTTATAGGAGACAAAGAAGTTATGAGGAAGTTGTGGATTTGAGGACACTATTGATGCTGTGTGCACAATCCATTTCTTGTAATGATATTTCAAATGCTAACCAGTTATTAAACCAGATTAAGAAACATTCTTCTCCAATAGGTGATGGAACTCAAAGATTGGCACATTTCTTTGGAAATGCACTTGAAGCACGTTTAGCAGGAACTGGTTCACAAATCTATAGAGCTCTATCTTCCAAGAAGAAATCTGCTGCAGATATGGCAAGAGCTTACCAAGTTTATTCATCAGCATGCCCTTTTGAAAAGCTTGCAATTATGTTCTCAAACAATGCGATTTTTAATGTAGCAAAAGAAACAAAAAGTCTTCACATTATAGATTTTGGTGTTGGTTATGGTTTCAAGTGGCCTGGTTTAATACATCGTTTATCGAAAAGATCTGGCGGGCCACCCAAATTGAGGATCACAGGGATAGATCTTCCAAATTTGTTGGAGAGAGTGAATGGAACAGGTCTTAGGCTTGCAACTTATTGCGAACGTTTCGGTGTTCCTTTTGAGTTCAATGGTATTGCAAAAAATTGGGAAAGTATCAAAGTTGAGGATTTTAAGATAAGGAAAGATGAGTTTGTTGCTGTGAATTGTTATTTTAAACTTGAGAATCTACCTGATGAGACAGTTGTTTCGGAGAATCCGAGGGGTGCTGTTTTGGATTTGATTAAGAAGGCAAATCCAAATATATTTGTTCATAGCATTGTTAATGGTTGTTATGATGCACCTTTTTTTGTGACAAGGTTTAAGGAAGCTGTTTTTCATTACTCAGCATTGTTTGATATGCTTGATAACAACAATGTTGAACGTGAGGATCCTAATAGGTTGATGTTTGAGGAAGAGTTTTGGGGGAAGGATATAATGAATGTTATAGCTTGTGAAGGCTGTGATAGGATTGAGAGGCCAGAGACATATAGGCAATGGCATTTTAGGCACATGGGAAATGGGTTTAAGTCTTTGAAATTGGATAAGCATGTTATAGATAAATTGAAGGGTAAGTTGAGAGATGATGCATATAATAGTGATTTTCTGTTTGAGGTGAATAAAAATTGGATGCTACAAGGTTGGAAGGGTAGAGTTCTATTTGGTTCTTCTTGTTGGATTCCAGCATAG
Protein sequence

>MS.gene45517.t1

MDKRGIDSHHEQRESEFSSTVLGFINKFLMEDDDIEEDYNMFQHHEHEESSNALGYINQFLMEEDFEKEYTMFQDSFALQLTEKSFHDVISHTPPPPPPPTATAAAPPPSSTSSSSSSSSIQHQQNYKFVHSPDISDYSFSSVSTSSFELDPIIDSYNYNYNPFPLPNTLPIPPNFVSQFDSTVFPSHEVIKTETFEEEHFLNVSQNESEQVYVDDNSELPELFDKLLVLGTKVKKGPLENTSFQQNEELSNRFYGYRRQRSYEEVVDLRTLLMLCAQSISCNDISNANQLLNQIKKHSSPIGDGTQRLAHFFGNALEARLAGTGSQIYRALSSKKKSAADMARAYQVYSSACPFEKLAIMFSNNAIFNVAKETKSLHIIDFGVGYGFKWPGLIHRLSKRSGGPPKLRITGIDLPNLLERVNGTGLRLATYCERFGVPFEFNGIAKNWESIKVEDFKIRKDEFVAVNCYFKLENLPDETVVSENPRGAVLDLIKKANPNIFVHSIVNGCYDAPFFVTRFKEAVFHYSALFDMLDNNNVEREDPNRLMFEEEFWGKDIMNVIACEGCDRIERPETYRQWHFRHMGNGFKSLKLDKHVIDKLKGKLRDDAYNSDFLFEVNKNWMLQGWKGRVLFGSSCWIPA